AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439370 MtrunA17_Chr6g0467251 71.226 212 42 2 83 275 81 292 8.32e-108 316
Msa0439370 MtrunA17_Chr6g0467251 98.734 79 1 0 1 79 258 336 1.18e-47 162
Msa0439370 MtrunA17_Chr6g0467121 45.972 211 94 2 83 275 119 327 6.09e-60 194
Msa0439370 MtrunA17_Chr6g0467121 59.302 86 34 1 2 86 294 379 1.15e-24 101
Msa0439370 MtrunA17_Chr6g0467161 44.762 210 98 1 84 275 91 300 9.84e-59 190
Msa0439370 MtrunA17_Chr6g0467161 56.944 72 31 0 2 73 267 338 4.07e-19 85.5
Msa0439370 MtrunA17_Chr5g0423911 89.333 75 8 0 1 75 1 75 2.96e-41 138
Msa0439370 MtrunA17_Chr5g0423911 91.429 35 3 0 241 275 1 35 3.74e-14 67.4
Msa0439370 MtrunA17_Chr2g0292091 37.220 223 108 7 83 275 69 289 1.54e-32 122
Msa0439370 MtrunA17_Chr2g0292091 48.529 68 33 1 2 67 254 321 3.71e-12 65.5
Msa0439370 MtrunA17_Chr2g0292241 37.333 225 105 8 83 275 74 294 1.40e-30 117
Msa0439370 MtrunA17_Chr2g0292241 50.000 68 32 1 2 67 259 326 2.60e-12 66.2
Msa0439370 MtrunA17_Chr5g0405991 35.484 217 116 6 83 275 68 284 3.00e-30 115
Msa0439370 MtrunA17_Chr5g0405991 45.455 66 32 2 2 67 251 312 6.49e-11 62.0
Msa0439370 MtrunA17_Chr2g0292101 38.117 223 106 8 83 275 70 290 1.02e-29 114
Msa0439370 MtrunA17_Chr2g0279041 36.150 213 111 6 83 272 72 282 8.50e-29 112
Msa0439370 MtrunA17_Chr2g0292151 35.426 223 112 7 83 275 74 294 3.90e-28 110
Msa0439370 MtrunA17_Chr2g0292151 41.935 93 50 2 2 90 259 351 1.80e-13 69.7
Msa0439370 MtrunA17_Chr4g0076211 34.259 216 112 5 83 274 86 295 5.13e-28 110
Msa0439370 MtrunA17_Chr2g0292251 35.135 222 112 7 84 275 74 293 6.41e-28 110
Msa0439370 MtrunA17_Chr2g0292251 41.935 93 47 3 2 87 258 350 7.35e-12 64.7
Msa0439370 MtrunA17_Chr8g0371381 34.562 217 118 6 83 275 71 287 1.31e-27 108
Msa0439370 MtrunA17_Chr2g0292211 34.529 223 114 7 83 275 85 305 2.06e-27 108
Msa0439370 MtrunA17_Chr2g0292211 42.553 94 48 2 2 89 270 363 4.58e-13 68.6
Msa0439370 MtrunA17_Chr1g0164891 35.023 217 109 9 84 269 135 350 2.26e-27 109
Msa0439370 MtrunA17_Chr1g0164891 46.269 67 36 0 1 67 322 388 6.83e-11 62.0
Msa0439370 MtrunA17_Chr2g0296621 31.019 216 119 5 84 275 96 305 3.27e-27 107
Msa0439370 MtrunA17_Chr4g0013191 38.426 216 108 9 83 275 91 304 3.85e-27 107
Msa0439370 MtrunA17_Chr1g0148021 32.127 221 122 5 83 275 72 292 6.62e-27 106
Msa0439370 MtrunA17_Chr2g0279061 34.884 215 115 6 81 272 11 223 6.75e-27 105
Msa0439370 MtrunA17_Chr1g0194151 35.023 217 111 8 83 269 75 291 8.03e-27 106
Msa0439370 MtrunA17_Chr7g0225221 33.488 215 121 6 83 275 70 284 1.24e-26 105
Msa0439370 MtrunA17_Chr1g0188431 32.407 216 115 5 83 275 84 291 1.57e-26 105
Msa0439370 MtrunA17_Chr1g0188431 46.269 67 36 0 1 67 257 323 7.47e-12 64.7
Msa0439370 MtrunA17_Chr1g0157051 34.259 216 116 7 83 273 69 283 2.52e-26 105
Msa0439370 MtrunA17_Chr2g0291751 35.874 223 111 8 83 275 74 294 6.43e-26 104
Msa0439370 MtrunA17_Chr2g0291751 42.553 94 49 3 2 90 259 352 1.96e-12 66.6
Msa0439370 MtrunA17_Chr4g0053871 35.455 220 112 8 83 275 72 288 8.01e-26 103
Msa0439370 MtrunA17_Chr8g0364291 28.959 221 127 6 84 275 69 288 8.62e-26 103
Msa0439370 MtrunA17_Chr2g0292291 36.937 222 111 6 83 275 75 296 1.20e-25 103
Msa0439370 MtrunA17_Chr2g0292291 48.529 68 33 1 2 67 261 328 1.48e-11 63.9
Msa0439370 MtrunA17_Chr2g0292111 34.842 221 112 7 83 273 74 292 1.28e-25 103
Msa0439370 MtrunA17_Chr2g0292111 44.872 78 41 1 2 77 259 336 1.85e-12 66.6
Msa0439370 MtrunA17_Chr2g0292181 33.333 222 116 7 84 275 84 303 1.71e-25 103
Msa0439370 MtrunA17_Chr2g0292181 34.737 95 60 1 2 94 268 362 7.11e-11 62.0
Msa0439370 MtrunA17_Chr1g0175561 34.842 221 115 7 84 275 70 290 2.26e-25 102
Msa0439370 MtrunA17_Chr1g0197411 30.493 223 124 6 81 273 71 292 2.74e-25 102
Msa0439370 MtrunA17_Chr1g0197411 48.485 66 34 0 2 67 261 326 1.60e-12 66.6
Msa0439370 MtrunA17_Chr4g0013201 35.514 214 115 5 83 275 91 302 2.91e-25 102
Msa0439370 MtrunA17_Chr3g0106921 34.259 216 118 7 83 275 70 284 3.85e-25 102
Msa0439370 MtrunA17_Chr4g0046131 31.839 223 122 5 83 275 87 309 4.55e-25 102
Msa0439370 MtrunA17_Chr4g0013171 33.649 211 117 4 84 272 73 282 2.50e-24 99.8
Msa0439370 MtrunA17_Chr5g0401431 32.432 222 121 6 83 275 72 293 3.01e-24 99.8
Msa0439370 MtrunA17_Chr4g0072091 35.135 222 112 8 83 275 69 287 5.36e-24 99.0
Msa0439370 MtrunA17_Chr4g0072091 51.429 70 34 0 2 71 254 323 7.64e-14 70.5
Msa0439370 MtrunA17_Chr7g0254231 34.123 211 119 6 83 275 67 275 5.98e-24 98.6
Msa0439370 MtrunA17_Chr7g0254231 46.970 66 35 0 2 67 242 307 1.17e-11 63.9
Msa0439370 MtrunA17_Chr2g0292261 34.389 221 117 5 83 275 74 294 1.14e-23 98.6
Msa0439370 MtrunA17_Chr2g0292261 40.659 91 52 1 2 90 259 349 6.43e-12 65.1
Msa0439370 MtrunA17_Chr5g0404721 32.850 207 105 8 83 259 75 277 1.69e-23 97.8
Msa0439370 MtrunA17_Chr2g0320071 34.434 212 118 6 84 275 71 281 2.06e-23 97.1
Msa0439370 MtrunA17_Chr4g0013821 33.028 218 119 7 84 275 74 290 2.58e-23 97.4
Msa0439370 MtrunA17_Chr4g0013721 32.870 216 118 7 84 273 146 360 2.62e-23 98.2
Msa0439370 MtrunA17_Chr5g0432441 31.944 216 122 7 84 275 76 290 2.64e-23 97.1
Msa0439370 MtrunA17_Chr1g0181431 29.091 220 129 6 81 275 70 287 2.88e-23 97.1
Msa0439370 MtrunA17_Chr3g0129061 31.776 214 123 6 84 275 74 286 3.78e-23 96.7
Msa0439370 MtrunA17_Chr4g0068621 33.180 217 120 8 84 275 84 300 4.77e-23 96.7
Msa0439370 MtrunA17_Chr5g0438021 32.075 212 121 6 84 273 77 287 6.10e-23 95.9
Msa0439370 MtrunA17_Chr8g0372601 33.636 220 115 10 83 273 75 292 6.12e-23 96.3
Msa0439370 MtrunA17_Chr2g0320101 34.434 212 118 6 84 275 71 281 6.67e-23 95.9
Msa0439370 MtrunA17_Chr2g0320091 34.884 215 114 8 84 275 71 282 8.90e-23 95.5
Msa0439370 MtrunA17_Chr4g0075241 29.358 218 125 6 83 273 74 289 9.20e-23 95.5
Msa0439370 MtrunA17_Chr1g0194271 33.036 224 113 8 83 269 75 298 9.62e-23 95.9
Msa0439370 MtrunA17_Chr3g0114451 31.132 212 125 4 84 275 72 282 1.00e-22 95.1
Msa0439370 MtrunA17_Chr2g0292271 34.529 223 114 8 83 275 74 294 1.10e-22 95.9
Msa0439370 MtrunA17_Chr2g0292271 46.429 84 43 1 2 83 259 342 8.22e-14 70.5
Msa0439370 MtrunA17_Chr7g0258811 34.389 221 116 8 84 275 115 335 1.38e-22 95.9
Msa0439370 MtrunA17_Chr1g0204011 33.641 217 116 8 83 273 72 286 1.41e-22 95.1
Msa0439370 MtrunA17_Chr3g0106901 31.776 214 121 7 84 275 77 287 1.70e-22 94.7
Msa0439370 MtrunA17_Chr6g0451571 30.180 222 129 5 80 275 77 298 5.93e-22 93.6
Msa0439370 MtrunA17_Chr7g0244461 33.803 213 120 8 83 275 65 276 6.00e-22 93.2
Msa0439370 MtrunA17_Chr6g0477071 32.227 211 122 6 83 275 99 306 1.19e-21 92.8
Msa0439370 MtrunA17_Chr6g0477071 45.455 66 36 0 2 67 273 338 3.00e-11 62.8
Msa0439370 MtrunA17_Chr2g0322861 30.415 217 122 6 83 272 132 346 1.76e-21 92.8
Msa0439370 MtrunA17_Chr4g0063671 31.019 216 124 6 83 275 66 279 1.76e-21 92.0
Msa0439370 MtrunA17_Chr1g0181481 29.167 216 126 6 85 275 74 287 2.98e-21 91.3
Msa0439370 MtrunA17_Chr7g0224371 32.524 206 119 5 83 269 76 280 4.21e-21 90.9
Msa0439370 MtrunA17_Chr3g0129051 32.710 214 121 6 84 275 74 286 4.29e-21 90.9
Msa0439370 MtrunA17_Chr3g0129051 44.286 70 39 0 2 71 253 322 6.37e-12 64.7
Msa0439370 MtrunA17_Chr3g0136751 34.685 222 111 9 83 275 70 286 4.57e-21 90.9
Msa0439370 MtrunA17_Chr5g0402581 31.481 216 122 5 84 273 73 288 5.62e-21 90.5
Msa0439370 MtrunA17_Chr5g0402571 32.547 212 117 5 84 269 73 284 5.79e-21 90.5
Msa0439370 MtrunA17_Chr2g0299691 33.333 222 117 8 84 275 102 322 7.95e-21 90.5
Msa0439370 MtrunA17_Chr2g0299691 40.789 76 40 1 2 72 284 359 8.10e-11 61.6
Msa0439370 MtrunA17_Chr1g0181511 28.959 221 128 7 81 275 70 287 1.42e-20 89.4
Msa0439370 MtrunA17_Chr7g0268501 29.167 216 126 6 84 274 71 284 2.46e-20 88.6
Msa0439370 MtrunA17_Chr7g0268521 29.167 216 126 6 84 274 71 284 2.46e-20 88.6
Msa0439370 MtrunA17_Chr3g0114461 36.913 149 90 4 130 275 9 156 4.81e-20 85.5
Msa0439370 MtrunA17_Chr3g0128061 31.222 221 123 7 83 275 71 290 5.77e-20 87.8
Msa0439370 MtrunA17_Chr3g0128061 46.479 71 38 0 2 72 257 327 1.93e-11 63.5
Msa0439370 MtrunA17_Chr7g0244451 32.394 213 123 6 83 275 69 280 8.76e-20 87.0
Msa0439370 MtrunA17_Chr4g0070951 35.468 203 105 8 84 261 74 275 1.06e-19 87.0
Msa0439370 MtrunA17_Chr4g0038151 30.734 218 124 7 83 275 70 285 1.11e-19 87.0
Msa0439370 MtrunA17_Chr4g0024121 31.019 216 117 8 83 269 72 284 1.25e-19 87.0
Msa0439370 MtrunA17_Chr4g0013181 33.175 211 118 6 84 272 105 314 1.88e-19 86.7
Msa0439370 MtrunA17_Chr6g0460711 30.631 222 118 7 81 274 64 277 2.08e-19 86.3
Msa0439370 MtrunA17_Chr3g0129041 29.858 211 125 6 84 272 74 283 3.57e-19 85.5
Msa0439370 MtrunA17_Chr1g0213061 33.333 198 110 6 83 259 72 268 4.34e-19 85.5
Msa0439370 MtrunA17_Chr4g0038161 31.193 218 123 7 83 275 69 284 4.75e-19 85.1
Msa0439370 MtrunA17_Chr2g0292281 37.908 153 77 5 132 275 37 180 4.89e-19 84.0
Msa0439370 MtrunA17_Chr2g0292281 48.529 68 33 1 2 67 145 212 3.80e-12 64.7
Msa0439370 MtrunA17_Chr5g0421411 28.251 223 130 5 83 275 26 248 1.18e-18 83.6
Msa0439370 MtrunA17_Chr2g0320051 32.653 196 111 6 84 259 71 265 1.30e-18 84.0
Msa0439370 MtrunA17_Chr2g0320031 33.673 196 109 7 84 259 72 266 1.40e-18 84.0
Msa0439370 MtrunA17_Chr5g0400331 28.319 226 126 8 84 275 72 295 4.42e-18 82.8
Msa0439370 MtrunA17_Chr5g0432351 31.336 217 122 7 84 275 71 285 9.33e-18 81.6
Msa0439370 MtrunA17_Chr3g0107881 34.653 202 102 8 84 259 73 270 1.11e-17 81.3
Msa0439370 MtrunA17_Chr2g0320061 31.122 196 114 6 84 259 71 265 3.35e-17 80.1
Msa0439370 MtrunA17_Chr2g0329641 30.000 220 124 7 84 275 82 299 1.02e-16 79.0
Msa0439370 MtrunA17_Chr4g0038171 30.137 219 125 8 83 275 69 285 1.73e-16 78.2
Msa0439370 MtrunA17_Chr4g0043391 30.137 219 125 8 83 275 72 288 2.46e-16 77.4
Msa0439370 MtrunA17_Chr5g0432341 30.876 217 123 7 84 275 71 285 2.58e-16 77.4
Msa0439370 MtrunA17_Chr1g0155611 32.569 218 119 9 83 272 91 308 8.06e-16 76.3
Msa0439370 MtrunA17_Chr1g0181501 30.921 152 98 4 130 275 3 153 1.25e-15 73.6
Msa0439370 MtrunA17_Chr2g0278671 28.910 211 129 5 83 272 69 279 1.30e-15 75.5
Msa0439370 MtrunA17_Chr4g0074851 26.577 222 128 7 83 275 77 292 1.96e-15 75.1
Msa0439370 MtrunA17_Chr7g0254201 30.374 214 126 7 83 275 65 276 3.36e-15 74.3
Msa0439370 MtrunA17_Chr7g0254201 41.667 72 42 0 2 73 243 314 7.23e-11 61.6
Msa0439370 MtrunA17_Chr5g0432331 30.698 215 122 7 84 273 102 314 1.60e-14 72.8
Msa0439370 MtrunA17_Chr2g0311251 27.711 249 124 7 83 275 55 303 2.00e-14 72.4
Msa0439370 MtrunA17_Chr2g0316481 27.711 249 124 8 83 275 121 369 2.84e-13 69.3
Msa0439370 MtrunA17_Chr2g0316831 26.908 249 126 8 83 275 157 405 1.95e-12 67.0
Msa0439370 MtrunA17_Chr2g0316791 26.877 253 121 9 83 275 121 369 1.72e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439370 AT1G71695.1 39.437 213 107 4 83 273 89 301 5.42e-41 145
Msa0439370 AT1G71695.1 47.727 88 44 1 2 89 270 355 6.02e-19 85.9
Msa0439370 AT5G06730.1 38.182 220 108 8 84 275 79 298 1.62e-28 112
Msa0439370 AT4G37520.2 33.945 218 118 7 84 275 73 290 1.07e-27 109
Msa0439370 AT3G28200.1 33.023 215 120 5 84 275 67 280 1.26e-27 108
Msa0439370 AT3G28200.1 46.479 71 38 0 1 71 246 316 3.46e-12 65.9
Msa0439370 AT4G37520.1 33.484 221 118 7 84 275 73 293 2.60e-27 108
Msa0439370 AT4G37530.1 33.937 221 117 7 84 275 73 293 7.34e-27 107
Msa0439370 AT5G14130.1 31.651 218 124 3 83 275 77 294 8.43e-27 107
Msa0439370 AT5G14130.1 42.857 70 40 0 2 71 261 330 7.51e-11 62.0
Msa0439370 AT5G14130.2 31.651 218 124 3 83 275 118 335 1.01e-26 107
Msa0439370 AT5G14130.2 42.857 70 40 0 2 71 302 371 7.85e-11 62.4
Msa0439370 AT5G06720.1 34.091 220 117 5 84 275 78 297 1.14e-26 106
Msa0439370 AT5G42180.1 31.364 220 121 6 83 275 68 284 2.02e-26 105
Msa0439370 AT2G41480.1 34.884 215 115 7 83 274 74 286 4.26e-26 105
Msa0439370 AT1G30870.1 33.796 216 109 7 84 273 97 304 4.66e-26 105
Msa0439370 AT3G50990.1 35.747 221 111 10 84 275 87 305 1.09e-25 104
Msa0439370 AT4G08770.1 32.407 216 117 6 84 271 70 284 3.78e-25 102
Msa0439370 AT4G08770.1 41.860 86 46 2 2 84 255 339 3.32e-13 69.3
Msa0439370 AT3G32980.1 32.558 215 118 5 84 271 77 291 5.03e-25 102
Msa0439370 AT5G40150.1 31.925 213 122 5 84 273 78 290 7.07e-25 101
Msa0439370 AT5G40150.1 46.479 71 38 0 1 71 258 328 4.92e-12 65.5
Msa0439370 AT3G49960.1 34.389 221 116 8 84 275 73 293 7.17e-25 101
Msa0439370 AT2G18980.1 34.389 221 114 7 83 275 70 287 1.01e-24 101
Msa0439370 AT5G67400.1 33.784 222 116 8 84 275 73 293 1.08e-24 101
Msa0439370 AT3G49120.1 32.093 215 119 5 84 271 78 292 1.62e-24 101
Msa0439370 AT1G49570.1 36.161 224 108 9 84 275 94 314 2.00e-24 100
Msa0439370 AT4G08780.1 32.870 216 116 6 84 271 70 284 2.21e-24 100
Msa0439370 AT4G08780.1 39.535 86 48 2 2 84 255 339 3.45e-12 66.2
Msa0439370 AT2G38390.1 35.135 222 115 7 83 275 76 297 2.68e-24 100
Msa0439370 AT2G38390.1 45.946 74 38 1 2 73 262 335 1.51e-11 64.3
Msa0439370 AT3G21770.1 31.481 216 117 7 83 270 74 286 3.17e-24 100
Msa0439370 AT5G15180.1 29.461 241 134 6 63 269 48 286 4.13e-24 99.8
Msa0439370 AT3G49110.1 32.407 216 117 6 84 271 79 293 5.13e-24 99.8
Msa0439370 AT5G19880.1 35.426 223 113 7 84 275 71 293 8.58e-24 99.0
Msa0439370 AT5G19880.1 45.588 68 35 1 2 67 258 325 1.23e-11 64.3
Msa0439370 AT2G34060.1 32.258 217 117 5 83 269 87 303 1.08e-23 99.0
Msa0439370 AT4G37530.2 34.146 205 106 7 84 259 73 277 1.22e-23 97.4
Msa0439370 AT5G51890.1 32.110 218 123 6 83 275 71 288 1.82e-23 97.8
Msa0439370 AT2G38380.1 34.234 222 117 8 83 275 76 297 3.58e-23 97.4
Msa0439370 AT5G19890.1 33.333 219 114 6 84 273 76 291 1.87e-22 95.1
Msa0439370 AT5G58390.1 31.050 219 119 7 84 275 67 280 2.08e-22 94.7
Msa0439370 AT5G05340.1 30.374 214 126 4 84 275 76 288 4.81e-22 94.0
Msa0439370 AT4G33420.1 32.701 211 121 5 83 275 82 289 4.88e-22 94.0
Msa0439370 AT5G58400.1 32.227 211 115 6 84 269 76 283 6.03e-22 93.6
Msa0439370 AT5G58400.1 38.571 70 43 0 2 71 256 325 5.19e-11 62.4
Msa0439370 AT4G36430.1 30.909 220 121 7 83 273 75 292 6.72e-22 93.6
Msa0439370 AT4G36430.1 43.284 67 37 1 2 67 260 326 1.68e-11 63.9
Msa0439370 AT4G30170.1 29.864 221 124 6 83 275 72 289 8.24e-22 93.2
Msa0439370 AT5G24070.1 30.252 238 135 6 66 275 65 299 8.91e-22 93.6
Msa0439370 AT4G33420.2 32.701 211 121 5 83 275 129 336 1.08e-21 93.6
Msa0439370 AT5G66390.1 33.333 222 117 10 83 275 78 297 1.22e-21 92.8
Msa0439370 AT5G66390.1 43.284 67 37 1 2 67 263 329 5.77e-11 62.4
Msa0439370 AT4G16270.1 31.674 221 120 9 84 275 96 314 1.36e-21 93.2
Msa0439370 AT1G24110.1 29.730 222 125 8 83 275 67 286 1.41e-21 92.8
Msa0439370 AT1G24110.1 40.000 75 45 0 1 75 252 326 8.97e-11 62.0
Msa0439370 AT2G24800.1 30.769 221 122 7 83 275 76 293 1.46e-21 92.8
Msa0439370 AT2G24800.1 42.857 70 40 0 2 71 260 329 5.79e-14 71.2
Msa0439370 AT4G17690.1 33.796 216 120 7 83 275 71 286 1.56e-21 92.4
Msa0439370 AT5G64120.1 30.332 211 119 5 83 269 80 286 4.82e-21 91.3
Msa0439370 AT1G77100.1 32.212 208 123 4 83 272 69 276 6.82e-21 90.5
Msa0439370 AT2G18140.1 32.727 220 117 9 83 273 80 297 8.00e-21 90.9
Msa0439370 AT2G18140.1 41.667 72 41 1 2 72 265 336 5.40e-12 65.5
Msa0439370 AT1G05240.1 30.952 210 122 5 83 269 71 280 9.36e-21 90.5
Msa0439370 AT1G05250.1 30.952 210 122 5 83 269 71 280 9.36e-21 90.5
Msa0439370 AT5G47000.1 33.641 217 120 7 83 275 78 294 9.82e-21 90.5
Msa0439370 AT1G14540.1 31.925 213 124 6 84 275 67 279 9.87e-21 90.1
Msa0439370 AT1G14550.1 33.178 214 121 7 84 275 72 285 1.30e-20 90.1
Msa0439370 AT3G01190.1 30.622 209 122 5 83 269 71 278 1.43e-20 89.7
Msa0439370 AT5G39580.1 31.925 213 120 7 83 272 70 280 1.57e-20 89.7
Msa0439370 AT4G11290.1 30.833 240 131 7 71 275 50 289 1.69e-20 89.7
Msa0439370 AT2G18150.1 30.909 220 121 9 83 273 81 298 2.13e-20 89.7
Msa0439370 AT2G18150.1 40.278 72 42 1 2 72 266 337 3.23e-11 63.2
Msa0439370 AT1G05260.1 28.837 215 124 6 83 270 71 283 7.12e-20 87.8
Msa0439370 AT2G35380.1 31.481 216 115 8 84 268 76 289 2.15e-19 86.7
Msa0439370 AT2G22420.1 30.222 225 116 8 84 275 69 285 3.15e-19 86.3
Msa0439370 AT3G03670.1 27.727 220 130 6 83 275 68 285 8.84e-19 84.7
Msa0439370 AT4G21960.1 30.093 216 128 6 83 275 76 291 9.18e-19 84.7
Msa0439370 AT5G17820.1 29.954 217 120 6 83 275 69 277 9.36e-19 84.7
Msa0439370 AT5G17820.2 29.954 217 120 6 83 275 122 330 2.43e-18 84.0
Msa0439370 AT2G39040.1 28.507 221 126 7 83 272 91 310 3.99e-18 83.2
Msa0439370 AT4G31760.1 31.674 221 119 10 83 275 74 290 1.82e-17 81.3
Msa0439370 AT4G31760.1 40.000 70 42 0 2 71 257 326 1.32e-11 64.3
Msa0439370 AT2G35380.2 34.899 149 86 4 131 268 53 201 1.94e-17 80.1
Msa0439370 AT1G68850.1 27.876 226 128 7 83 275 75 298 2.36e-17 80.9
Msa0439370 AT1G34510.1 29.954 217 122 9 81 275 65 273 1.29e-16 78.6
Msa0439370 AT5G64100.1 29.524 210 118 6 84 269 83 286 2.05e-16 78.2
Msa0439370 AT5G64110.1 32.864 213 111 8 83 269 79 285 2.13e-16 78.2
Msa0439370 AT2G43480.1 27.178 287 164 11 23 273 20 297 2.97e-16 77.8
Msa0439370 AT1G44970.1 28.311 219 129 6 83 273 90 308 3.24e-16 77.8
Msa0439370 AT2G37130.2 27.477 222 131 8 81 275 42 260 6.11e-16 76.6
Msa0439370 AT2G37130.1 27.477 222 131 8 81 275 73 291 7.80e-16 76.6
Msa0439370 AT4G26010.1 31.628 215 117 10 83 275 67 273 1.94e-15 75.1
Msa0439370 AT4G25980.1 28.302 212 130 6 83 272 71 282 2.21e-15 75.5
Msa0439370 AT4G26010.2 31.628 215 117 10 83 275 95 301 2.24e-15 75.5
Msa0439370 AT3G17070.2 26.577 222 131 6 84 275 21 240 6.11e-15 73.6
Msa0439370 AT3G17070.2 42.424 66 38 0 2 67 207 272 1.01e-11 64.3
Msa0439370 AT3G17070.1 26.457 223 132 6 83 275 83 303 6.37e-15 73.9
Msa0439370 AT3G17070.1 42.424 66 38 0 2 67 270 335 1.71e-11 63.9

Find 57 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAGTTGTTTCTTGAAATT+TGG 0.098915 3_3:-5407212 None:intergenic
ACCTTAGATTTCCTATTATT+TGG 0.128939 3_3:-5400905 None:intergenic
CTTTCTGAGGCGCACACTTT+TGG 0.232366 3_3:+5407131 Msa0439370:CDS
TTCTTGAAATTTGGGTCTAT+TGG 0.284321 3_3:-5407203 None:intergenic
CGAGTTGTTTCTTGAAATTT+GGG 0.292061 3_3:-5407211 None:intergenic
TATTGGTGGGTTTGTATCAA+TGG 0.316149 3_3:-5407186 None:intergenic
GAAATCTAAGGTGGCATCTA+TGG 0.324726 3_3:+5400916 Msa0439370:CDS
TTCACAATCTCCTTAGTCTT+AGG 0.327909 3_3:-5400764 None:intergenic
TTCACAATCTCCTTAGTCTT+AGG 0.327909 3_3:-5407374 None:intergenic
TCCCAATGGTACATCAAAAT+CGG 0.361315 3_3:-5406985 None:intergenic
TCCAAATAATAGGAAATCTA+AGG 0.367020 3_3:+5400904 Msa0439370:CDS
TCCTGCCAACTTCGCCTTAA+GGG 0.372726 3_3:+5406043 Msa0439370:CDS
GTGTTCAGTGATTGATCATT+CGG 0.377475 3_3:-5407245 None:intergenic
TTGAAATTTGGGTCTATTGG+TGG 0.400100 3_3:-5407200 None:intergenic
TTGAATAGCCTCTTCCCTTA+AGG 0.400879 3_3:-5406057 None:intergenic
TCCCTTAAGGCGAAGTTGGC+AGG 0.412132 3_3:-5406044 None:intergenic
GTGCAGTTGCATTGAAGGTT+AGG 0.416101 3_3:-5407019 None:intergenic
CCCAATGGTACATCAAAATC+GGG 0.416121 3_3:-5406984 None:intergenic
GTCTGGTGCAGTTGCATTGA+AGG 0.420651 3_3:-5407024 None:intergenic
TCCGTTCTTTCAAATGGTAC+TGG 0.425247 3_3:-5407053 None:intergenic
TGTTCATCCGTTCTTTCAAA+TGG 0.431405 3_3:-5407059 None:intergenic
ATCCTGCCAACTTCGCCTTA+AGG 0.436419 3_3:+5406042 Msa0439370:CDS
TGAAATTTGGGTCTATTGGT+GGG 0.438967 3_3:-5407199 None:intergenic
AGCAAGTCATCCTAAGACTA+AGG 0.441256 3_3:+5407364 Msa0439370:CDS
CTCTTCCCTTAAGGCGAAGT+TGG 0.444275 3_3:-5406048 None:intergenic
GGCAAGTCATCCTAAGACTA+AGG 0.457751 3_3:+5400754 Msa0439370:CDS
AATGGTACTGGAAGATTGTC+TGG 0.471550 3_3:-5407041 None:intergenic
TTTGAATTTGTACAGCTTGG+AGG 0.486572 3_3:+5406960 Msa0439370:intron
ATTGAATAGTGTAGGACAAT+GGG 0.487933 3_3:-5407159 None:intergenic
ATCACTGAACACAATTAACT+TGG 0.504188 3_3:+5407256 Msa0439370:CDS
TAGTCTTAGGATGACTTGCT+AGG 0.505832 3_3:-5407361 None:intergenic
AGGCTGTCTCTTCTTCCCAA+TGG 0.513651 3_3:-5406999 None:intergenic
CACATGTTATCGAATTTCGT+TGG 0.515740 3_3:-5407290 None:intergenic
CATTAACCTCTTGAATCACC+AGG 0.518011 3_3:+5400706 Msa0439370:CDS
TCCAGTACCATTTGAAAGAA+CGG 0.520517 3_3:+5407052 Msa0439370:CDS
GGTGGCATCTATGGTGGAAG+AGG 0.527491 3_3:+5400925 Msa0439370:CDS
TATTAATCTCTTGAATCACC+AGG 0.545087 3_3:+5407316 Msa0439370:CDS
CTTTCTGGTTAGAAGCAAAG+AGG 0.545522 3_3:-5400787 None:intergenic
GTTTACATCGGATCAAGACT+TGG 0.546163 3_3:+5400733 Msa0439370:CDS
CAACTTCGCCTTAAGGGAAG+AGG 0.550698 3_3:+5406049 Msa0439370:CDS
CATTCTAGTTAGAAGCAAAG+AGG 0.554926 3_3:-5407397 None:intergenic
GAATTGAAACAGGGATGTGA+TGG 0.557716 3_3:+5405975 Msa0439370:intron
ATATTTAGTTGCTCTTTCTG+AGG 0.561477 3_3:+5407118 Msa0439370:CDS
AGAAAGAGCAACTAAATATG+TGG 0.561931 3_3:-5407114 None:intergenic
TAATTCGTAGACAGTGTCCA+CGG 0.571658 3_3:+5406102 Msa0439370:CDS
GATTGAATAGTGTAGGACAA+TGG 0.573662 3_3:-5407160 None:intergenic
ATCTAAGGTGGCATCTATGG+TGG 0.582875 3_3:+5400919 Msa0439370:CDS
AATTCGTAGACAGTGTCCAC+GGG 0.597781 3_3:+5406103 Msa0439370:CDS
ATGGTTCGATTGAATAGTGT+AGG 0.630958 3_3:-5407167 None:intergenic
AAATAATAGGAAATCTAAGG+TGG 0.648910 3_3:+5400907 Msa0439370:CDS
ACACACCCTGGTGATTCAAG+AGG 0.659078 3_3:-5400712 None:intergenic
TCACCAGGGTGTGTTTACAT+CGG 0.667869 3_3:+5400721 Msa0439370:CDS
GATCCGATGTAAACACACCC+TGG 0.671264 3_3:-5400724 None:intergenic
ATTAATCTCTTGAATCACCA+GGG 0.684393 3_3:+5407317 Msa0439370:CDS
GATCAGATGTAAACACACCC+TGG 0.689585 3_3:-5407334 None:intergenic
ATTAACCTCTTGAATCACCA+GGG 0.706268 3_3:+5400707 Msa0439370:CDS
CCAATGGTACATCAAAATCG+GGG 0.716165 3_3:-5406983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTATTATTAATTTTTT+AGG - chr3_3:5401075-5401094 None:intergenic 0.0%
!!! TATTATTAATTTTTTAGGTA+AGG - chr3_3:5401070-5401089 None:intergenic 10.0%
!!! CTTTTATTAATTTTAAAACA+TGG - chr3_3:5402135-5402154 None:intergenic 10.0%
!!! TATGTTGATAATATATTTTT+TGG + chr3_3:5402298-5402317 Msa0439370:intron 10.0%
!!! AATTTGGTTTTTTATTTTTA+CGG + chr3_3:5404344-5404363 Msa0439370:intron 10.0%
!! TTAAAAAAATAAAACTATTC+GGG - chr3_3:5404398-5404417 None:intergenic 10.0%
!!! GAATAGTTTTATTTTTTTAA+AGG + chr3_3:5404398-5404417 Msa0439370:intron 10.0%
!!! ATTTTAGGATTAAATTATTT+TGG + chr3_3:5404964-5404983 Msa0439370:intron 10.0%
!!! ATTATCTTTATCTTTTAAAT+AGG - chr3_3:5406534-5406553 None:intergenic 10.0%
!! TAAATCAAGAAGATATATTA+AGG - chr3_3:5401323-5401342 None:intergenic 15.0%
!! ATTCCCTATTAAAAAAATTA+GGG - chr3_3:5401403-5401422 None:intergenic 15.0%
!! AAATTAATAAAAGCTCTATA+TGG + chr3_3:5402142-5402161 Msa0439370:intron 15.0%
!! TATCAATATATCAAATTGAT+TGG - chr3_3:5402269-5402288 None:intergenic 15.0%
!!! TTTAGTCAAATTTTTGTTTA+TGG + chr3_3:5403124-5403143 Msa0439370:intron 15.0%
!!! TTTTGTTTATGGTTTTATTT+CGG + chr3_3:5403135-5403154 Msa0439370:intron 15.0%
!! ACAATAAAAAAAAACCAATA+AGG - chr3_3:5403617-5403636 None:intergenic 15.0%
!!! TTTTTTTATTGTTTTCGATT+CGG + chr3_3:5403625-5403644 Msa0439370:intron 15.0%
!!! ATTTTTAAATATGTTTCACA+AGG + chr3_3:5403895-5403914 Msa0439370:intron 15.0%
!! TAGCAAAATAAATTATCTAA+AGG + chr3_3:5404535-5404554 Msa0439370:intron 15.0%
!! TTACCAAATAAAAAAATCAT+TGG + chr3_3:5404595-5404614 Msa0439370:intron 15.0%
!!! AATCCAATGATTTTTTTATT+TGG - chr3_3:5404601-5404620 None:intergenic 15.0%
!!! ATGATAGTTTTATTAATGAA+AGG + chr3_3:5404665-5404684 Msa0439370:intron 15.0%
!!! TGATAGTTTTATTAATGAAA+GGG + chr3_3:5404666-5404685 Msa0439370:intron 15.0%
!!! TATTTTATAAAGATGGTAAA+GGG - chr3_3:5405840-5405859 None:intergenic 15.0%
!!! AACTAACTATTTTATAAAGA+TGG - chr3_3:5405847-5405866 None:intergenic 15.0%
!! CGTAAATTATATGTAAATAA+AGG - chr3_3:5405938-5405957 None:intergenic 15.0%
!!! ATTTGTTAAAAAACTCTTTC+TGG - chr3_3:5400805-5400824 None:intergenic 20.0%
!!! TGTTATGTTATGTTATTTCA+CGG + chr3_3:5400988-5401007 Msa0439370:intron 20.0%
!! TCAAAAAAGAGGTTATTAAA+AGG - chr3_3:5401276-5401295 None:intergenic 20.0%
!!! TTTAATAACCTCTTTTTTGA+AGG + chr3_3:5401276-5401295 Msa0439370:intron 20.0%
!!! AACACCCTAATTTTTTTAAT+AGG + chr3_3:5401396-5401415 Msa0439370:intron 20.0%
!!! ACACCCTAATTTTTTTAATA+GGG + chr3_3:5401397-5401416 Msa0439370:intron 20.0%
!! CATTCCCTATTAAAAAAATT+AGG - chr3_3:5401404-5401423 None:intergenic 20.0%
!!! AGATTATGATAATCCTTTTT+TGG - chr3_3:5401522-5401541 None:intergenic 20.0%
!! CTAAGTTTGAAAATAAAGTT+TGG + chr3_3:5401790-5401809 Msa0439370:intron 20.0%
!!! TATCAAATTCATTTTGCATA+AGG - chr3_3:5402360-5402379 None:intergenic 20.0%
!! ACCGTTAGATTAAAAAATTA+TGG + chr3_3:5402712-5402731 Msa0439370:intron 20.0%
!!! CCCATAATTTTTTAATCTAA+CGG - chr3_3:5402716-5402735 None:intergenic 20.0%
!! CCGTTAGATTAAAAAATTAT+GGG + chr3_3:5402713-5402732 Msa0439370:intron 20.0%
!! TATGGGAATCATAAATTAAA+TGG + chr3_3:5402730-5402749 Msa0439370:intron 20.0%
!! TAAACGTAAACAAAAAAGAA+GGG + chr3_3:5402789-5402808 Msa0439370:intron 20.0%
!!! TTTATCATTGATTAAGTTTG+GGG - chr3_3:5403482-5403501 None:intergenic 20.0%
!!! GTTTATCATTGATTAAGTTT+GGG - chr3_3:5403483-5403502 None:intergenic 20.0%
!!! AGTTTATCATTGATTAAGTT+TGG - chr3_3:5403484-5403503 None:intergenic 20.0%
!!! AAGATAATCAGTATTGATAA+GGG - chr3_3:5403726-5403745 None:intergenic 20.0%
!!! TAAGATAATCAGTATTGATA+AGG - chr3_3:5403727-5403746 None:intergenic 20.0%
!! AATAAACAAAAATGAGGAAA+GGG - chr3_3:5404190-5404209 None:intergenic 20.0%
!! AAATAAACAAAAATGAGGAA+AGG - chr3_3:5404191-5404210 None:intergenic 20.0%
!!! TTTCCTCATTTTTGTTTATT+TGG + chr3_3:5404190-5404209 Msa0439370:intron 20.0%
!! CCAAATTTATGTATGAAAAA+TGG - chr3_3:5404331-5404350 None:intergenic 20.0%
!!! CCATTTTTCATACATAAATT+TGG + chr3_3:5404328-5404347 Msa0439370:intron 20.0%
!!! TTTTATTTTTACGGTAAGTA+TGG + chr3_3:5404353-5404372 Msa0439370:intron 20.0%
!!! ACACATTTTATTTTGAAAGA+CGG + chr3_3:5404429-5404448 Msa0439370:intron 20.0%
!! TAATATTTAGTTAACCACAA+CGG - chr3_3:5404488-5404507 None:intergenic 20.0%
!! ATATGATAGAAATGAAAAGA+GGG + chr3_3:5404913-5404932 Msa0439370:intron 20.0%
!!! GAATGAATGTATGAAATTTT+AGG + chr3_3:5404949-5404968 Msa0439370:intron 20.0%
!!! TATTTTGGTTACACAATTTT+TGG + chr3_3:5404979-5404998 Msa0439370:intron 20.0%
!!! CTCAATGATATTTTAAGAAA+AGG + chr3_3:5405083-5405102 Msa0439370:intron 20.0%
!! TTGCGTTAATTATATTATTC+TGG - chr3_3:5405127-5405146 None:intergenic 20.0%
!! TATTTATAGATGGATATTGA+GGG - chr3_3:5405264-5405283 None:intergenic 20.0%
!! ATATTTATAGATGGATATTG+AGG - chr3_3:5405265-5405284 None:intergenic 20.0%
!! TGGATGAAATTCAATAAATA+AGG + chr3_3:5405671-5405690 Msa0439370:intron 20.0%
!! GGATGAAATTCAATAAATAA+GGG + chr3_3:5405672-5405691 Msa0439370:intron 20.0%
!!! TAACATTTTTTCTATATCTC+AGG - chr3_3:5405757-5405776 None:intergenic 20.0%
!!! TTTCAAAAATTAGTCTACAA+TGG + chr3_3:5405813-5405832 Msa0439370:intron 20.0%
!!! CTATTTTATAAAGATGGTAA+AGG - chr3_3:5405841-5405860 None:intergenic 20.0%
!! TTTCCTTATGATAAAATAAG+AGG + chr3_3:5406495-5406514 Msa0439370:intron 20.0%
!!! TTACCTCTTATTTTATCATA+AGG - chr3_3:5406501-5406520 None:intergenic 20.0%
!!! ACATGAGATTAAATTTTTAC+TGG + chr3_3:5406784-5406803 Msa0439370:intron 20.0%
!!! ATTTGCTAATGCTTTTGTTA+AGG + chr3_3:5400823-5400842 Msa0439370:CDS 25.0%
!!! TTTTGTTAAGGTTAGTCAAT+TGG + chr3_3:5400835-5400854 Msa0439370:CDS 25.0%
! TCCAAATAATAGGAAATCTA+AGG + chr3_3:5400904-5400923 Msa0439370:CDS 25.0%
! ACCTTAGATTTCCTATTATT+TGG - chr3_3:5400908-5400927 None:intergenic 25.0%
! AAATAATAGGAAATCTAAGG+TGG + chr3_3:5400907-5400926 Msa0439370:CDS 25.0%
!!! GTTATGTTATGTTATTTCAC+GGG + chr3_3:5400989-5401008 Msa0439370:intron 25.0%
!!! TTATGTTATGTTATTTCACG+GGG + chr3_3:5400990-5401009 Msa0439370:intron 25.0%
!!! ATTAATTTTTTAGGTAAGGC+AGG - chr3_3:5401066-5401085 None:intergenic 25.0%
! TGTATGAAATGTGTAATAAG+TGG + chr3_3:5401185-5401204 Msa0439370:intron 25.0%
!!! AAATATGTTCGTTTTTACAG+TGG + chr3_3:5401365-5401384 Msa0439370:intron 25.0%
!! TCGAAAACATTTTCCAAAAA+AGG + chr3_3:5401506-5401525 Msa0439370:intron 25.0%
! TAAACCATCATCAAATAAGA+TGG + chr3_3:5401837-5401856 Msa0439370:intron 25.0%
! AAACCATCATCAAATAAGAT+GGG + chr3_3:5401838-5401857 Msa0439370:intron 25.0%
!! AATCTATCATATAGAGCTTT+TGG - chr3_3:5402181-5402200 None:intergenic 25.0%
!! AGCTCTTTTCTTATTGAAAA+TGG + chr3_3:5402202-5402221 Msa0439370:intron 25.0%
! AACAAATAAAAAGATGTGCA+AGG + chr3_3:5402324-5402343 Msa0439370:intron 25.0%
!!! GAGAACTTAGATATTTTTTC+TGG + chr3_3:5402392-5402411 Msa0439370:intron 25.0%
!!! CTTAGATATTTTTTCTGGAT+TGG + chr3_3:5402397-5402416 Msa0439370:intron 25.0%
!! ATTTATCTATACGGGTTTTT+CGG - chr3_3:5402562-5402581 None:intergenic 25.0%
! GTTTGCATATTTATCTATAC+GGG - chr3_3:5402570-5402589 None:intergenic 25.0%
! CGTTTGCATATTTATCTATA+CGG - chr3_3:5402571-5402590 None:intergenic 25.0%
! CGTATAGATAAATATGCAAA+CGG + chr3_3:5402569-5402588 Msa0439370:intron 25.0%
! GTATAGATAAATATGCAAAC+GGG + chr3_3:5402570-5402589 Msa0439370:intron 25.0%
! GGAATCATAAATTAAATGGA+TGG + chr3_3:5402734-5402753 Msa0439370:intron 25.0%
! GTAAACGTAAACAAAAAAGA+AGG + chr3_3:5402788-5402807 Msa0439370:intron 25.0%
!! CTAAAGTTGTATTGAGTTTT+GGG - chr3_3:5403035-5403054 None:intergenic 25.0%
!!! TCTAAAGTTGTATTGAGTTT+TGG - chr3_3:5403036-5403055 None:intergenic 25.0%
!! GGTTGAAATAAAATCCTTTT+CGG + chr3_3:5403249-5403268 Msa0439370:intron 25.0%
!! AACTTGTAAAAAGCATAACA+TGG + chr3_3:5403500-5403519 Msa0439370:intron 25.0%
! TTAATAAAAAGAGAACTGCT+TGG + chr3_3:5403695-5403714 Msa0439370:intron 25.0%
!!! AGATAATCAGTATTGATAAG+GGG - chr3_3:5403725-5403744 None:intergenic 25.0%
! CAATAAAATAGTAAGTGTTC+AGG + chr3_3:5403830-5403849 Msa0439370:intron 25.0%
! TAAAACATTAACACTGTGTT+TGG + chr3_3:5403962-5403981 Msa0439370:intron 25.0%
! TGTTTGGTTGAAAAGAAATA+AGG + chr3_3:5403978-5403997 Msa0439370:intron 25.0%
!! TTTCTCTCTTCTTTATTTCT+TGG - chr3_3:5404063-5404082 None:intergenic 25.0%
! AAGAGAGAAAAACATTATTG+TGG + chr3_3:5404073-5404092 Msa0439370:intron 25.0%
! AGAGAGAAAAACATTATTGT+GGG + chr3_3:5404074-5404093 Msa0439370:intron 25.0%
! CAATGGAAAGTGAAAATAAA+AGG - chr3_3:5404154-5404173 None:intergenic 25.0%
! TTGCCAAATAAACAAAAATG+AGG - chr3_3:5404196-5404215 None:intergenic 25.0%
! GATATGATAGAAATGAAAAG+AGG + chr3_3:5404912-5404931 Msa0439370:intron 25.0%
! ACTTGCATGATATTTATAGA+TGG - chr3_3:5405274-5405293 None:intergenic 25.0%
! ACCAATTAGTAAACCAAAAA+TGG + chr3_3:5405309-5405328 Msa0439370:intron 25.0%
!!! ACCATTTTTGGTTTACTAAT+TGG - chr3_3:5405313-5405332 None:intergenic 25.0%
! TTAGTAAACCAAAAATGGTA+AGG + chr3_3:5405314-5405333 Msa0439370:intron 25.0%
! TAGTAAACCAAAAATGGTAA+GGG + chr3_3:5405315-5405334 Msa0439370:intron 25.0%
!!! TCCTTGATTTTTTTTTACCT+GGG - chr3_3:5405576-5405595 None:intergenic 25.0%
!!! TTCCTTGATTTTTTTTTACC+TGG - chr3_3:5405577-5405596 None:intergenic 25.0%
!!! ATGTTGATTTGAATTGAAAC+AGG + chr3_3:5405965-5405984 Msa0439370:intron 25.0%
!!! TGTTGATTTGAATTGAAACA+GGG + chr3_3:5405966-5405985 Msa0439370:intron 25.0%
! AATGACTAACTTCAAGTATT+TGG - chr3_3:5406321-5406340 None:intergenic 25.0%
!!! TTCAATGTGTTATTTGATCA+CGG + chr3_3:5406841-5406860 Msa0439370:intron 25.0%
! AGAAAATGTGAAATAATGCT+AGG - chr3_3:5406919-5406938 None:intergenic 25.0%
! TTATTTGAATTTGTACAGCT+TGG + chr3_3:5406957-5406976 Msa0439370:intron 25.0%
! CATGTTTTGCTCCAAATAAT+AGG + chr3_3:5400894-5400913 Msa0439370:CDS 30.0%
!! TTCTTCACCAAACTTGTTTT+TGG - chr3_3:5401866-5401885 None:intergenic 30.0%
! TGAATTTGATAAGAGCATGA+TGG + chr3_3:5402369-5402388 Msa0439370:intron 30.0%
! GAATTTGATAAGAGCATGAT+GGG + chr3_3:5402370-5402389 Msa0439370:intron 30.0%
GAAATCAAGCAACTTTCTAA+TGG + chr3_3:5402419-5402438 Msa0439370:intron 30.0%
!! TCTAATGGTATTTTGAGTGT+AGG + chr3_3:5402434-5402453 Msa0439370:intron 30.0%
! TTTATCTATACGGGTTTTTC+GGG - chr3_3:5402561-5402580 None:intergenic 30.0%
TGAGAGAATAACAGTAGAAA+GGG - chr3_3:5402816-5402835 None:intergenic 30.0%
GAGATGAAAATATGAGAAAG+AGG - chr3_3:5402930-5402949 None:intergenic 30.0%
AAGAGATTGAGAGATACAAT+TGG - chr3_3:5402971-5402990 None:intergenic 30.0%
AATTGTATCTCTCAATCTCT+TGG + chr3_3:5402970-5402989 Msa0439370:intron 30.0%
!!! GGCATATTTTAAAGCAAAAG+GGG - chr3_3:5403014-5403033 None:intergenic 30.0%
!!! GGGCATATTTTAAAGCAAAA+GGG - chr3_3:5403015-5403034 None:intergenic 30.0%
!!! TGGGCATATTTTAAAGCAAA+AGG - chr3_3:5403016-5403035 None:intergenic 30.0%
CTATTGTCTATCTTGCAATT+AGG - chr3_3:5403333-5403352 None:intergenic 30.0%
TGAGAATACAATGGAAATCT+AGG - chr3_3:5403362-5403381 None:intergenic 30.0%
AGAGAAATAGAGTAGATTTG+AGG - chr3_3:5404768-5404787 None:intergenic 30.0%
GAAATTGAGAAGAGAGAAAT+AGG - chr3_3:5404821-5404840 None:intergenic 30.0%
! TTTCCTCTAAGAGATTATCA+AGG + chr3_3:5405407-5405426 Msa0439370:intron 30.0%
GACTAGATTGGAATTACTAT+TGG + chr3_3:5405446-5405465 Msa0439370:intron 30.0%
TTTCAAACACATCTTCAAGA+TGG - chr3_3:5405499-5405518 None:intergenic 30.0%
GATGTGTTTGAAAAAGATAG+TGG + chr3_3:5405506-5405525 Msa0439370:intron 30.0%
TCCCAGGTAAAAAAAAATCA+AGG + chr3_3:5405572-5405591 Msa0439370:intron 30.0%
AGTTAGTGAAGTAGTTAAGT+TGG + chr3_3:5405651-5405670 Msa0439370:intron 30.0%
CTATCCTTAACACAATTATG+AGG + chr3_3:5405897-5405916 Msa0439370:intron 30.0%
TGAACCTCATAATTGTGTTA+AGG - chr3_3:5405904-5405923 None:intergenic 30.0%
! TTTTCGTTTGCCTCATTTTA+AGG + chr3_3:5406233-5406252 Msa0439370:intron 30.0%
! TCTAAGATAAGGATGATCTT+AGG - chr3_3:5406449-5406468 None:intergenic 30.0%
TCTTTATCAGAATTCGAACT+CGG - chr3_3:5406647-5406666 None:intergenic 30.0%
! ATATGTGGCATCAAATTTTC+TGG - chr3_3:5407102-5407121 None:intergenic 30.0%
AGAAAGAGCAACTAAATATG+TGG - chr3_3:5407117-5407136 None:intergenic 30.0%
ATATTTAGTTGCTCTTTCTG+AGG + chr3_3:5407118-5407137 Msa0439370:CDS 30.0%
ATTGAATAGTGTAGGACAAT+GGG - chr3_3:5407162-5407181 None:intergenic 30.0%
TTCTTGAAATTTGGGTCTAT+TGG - chr3_3:5407206-5407225 None:intergenic 30.0%
!! CGAGTTGTTTCTTGAAATTT+GGG - chr3_3:5407214-5407233 None:intergenic 30.0%
!! TCGAGTTGTTTCTTGAAATT+TGG - chr3_3:5407215-5407234 None:intergenic 30.0%
ATCACTGAACACAATTAACT+TGG + chr3_3:5407256-5407275 Msa0439370:CDS 30.0%
TATTAATCTCTTGAATCACC+AGG + chr3_3:5407316-5407335 Msa0439370:CDS 30.0%
ATTAATCTCTTGAATCACCA+GGG + chr3_3:5407317-5407336 Msa0439370:CDS 30.0%
ATTAACCTCTTGAATCACCA+GGG + chr3_3:5400707-5400726 Msa0439370:CDS 35.0%
! TTCACAATCTCCTTAGTCTT+AGG - chr3_3:5400767-5400786 None:intergenic 35.0%
!!! AGTCAATTGGATGTTTTGAC+TGG + chr3_3:5400848-5400867 Msa0439370:CDS 35.0%
!!! GATGTTTTGACTGGAAATCA+AGG + chr3_3:5400857-5400876 Msa0439370:CDS 35.0%
! GTAGTTTTTCTCAATGGGAT+TGG - chr3_3:5401099-5401118 None:intergenic 35.0%
ATCCCATTGAGAAAAACTAC+TGG + chr3_3:5401099-5401118 Msa0439370:intron 35.0%
! AGCCAGTAGTTTTTCTCAAT+GGG - chr3_3:5401104-5401123 None:intergenic 35.0%
! AAGCCAGTAGTTTTTCTCAA+TGG - chr3_3:5401105-5401124 None:intergenic 35.0%
!! GAAAAACTACTGGCTTAAGT+AGG + chr3_3:5401109-5401128 Msa0439370:intron 35.0%
! ACTGGCTTAAGTAGGTAATA+AGG + chr3_3:5401117-5401136 Msa0439370:intron 35.0%
CTGGCTTAAGTAGGTAATAA+GGG + chr3_3:5401118-5401137 Msa0439370:intron 35.0%
ATAAGTGGCTAATGAGAGTA+TGG + chr3_3:5401200-5401219 Msa0439370:intron 35.0%
ACTCAAGACCTTCAAAAAAG+AGG - chr3_3:5401287-5401306 None:intergenic 35.0%
ATCGTGAATTCGTTTGTGTA+AGG - chr3_3:5401451-5401470 None:intergenic 35.0%
CATCCACATGAGAAAATCAT+AGG + chr3_3:5401627-5401646 Msa0439370:intron 35.0%
! CTTCCTATGATTTTCTCATG+TGG - chr3_3:5401633-5401652 None:intergenic 35.0%
ATATGAGTCAAACATGTCCA+TGG + chr3_3:5401689-5401708 Msa0439370:intron 35.0%
TCATTCTGAACCAAAATCCA+TGG + chr3_3:5401716-5401735 Msa0439370:intron 35.0%
! ATGACTTCATCCATGGATTT+TGG - chr3_3:5401729-5401748 None:intergenic 35.0%
ATCAATGATGACTTCATCCA+TGG - chr3_3:5401736-5401755 None:intergenic 35.0%
AACTACGAGGATTAGAAACA+AGG - chr3_3:5401818-5401837 None:intergenic 35.0%
!! TTGATGATGGTTTAACTACG+AGG - chr3_3:5401831-5401850 None:intergenic 35.0%
ATCAGAAACAATGCTAGACT+TGG + chr3_3:5401895-5401914 Msa0439370:intron 35.0%
CAAGGCTACAATCAATATGA+TGG + chr3_3:5401920-5401939 Msa0439370:intron 35.0%
! ACACTTTTACACAAGTAGCA+AGG + chr3_3:5401957-5401976 Msa0439370:intron 35.0%
TTCTCTTGATTGATGAATCC+AGG - chr3_3:5402106-5402125 None:intergenic 35.0%
AGATAAATATGCAAACGGGT+AGG + chr3_3:5402574-5402593 Msa0439370:intron 35.0%
CAGTTCTGTGTGGTTTAAAA+TGG + chr3_3:5402633-5402652 Msa0439370:intron 35.0%
! TCTGTGTGGTTTAAAATGGT+CGG + chr3_3:5402637-5402656 Msa0439370:intron 35.0%
TTAATCTAACGGTGCTTGTT+CGG - chr3_3:5402705-5402724 None:intergenic 35.0%
GTGAGAGAATAACAGTAGAA+AGG - chr3_3:5402817-5402836 None:intergenic 35.0%
GAAAATATGAGAAAGAGGAG+CGG - chr3_3:5402925-5402944 None:intergenic 35.0%
!! ATCTAGCCAAGTATTGATGA+AGG + chr3_3:5403055-5403074 Msa0439370:intron 35.0%
!! TCTAGCCAAGTATTGATGAA+GGG + chr3_3:5403056-5403075 Msa0439370:intron 35.0%
AACATCCCTTCATCAATACT+TGG - chr3_3:5403064-5403083 None:intergenic 35.0%
CAAAAACAAGTTAGCAGCTT+TGG - chr3_3:5403104-5403123 None:intergenic 35.0%
!!! TGGTTTTATTTCGGCATTCA+CGG + chr3_3:5403144-5403163 Msa0439370:intron 35.0%
CCTTGCAGATTTGATATCTT+CGG + chr3_3:5403274-5403293 Msa0439370:intron 35.0%
TCCATTGTATTCTCATGATG+CGG + chr3_3:5403367-5403386 Msa0439370:intron 35.0%
AGAAAATGGAGCAAAAACCA+AGG - chr3_3:5403432-5403451 None:intergenic 35.0%
!! TATAGTCATAACGGACATTC+TGG - chr3_3:5403459-5403478 None:intergenic 35.0%
! AGTTTGGGGTATAGTCATAA+CGG - chr3_3:5403468-5403487 None:intergenic 35.0%
AACCAGTAATGCAAACAAGT+GGG - chr3_3:5403667-5403686 None:intergenic 35.0%
TAACCAGTAATGCAAACAAG+TGG - chr3_3:5403668-5403687 None:intergenic 35.0%
! CTTGTTTGCATTACTGGTTA+AGG + chr3_3:5403668-5403687 Msa0439370:intron 35.0%
GATATCAAACTTCTCCTGTT+TGG + chr3_3:5404033-5404052 Msa0439370:intron 35.0%
CGAAGAAAGATAAAAGTGGT+GGG - chr3_3:5404101-5404120 None:intergenic 35.0%
TCAGCGAAGAAAGATAAAAG+TGG - chr3_3:5404105-5404124 None:intergenic 35.0%
AAATAAAAGGACCTTTCTCC+TGG - chr3_3:5404141-5404160 None:intergenic 35.0%
ATTGTATACATCTTCCGTTG+TGG + chr3_3:5404471-5404490 Msa0439370:intron 35.0%
!! AGTAGATTTGAGGTGTTGTT+TGG - chr3_3:5404758-5404777 None:intergenic 35.0%
GAAATAGGTGAGAGAGAATA+TGG - chr3_3:5404806-5404825 None:intergenic 35.0%
TTCTATTTCCTTCTCTCTCA+GGG - chr3_3:5404862-5404881 None:intergenic 35.0%
TTTCTATTTCCTTCTCTCTC+AGG - chr3_3:5404863-5404882 None:intergenic 35.0%
ATGTGTATACATGCACGTTA+TGG + chr3_3:5405037-5405056 Msa0439370:intron 35.0%
ATCTTATCTTGTCTCCTAGT+TGG + chr3_3:5405186-5405205 Msa0439370:intron 35.0%
! CTACTAACCCTTACCATTTT+TGG - chr3_3:5405325-5405344 None:intergenic 35.0%
!! GATGGATCGATTTTGTTGAA+CGG + chr3_3:5405993-5406012 Msa0439370:CDS 35.0%
! TAGAGCACAGAGATTTTCAA+GGG - chr3_3:5406084-5406103 None:intergenic 35.0%
! TTAGAGCACAGAGATTTTCA+AGG - chr3_3:5406085-5406104 None:intergenic 35.0%
AAAATAGATGTAGAACCCGA+AGG - chr3_3:5406284-5406303 None:intergenic 35.0%
TGATCTTAGGACTAAAAGAG+CGG - chr3_3:5406436-5406455 None:intergenic 35.0%
! TGATGCACAAGTCTAAGATA+AGG - chr3_3:5406460-5406479 None:intergenic 35.0%
TAAAACATCTTTCGTAGCAC+TGG + chr3_3:5406569-5406588 Msa0439370:intron 35.0%
GCTCAAGTAGTTTATGTTGA+AGG + chr3_3:5406601-5406620 Msa0439370:intron 35.0%
GTAGTTTATGTTGAAGGAGT+TGG + chr3_3:5406607-5406626 Msa0439370:intron 35.0%
ATAGAGTAGTTGCTATAGCT+AGG - chr3_3:5406729-5406748 None:intergenic 35.0%
ATAATGCTAGGAATACGTAG+AGG - chr3_3:5406907-5406926 None:intergenic 35.0%
TTTGAATTTGTACAGCTTGG+AGG + chr3_3:5406960-5406979 Msa0439370:intron 35.0%
TCCCAATGGTACATCAAAAT+CGG - chr3_3:5406988-5407007 None:intergenic 35.0%
TCCAGTACCATTTGAAAGAA+CGG + chr3_3:5407052-5407071 Msa0439370:CDS 35.0%
TGTTCATCCGTTCTTTCAAA+TGG - chr3_3:5407062-5407081 None:intergenic 35.0%
GATTGAATAGTGTAGGACAA+TGG - chr3_3:5407163-5407182 None:intergenic 35.0%
ATGGTTCGATTGAATAGTGT+AGG - chr3_3:5407170-5407189 None:intergenic 35.0%
!! TATTGGTGGGTTTGTATCAA+TGG - chr3_3:5407189-5407208 None:intergenic 35.0%
TGAAATTTGGGTCTATTGGT+GGG - chr3_3:5407202-5407221 None:intergenic 35.0%
TTGAAATTTGGGTCTATTGG+TGG - chr3_3:5407203-5407222 None:intergenic 35.0%
GTGTTCAGTGATTGATCATT+CGG - chr3_3:5407248-5407267 None:intergenic 35.0%
CACATGTTATCGAATTTCGT+TGG - chr3_3:5407293-5407312 None:intergenic 35.0%
! TTCACAATCTCCTTAGTCTT+AGG - chr3_3:5400767-5400786 None:intergenic 35.0%
CATTAACCTCTTGAATCACC+AGG + chr3_3:5400706-5400725 Msa0439370:CDS 40.0%
GTTTACATCGGATCAAGACT+TGG + chr3_3:5400733-5400752 Msa0439370:CDS 40.0%
!! CTTTCTGGTTAGAAGCAAAG+AGG - chr3_3:5400790-5400809 None:intergenic 40.0%
! GAAATCTAAGGTGGCATCTA+TGG + chr3_3:5400916-5400935 Msa0439370:CDS 40.0%
ATAGACTTGTGTGCACAATG+TGG - chr3_3:5401230-5401249 None:intergenic 40.0%
TCTACCAATCTCCAACTCTT+TGG - chr3_3:5401603-5401622 None:intergenic 40.0%
TGGTTCAGAATGAGATACCA+TGG - chr3_3:5401709-5401728 None:intergenic 40.0%
! GCACCCATCTTATTTGATGA+TGG - chr3_3:5401844-5401863 None:intergenic 40.0%
ATGGGTGCCAAAAACAAGTT+TGG + chr3_3:5401856-5401875 Msa0439370:intron 40.0%
GTTTATGTTCATCAACCACC+TGG + chr3_3:5402085-5402104 Msa0439370:intron 40.0%
TCTTGATTGATGAATCCAGG+TGG - chr3_3:5402103-5402122 None:intergenic 40.0%
!!! TCATATAGAGCTTTTGGAGC+TGG - chr3_3:5402175-5402194 None:intergenic 40.0%
AAATGGTCGGTATCAGTTGT+TGG + chr3_3:5402650-5402669 Msa0439370:intron 40.0%
! TTAGATGCACTCTCTGGAAA+AGG + chr3_3:5402758-5402777 Msa0439370:intron 40.0%
! TAGATGCACTCTCTGGAAAA+GGG + chr3_3:5402759-5402778 Msa0439370:intron 40.0%
AAAAGGGGAGATGATTGATG+CGG - chr3_3:5402999-5403018 None:intergenic 40.0%
AAATCTGCAAGGAACCGAAA+AGG - chr3_3:5403266-5403285 None:intergenic 40.0%
CCGAAGATATCAAATCTGCA+AGG - chr3_3:5403277-5403296 None:intergenic 40.0%
AATTAGGACTGAGCATCAGA+CGG - chr3_3:5403317-5403336 None:intergenic 40.0%
CCATTGTATTCTCATGATGC+GGG + chr3_3:5403368-5403387 Msa0439370:intron 40.0%
CATTGTATTCTCATGATGCG+GGG + chr3_3:5403369-5403388 Msa0439370:intron 40.0%
TACTTCCTACTTCGCATCAT+GGG - chr3_3:5403402-5403421 None:intergenic 40.0%
GACATTCTGGTGAGAGAAAA+TGG - chr3_3:5403446-5403465 None:intergenic 40.0%
! GGTTACTAGTTGTCTAGTTC+AGG + chr3_3:5403521-5403540 Msa0439370:intron 40.0%
! TACTAGTTGTCTAGTTCAGG+TGG + chr3_3:5403524-5403543 Msa0439370:intron 40.0%
! CCTTTTCTCTTGCATGTTCA+TGG - chr3_3:5403554-5403573 None:intergenic 40.0%
CCATGAACATGCAAGAGAAA+AGG + chr3_3:5403551-5403570 Msa0439370:intron 40.0%
TGAACATGCAAGAGAAAAGG+AGG + chr3_3:5403554-5403573 Msa0439370:intron 40.0%
GAACATGCAAGAGAAAAGGA+GGG + chr3_3:5403555-5403574 Msa0439370:intron 40.0%
GAATGAGTCGATCGTACTTA+AGG - chr3_3:5403595-5403614 None:intergenic 40.0%
! ACGATCGACTCATTCCTTAT+TGG + chr3_3:5403600-5403619 Msa0439370:intron 40.0%
GAAACTGCTGAGAGAGAAAT+TGG + chr3_3:5404007-5404026 Msa0439370:intron 40.0%
TCAAACTTCTCCTGTTTGGT+AGG + chr3_3:5404037-5404056 Msa0439370:intron 40.0%
TATTTCTTGGCCTACCAAAC+AGG - chr3_3:5404050-5404069 None:intergenic 40.0%
GCGAAGAAAGATAAAAGTGG+TGG - chr3_3:5404102-5404121 None:intergenic 40.0%
AAATGAGGAAAGGGTGACAA+GGG - chr3_3:5404181-5404200 None:intergenic 40.0%
AAAATGAGGAAAGGGTGACA+AGG - chr3_3:5404182-5404201 None:intergenic 40.0%
!! TTCTGGAATGCACAAGTTGA+AGG - chr3_3:5405110-5405129 None:intergenic 40.0%
! GAGATTTGGAACAACCAACT+AGG - chr3_3:5405203-5405222 None:intergenic 40.0%
! GAGCACATGCATTTGAGATT+TGG - chr3_3:5405217-5405236 None:intergenic 40.0%
AGTGGTCTCTTTGCACAATA+TGG - chr3_3:5405239-5405258 None:intergenic 40.0%
! AGGCCTTGATAATCTCTTAG+AGG - chr3_3:5405413-5405432 None:intergenic 40.0%
CAATCTAGTCCCCTCATAAT+GGG - chr3_3:5405436-5405455 None:intergenic 40.0%
! CTATTGGTTGTCATGTCCTA+AGG + chr3_3:5405462-5405481 Msa0439370:intron 40.0%
GTCATGTCCTAAGGATTGTA+AGG + chr3_3:5405471-5405490 Msa0439370:intron 40.0%
GATGGAACCTTACAATCCTT+AGG - chr3_3:5405481-5405500 None:intergenic 40.0%
GAATTGAAACAGGGATGTGA+TGG + chr3_3:5405975-5405994 Msa0439370:intron 40.0%
! TCGATTTTGTTGAACGGTGT+TGG + chr3_3:5405999-5406018 Msa0439370:CDS 40.0%
TTGAATAGCCTCTTCCCTTA+AGG - chr3_3:5406060-5406079 None:intergenic 40.0%
TAATTCGTAGACAGTGTCCA+CGG + chr3_3:5406102-5406121 Msa0439370:CDS 40.0%
!! TGCCTCATTTTAAGGACACT+AGG + chr3_3:5406241-5406260 Msa0439370:intron 40.0%
CTCCTAGTGTCCTTAAAATG+AGG - chr3_3:5406246-5406265 None:intergenic 40.0%
GCATTTGTACACGAAACCTT+CGG + chr3_3:5406265-5406284 Msa0439370:intron 40.0%
CATTTGTACACGAAACCTTC+GGG + chr3_3:5406266-5406285 Msa0439370:intron 40.0%
TTGAAGAGACTAGTAGAGCT+CGG - chr3_3:5406395-5406414 None:intergenic 40.0%
! AGCTCTACTAGTCTCTTCAA+AGG + chr3_3:5406395-5406414 Msa0439370:intron 40.0%
!! ATCTTTCGTAGCACTGGTAT+TGG + chr3_3:5406575-5406594 Msa0439370:intron 40.0%
GAAGGAGTTGGAATAGTCAA+AGG + chr3_3:5406619-5406638 Msa0439370:intron 40.0%
CCAATGGTACATCAAAATCG+GGG - chr3_3:5406986-5407005 None:intergenic 40.0%
CCCAATGGTACATCAAAATC+GGG - chr3_3:5406987-5407006 None:intergenic 40.0%
!! CCCGATTTTGATGTACCATT+GGG + chr3_3:5406984-5407003 Msa0439370:CDS 40.0%
! AATGGTACTGGAAGATTGTC+TGG - chr3_3:5407044-5407063 None:intergenic 40.0%
TCCGTTCTTTCAAATGGTAC+TGG - chr3_3:5407056-5407075 None:intergenic 40.0%
!! TAGTCTTAGGATGACTTGCT+AGG - chr3_3:5407364-5407383 None:intergenic 40.0%
AGCAAGTCATCCTAAGACTA+AGG + chr3_3:5407364-5407383 Msa0439370:CDS 40.0%
TCACCAGGGTGTGTTTACAT+CGG + chr3_3:5400721-5400740 Msa0439370:CDS 45.0%
GGCAAGTCATCCTAAGACTA+AGG + chr3_3:5400754-5400773 Msa0439370:CDS 45.0%
! ATCTAAGGTGGCATCTATGG+TGG + chr3_3:5400919-5400938 Msa0439370:CDS 45.0%
GAAACAACGACATCCCAACT+AGG - chr3_3:5401022-5401041 None:intergenic 45.0%
!! TTTTAGGTAAGGCAGGAGTG+TGG - chr3_3:5401059-5401078 None:intergenic 45.0%
GTTAGAACCCTCCAAAGAGT+TGG + chr3_3:5401589-5401608 Msa0439370:intron 45.0%
CCAATCTCCAACTCTTTGGA+GGG - chr3_3:5401599-5401618 None:intergenic 45.0%
ACCAATCTCCAACTCTTTGG+AGG - chr3_3:5401600-5401619 None:intergenic 45.0%
ACAATGCTAGACTTGGCACA+AGG + chr3_3:5401902-5401921 Msa0439370:intron 45.0%
TCATAGCCTGCATTGCAAGT+AGG + chr3_3:5402505-5402524 Msa0439370:intron 45.0%
!!! ATACGGGTTTTTCGGGTTGT+AGG - chr3_3:5402554-5402573 None:intergenic 45.0%
TGCAAACGGGTAGGTTCAAT+CGG + chr3_3:5402583-5402602 Msa0439370:intron 45.0%
GTAGGTTCAATCGGGTTTGT+CGG + chr3_3:5402592-5402611 Msa0439370:intron 45.0%
AACTGTACCTTTCACCCGAT+GGG - chr3_3:5402618-5402637 None:intergenic 45.0%
! GTGAAAGGTACAGTTCTGTG+TGG + chr3_3:5402623-5402642 Msa0439370:intron 45.0%
GATGGTTTAGATGCACTCTC+TGG + chr3_3:5402752-5402771 Msa0439370:intron 45.0%
ATTAGGACTGAGCATCAGAC+GGG - chr3_3:5403316-5403335 None:intergenic 45.0%
CCCGCATCATGAGAATACAA+TGG - chr3_3:5403371-5403390 None:intergenic 45.0%
CTACTTCCTACTTCGCATCA+TGG - chr3_3:5403403-5403422 None:intergenic 45.0%
ATGCAAGAGAAAAGGAGGGT+GGG + chr3_3:5403559-5403578 Msa0439370:intron 45.0%
CAAGTGGGTGGAAAAGCTAT+TGG - chr3_3:5403652-5403671 None:intergenic 45.0%
CAGTAATGCAAACAAGTGGG+TGG - chr3_3:5403664-5403683 None:intergenic 45.0%
CACCCACTTGTTTGCATTAC+TGG + chr3_3:5403662-5403681 Msa0439370:intron 45.0%
! AGGGTGACAAGGGTATACAA+TGG - chr3_3:5404171-5404190 None:intergenic 45.0%
CTTCTCTCTCAGGGTATGTT+TGG - chr3_3:5404853-5404872 None:intergenic 45.0%
CAAACATACCCTGAGAGAGA+AGG + chr3_3:5404851-5404870 Msa0439370:intron 45.0%
AGATGGATATTGAGGGCTAG+TGG - chr3_3:5405257-5405276 None:intergenic 45.0%
TATCAAGGCCTCCCATTATG+AGG + chr3_3:5405422-5405441 Msa0439370:intron 45.0%
ATCAAGGCCTCCCATTATGA+GGG + chr3_3:5405423-5405442 Msa0439370:intron 45.0%
CCAATCTAGTCCCCTCATAA+TGG - chr3_3:5405437-5405456 None:intergenic 45.0%
CCATTATGAGGGGACTAGAT+TGG + chr3_3:5405434-5405453 Msa0439370:intron 45.0%
AAAAAGAGCCTGAGTATGCC+AGG - chr3_3:5405539-5405558 None:intergenic 45.0%
!! TTTCCATGACTGCTTTTCCC+AGG + chr3_3:5405556-5405575 Msa0439370:intron 45.0%
TTACCTGGGAAAAGCAGTCA+TGG - chr3_3:5405562-5405581 None:intergenic 45.0%
AATTCGTAGACAGTGTCCAC+GGG + chr3_3:5406103-5406122 Msa0439370:CDS 45.0%
!! CCCCGATTTTGATGTACCAT+TGG + chr3_3:5406983-5407002 Msa0439370:CDS 45.0%
GTGCAGTTGCATTGAAGGTT+AGG - chr3_3:5407022-5407041 None:intergenic 45.0%
GATCAGATGTAAACACACCC+TGG - chr3_3:5407337-5407356 None:intergenic 45.0%
!! TTTAAAAAAATAAAACTATT+CGG - chr3_3:5404399-5404418 None:intergenic 5.0%
!! TTATATTAAAAATATAAAGA+TGG + chr3_3:5405867-5405886 Msa0439370:intron 5.0%
ACACACCCTGGTGATTCAAG+AGG - chr3_3:5400715-5400734 None:intergenic 50.0%
GATCCGATGTAAACACACCC+TGG - chr3_3:5400727-5400746 None:intergenic 50.0%
! ATCTATGGTGGAAGAGGTGG+TGG + chr3_3:5400931-5400950 Msa0439370:intron 50.0%
CAACGACATCCCAACTAGGT+TGG - chr3_3:5401018-5401037 None:intergenic 50.0%
GAGTGTGGACAGACATCAAG+AGG - chr3_3:5401044-5401063 None:intergenic 50.0%
CCCTCCAAAGAGTTGGAGAT+TGG + chr3_3:5401596-5401615 Msa0439370:intron 50.0%
CATCGCGAGATAGAGCGATA+AGG - chr3_3:5402479-5402498 None:intergenic 50.0%
TATCGCTCTATCTCGCGATG+TGG + chr3_3:5402479-5402498 Msa0439370:intron 50.0%
ATCGCTCTATCTCGCGATGT+GGG + chr3_3:5402480-5402499 Msa0439370:intron 50.0%
CTCAGTCCTACTTGCAATGC+AGG - chr3_3:5402514-5402533 None:intergenic 50.0%
GCAAACGGGTAGGTTCAATC+GGG + chr3_3:5402584-5402603 Msa0439370:intron 50.0%
GAACTGTACCTTTCACCCGA+TGG - chr3_3:5402619-5402638 None:intergenic 50.0%
TCTAACGGTGCTTGTTCGGT+CGG - chr3_3:5402701-5402720 None:intergenic 50.0%
CATAGCCCATGATGCGAAGT+AGG + chr3_3:5403394-5403413 Msa0439370:intron 50.0%
! GTAGGAAGTAGCTGACTCCT+TGG + chr3_3:5403412-5403431 Msa0439370:intron 50.0%
CATGCAAGAGAAAAGGAGGG+TGG + chr3_3:5403558-5403577 Msa0439370:intron 50.0%
TGCGAAGAGATCCAGGAGAA+AGG + chr3_3:5404127-5404146 Msa0439370:intron 50.0%
GAGAACACAATGTCACCACG+AGG - chr3_3:5405066-5405085 None:intergenic 50.0%
TCAAGGCCTCCCATTATGAG+GGG + chr3_3:5405424-5405443 Msa0439370:intron 50.0%
! TCTAGTCCCCTCATAATGGG+AGG - chr3_3:5405433-5405452 None:intergenic 50.0%
! AAAGATAGTGGCCAAGCTCC+TGG + chr3_3:5405518-5405537 Msa0439370:intron 50.0%
ATCCTGCCAACTTCGCCTTA+AGG + chr3_3:5406042-5406061 Msa0439370:CDS 50.0%
TCCTGCCAACTTCGCCTTAA+GGG + chr3_3:5406043-5406062 Msa0439370:CDS 50.0%
CTCTTCCCTTAAGGCGAAGT+TGG - chr3_3:5406051-5406070 None:intergenic 50.0%
CAACTTCGCCTTAAGGGAAG+AGG + chr3_3:5406049-5406068 Msa0439370:CDS 50.0%
AGGCTGTCTCTTCTTCCCAA+TGG - chr3_3:5407002-5407021 None:intergenic 50.0%
GTCTGGTGCAGTTGCATTGA+AGG - chr3_3:5407027-5407046 None:intergenic 50.0%
!!! CTTTCTGAGGCGCACACTTT+TGG + chr3_3:5407131-5407150 Msa0439370:CDS 50.0%
! GGTGGCATCTATGGTGGAAG+AGG + chr3_3:5400925-5400944 Msa0439370:CDS 55.0%
! GGCATCTATGGTGGAAGAGG+TGG + chr3_3:5400928-5400947 Msa0439370:intron 55.0%
TCGCTCTATCTCGCGATGTG+GGG + chr3_3:5402481-5402500 Msa0439370:intron 55.0%
!! TTTCGGGTTGTAGGCGGGTT+CGG - chr3_3:5402545-5402564 None:intergenic 55.0%
!!! GGGTTTTTCGGGTTGTAGGC+GGG - chr3_3:5402550-5402569 None:intergenic 55.0%
!!! CGGGTTTTTCGGGTTGTAGG+CGG - chr3_3:5402551-5402570 None:intergenic 55.0%
AATCGGGTTTGTCGGCCCAT+CGG + chr3_3:5402600-5402619 Msa0439370:intron 55.0%
CTAACGGTGCTTGTTCGGTC+GGG - chr3_3:5402700-5402719 None:intergenic 55.0%
ACGATTTGAGCGGGCGGTTT+GGG - chr3_3:5403177-5403196 None:intergenic 55.0%
!! GCGTCGGATTAGTCGGATGA+CGG - chr3_3:5403212-5403231 None:intergenic 55.0%
!! GTGTGAGGCGTCGGATTAGT+CGG - chr3_3:5403219-5403238 None:intergenic 55.0%
GACTAATCCGACGCCTCACA+CGG + chr3_3:5403218-5403237 Msa0439370:intron 55.0%
! ACTGAGCATCAGACGGGTTC+GGG - chr3_3:5403310-5403329 None:intergenic 55.0%
! GACTGAGCATCAGACGGGTT+CGG - chr3_3:5403311-5403330 None:intergenic 55.0%
GCTGATGTGCGAAGAGATCC+AGG + chr3_3:5404120-5404139 Msa0439370:intron 55.0%
TGCACGTTATGGAAGCCTCG+TGG + chr3_3:5405048-5405067 Msa0439370:intron 55.0%
TCCCTTAAGGCGAAGTTGGC+AGG - chr3_3:5406047-5406066 None:intergenic 55.0%
! TCACGGGGTGCCAACCTAGT+TGG + chr3_3:5401005-5401024 Msa0439370:intron 60.0%
! CACGGGGTGCCAACCTAGTT+GGG + chr3_3:5401006-5401025 Msa0439370:intron 60.0%
ATCGGGTTTGTCGGCCCATC+GGG + chr3_3:5402601-5402620 Msa0439370:intron 60.0%
TTGTCGGCCCATCGGGTGAA+AGG + chr3_3:5402608-5402627 Msa0439370:intron 60.0%
GGTGCTTGTTCGGTCGGGTA+CGG - chr3_3:5402695-5402714 None:intergenic 60.0%
! TTTGAGCGGGCGGTTTGGGT+CGG - chr3_3:5403173-5403192 None:intergenic 60.0%
GACGATTTGAGCGGGCGGTT+TGG - chr3_3:5403178-5403197 None:intergenic 60.0%
! AGTCGGATGACGGTTTGCGC+CGG - chr3_3:5403202-5403221 None:intergenic 60.0%
AATCCGACGCCTCACACGGT+CGG + chr3_3:5403222-5403241 Msa0439370:intron 60.0%
CAACCATCTCCGACCGTGTG+AGG - chr3_3:5403234-5403253 None:intergenic 60.0%
GCCAAGCTCCTGGCATACTC+AGG + chr3_3:5405528-5405547 Msa0439370:intron 60.0%
GCCTGAGTATGCCAGGAGCT+TGG - chr3_3:5405532-5405551 None:intergenic 60.0%
! TCCACGGGTTGTCTCGTGTG+CGG + chr3_3:5406118-5406137 Msa0439370:intron 60.0%
TGCGGACATACTCGTCCTCG+CGG + chr3_3:5406136-5406155 Msa0439370:intron 60.0%
GGCACGAGAAGCTGTTCGTC+AGG + chr3_3:5406157-5406176 Msa0439370:intron 60.0%
! TGCGCCGGCGACGATTTGAG+CGG - chr3_3:5403187-5403206 None:intergenic 65.0%
TCTCCGACCGTGTGAGGCGT+CGG - chr3_3:5403228-5403247 None:intergenic 65.0%
ACGCCTCACACGGTCGGAGA+TGG + chr3_3:5403228-5403247 Msa0439370:intron 65.0%
! AGCATCAGACGGGTTCGGGC+GGG - chr3_3:5403306-5403325 None:intergenic 65.0%
! GAGCATCAGACGGGTTCGGG+CGG - chr3_3:5403307-5403326 None:intergenic 65.0%
TCCGCACACGAGACAACCCG+TGG - chr3_3:5406122-5406141 None:intergenic 65.0%
GAACAGCTTCTCGTGCCGCG+AGG - chr3_3:5406154-5406173 None:intergenic 65.0%
CCGGCGACGATTTGAGCGGG+CGG - chr3_3:5403183-5403202 None:intergenic 70.0%
CCGCCCGCTCAAATCGTCGC+CGG + chr3_3:5403180-5403199 Msa0439370:intron 70.0%
! GCGCCGGCGACGATTTGAGC+GGG - chr3_3:5403186-5403205 None:intergenic 70.0%
! CAGACGGGTTCGGGCGGGAT+CGG - chr3_3:5403301-5403320 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 5400698 5407415 5400698 ID=Msa0439370;Name=Msa0439370
chr3_3 mRNA 5400698 5407415 5400698 ID=Msa0439370-mRNA-1;Parent=Msa0439370;Name=Msa0439370-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|3|0|275
chr3_3 exon 5400698 5400946 5400698 ID=Msa0439370-mRNA-1:exon:1131;Parent=Msa0439370-mRNA-1
chr3_3 exon 5405987 5406124 5405987 ID=Msa0439370-mRNA-1:exon:1132;Parent=Msa0439370-mRNA-1
chr3_3 exon 5406975 5407415 5406975 ID=Msa0439370-mRNA-1:exon:1133;Parent=Msa0439370-mRNA-1
chr3_3 CDS 5400698 5400946 5400698 ID=Msa0439370-mRNA-1:cds;Parent=Msa0439370-mRNA-1
chr3_3 CDS 5405987 5406124 5405987 ID=Msa0439370-mRNA-1:cds;Parent=Msa0439370-mRNA-1
chr3_3 CDS 5406975 5407415 5406975 ID=Msa0439370-mRNA-1:cds;Parent=Msa0439370-mRNA-1
Gene Sequence

>Msa0439370

ATGTACTACATTAACCTCTTGAATCACCAGGGTGTGTTTACATCGGATCAAGACTTGGCAAGTCATCCTAAGACTAAGGAGATTGTGAACCTCTTTGCTTCTAACCAGAAAGAGTTTTTTAACAAATTTGCTAATGCTTTTGTTAAGGTTAGTCAATTGGATGTTTTGACTGGAAATCAAGGAGAAATTCGTAAGTCATGTTTTGCTCCAAATAATAGGAAATCTAAGGTGGCATCTATGGTGGAAGAGGGATGTGATGGATCGATTTTGTTGAACGGTGTTGGAGAAGATGACGAAAAACAACATCCTGCCAACTTCGCCTTAAGGGAAGAGGCTATTCAAACCCTTGAAAATCTCTGTGCTCTAATTCGTAGACAGTGTCCACGGCTTGGAGGCCCCGATTTTGATGTACCATTGGGAAGAAGAGACAGCCTAACCTTCAATGCAACTGCACCAGACAATCTTCCAGTACCATTTGAAAGAACGGATGAACAATTAAGACTTTTTCAATCCAGAAAATTTGATGCCACATATTTAGTTGCTCTTTCTGAGGCGCACACTTTTGGTCGATCCCATTGTCCTACACTATTCAATCGAACCATTGATACAAACCCACCAATAGACCCAAATTTCAAGAAACAACTCGAAGCGACATGTCCGAATGATCAATCACTGAACACAATTAACTTGGATATTAGAACACCAACGAAATTCGATAACATGTGCTATATTAATCTCTTGAATCACCAGGGTGTGTTTACATCTGATCAAGACCTAGCAAGTCATCCTAAGACTAAGGAGATTGTGAACCTCTTTGCTTCTAACTAG
Protein sequence

>Msa0439370

MYYINLLNHQGVFTSDQDLASHPKTKEIVNLFASNQKEFFNKFANAFVKVSQLDVLTGNQGEIRKSCFAPNNRKSKVASMVEEGCDGSILLNGVGEDDEKQHPANFALREEAIQTLENLCALIRRQCPRLGGPDFDVPLGRRDSLTFNATAPDNLPVPFERTDEQLRLFQSRKFDATYLVALSEAHTFGRSHCPTLFNRTIDTNPPIDPNFKKQLEATCPNDQSLNTINLDIRTPTKFDNMCYINLLNHQGVFTSDQDLASHPKTKEIVNLFASN*