Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426620 | XP_013450604.1 | 87.984 | 258 | 27 | 2 | 1 | 258 | 1 | 254 | 1.78e-154 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426620 | sp|O32107|YUID_BACSU | 48.322 | 149 | 62 | 2 | 111 | 246 | 3 | 149 | 4.55e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426620 | A0A072U4K7 | 87.984 | 258 | 27 | 2 | 1 | 258 | 1 | 254 | 8.52e-155 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa1426620 | 0.809349 | 1.976968e-50 | -8.615850e-47 |
| Msa0045660 | Msa1426620 | 0.808973 | 2.379707e-50 | -8.615850e-47 |
| Msa0096510 | Msa1426620 | 0.800616 | 1.326011e-48 | -8.615850e-47 |
| Msa1371840 | Msa1426620 | 0.812566 | 3.974876e-51 | -8.615850e-47 |
| Msa1426620 | Msa1431240 | 0.807651 | 4.554491e-50 | -8.615850e-47 |
| Msa1426620 | Msa1440980 | 0.800872 | 1.175197e-48 | -8.615850e-47 |
| Msa1426620 | Msa1460310 | -0.826807 | 2.215357e-54 | -8.615850e-47 |
| Msa0622690 | Msa1426620 | 0.802179 | 6.343786e-49 | -8.615850e-47 |
| Msa0623270 | Msa1426620 | 0.804817 | 1.800948e-49 | -8.615850e-47 |
| Msa1341440 | Msa1426620 | 0.913342 | 6.881072e-84 | -8.615850e-47 |
| Msa0264940 | Msa1426620 | -0.829098 | 6.224297e-55 | -8.615850e-47 |
| Msa0302990 | Msa1426620 | -0.826259 | 2.992919e-54 | -8.615850e-47 |
| Msa1130460 | Msa1426620 | 0.961119 | 2.472850e-119 | -8.615850e-47 |
| Msa1130480 | Msa1426620 | 0.947370 | 7.682056e-106 | -8.615850e-47 |
| Msa1191390 | Msa1426620 | 0.807587 | 4.698672e-50 | -8.615850e-47 |
| Msa0549740 | Msa1426620 | 0.808987 | 2.363511e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426620 | MtrunA17_Chr7g0275651 | 87.857 | 140 | 13 | 1 | 123 | 258 | 100 | 239 | 4.08e-82 | 246 |
| Msa1426620 | MtrunA17_Chr3g0122831 | 50.000 | 136 | 67 | 1 | 114 | 248 | 17 | 152 | 1.05e-40 | 137 |
| Msa1426620 | MtrunA17_Chr2g0322301 | 43.137 | 153 | 84 | 2 | 96 | 247 | 10 | 160 | 8.92e-38 | 130 |
| Msa1426620 | MtrunA17_Chr2g0309391 | 32.203 | 118 | 79 | 1 | 108 | 224 | 55 | 172 | 2.84e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426620 | AT3G61770.1 | 67.453 | 212 | 55 | 2 | 59 | 256 | 71 | 282 | 5.01e-100 | 293 |
| Msa1426620 | AT1G67600.1 | 50.365 | 137 | 67 | 1 | 113 | 248 | 17 | 153 | 6.76e-41 | 139 |
| Msa1426620 | AT1G24350.1 | 49.242 | 132 | 66 | 1 | 113 | 243 | 21 | 152 | 3.52e-39 | 134 |
| Msa1426620 | AT1G24350.5 | 48.800 | 125 | 63 | 1 | 113 | 236 | 21 | 145 | 4.06e-36 | 126 |
| Msa1426620 | AT1G24350.3 | 48.000 | 125 | 64 | 1 | 113 | 236 | 21 | 145 | 7.33e-36 | 126 |
| Msa1426620 | AT1G24350.2 | 48.000 | 125 | 64 | 1 | 113 | 236 | 21 | 145 | 7.89e-36 | 125 |
| Msa1426620 | AT1G24350.4 | 48.387 | 124 | 63 | 1 | 113 | 235 | 21 | 144 | 1.13e-35 | 124 |
| Msa1426620 | AT3G21610.1 | 47.761 | 134 | 68 | 2 | 115 | 247 | 35 | 167 | 1.01e-34 | 123 |
| Msa1426620 | AT3G21610.2 | 48.214 | 112 | 57 | 1 | 137 | 247 | 4 | 115 | 5.06e-30 | 109 |
| Msa1426620 | AT3G12685.1 | 33.962 | 159 | 85 | 3 | 108 | 246 | 47 | 205 | 1.89e-19 | 84.3 |
Find 74 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCAAAGAAACCATAAT+TGG | 0.165680 | tig0026054:-48528 | Msa1426620:CDS |
| TTGAGATTGTTCTGTGCTTC+TGG | 0.174739 | tig0026054:-48241 | Msa1426620:CDS |
| AAACCCAATTATGGTTTCTT+TGG | 0.186378 | tig0026054:+48524 | None:intergenic |
| TTTAGCTTTCTTTCACTAAT+TGG | 0.198388 | tig0026054:+44390 | None:intergenic |
| CAGCATGAGTATAATGTAAA+TGG | 0.284295 | tig0026054:-44132 | Msa1426620:three_prime_UTR |
| AAGGGAATGAAACCCAATTA+TGG | 0.289882 | tig0026054:+48515 | None:intergenic |
| ACTTAGGATTATTGATTGAT+AGG | 0.294726 | tig0026054:-44258 | Msa1426620:three_prime_UTR |
| CCTCCGGTAGTAAATATAAA+TGG | 0.306046 | tig0026054:-44098 | Msa1426620:three_prime_UTR |
| GGACAATGATGATGGAAGTT+TGG | 0.337325 | tig0026054:+48642 | None:intergenic |
| GATGGAAGTTTGGAAGTTAG+AGG | 0.347072 | tig0026054:+48652 | None:intergenic |
| TCTTTGGGAATTATCTGAAT+TGG | 0.350821 | tig0026054:+48540 | None:intergenic |
| AACCCAATTATGGTTTCTTT+GGG | 0.351443 | tig0026054:+48525 | None:intergenic |
| TGTTTGATTGTTTGCGCAAA+AGG | 0.358717 | tig0026054:+48496 | None:intergenic |
| CTTAGGATTATTGATTGATA+GGG | 0.375389 | tig0026054:-44257 | Msa1426620:three_prime_UTR |
| TTGAGAACAAGAAGTGGAAA+TGG | 0.382093 | tig0026054:+48591 | None:intergenic |
| TACTTGCAAAACGGAGGTTT+GGG | 0.382574 | tig0026054:-48424 | Msa1426620:CDS |
| TTACTTGCAAAACGGAGGTT+TGG | 0.395141 | tig0026054:-48425 | Msa1426620:CDS |
| ATTGTTATGTATGATGCTAT+TGG | 0.409979 | tig0026054:-48109 | Msa1426620:CDS |
| GTGTTTGCTGGTGCCCTGCT+TGG | 0.410993 | tig0026054:-44339 | Msa1426620:CDS |
| GGTAATATAATGCAACCTTC+TGG | 0.413830 | tig0026054:-44219 | Msa1426620:three_prime_UTR |
| ACCCCATCTCAAGTGTTTGC+TGG | 0.426034 | tig0026054:-44351 | Msa1426620:CDS |
| AGGTTGTGTTGTGGTGGGTT+AGG | 0.437936 | tig0026054:-44289 | Msa1426620:exon |
| TTCCCAAAGAAACCATAATT+GGG | 0.445716 | tig0026054:-48527 | Msa1426620:CDS |
| GGGTTAGGTCGTTAGGACTT+AGG | 0.447284 | tig0026054:-44274 | Msa1426620:exon |
| ATTCTATTCTAGCTAACTCA+TGG | 0.456192 | tig0026054:-48689 | Msa1426620:exon |
| AGAAAGCTAAAGGAACTTCT+TGG | 0.460632 | tig0026054:-44378 | Msa1426620:CDS |
| ACAGGTGCTTAACATGATTC+TGG | 0.467232 | tig0026054:-44433 | Msa1426620:intron |
| TTGTGGTGGGTTAGGTCGTT+AGG | 0.469090 | tig0026054:-44281 | Msa1426620:exon |
| ATTCTGGCTGACATGTTTCA+AGG | 0.469695 | tig0026054:-44417 | Msa1426620:CDS |
| AGACTAAACCCCAAAGAAAC+CGG | 0.472907 | tig0026054:+48133 | None:intergenic |
| ATTTCTTTGTAGAAAGAAAG+TGG | 0.473240 | tig0026054:-48267 | Msa1426620:CDS |
| ACAACCTTGGCAGCAGAAAC+AGG | 0.473702 | tig0026054:+44305 | None:intergenic |
| TGTGCTTGAATGATGAATAC+AGG | 0.475864 | tig0026054:+44168 | None:intergenic |
| GTAGCCTGTTTCTGCTGCCA+AGG | 0.476759 | tig0026054:-44309 | Msa1426620:CDS |
| GAAGTTTGGAAGTTAGAGGA+AGG | 0.482388 | tig0026054:+48656 | None:intergenic |
| AACAACCCAGAAACAAAAGT+TGG | 0.487269 | tig0026054:+48328 | None:intergenic |
| TGAGAACAAGAAGTGGAAAT+GGG | 0.496852 | tig0026054:+48592 | None:intergenic |
| GAAGCCAATGTAGCCACAAA+AGG | 0.498839 | tig0026054:+48355 | None:intergenic |
| GTTTGATTGTTTGCGCAAAA+GGG | 0.499743 | tig0026054:+48497 | None:intergenic |
| TTTCTTTGTAGAAAGAAAGT+GGG | 0.502712 | tig0026054:-48266 | Msa1426620:CDS |
| ATAGGGGATACTATTTGCTC+TGG | 0.503787 | tig0026054:-44240 | Msa1426620:three_prime_UTR |
| CTGCCAAGGTTGTGTTGTGG+TGG | 0.507895 | tig0026054:-44295 | Msa1426620:CDS |
| ACATGCTGGCATGCAAGCTC+AGG | 0.509605 | tig0026054:-48077 | Msa1426620:intron |
| ACTTCAGTTGCTCTCTGTCA+TGG | 0.510430 | tig0026054:-48175 | Msa1426620:CDS |
| CATAGCGCAGAATGAGAAGA+AGG | 0.513464 | tig0026054:+48211 | None:intergenic |
| GCACCAGCAAACACTTGAGA+TGG | 0.518672 | tig0026054:+44348 | None:intergenic |
| AATTAGTGAAAGAAAGCTAA+AGG | 0.524355 | tig0026054:-44388 | Msa1426620:CDS |
| TTAGGATTATTGATTGATAG+GGG | 0.524996 | tig0026054:-44256 | Msa1426620:three_prime_UTR |
| GGACCATTTATATTTACTAC+CGG | 0.527603 | tig0026054:+44095 | None:intergenic |
| ACAACCCAGAAACAAAAGTT+GGG | 0.531405 | tig0026054:+48329 | None:intergenic |
| TGGGTTGTTTGCGTGGTTTG+TGG | 0.534535 | tig0026054:-48314 | Msa1426620:CDS |
| GATTGTTCTGTGCTTCTGGA+GGG | 0.541900 | tig0026054:-48237 | Msa1426620:CDS |
| AGATTGTTCTGTGCTTCTGG+AGG | 0.542518 | tig0026054:-48238 | Msa1426620:CDS |
| AAGTGTTGTTACTTGCAAAA+CGG | 0.543044 | tig0026054:-48433 | Msa1426620:CDS |
| TGCCAAGGTTGTGTTGTGGT+GGG | 0.550908 | tig0026054:-44294 | Msa1426620:CDS |
| CACCAGCAAACACTTGAGAT+GGG | 0.556379 | tig0026054:+44349 | None:intergenic |
| TTGTTTCTGGGTTGTTTGCG+TGG | 0.569800 | tig0026054:-48321 | Msa1426620:CDS |
| GCAAAACGGAGGTTTGGGAA+TGG | 0.571722 | tig0026054:-48419 | Msa1426620:CDS |
| AAGTGAAAGGACAATGATGA+TGG | 0.573349 | tig0026054:+48634 | None:intergenic |
| ATAAGATTGAGAACAAGAAG+TGG | 0.576173 | tig0026054:+48585 | None:intergenic |
| CTGCTGCCAAGGTTGTGTTG+TGG | 0.588915 | tig0026054:-44298 | Msa1426620:CDS |
| AACCCACCACAACACAACCT+TGG | 0.598748 | tig0026054:+44292 | None:intergenic |
| AAGAAGTGGAAATGGGTCTG+AGG | 0.599234 | tig0026054:+48599 | None:intergenic |
| AGAAGTGGAAATGGGTCTGA+GGG | 0.601799 | tig0026054:+48600 | None:intergenic |
| TTCTGGCTGACATGTTTCAA+GGG | 0.603699 | tig0026054:-44416 | Msa1426620:CDS |
| ATGCGTAACGACGAATGCAA+AGG | 0.606693 | tig0026054:-48389 | Msa1426620:CDS |
| ATTGGTGTTAGAAGACATGC+TGG | 0.633014 | tig0026054:-48091 | Msa1426620:CDS |
| TGTTGTTACTTGCAAAACGG+AGG | 0.648402 | tig0026054:-48430 | Msa1426620:CDS |
| CCATTTATATTTACTACCGG+AGG | 0.653925 | tig0026054:+44098 | None:intergenic |
| GGTACGTTTCATATACCAGA+AGG | 0.659441 | tig0026054:+44204 | None:intergenic |
| GGTGTTGAAGTGAAAGTGAA+AGG | 0.663065 | tig0026054:+48621 | None:intergenic |
| GTGCTTGAATGATGAATACA+GGG | 0.665212 | tig0026054:+44169 | None:intergenic |
| ACCAGCAAACACTTGAGATG+GGG | 0.665470 | tig0026054:+44350 | None:intergenic |
| AATACAGGGCACTAACTATG+CGG | 0.735031 | tig0026054:+44183 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTAATAAATAATTCAA+GGG | + | tig0026054:46712-46731 | None:intergenic | 10.0% |
| !! | TATTTGTAATAAATAATTCA+AGG | + | tig0026054:46713-46732 | None:intergenic | 10.0% |
| !!! | AATTTTTCTTTATAAACAAA+AGG | + | tig0026054:48369-48388 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGGATATAAGA+GGG | + | tig0026054:44127-44146 | None:intergenic | 15.0% |
| !!! | AGAATAGAATGTTTTTTTTT+TGG | + | tig0026054:44138-44157 | None:intergenic | 15.0% |
| !! | TACTAATAATCAAATATGAA+AGG | + | tig0026054:44819-44838 | None:intergenic | 15.0% |
| !! | ACTGAAGATTTATATATATA+AGG | - | tig0026054:46243-46262 | Msa1426620:intron | 15.0% |
| !! | TTTGTAATAAATAATTCAAG+GGG | + | tig0026054:46711-46730 | None:intergenic | 15.0% |
| !!! | TATGAATTTTTTTGTTTTAG+AGG | - | tig0026054:47159-47178 | Msa1426620:intron | 15.0% |
| !! | TTAAAAAAAATGTATATGCT+TGG | - | tig0026054:47365-47384 | Msa1426620:intron | 15.0% |
| !! | ATAATTTACAGAAATGATAT+AGG | - | tig0026054:47409-47428 | Msa1426620:intron | 15.0% |
| !! | TAATTTACAGAAATGATATA+GGG | - | tig0026054:47410-47429 | Msa1426620:intron | 15.0% |
| !!! | GTTTTTTTTTTGGATATAAG+AGG | + | tig0026054:44128-44147 | None:intergenic | 20.0% |
| !! | TAAAAACAACTTATGAGTTA+TGG | + | tig0026054:45093-45112 | None:intergenic | 20.0% |
| !!! | CAAAATAATTTGTGTAAACT+CGG | - | tig0026054:45414-45433 | Msa1426620:intron | 20.0% |
| !!! | AAAATAATTTGTGTAAACTC+GGG | - | tig0026054:45415-45434 | Msa1426620:intron | 20.0% |
| !!! | CATTTTAAGTTTTGTTATTG+TGG | - | tig0026054:45955-45974 | Msa1426620:intron | 20.0% |
| !! | TTTGTTGCAACTTAAATAAT+TGG | + | tig0026054:46186-46205 | None:intergenic | 20.0% |
| !! | AAGTTAAACAAAAATGAACT+GGG | - | tig0026054:46537-46556 | Msa1426620:intron | 20.0% |
| !! | TTGTACTATTTAAAAACCAA+AGG | + | tig0026054:46568-46587 | None:intergenic | 20.0% |
| !! | AATGTTCAAAATACTGAATA+TGG | + | tig0026054:46675-46694 | None:intergenic | 20.0% |
| !!! | TATTCAGTATTTTGAACATT+AGG | - | tig0026054:46675-46694 | Msa1426620:intron | 20.0% |
| !! | TTGTAATAAATAATTCAAGG+GGG | + | tig0026054:46710-46729 | None:intergenic | 20.0% |
| !! | ATTTATTACAAATAAACCAG+TGG | - | tig0026054:46719-46738 | Msa1426620:intron | 20.0% |
| !! | TTTCTAACAGTCTAAATATT+GGG | + | tig0026054:47195-47214 | None:intergenic | 20.0% |
| !!! | GGTATTATTTTTCCTTAAAT+TGG | - | tig0026054:47325-47344 | Msa1426620:intron | 20.0% |
| !!! | CATTTTTTTTAAATGACATC+CGG | + | tig0026054:47357-47376 | None:intergenic | 20.0% |
| !! | TTTATGATAGAACATTATGA+CGG | - | tig0026054:47694-47713 | Msa1426620:intron | 20.0% |
| ! | ATTTCTTTGTAGAAAGAAAG+TGG | - | tig0026054:44585-44604 | Msa1426620:intron | 25.0% |
| ! | TTTCTTTGTAGAAAGAAAGT+GGG | - | tig0026054:44586-44605 | Msa1426620:intron | 25.0% |
| ! | ATTGTTATGTATGATGCTAT+TGG | - | tig0026054:44743-44762 | Msa1426620:intron | 25.0% |
| !! | ATTTCATAAGTTCTCTAAGA+TGG | + | tig0026054:45044-45063 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAGATTGTTT+GGG | + | tig0026054:45124-45143 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAGATTGTT+TGG | + | tig0026054:45125-45144 | None:intergenic | 25.0% |
| ! | CTAACTCAAAGAATATTAAG+AGG | - | tig0026054:45353-45372 | Msa1426620:intron | 25.0% |
| ! | TCAAAGAATATTAAGAGGTT+AGG | - | tig0026054:45358-45377 | Msa1426620:intron | 25.0% |
| ! | TTGCAAGAATTTGCAATAAT+AGG | + | tig0026054:45695-45714 | None:intergenic | 25.0% |
| ! | ATTATAGAATAAAGGACGAA+GGG | + | tig0026054:45805-45824 | None:intergenic | 25.0% |
| ! | TATTATAGAATAAAGGACGA+AGG | + | tig0026054:45806-45825 | None:intergenic | 25.0% |
| ! | AATAGCAGGTTAAAAATCAA+TGG | + | tig0026054:45858-45877 | None:intergenic | 25.0% |
| ! | GTAACATAATCTCTTTAGTT+TGG | - | tig0026054:46135-46154 | Msa1426620:intron | 25.0% |
| ! | TTGAATTAGGTTTGAATCTT+TGG | - | tig0026054:46334-46353 | Msa1426620:intron | 25.0% |
| ! | TTATATCTCAATTTGAGAAC+TGG | - | tig0026054:46383-46402 | Msa1426620:intron | 25.0% |
| ! | CTTACTAATGTCCAAAAATA+TGG | + | tig0026054:46428-46447 | None:intergenic | 25.0% |
| ! | TTAGTAAGATATTTCCCATA+AGG | - | tig0026054:46440-46459 | Msa1426620:intron | 25.0% |
| ! | GAAGTTAAACAAAAATGAAC+TGG | - | tig0026054:46536-46555 | Msa1426620:intron | 25.0% |
| !!! | ATATGGTTGGTAAATTTCTT+AGG | + | tig0026054:46658-46677 | None:intergenic | 25.0% |
| ! | TTCAAAATACTGAATATGGT+TGG | + | tig0026054:46671-46690 | None:intergenic | 25.0% |
| ! | AAATAAACCAGTGGAAAAAA+GGG | - | tig0026054:46728-46747 | Msa1426620:intron | 25.0% |
| ! | CAAACAATCTCATCATAATT+GGG | + | tig0026054:46787-46806 | None:intergenic | 25.0% |
| ! | GTAAAATTTAGTCACAAACA+GGG | + | tig0026054:46886-46905 | None:intergenic | 25.0% |
| !!! | ATGAGGTTTTAGATATAACA+TGG | + | tig0026054:47012-47031 | None:intergenic | 25.0% |
| ! | CAACATCCACAAAAAATAAA+GGG | + | tig0026054:47054-47073 | None:intergenic | 25.0% |
| ! | TCAACATCCACAAAAAATAA+AGG | + | tig0026054:47055-47074 | None:intergenic | 25.0% |
| ! | GTTTCTAACAGTCTAAATAT+TGG | + | tig0026054:47196-47215 | None:intergenic | 25.0% |
| ! | AATGAAGAAACATAGTTCAA+GGG | + | tig0026054:47224-47243 | None:intergenic | 25.0% |
| ! | AACTATGTTTCTTCATTGAT+AGG | - | tig0026054:47227-47246 | Msa1426620:intron | 25.0% |
| ! | AAAAAAATGTATATGCTTGG+TGG | - | tig0026054:47368-47387 | Msa1426620:intron | 25.0% |
| ! | TTTCAAACTAACAAAAGACT+GGG | + | tig0026054:47511-47530 | None:intergenic | 25.0% |
| ! | AGAAATACATAAAATGCAGA+TGG | + | tig0026054:47549-47568 | None:intergenic | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | + | tig0026054:47967-47986 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | + | tig0026054:47971-47990 | None:intergenic | 25.0% |
| !! | GTTATTGTTGTATTTCTGTA+GGG | - | tig0026054:48157-48176 | Msa1426620:CDS | 25.0% |
| !! | TGTTGTTGTTGTATTTATGT+AGG | - | tig0026054:48263-48282 | Msa1426620:CDS | 25.0% |
| !! | GTTGTTGTTGTATTTATGTA+GGG | - | tig0026054:48264-48283 | Msa1426620:CDS | 25.0% |
| !!! | TTTAGCTTTCTTTCACTAAT+TGG | + | tig0026054:48465-48484 | None:intergenic | 25.0% |
| ! | AATTAGTGAAAGAAAGCTAA+AGG | - | tig0026054:48464-48483 | Msa1426620:CDS | 25.0% |
| !! | ACTTAGGATTATTGATTGAT+AGG | - | tig0026054:48594-48613 | Msa1426620:CDS | 25.0% |
| !! | CTTAGGATTATTGATTGATA+GGG | - | tig0026054:48595-48614 | Msa1426620:CDS | 25.0% |
| !! | TTAGGATTATTGATTGATAG+GGG | - | tig0026054:48596-48615 | Msa1426620:CDS | 25.0% |
| ! | ATTCTATTCTAGCTAACTCA+TGG | - | tig0026054:44163-44182 | Msa1426620:three_prime_UTR | 30.0% |
| ATAAGATTGAGAACAAGAAG+TGG | + | tig0026054:44270-44289 | None:intergenic | 30.0% | |
| ! | TCTTTGGGAATTATCTGAAT+TGG | + | tig0026054:44315-44334 | None:intergenic | 30.0% |
| ATTCCCAAAGAAACCATAAT+TGG | - | tig0026054:44324-44343 | Msa1426620:CDS | 30.0% | |
| TTCCCAAAGAAACCATAATT+GGG | - | tig0026054:44325-44344 | Msa1426620:CDS | 30.0% | |
| AACCCAATTATGGTTTCTTT+GGG | + | tig0026054:44330-44349 | None:intergenic | 30.0% | |
| AAACCCAATTATGGTTTCTT+TGG | + | tig0026054:44331-44350 | None:intergenic | 30.0% | |
| ! | TTCATCGGAAACTTTCTTTT+TGG | + | tig0026054:44399-44418 | None:intergenic | 30.0% |
| ! | CAAGTAACAACACTTTTCAT+CGG | + | tig0026054:44414-44433 | None:intergenic | 30.0% |
| ! | AAGTGTTGTTACTTGCAAAA+CGG | - | tig0026054:44419-44438 | Msa1426620:CDS | 30.0% |
| TATTTGAGCTGCTTATTTAC+TGG | + | tig0026054:45149-45168 | None:intergenic | 30.0% | |
| !! | TGAATCTAGCTCTAATGAAA+AGG | - | tig0026054:45772-45791 | Msa1426620:intron | 30.0% |
| !! | TGTGCACTACTTTTGAATTA+TGG | - | tig0026054:45922-45941 | Msa1426620:intron | 30.0% |
| ! | AATTTTCACATGACTAGAGT+AGG | - | tig0026054:46266-46285 | Msa1426620:intron | 30.0% |
| TATACTCAGCATTCATTTAG+TGG | - | tig0026054:46291-46310 | Msa1426620:intron | 30.0% | |
| TGGCAAATAATGAATTAGCT+AGG | - | tig0026054:46311-46330 | Msa1426620:intron | 30.0% | |
| ! | TGAATTAGCTAGGTTGAATT+AGG | - | tig0026054:46321-46340 | Msa1426620:intron | 30.0% |
| ! | GAATTCACCAACCATATTTT+TGG | - | tig0026054:46414-46433 | Msa1426620:intron | 30.0% |
| CTAATGTCCAAAAATATGGT+TGG | + | tig0026054:46424-46443 | None:intergenic | 30.0% | |
| CAAATAAACCAGTGGAAAAA+AGG | - | tig0026054:46727-46746 | Msa1426620:intron | 30.0% | |
| ! | CAGTATACAGTTTTGCAATT+TGG | - | tig0026054:46758-46777 | Msa1426620:intron | 30.0% |
| GCAAACAATCTCATCATAAT+TGG | + | tig0026054:46788-46807 | None:intergenic | 30.0% | |
| TGAACCATATAGCTAAGTTA+TGG | - | tig0026054:46831-46850 | Msa1426620:intron | 30.0% | |
| CTTTCCATAACTTAGCTATA+TGG | + | tig0026054:46838-46857 | None:intergenic | 30.0% | |
| CGTAAAATTTAGTCACAAAC+AGG | + | tig0026054:46887-46906 | None:intergenic | 30.0% | |
| TTACGCGTTCATATAATCAT+TGG | - | tig0026054:46902-46921 | Msa1426620:intron | 30.0% | |
| TACGCGTTCATATAATCATT+GGG | - | tig0026054:46903-46922 | Msa1426620:intron | 30.0% | |
| TTAGATATAACATGGAGATG+AGG | + | tig0026054:47004-47023 | None:intergenic | 30.0% | |
| !! | TTTGTTGATTTGCGAATACT+TGG | - | tig0026054:47116-47135 | Msa1426620:intron | 30.0% |
| ATGAAGAAACATAGTTCAAG+GGG | + | tig0026054:47223-47242 | None:intergenic | 30.0% | |
| CAATGAAGAAACATAGTTCA+AGG | + | tig0026054:47225-47244 | None:intergenic | 30.0% | |
| TTCCTTAAATTGGAAAGAAC+CGG | - | tig0026054:47335-47354 | Msa1426620:intron | 30.0% | |
| GTTTCAAACTAACAAAAGAC+TGG | + | tig0026054:47512-47531 | None:intergenic | 30.0% | |
| TTGTACAGAAATGATCACTT+GGG | - | tig0026054:47610-47629 | Msa1426620:intron | 30.0% | |
| CAAAAAACATTAGAGTAAGC+TGG | + | tig0026054:47646-47665 | None:intergenic | 30.0% | |
| ! | GTTAGTATTTCTGTAGTGTT+AGG | - | tig0026054:47665-47684 | Msa1426620:intron | 30.0% |
| ATTTCTGTAGTGTTAGGATA+TGG | - | tig0026054:47671-47690 | Msa1426620:intron | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | + | tig0026054:47968-47987 | None:intergenic | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | + | tig0026054:47974-47993 | None:intergenic | 30.0% | |
| ATACTAAACTCTCCTCATTT+GGG | + | tig0026054:47995-48014 | None:intergenic | 30.0% | |
| AATACTAAACTCTCCTCATT+TGG | + | tig0026054:47996-48015 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+GGG | + | tig0026054:48053-48072 | None:intergenic | 30.0% | |
| ! | GGTTATTGTTGTATTTCTGT+AGG | - | tig0026054:48156-48175 | Msa1426620:CDS | 30.0% |
| TGTTGTATTTATGTAGGGTT+AGG | - | tig0026054:48269-48288 | Msa1426620:CDS | 30.0% | |
| GTTGTATTTATGTAGGGTTA+GGG | - | tig0026054:48270-48289 | Msa1426620:CDS | 30.0% | |
| TTGTATTTATGTAGGGTTAG+GGG | - | tig0026054:48271-48290 | Msa1426620:CDS | 30.0% | |
| !!! | AGATCTATTGTCATTTTGTC+TGG | - | tig0026054:48322-48341 | Msa1426620:CDS | 30.0% |
| CAGCATGAGTATAATGTAAA+TGG | - | tig0026054:48720-48739 | Msa1426620:five_prime_UTR | 30.0% | |
| !!! | AATGGAGATTTTTTTTCCTC+CGG | - | tig0026054:48738-48757 | Msa1426620:five_prime_UTR | 30.0% |
| GGACCATTTATATTTACTAC+CGG | + | tig0026054:48760-48779 | None:intergenic | 30.0% | |
| AAGTGAAAGGACAATGATGA+TGG | + | tig0026054:44221-44240 | None:intergenic | 35.0% | |
| TGAGAACAAGAAGTGGAAAT+GGG | + | tig0026054:44263-44282 | None:intergenic | 35.0% | |
| TTGAGAACAAGAAGTGGAAA+TGG | + | tig0026054:44264-44283 | None:intergenic | 35.0% | |
| AAGGGAATGAAACCCAATTA+TGG | + | tig0026054:44340-44359 | None:intergenic | 35.0% | |
| GTTTGATTGTTTGCGCAAAA+GGG | + | tig0026054:44358-44377 | None:intergenic | 35.0% | |
| TGTTTGATTGTTTGCGCAAA+AGG | + | tig0026054:44359-44378 | None:intergenic | 35.0% | |
| !! | TCAAACCCAACTTTTGTTTC+TGG | - | tig0026054:44518-44537 | Msa1426620:intron | 35.0% |
| !! | CAAACCCAACTTTTGTTTCT+GGG | - | tig0026054:44519-44538 | Msa1426620:intron | 35.0% |
| ACAACCCAGAAACAAAAGTT+GGG | + | tig0026054:44526-44545 | None:intergenic | 35.0% | |
| AACAACCCAGAAACAAAAGT+TGG | + | tig0026054:44527-44546 | None:intergenic | 35.0% | |
| !!! | TGTTGCTGATTCTCTTTTTC+CGG | - | tig0026054:44700-44719 | Msa1426620:intron | 35.0% |
| ! | TTCTCTTTTTCCGGTTTCTT+TGG | - | tig0026054:44709-44728 | Msa1426620:intron | 35.0% |
| ! | TCTCTTTTTCCGGTTTCTTT+GGG | - | tig0026054:44710-44729 | Msa1426620:intron | 35.0% |
| ! | ATCCAATTTTACATCCTCTC+CGG | + | tig0026054:45203-45222 | None:intergenic | 35.0% |
| TGACAAAATCTGCATAGCTA+TGG | - | tig0026054:45314-45333 | Msa1426620:intron | 35.0% | |
| TATTAAGAGGTTAGGACTCT+AGG | - | tig0026054:45366-45385 | Msa1426620:intron | 35.0% | |
| CACATAGAATTGTGAGTTTG+AGG | - | tig0026054:45456-45475 | Msa1426620:intron | 35.0% | |
| CCATTCAACTGTTGCATATT+GGG | + | tig0026054:45514-45533 | None:intergenic | 35.0% | |
| ACCATTCAACTGTTGCATAT+TGG | + | tig0026054:45515-45534 | None:intergenic | 35.0% | |
| TAGTGCACAAAACATTAACC+TGG | - | tig0026054:45555-45574 | Msa1426620:intron | 35.0% | |
| AGTACAACATGGTTCACATT+TGG | + | tig0026054:45618-45637 | None:intergenic | 35.0% | |
| GTTAGATTCATTCACCTTGT+TGG | + | tig0026054:45731-45750 | None:intergenic | 35.0% | |
| AGCATAAGAAAGAGAATAGC+AGG | + | tig0026054:45872-45891 | None:intergenic | 35.0% | |
| CTCTTTCTTATGCTTAGTTG+TGG | - | tig0026054:45878-45897 | Msa1426620:intron | 35.0% | |
| AGTTATATCACTTAGAAGCC+AGG | + | tig0026054:46217-46236 | None:intergenic | 35.0% | |
| ! | AATTTGAGAACTGGTTCCTA+GGG | - | tig0026054:46392-46411 | Msa1426620:intron | 35.0% |
| TCACATACTCAGCATTCATT+TGG | - | tig0026054:46511-46530 | Msa1426620:intron | 35.0% | |
| ! | TGATGAAAGCTTCTGACTTT+TGG | + | tig0026054:46591-46610 | None:intergenic | 35.0% |
| ! | TCATTTTCCCTTTTTTCCAC+TGG | + | tig0026054:46738-46757 | None:intergenic | 35.0% |
| ATAGCTAAGTTATGGAAAGC+TGG | - | tig0026054:46839-46858 | Msa1426620:intron | 35.0% | |
| ATTGGGAGTCAAAATGATGA+TGG | - | tig0026054:46920-46939 | Msa1426620:intron | 35.0% | |
| ! | CTGAAGGAAGCTAAACATTT+TGG | - | tig0026054:46965-46984 | Msa1426620:intron | 35.0% |
| AAAAAATAAAGGGACCTCCA+AGG | + | tig0026054:47044-47063 | None:intergenic | 35.0% | |
| TGAAGAAACATAGTTCAAGG+GGG | + | tig0026054:47222-47241 | None:intergenic | 35.0% | |
| GTATAATGACAGTAAGATCG+AGG | - | tig0026054:47304-47323 | Msa1426620:intron | 35.0% | |
| ATCCGGTTCTTTCCAATTTA+AGG | + | tig0026054:47340-47359 | None:intergenic | 35.0% | |
| CTAGTCCACATATAGACATT+AGG | + | tig0026054:47454-47473 | None:intergenic | 35.0% | |
| GTGCTCCTAAATTATCAGTT+AGG | - | tig0026054:47473-47492 | Msa1426620:intron | 35.0% | |
| TCACGCCTAACTGATAATTT+AGG | + | tig0026054:47481-47500 | None:intergenic | 35.0% | |
| ATTTCAAGCATCTCTTGCTA+AGG | - | tig0026054:47587-47606 | Msa1426620:intron | 35.0% | |
| GTTGTACAGAAATGATCACT+TGG | - | tig0026054:47609-47628 | Msa1426620:intron | 35.0% | |
| GTGGAAAATATGAGGGAAAA+TGG | - | tig0026054:47794-47813 | Msa1426620:intron | 35.0% | |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | - | tig0026054:47980-47999 | Msa1426620:intron | 35.0% |
| TACTAAACTCTCCTCATTTG+GGG | + | tig0026054:47994-48013 | None:intergenic | 35.0% | |
| AGAAATAGAGGAAAATGGGA+GGG | + | tig0026054:48049-48068 | None:intergenic | 35.0% | |
| AAGAAATAGAGGAAAATGGG+AGG | + | tig0026054:48050-48069 | None:intergenic | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | + | tig0026054:48054-48073 | None:intergenic | 35.0% | |
| GGATCTCTAATGCAAATGAT+GGG | - | tig0026054:48292-48311 | Msa1426620:CDS | 35.0% | |
| TGACCAGAAAATTGTGTGTA+TGG | - | tig0026054:48390-48409 | Msa1426620:CDS | 35.0% | |
| AGAAAGCTAAAGGAACTTCT+TGG | - | tig0026054:48474-48493 | Msa1426620:CDS | 35.0% | |
| GGTAATATAATGCAACCTTC+TGG | - | tig0026054:48633-48652 | Msa1426620:CDS | 35.0% | |
| GTGCTTGAATGATGAATACA+GGG | + | tig0026054:48686-48705 | None:intergenic | 35.0% | |
| TGTGCTTGAATGATGAATAC+AGG | + | tig0026054:48687-48706 | None:intergenic | 35.0% | |
| CCATTTATATTTACTACCGG+AGG | + | tig0026054:48757-48776 | None:intergenic | 35.0% | |
| CCTCCGGTAGTAAATATAAA+TGG | - | tig0026054:48754-48773 | Msa1426620:five_prime_UTR | 35.0% | |
| GAAGTTTGGAAGTTAGAGGA+AGG | + | tig0026054:44199-44218 | None:intergenic | 40.0% | |
| GATGGAAGTTTGGAAGTTAG+AGG | + | tig0026054:44203-44222 | None:intergenic | 40.0% | |
| !! | GGACAATGATGATGGAAGTT+TGG | + | tig0026054:44213-44232 | None:intergenic | 40.0% |
| ! | GGTGTTGAAGTGAAAGTGAA+AGG | + | tig0026054:44234-44253 | None:intergenic | 40.0% |
| ! | TGTTGTTACTTGCAAAACGG+AGG | - | tig0026054:44422-44441 | Msa1426620:CDS | 40.0% |
| TTACTTGCAAAACGGAGGTT+TGG | - | tig0026054:44427-44446 | Msa1426620:CDS | 40.0% | |
| TACTTGCAAAACGGAGGTTT+GGG | - | tig0026054:44428-44447 | Msa1426620:CDS | 40.0% | |
| !! | GGTCAAGATTAGTCCTTTTG+TGG | - | tig0026054:44484-44503 | Msa1426620:intron | 40.0% |
| ! | TAGTCCTTTTGTGGCTACAT+TGG | - | tig0026054:44493-44512 | Msa1426620:intron | 40.0% |
| TTGAGATTGTTCTGTGCTTC+TGG | - | tig0026054:44611-44630 | Msa1426620:intron | 40.0% | |
| ! | CTCTTTTTCCGGTTTCTTTG+GGG | - | tig0026054:44711-44730 | Msa1426620:intron | 40.0% |
| AGACTAAACCCCAAAGAAAC+CGG | + | tig0026054:44722-44741 | None:intergenic | 40.0% | |
| !! | ATTGGTGTTAGAAGACATGC+TGG | - | tig0026054:44761-44780 | Msa1426620:intron | 40.0% |
| CATTTGCTTGAGCTTCTGTT+TGG | - | tig0026054:44870-44889 | Msa1426620:intron | 40.0% | |
| CCCAATATGCAACAGTTGAA+TGG | - | tig0026054:45511-45530 | Msa1426620:intron | 40.0% | |
| !! | ATTCACCTTGTTGGCTTGTT+GGG | + | tig0026054:45722-45741 | None:intergenic | 40.0% |
| CATTAGAGCTAGATTCAGCT+AGG | + | tig0026054:45769-45788 | None:intergenic | 40.0% | |
| GGTCAAACTGACAAATGACA+AGG | + | tig0026054:45837-45856 | None:intergenic | 40.0% | |
| ! | GTTGTGATTAGTTATGCGCA+AGG | + | tig0026054:46164-46183 | None:intergenic | 40.0% |
| ! | CAATTTGAGAACTGGTTCCT+AGG | - | tig0026054:46391-46410 | Msa1426620:intron | 40.0% |
| !! | ATATGGTTGGTGAATTCCCT+AGG | + | tig0026054:46411-46430 | None:intergenic | 40.0% |
| GATATTTCCCATAAGGCTGA+AGG | - | tig0026054:46447-46466 | Msa1426620:intron | 40.0% | |
| ! | TCGTTGGAAGCATATGGATA+TGG | - | tig0026054:46473-46492 | Msa1426620:intron | 40.0% |
| ! | CGTTGGAAGCATATGGATAT+GGG | - | tig0026054:46474-46493 | Msa1426620:intron | 40.0% |
| CATACTCAGCATTCATTTGG+TGG | - | tig0026054:46514-46533 | Msa1426620:intron | 40.0% | |
| ! | AATGAACTGGGTTGAACCTT+TGG | - | tig0026054:46549-46568 | Msa1426620:intron | 40.0% |
| AACCTCATAAACATCCACCT+TGG | - | tig0026054:47024-47043 | Msa1426620:intron | 40.0% | |
| !!! | GGAGGTCCCTTTATTTTTTG+TGG | - | tig0026054:47045-47064 | Msa1426620:intron | 40.0% |
| !! | TACTTGGTTTTCTCCTGTCT+TGG | - | tig0026054:47132-47151 | Msa1426620:intron | 40.0% |
| AAATTCATAGCCACCAAGAC+AGG | + | tig0026054:47148-47167 | None:intergenic | 40.0% | |
| !!! | GCTTTTGAAGCAGACTACTT+TGG | - | tig0026054:47273-47292 | Msa1426620:intron | 40.0% |
| TCGTGCCTAATGTCTATATG+TGG | - | tig0026054:47446-47465 | Msa1426620:intron | 40.0% | |
| GCAGATGGAGAAAGATATGT+TGG | + | tig0026054:47534-47553 | None:intergenic | 40.0% | |
| TCGCAAACAAAGCCTAAGTT+GGG | + | tig0026054:47740-47759 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGCGAGTT+TGG | - | tig0026054:47743-47762 | Msa1426620:intron | 40.0% |
| TTTGAGGGGTGGAAAATATG+AGG | - | tig0026054:47786-47805 | Msa1426620:intron | 40.0% | |
| TTGAGGGGTGGAAAATATGA+GGG | - | tig0026054:47787-47806 | Msa1426620:intron | 40.0% | |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | + | tig0026054:47960-47979 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | + | tig0026054:47961-47980 | None:intergenic | 40.0% |
| ACTAAACTCTCCTCATTTGG+GGG | + | tig0026054:47993-48012 | None:intergenic | 40.0% | |
| GAAATAGAGGAAAATGGGAG+GGG | + | tig0026054:48048-48067 | None:intergenic | 40.0% | |
| TGAGCAAGTGGAAGAAATAG+AGG | + | tig0026054:48061-48080 | None:intergenic | 40.0% | |
| GGAAAAAAGGAATGAGCAAG+TGG | + | tig0026054:48073-48092 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | tig0026054:48119-48138 | None:intergenic | 40.0% |
| AACAAAGCCTTAGTGGGATA+AGG | - | tig0026054:48127-48146 | Msa1426620:CDS | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | + | tig0026054:48237-48256 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | + | tig0026054:48238-48257 | None:intergenic | 40.0% |
| GGGATCTCTAATGCAAATGA+TGG | - | tig0026054:48291-48310 | Msa1426620:CDS | 40.0% | |
| !! | GTCATTTTGTCTGGATTCTG+TGG | - | tig0026054:48331-48350 | Msa1426620:CDS | 40.0% |
| ! | CAGCCATACACACAATTTTC+TGG | + | tig0026054:48396-48415 | None:intergenic | 40.0% |
| CAGAAAATTGTGTGTATGGC+TGG | - | tig0026054:48394-48413 | Msa1426620:CDS | 40.0% | |
| ACAGGTGCTTAACATGATTC+TGG | - | tig0026054:48419-48438 | Msa1426620:CDS | 40.0% | |
| ! | ATTCTGGCTGACATGTTTCA+AGG | - | tig0026054:48435-48454 | Msa1426620:CDS | 40.0% |
| ! | TTCTGGCTGACATGTTTCAA+GGG | - | tig0026054:48436-48455 | Msa1426620:CDS | 40.0% |
| GGCTACTAAAAATCCAAGCA+GGG | + | tig0026054:48529-48548 | None:intergenic | 40.0% | |
| AGGCTACTAAAAATCCAAGC+AGG | + | tig0026054:48530-48549 | None:intergenic | 40.0% | |
| ATAGGGGATACTATTTGCTC+TGG | - | tig0026054:48612-48631 | Msa1426620:CDS | 40.0% | |
| GGTACGTTTCATATACCAGA+AGG | + | tig0026054:48651-48670 | None:intergenic | 40.0% | |
| ! | AATACAGGGCACTAACTATG+CGG | + | tig0026054:48672-48691 | None:intergenic | 40.0% |
| AGAAGTGGAAATGGGTCTGA+GGG | + | tig0026054:44255-44274 | None:intergenic | 45.0% | |
| AAGAAGTGGAAATGGGTCTG+AGG | + | tig0026054:44256-44275 | None:intergenic | 45.0% | |
| ATGCGTAACGACGAATGCAA+AGG | - | tig0026054:44463-44482 | Msa1426620:intron | 45.0% | |
| GAAGCCAATGTAGCCACAAA+AGG | + | tig0026054:44500-44519 | None:intergenic | 45.0% | |
| !! | TTGTTTCTGGGTTGTTTGCG+TGG | - | tig0026054:44531-44550 | Msa1426620:intron | 45.0% |
| AGATTGTTCTGTGCTTCTGG+AGG | - | tig0026054:44614-44633 | Msa1426620:intron | 45.0% | |
| GATTGTTCTGTGCTTCTGGA+GGG | - | tig0026054:44615-44634 | Msa1426620:intron | 45.0% | |
| CATAGCGCAGAATGAGAAGA+AGG | + | tig0026054:44644-44663 | None:intergenic | 45.0% | |
| ACTTCAGTTGCTCTCTGTCA+TGG | - | tig0026054:44677-44696 | Msa1426620:intron | 45.0% | |
| ATCCAAACATGTCCTCAGTG+TGG | - | tig0026054:45174-45193 | Msa1426620:intron | 45.0% | |
| GACCGGAGAGGATGTAAAAT+TGG | - | tig0026054:45198-45217 | Msa1426620:intron | 45.0% | |
| AAACAAGTGCTACAACTGCC+AGG | + | tig0026054:45576-45595 | None:intergenic | 45.0% | |
| GGTTGAGACTCAGTACAACA+TGG | + | tig0026054:45629-45648 | None:intergenic | 45.0% | |
| TGACTTCATTTATGCCGGGA+GGG | + | tig0026054:45650-45669 | None:intergenic | 45.0% | |
| TCCCGGCATAAATGAAGTCA+CGG | - | tig0026054:45650-45669 | Msa1426620:intron | 45.0% | |
| TGCCGTGACTTCATTTATGC+CGG | + | tig0026054:45655-45674 | None:intergenic | 45.0% | |
| ATGAACCCAACAAGCCAACA+AGG | - | tig0026054:45714-45733 | Msa1426620:intron | 45.0% | |
| !! | CATTCACCTTGTTGGCTTGT+TGG | + | tig0026054:45723-45742 | None:intergenic | 45.0% |
| GAATAAAGGACGAAGGGACT+AGG | + | tig0026054:45799-45818 | None:intergenic | 45.0% | |
| GTGAACTCTTACGAGTCTAC+TGG | - | tig0026054:46079-46098 | Msa1426620:intron | 45.0% | |
| TTGCAACAAAGCTGTTCACC+TGG | - | tig0026054:46196-46215 | Msa1426620:intron | 45.0% | |
| ! | ACGAACACCTTCAGCCTTAT+GGG | + | tig0026054:46457-46476 | None:intergenic | 45.0% |
| AACGAACACCTTCAGCCTTA+TGG | + | tig0026054:46458-46477 | None:intergenic | 45.0% | |
| !! | ATAAGGCTGAAGGTGTTCGT+TGG | - | tig0026054:46457-46476 | Msa1426620:intron | 45.0% |
| ! | AGGTGTTCGTTGGAAGCATA+TGG | - | tig0026054:46467-46486 | Msa1426620:intron | 45.0% |
| CTCCAAGGTGGATGTTTATG+AGG | + | tig0026054:47029-47048 | None:intergenic | 45.0% | |
| CTCATAAACATCCACCTTGG+AGG | - | tig0026054:47027-47046 | Msa1426620:intron | 45.0% | |
| AAATAAAGGGACCTCCAAGG+TGG | + | tig0026054:47041-47060 | None:intergenic | 45.0% | |
| !! | TTGGTTTTCTCCTGTCTTGG+TGG | - | tig0026054:47135-47154 | Msa1426620:intron | 45.0% |
| ! | AAACAAAGCCTAAGTTGGGG+CGG | + | tig0026054:47736-47755 | None:intergenic | 45.0% |
| CGCAAACAAAGCCTAAGTTG+GGG | + | tig0026054:47739-47758 | None:intergenic | 45.0% | |
| CTCGCAAACAAAGCCTAAGT+TGG | + | tig0026054:47741-47760 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | tig0026054:47747-47766 | Msa1426620:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | tig0026054:47748-47767 | Msa1426620:intron | 45.0% |
| ! | TGTATTGGAGGAGGGTTTTG+GGG | + | tig0026054:47959-47978 | None:intergenic | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | tig0026054:47748-47767 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | tig0026054:47747-47766 | None:intergenic | 45.0% |
| ACTCGCAAACAAAGCCTTAG+TGG | - | tig0026054:48120-48139 | Msa1426620:CDS | 45.0% | |
| CTCGCAAACAAAGCCTTAGT+GGG | - | tig0026054:48121-48140 | Msa1426620:CDS | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | + | tig0026054:48239-48258 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | - | tig0026054:48236-48255 | Msa1426620:CDS | 45.0% | |
| ACCAGCAAACACTTGAGATG+GGG | + | tig0026054:48505-48524 | None:intergenic | 45.0% | |
| CACCAGCAAACACTTGAGAT+GGG | + | tig0026054:48506-48525 | None:intergenic | 45.0% | |
| !! | TTAAAATTATTATAGAATAA+AGG | + | tig0026054:45813-45832 | None:intergenic | 5.0% |
| GCAAAACGGAGGTTTGGGAA+TGG | - | tig0026054:44433-44452 | Msa1426620:intron | 50.0% | |
| TGGGTTGTTTGCGTGGTTTG+TGG | - | tig0026054:44538-44557 | Msa1426620:intron | 50.0% | |
| CTCCACACTGAGGACATGTT+TGG | + | tig0026054:45179-45198 | None:intergenic | 50.0% | |
| GTGACTTCATTTATGCCGGG+AGG | + | tig0026054:45651-45670 | None:intergenic | 50.0% | |
| GCCGTGACTTCATTTATGCC+GGG | + | tig0026054:45654-45673 | None:intergenic | 50.0% | |
| CTTCAGTCACAGTCACACTG+AGG | + | tig0026054:46951-46970 | None:intergenic | 50.0% | |
| CTCAGTGTGACTGTGACTGA+AGG | - | tig0026054:46949-46968 | Msa1426620:intron | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | tig0026054:47746-47765 | Msa1426620:intron | 50.0% |
| AGGGGAAGGGAAAGGTTTGA+GGG | - | tig0026054:47771-47790 | Msa1426620:intron | 50.0% | |
| !!! | GGGTTTTGGGGGTTTTTGGA+GGG | + | tig0026054:47947-47966 | None:intergenic | 50.0% |
| !!! | AGGGTTTTGGGGGTTTTTGG+AGG | + | tig0026054:47948-47967 | None:intergenic | 50.0% |
| !!! | AGGAGGGTTTTGGGGGTTTT+TGG | + | tig0026054:47951-47970 | None:intergenic | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+GGG | + | tig0026054:47958-47977 | None:intergenic | 50.0% |
| TAGAGGAAAATGGGAGGGGA+GGG | + | tig0026054:48044-48063 | None:intergenic | 50.0% | |
| ATAGAGGAAAATGGGAGGGG+AGG | + | tig0026054:48045-48064 | None:intergenic | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | + | tig0026054:48086-48105 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | + | tig0026054:48109-48128 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | tig0026054:47746-47765 | None:intergenic | 50.0% |
| AGCCTTAGTGGGATAAGGCT+CGG | - | tig0026054:48132-48151 | Msa1426620:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | tig0026054:48233-48252 | None:intergenic | 50.0% | |
| TTGTGTGTATGGCTGGACAC+AGG | - | tig0026054:48401-48420 | Msa1426620:CDS | 50.0% | |
| ACCCCATCTCAAGTGTTTGC+TGG | - | tig0026054:48501-48520 | Msa1426620:CDS | 50.0% | |
| GCACCAGCAAACACTTGAGA+TGG | + | tig0026054:48507-48526 | None:intergenic | 50.0% | |
| ACAACCTTGGCAGCAGAAAC+AGG | + | tig0026054:48550-48569 | None:intergenic | 50.0% | |
| TGCCAAGGTTGTGTTGTGGT+GGG | - | tig0026054:48558-48577 | Msa1426620:CDS | 50.0% | |
| AACCCACCACAACACAACCT+TGG | + | tig0026054:48563-48582 | None:intergenic | 50.0% | |
| !! | AGGTTGTGTTGTGGTGGGTT+AGG | - | tig0026054:48563-48582 | Msa1426620:CDS | 50.0% |
| !! | TTGTGGTGGGTTAGGTCGTT+AGG | - | tig0026054:48571-48590 | Msa1426620:CDS | 50.0% |
| GGGTTAGGTCGTTAGGACTT+AGG | - | tig0026054:48578-48597 | Msa1426620:CDS | 50.0% | |
| ACATGCTGGCATGCAAGCTC+AGG | - | tig0026054:44775-44794 | Msa1426620:intron | 55.0% | |
| CATGTCCTCAGTGTGGAGAC+CGG | - | tig0026054:45181-45200 | Msa1426620:intron | 55.0% | |
| GTACTGAGTCTCAACCCTCC+CGG | - | tig0026054:45633-45652 | Msa1426620:intron | 55.0% | |
| TGTTTGCGAGTTTGGAGGGG+AGG | - | tig0026054:47751-47770 | Msa1426620:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+GGG | - | tig0026054:47752-47771 | Msa1426620:intron | 55.0% | |
| TTTGCGAGTTTGGAGGGGAG+GGG | - | tig0026054:47753-47772 | Msa1426620:intron | 55.0% | |
| GAGGGGAAGGGAAAGGTTTG+AGG | - | tig0026054:47770-47789 | Msa1426620:intron | 55.0% | |
| GGGGAAGGGAAAGGTTTGAG+GGG | - | tig0026054:47772-47791 | Msa1426620:intron | 55.0% | |
| GAAGGGAAAGGTTTGAGGGG+TGG | - | tig0026054:47775-47794 | Msa1426620:intron | 55.0% | |
| AAATGGGAGGGGAGGGCTTT+GGG | + | tig0026054:48037-48056 | None:intergenic | 55.0% | |
| AAAATGGGAGGGGAGGGCTT+TGG | + | tig0026054:48038-48057 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | tig0026054:47752-47771 | None:intergenic | 55.0% | |
| ! | CACCGAGCCTTATCCCACTA+AGG | + | tig0026054:48137-48156 | None:intergenic | 55.0% |
| CTTAGTGGGATAAGGCTCGG+TGG | - | tig0026054:48135-48154 | Msa1426620:CDS | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+CGG | + | tig0026054:48225-48244 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | tig0026054:48225-48244 | Msa1426620:CDS | 55.0% | |
| !! | GTAGCCTGTTTCTGCTGCCA+AGG | - | tig0026054:48543-48562 | Msa1426620:CDS | 55.0% |
| CTGCTGCCAAGGTTGTGTTG+TGG | - | tig0026054:48554-48573 | Msa1426620:CDS | 55.0% | |
| CTGCCAAGGTTGTGTTGTGG+TGG | - | tig0026054:48557-48576 | Msa1426620:CDS | 55.0% | |
| ! | CCTAAGTTGGGGCGGCTACA+TGG | + | tig0026054:47728-47747 | None:intergenic | 60.0% |
| CCATGTAGCCGCCCCAACTT+AGG | - | tig0026054:47725-47744 | Msa1426620:intron | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | - | tig0026054:47758-47777 | Msa1426620:intron | 60.0% | |
| AATGGGAGGGGAGGGCTTTG+GGG | + | tig0026054:48036-48055 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | tig0026054:48104-48123 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | + | tig0026054:48105-48124 | None:intergenic | 60.0% | |
| GTGTAGCCGACCCCACTTAG+TGG | - | tig0026054:48224-48243 | Msa1426620:CDS | 60.0% | |
| ! | GTGTTTGCTGGTGCCCTGCT+TGG | - | tig0026054:48513-48532 | Msa1426620:CDS | 60.0% |
| CCTCTCCGGTCTCCACACTG+AGG | + | tig0026054:45189-45208 | None:intergenic | 65.0% | |
| CCTCAGTGTGGAGACCGGAG+AGG | - | tig0026054:45186-45205 | Msa1426620:intron | 65.0% | |
| CGAGTTTGGAGGGGAGGGGA+AGG | - | tig0026054:47757-47776 | Msa1426620:intron | 65.0% | |
| TGGAGGGGAGGGGAAGGGAA+AGG | - | tig0026054:47763-47782 | Msa1426620:intron | 65.0% | |
| ! | ATGGGAGGGGAGGGCTTTGG+GGG | + | tig0026054:48035-48054 | None:intergenic | 65.0% |
| GGGAAGGGAGGGGAAGGCTT+GGG | + | tig0026054:48094-48113 | None:intergenic | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | tig0026054:48100-48119 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | + | tig0026054:48106-48125 | None:intergenic | 65.0% | |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | + | tig0026054:48034-48053 | None:intergenic | 70.0% |
| GGGGAAGGGAGGGGAAGGCT+TGG | + | tig0026054:48095-48114 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026054 | gene | 44093 | 48781 | 44093 | ID=Msa1426620;Name=Msa1426620 |
| tig0026054 | mRNA | 44093 | 48781 | 44093 | ID=Msa1426620-mRNA-1;Parent=Msa1426620;Name=Msa1426620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|2|197|258 |
| tig0026054 | exon | 44093 | 44451 | 44093 | ID=Msa1426620-mRNA-1:exon:5036;Parent=Msa1426620-mRNA-1 |
| tig0026054 | exon | 48078 | 48781 | 48078 | ID=Msa1426620-mRNA-1:exon:5035;Parent=Msa1426620-mRNA-1 |
| tig0026054 | five_prime_UTR | 48693 | 48781 | 48693 | ID=Msa1426620-mRNA-1:five_prime_utr;Parent=Msa1426620-mRNA-1 |
| tig0026054 | CDS | 48078 | 48692 | 48078 | ID=Msa1426620-mRNA-1:cds;Parent=Msa1426620-mRNA-1 |
| tig0026054 | CDS | 44290 | 44451 | 44290 | ID=Msa1426620-mRNA-1:cds;Parent=Msa1426620-mRNA-1 |
| tig0026054 | three_prime_UTR | 44093 | 44289 | 44093 | ID=Msa1426620-mRNA-1:three_prime_utr;Parent=Msa1426620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
