Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341440 | XP_013450604.1 | 89.189 | 259 | 23 | 2 | 1 | 259 | 1 | 254 | 4.37e-155 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341440 | sp|O32107|YUID_BACSU | 48.322 | 149 | 62 | 2 | 112 | 247 | 3 | 149 | 5.19e-28 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341440 | A0A072U4K7 | 89.189 | 259 | 23 | 2 | 1 | 259 | 1 | 254 | 2.09e-155 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa1341440 | 0.823679 | 1.216562e-53 | -8.615850e-47 |
| Msa0045660 | Msa1341440 | 0.824170 | 9.331277e-54 | -8.615850e-47 |
| Msa0096510 | Msa1341440 | 0.805865 | 1.086163e-49 | -8.615850e-47 |
| Msa0607440 | Msa1341440 | 0.813906 | 2.018757e-51 | -8.615850e-47 |
| Msa0622690 | Msa1341440 | 0.824904 | 6.269133e-54 | -8.615850e-47 |
| Msa0646390 | Msa1341440 | 0.819600 | 1.066604e-52 | -8.615850e-47 |
| Msa0650360 | Msa1341440 | 0.819921 | 9.007794e-53 | -8.615850e-47 |
| Msa0668160 | Msa1341440 | 0.831928 | 1.264247e-55 | -8.615850e-47 |
| Msa0685880 | Msa1341440 | 0.812064 | 5.116932e-51 | -8.615850e-47 |
| Msa0707780 | Msa1341440 | 0.805334 | 1.403501e-49 | -8.615850e-47 |
| Msa0722930 | Msa1341440 | 0.800970 | 1.122473e-48 | -8.615850e-47 |
| Msa0730180 | Msa1341440 | 0.806487 | 8.033909e-50 | -8.615850e-47 |
| Msa0749900 | Msa1341440 | 0.807678 | 4.494592e-50 | -8.615850e-47 |
| Msa0756480 | Msa1341440 | 0.802189 | 6.313661e-49 | -8.615850e-47 |
| Msa0760890 | Msa1341440 | 0.808118 | 3.623197e-50 | -8.615850e-47 |
| Msa0792510 | Msa1341440 | 0.819869 | 9.258808e-53 | -8.615850e-47 |
| Msa0814780 | Msa1341440 | 0.809383 | 1.944731e-50 | -8.615850e-47 |
| Msa0830120 | Msa1341440 | 0.811668 | 6.241232e-51 | -8.615850e-47 |
| Msa0830450 | Msa1341440 | 0.813883 | 2.043196e-51 | -8.615850e-47 |
| Msa0840630 | Msa1341440 | 0.811294 | 7.523034e-51 | -8.615850e-47 |
| Msa0148430 | Msa1341440 | 0.802227 | 6.199341e-49 | -8.615850e-47 |
| Msa0162030 | Msa1341440 | 0.813232 | 2.840656e-51 | -8.615850e-47 |
| Msa0162050 | Msa1341440 | 0.823785 | 1.149084e-53 | -8.615850e-47 |
| Msa0162070 | Msa1341440 | 0.823818 | 1.128369e-53 | -8.615850e-47 |
| Msa0175530 | Msa1341440 | 0.805982 | 1.026388e-49 | -8.615850e-47 |
| Msa0206940 | Msa1341440 | 0.801303 | 9.597602e-49 | -8.615850e-47 |
| Msa1226600 | Msa1341440 | 0.800538 | 1.375362e-48 | -8.615850e-47 |
| Msa1229690 | Msa1341440 | 0.827055 | 1.932807e-54 | -8.615850e-47 |
| Msa1238370 | Msa1341440 | 0.809762 | 1.611698e-50 | -8.615850e-47 |
| Msa1258280 | Msa1341440 | 0.807050 | 6.107196e-50 | -8.615850e-47 |
| Msa1280120 | Msa1341440 | 0.811686 | 6.182227e-51 | -8.615850e-47 |
| Msa1310110 | Msa1341440 | 0.800934 | 1.141794e-48 | -8.615850e-47 |
| Msa1326000 | Msa1341440 | 0.813354 | 2.670925e-51 | -8.615850e-47 |
| Msa1329990 | Msa1341440 | 0.806251 | 9.006511e-50 | -8.615850e-47 |
| Msa1341440 | Msa1352060 | 0.802758 | 4.819228e-49 | -8.615850e-47 |
| Msa1341440 | Msa1371840 | 0.832924 | 7.161051e-56 | -8.615850e-47 |
| Msa1341440 | Msa1373950 | 0.826819 | 2.199915e-54 | -8.615850e-47 |
| Msa1341440 | Msa1395640 | 0.808243 | 3.408977e-50 | -8.615850e-47 |
| Msa1341440 | Msa1408190 | 0.808901 | 2.466117e-50 | -8.615850e-47 |
| Msa1341440 | Msa1426620 | 0.913342 | 6.881072e-84 | -8.615850e-47 |
| Msa1341440 | Msa1430760 | 0.800285 | 1.548527e-48 | -8.615850e-47 |
| Msa1341440 | Msa1431240 | 0.825087 | 5.674407e-54 | -8.615850e-47 |
| Msa1341440 | Msa1433380 | 0.806364 | 8.524832e-50 | -8.615850e-47 |
| Msa1341440 | Msa1437650 | 0.805553 | 1.262849e-49 | -8.615850e-47 |
| Msa1341440 | Msa1448990 | 0.807864 | 4.104547e-50 | -8.615850e-47 |
| Msa1341440 | Msa1460310 | -0.840167 | 1.023604e-57 | -8.615850e-47 |
| Msa0405250 | Msa1341440 | -0.813577 | 2.385455e-51 | -8.615850e-47 |
| Msa0408410 | Msa1341440 | 0.814118 | 1.813396e-51 | -8.615850e-47 |
| Msa0411000 | Msa1341440 | 0.800952 | 1.132229e-48 | -8.615850e-47 |
| Msa0413740 | Msa1341440 | 0.804471 | 2.126498e-49 | -8.615850e-47 |
| Msa0440110 | Msa1341440 | 0.815766 | 7.814151e-52 | -8.615850e-47 |
| Msa0476180 | Msa1341440 | 0.806584 | 7.664028e-50 | -8.615850e-47 |
| Msa1009220 | Msa1341440 | 0.816852 | 4.465779e-52 | -8.615850e-47 |
| Msa1028720 | Msa1341440 | 0.801834 | 7.469738e-49 | -8.615850e-47 |
| Msa1036390 | Msa1341440 | 0.806163 | 9.402122e-50 | -8.615850e-47 |
| Msa1044450 | Msa1341440 | 0.800287 | 1.546700e-48 | -8.615850e-47 |
| Msa1067710 | Msa1341440 | 0.809116 | 2.218067e-50 | -8.615850e-47 |
| Msa1076680 | Msa1341440 | 0.807303 | 5.399381e-50 | -8.615850e-47 |
| Msa1080430 | Msa1341440 | 0.819165 | 1.340294e-52 | -8.615850e-47 |
| Msa1081700 | Msa1341440 | 0.804441 | 2.156672e-49 | -8.615850e-47 |
| Msa1087530 | Msa1341440 | 0.803982 | 2.687581e-49 | -8.615850e-47 |
| Msa0251140 | Msa1341440 | 0.806251 | 9.007941e-50 | -8.615850e-47 |
| Msa0264940 | Msa1341440 | -0.839094 | 1.945723e-57 | -8.615850e-47 |
| Msa0298940 | Msa1341440 | 0.809774 | 1.602477e-50 | -8.615850e-47 |
| Msa0302990 | Msa1341440 | -0.840615 | 7.817373e-58 | -8.615850e-47 |
| Msa0312780 | Msa1341440 | 0.818973 | 1.482336e-52 | -8.615850e-47 |
| Msa1107970 | Msa1341440 | 0.802607 | 5.177941e-49 | -8.615850e-47 |
| Msa1113210 | Msa1341440 | 0.801129 | 1.041672e-48 | -8.615850e-47 |
| Msa1130460 | Msa1341440 | 0.921170 | 5.042957e-88 | -8.615850e-47 |
| Msa1130480 | Msa1341440 | 0.919689 | 3.286987e-87 | -8.615850e-47 |
| Msa1130650 | Msa1341440 | 0.813011 | 3.176292e-51 | -8.615850e-47 |
| Msa1151960 | Msa1341440 | 0.830401 | 2.997819e-55 | -8.615850e-47 |
| Msa1151970 | Msa1341440 | 0.803869 | 2.836630e-49 | -8.615850e-47 |
| Msa1161760 | Msa1341440 | 0.801470 | 8.868488e-49 | -8.615850e-47 |
| Msa1191390 | Msa1341440 | 0.825525 | 4.470144e-54 | -8.615850e-47 |
| Msa1201990 | Msa1341440 | 0.811789 | 5.873552e-51 | -8.615850e-47 |
| Msa1211070 | Msa1341440 | 0.802536 | 5.354723e-49 | -8.615850e-47 |
| Msa1212740 | Msa1341440 | 0.810312 | 1.227074e-50 | -8.615850e-47 |
| Msa1212960 | Msa1341440 | 0.809802 | 1.580318e-50 | -8.615850e-47 |
| Msa1222580 | Msa1341440 | 0.805798 | 1.121939e-49 | -8.615850e-47 |
| Msa0504730 | Msa1341440 | 0.800456 | 1.428816e-48 | -8.615850e-47 |
| Msa0505390 | Msa1341440 | 0.806928 | 6.480986e-50 | -8.615850e-47 |
| Msa0524050 | Msa1341440 | 0.802070 | 6.677986e-49 | -8.615850e-47 |
| Msa0528740 | Msa1341440 | 0.815311 | 9.865614e-52 | -8.615850e-47 |
| Msa0549740 | Msa1341440 | 0.833731 | 4.507055e-56 | -8.615850e-47 |
| Msa0555980 | Msa1341440 | 0.816688 | 4.860346e-52 | -8.615850e-47 |
| Msa0569290 | Msa1341440 | 0.804717 | 1.889139e-49 | -8.615850e-47 |
| Msa0574170 | Msa1341440 | 0.807616 | 4.633783e-50 | -8.615850e-47 |
| Msa0575250 | Msa1341440 | 0.806714 | 7.192741e-50 | -8.615850e-47 |
| Msa0846640 | Msa1341440 | 0.818129 | 2.302127e-52 | -8.615850e-47 |
| Msa0883660 | Msa1341440 | 0.800883 | 1.169563e-48 | -8.615850e-47 |
| Msa0887000 | Msa1341440 | 0.806878 | 6.641942e-50 | -8.615850e-47 |
| Msa0964680 | Msa1341440 | 0.804758 | 1.852389e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341440 | MtrunA17_Chr7g0275651 | 87.857 | 140 | 13 | 1 | 124 | 259 | 100 | 239 | 3.87e-82 | 246 |
| Msa1341440 | MtrunA17_Chr3g0122831 | 50.000 | 136 | 67 | 1 | 115 | 249 | 17 | 152 | 1.11e-40 | 137 |
| Msa1341440 | MtrunA17_Chr2g0322301 | 43.137 | 153 | 84 | 2 | 97 | 248 | 10 | 160 | 6.37e-38 | 130 |
| Msa1341440 | MtrunA17_Chr2g0309391 | 32.203 | 118 | 79 | 1 | 109 | 225 | 55 | 172 | 2.78e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341440 | AT3G61770.1 | 67.453 | 212 | 55 | 2 | 60 | 257 | 71 | 282 | 4.61e-100 | 293 |
| Msa1341440 | AT1G67600.1 | 50.365 | 137 | 67 | 1 | 114 | 249 | 17 | 153 | 6.46e-41 | 139 |
| Msa1341440 | AT1G24350.1 | 49.242 | 132 | 66 | 1 | 114 | 244 | 21 | 152 | 3.82e-39 | 134 |
| Msa1341440 | AT1G24350.5 | 48.800 | 125 | 63 | 1 | 114 | 237 | 21 | 145 | 3.87e-36 | 126 |
| Msa1341440 | AT1G24350.3 | 48.000 | 125 | 64 | 1 | 114 | 237 | 21 | 145 | 8.12e-36 | 126 |
| Msa1341440 | AT1G24350.2 | 48.000 | 125 | 64 | 1 | 114 | 237 | 21 | 145 | 8.65e-36 | 125 |
| Msa1341440 | AT1G24350.4 | 48.387 | 124 | 63 | 1 | 114 | 236 | 21 | 144 | 1.19e-35 | 124 |
| Msa1341440 | AT3G21610.1 | 47.761 | 134 | 68 | 2 | 116 | 248 | 35 | 167 | 9.72e-35 | 123 |
| Msa1341440 | AT3G21610.2 | 48.214 | 112 | 57 | 1 | 138 | 248 | 4 | 115 | 5.78e-30 | 109 |
| Msa1341440 | AT3G12685.1 | 33.962 | 159 | 85 | 3 | 109 | 247 | 47 | 205 | 2.03e-19 | 84.3 |
Find 78 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCAAAGAAACCATAAT+TGG | 0.165680 | tig0004829:+1939 | Msa1341440:CDS |
| TTGAGATTGTTCTGTGCTTC+TGG | 0.174739 | tig0004829:+2226 | Msa1341440:CDS |
| AAACCCAATTATGGTTTCTT+TGG | 0.186378 | tig0004829:-1943 | None:intergenic |
| TTTAGCTTTCTTTCACTAAT+TGG | 0.198388 | tig0004829:-6077 | None:intergenic |
| TAGAATAGAGTAGAATGTTT+TGG | 0.283796 | tig0004829:-1758 | None:intergenic |
| CAGCATGAGTATAATGTAAA+TGG | 0.284295 | tig0004829:+6335 | Msa1341440:three_prime_UTR |
| AAGGGAATGAAACCCAATTA+TGG | 0.289882 | tig0004829:-1952 | None:intergenic |
| ACTTAGGATTATTGATTGAT+AGG | 0.294726 | tig0004829:+6209 | Msa1341440:three_prime_UTR |
| CCTCCGGTAGTAAATATAAA+TGG | 0.306046 | tig0004829:+6369 | Msa1341440:three_prime_UTR |
| GGACAATGATGATGGAAGTT+TGG | 0.337325 | tig0004829:-1822 | None:intergenic |
| GATGGAAGTTTGGAAGTTAG+AGG | 0.347072 | tig0004829:-1812 | None:intergenic |
| TCTTTGGGAATTATCTGAAT+TGG | 0.350821 | tig0004829:-1927 | None:intergenic |
| AACCCAATTATGGTTTCTTT+GGG | 0.351443 | tig0004829:-1942 | None:intergenic |
| TGTTTGATTGTTTGCGCAAA+AGG | 0.358717 | tig0004829:-1971 | None:intergenic |
| CTTAGGATTATTGATTGATA+GGG | 0.375389 | tig0004829:+6210 | Msa1341440:three_prime_UTR |
| TTGAGAACAAGAAGTGGAAA+TGG | 0.382093 | tig0004829:-1873 | None:intergenic |
| TACTTGCAAAACGGAGGTTT+GGG | 0.382574 | tig0004829:+2043 | Msa1341440:CDS |
| TTACTTGCAAAACGGAGGTT+TGG | 0.395141 | tig0004829:+2042 | Msa1341440:CDS |
| ATTGTTATGTATGATGCTAT+TGG | 0.409979 | tig0004829:+2358 | Msa1341440:CDS |
| GTGTTTGCTGGTGCCCTGCT+TGG | 0.410993 | tig0004829:+6128 | Msa1341440:CDS |
| GTTGAATTATTGAATATAAG+AGG | 0.412331 | tig0004829:-1731 | None:intergenic |
| GGTAATATAATGCAACCTTC+TGG | 0.413830 | tig0004829:+6248 | Msa1341440:three_prime_UTR |
| ACCCCATCTCAAGTGTTTGC+TGG | 0.426034 | tig0004829:+6116 | Msa1341440:CDS |
| AGGTTGTGTTGTGGTGGGTT+AGG | 0.437936 | tig0004829:+6178 | Msa1341440:CDS |
| TTCCCAAAGAAACCATAATT+GGG | 0.445716 | tig0004829:+1940 | Msa1341440:CDS |
| GGGTTAGGTCGTTAGGACTT+AGG | 0.447284 | tig0004829:+6193 | Msa1341440:exon |
| AGAAAGCTAAAGGAACTTCT+TGG | 0.460632 | tig0004829:+6089 | Msa1341440:CDS |
| ACAGGTGCTTAACATGATTC+TGG | 0.467232 | tig0004829:+6034 | Msa1341440:intron |
| TTGTGGTGGGTTAGGTCGTT+AGG | 0.469090 | tig0004829:+6186 | Msa1341440:exon |
| ATTCTGGCTGACATGTTTCA+AGG | 0.469695 | tig0004829:+6050 | Msa1341440:CDS |
| AGACTAAACCCCAAAGAAAC+CGG | 0.472907 | tig0004829:-2334 | None:intergenic |
| ATTTCTTTGTAGAAAGAAAG+TGG | 0.473240 | tig0004829:+2200 | Msa1341440:CDS |
| ACAACCTTGGCAGCAGAAAC+AGG | 0.473702 | tig0004829:-6162 | None:intergenic |
| TGTGCTTGAATGATGAATAC+AGG | 0.475864 | tig0004829:-6299 | None:intergenic |
| GTAGCCTGTTTCTGCTGCCA+AGG | 0.476759 | tig0004829:+6158 | Msa1341440:CDS |
| GAAGTTTGGAAGTTAGAGGA+AGG | 0.482388 | tig0004829:-1808 | None:intergenic |
| AACAACCCAGAAACAAAAGT+TGG | 0.487269 | tig0004829:-2139 | None:intergenic |
| TGAGAACAAGAAGTGGAAAT+GGG | 0.496852 | tig0004829:-1872 | None:intergenic |
| GAAGCCAATGTAGCCACAAA+AGG | 0.498839 | tig0004829:-2112 | None:intergenic |
| GTTTGATTGTTTGCGCAAAA+GGG | 0.499743 | tig0004829:-1970 | None:intergenic |
| TTGAATTATTGAATATAAGA+GGG | 0.500875 | tig0004829:-1730 | None:intergenic |
| TTTCTTTGTAGAAAGAAAGT+GGG | 0.502712 | tig0004829:+2201 | Msa1341440:CDS |
| ATAGGGGATACTATTTGCTC+TGG | 0.503787 | tig0004829:+6227 | Msa1341440:three_prime_UTR |
| CTGCCAAGGTTGTGTTGTGG+TGG | 0.507895 | tig0004829:+6172 | Msa1341440:CDS |
| ACATGCTGGCATGCAAGCTC+AGG | 0.509605 | tig0004829:+2390 | Msa1341440:CDS |
| ACTTCAGTTGCTCTCTGTCA+TGG | 0.510430 | tig0004829:+2292 | Msa1341440:CDS |
| CATAGCGCAGAATGAGAAGA+AGG | 0.513464 | tig0004829:-2256 | None:intergenic |
| GCACCAGCAAACACTTGAGA+TGG | 0.518672 | tig0004829:-6119 | None:intergenic |
| ATTCTATTCTAGCTAACTCA+TGG | 0.519833 | tig0004829:+1775 | Msa1341440:exon |
| AATTAGTGAAAGAAAGCTAA+AGG | 0.524355 | tig0004829:+6079 | Msa1341440:CDS |
| TTAGGATTATTGATTGATAG+GGG | 0.524996 | tig0004829:+6211 | Msa1341440:three_prime_UTR |
| GGACCATTTATATTTACTAC+CGG | 0.527603 | tig0004829:-6372 | None:intergenic |
| ACAACCCAGAAACAAAAGTT+GGG | 0.531405 | tig0004829:-2138 | None:intergenic |
| TGGGTTGTTTGCGTGGTTTG+TGG | 0.534535 | tig0004829:+2153 | Msa1341440:CDS |
| ATATAAGAGGGAAAGTGAAA+AGG | 0.536500 | tig0004829:-1718 | None:intergenic |
| GATTGTTCTGTGCTTCTGGA+GGG | 0.541900 | tig0004829:+2230 | Msa1341440:CDS |
| AGATTGTTCTGTGCTTCTGG+AGG | 0.542518 | tig0004829:+2229 | Msa1341440:CDS |
| AAGTGTTGTTACTTGCAAAA+CGG | 0.543044 | tig0004829:+2034 | Msa1341440:CDS |
| TGCCAAGGTTGTGTTGTGGT+GGG | 0.550908 | tig0004829:+6173 | Msa1341440:CDS |
| CACCAGCAAACACTTGAGAT+GGG | 0.556379 | tig0004829:-6118 | None:intergenic |
| TTGTTTCTGGGTTGTTTGCG+TGG | 0.569800 | tig0004829:+2146 | Msa1341440:CDS |
| GCAAAACGGAGGTTTGGGAA+TGG | 0.571722 | tig0004829:+2048 | Msa1341440:CDS |
| AAGTGAAAGGACAATGATGA+TGG | 0.573349 | tig0004829:-1830 | None:intergenic |
| ATAAGATTGAGAACAAGAAG+TGG | 0.576173 | tig0004829:-1879 | None:intergenic |
| CTGCTGCCAAGGTTGTGTTG+TGG | 0.588915 | tig0004829:+6169 | Msa1341440:CDS |
| AACCCACCACAACACAACCT+TGG | 0.598748 | tig0004829:-6175 | None:intergenic |
| AAGAAGTGGAAATGGGTCTG+AGG | 0.599234 | tig0004829:-1865 | None:intergenic |
| AGAAGTGGAAATGGGTCTGA+GGG | 0.601799 | tig0004829:-1864 | None:intergenic |
| TTCTGGCTGACATGTTTCAA+GGG | 0.603699 | tig0004829:+6051 | Msa1341440:CDS |
| ATGCGTAACGACGAATGCAA+AGG | 0.606693 | tig0004829:+2078 | Msa1341440:CDS |
| ATTGGTGTTAGAAGACATGC+TGG | 0.633014 | tig0004829:+2376 | Msa1341440:CDS |
| TGTTGTTACTTGCAAAACGG+AGG | 0.648402 | tig0004829:+2037 | Msa1341440:CDS |
| CCATTTATATTTACTACCGG+AGG | 0.653925 | tig0004829:-6369 | None:intergenic |
| GGTACGTTTCATATACCAGA+AGG | 0.659441 | tig0004829:-6263 | None:intergenic |
| GGTGTTGAAGTGAAAGTGAA+AGG | 0.663065 | tig0004829:-1843 | None:intergenic |
| GTGCTTGAATGATGAATACA+GGG | 0.665212 | tig0004829:-6298 | None:intergenic |
| ACCAGCAAACACTTGAGATG+GGG | 0.665470 | tig0004829:-6117 | None:intergenic |
| AATACAGGGCACTAACTATG+CGG | 0.735031 | tig0004829:-6284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTAATAAATAATTCAA+GGG | - | tig0004829:4327-4346 | None:intergenic | 10.0% |
| !! | TATTTGTAATAAATAATTCA+AGG | - | tig0004829:4328-4347 | None:intergenic | 10.0% |
| !!! | AATTTTTCTTTATAAACAAA+AGG | - | tig0004829:5984-6003 | None:intergenic | 10.0% |
| !! | TTGAATTATTGAATATAAGA+GGG | - | tig0004829:1733-1752 | None:intergenic | 15.0% |
| !! | TACTAATAATCAAATATGAA+AGG | - | tig0004829:2434-2453 | None:intergenic | 15.0% |
| !! | ACTGAAGATTTATATATATA+AGG | + | tig0004829:3858-3877 | Msa1341440:intron | 15.0% |
| !! | TTTGTAATAAATAATTCAAG+GGG | - | tig0004829:4326-4345 | None:intergenic | 15.0% |
| !!! | TATGAATTTTTTTGTTTTAG+AGG | + | tig0004829:4774-4793 | Msa1341440:intron | 15.0% |
| !! | TTAAAAAAAATGTATATGCT+TGG | + | tig0004829:4980-4999 | Msa1341440:intron | 15.0% |
| !! | ATAATTTACAGAAATGATAT+AGG | + | tig0004829:5024-5043 | Msa1341440:intron | 15.0% |
| !! | TAATTTACAGAAATGATATA+GGG | + | tig0004829:5025-5044 | Msa1341440:intron | 15.0% |
| !! | GTTGAATTATTGAATATAAG+AGG | - | tig0004829:1734-1753 | None:intergenic | 20.0% |
| !! | TAAAAACAACTTATGAGTTA+TGG | - | tig0004829:2708-2727 | None:intergenic | 20.0% |
| !!! | CAAAATAATTTGTGTAAACT+CGG | + | tig0004829:3029-3048 | Msa1341440:intron | 20.0% |
| !!! | AAAATAATTTGTGTAAACTC+GGG | + | tig0004829:3030-3049 | Msa1341440:intron | 20.0% |
| !!! | CATTTTAAGTTTTGTTATTG+TGG | + | tig0004829:3570-3589 | Msa1341440:intron | 20.0% |
| !! | TTTGTTGCAACTTAAATAAT+TGG | - | tig0004829:3801-3820 | None:intergenic | 20.0% |
| !! | AAGTTAAACAAAAATGAACT+GGG | + | tig0004829:4152-4171 | Msa1341440:intron | 20.0% |
| !! | TTGTACTATTTAAAAACCAA+AGG | - | tig0004829:4183-4202 | None:intergenic | 20.0% |
| !! | AATGTTCAAAATACTGAATA+TGG | - | tig0004829:4290-4309 | None:intergenic | 20.0% |
| !!! | TATTCAGTATTTTGAACATT+AGG | + | tig0004829:4290-4309 | Msa1341440:intron | 20.0% |
| !! | TTGTAATAAATAATTCAAGG+GGG | - | tig0004829:4325-4344 | None:intergenic | 20.0% |
| !! | ATTTATTACAAATAAACCAG+TGG | + | tig0004829:4334-4353 | Msa1341440:intron | 20.0% |
| !! | TTTCTAACAGTCTAAATATT+GGG | - | tig0004829:4810-4829 | None:intergenic | 20.0% |
| !!! | GGTATTATTTTTCCTTAAAT+TGG | + | tig0004829:4940-4959 | Msa1341440:intron | 20.0% |
| !!! | CATTTTTTTTAAATGACATC+CGG | - | tig0004829:4972-4991 | None:intergenic | 20.0% |
| !! | TTTATGATAGAACATTATGA+CGG | + | tig0004829:5309-5328 | Msa1341440:intron | 20.0% |
| !! | AGAATAGAGTAGAATGTTTT+GGG | - | tig0004829:1760-1779 | None:intergenic | 25.0% |
| !! | TAGAATAGAGTAGAATGTTT+TGG | - | tig0004829:1761-1780 | None:intergenic | 25.0% |
| ! | ATTTCTTTGTAGAAAGAAAG+TGG | + | tig0004829:2200-2219 | Msa1341440:CDS | 25.0% |
| ! | TTTCTTTGTAGAAAGAAAGT+GGG | + | tig0004829:2201-2220 | Msa1341440:CDS | 25.0% |
| ! | ATTGTTATGTATGATGCTAT+TGG | + | tig0004829:2358-2377 | Msa1341440:CDS | 25.0% |
| !! | ATTTCATAAGTTCTCTAAGA+TGG | - | tig0004829:2659-2678 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAGATTGTTT+GGG | - | tig0004829:2739-2758 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAGATTGTT+TGG | - | tig0004829:2740-2759 | None:intergenic | 25.0% |
| ! | CTAACTCAAAGAATATTAAG+AGG | + | tig0004829:2968-2987 | Msa1341440:intron | 25.0% |
| ! | TCAAAGAATATTAAGAGGTT+AGG | + | tig0004829:2973-2992 | Msa1341440:intron | 25.0% |
| ! | TTGCAAGAATTTGCAATAAT+AGG | - | tig0004829:3310-3329 | None:intergenic | 25.0% |
| ! | ATTATAGAATAAAGGACGAA+GGG | - | tig0004829:3420-3439 | None:intergenic | 25.0% |
| ! | TATTATAGAATAAAGGACGA+AGG | - | tig0004829:3421-3440 | None:intergenic | 25.0% |
| ! | AATAGCAGGTTAAAAATCAA+TGG | - | tig0004829:3473-3492 | None:intergenic | 25.0% |
| ! | GTAACATAATCTCTTTAGTT+TGG | + | tig0004829:3750-3769 | Msa1341440:intron | 25.0% |
| ! | TTGAATTAGGTTTGAATCTT+TGG | + | tig0004829:3949-3968 | Msa1341440:intron | 25.0% |
| ! | TTATATCTCAATTTGAGAAC+TGG | + | tig0004829:3998-4017 | Msa1341440:intron | 25.0% |
| ! | CTTACTAATGTCCAAAAATA+TGG | - | tig0004829:4043-4062 | None:intergenic | 25.0% |
| ! | TTAGTAAGATATTTCCCATA+AGG | + | tig0004829:4055-4074 | Msa1341440:intron | 25.0% |
| ! | GAAGTTAAACAAAAATGAAC+TGG | + | tig0004829:4151-4170 | Msa1341440:intron | 25.0% |
| !!! | ATATGGTTGGTAAATTTCTT+AGG | - | tig0004829:4273-4292 | None:intergenic | 25.0% |
| ! | TTCAAAATACTGAATATGGT+TGG | - | tig0004829:4286-4305 | None:intergenic | 25.0% |
| ! | AAATAAACCAGTGGAAAAAA+GGG | + | tig0004829:4343-4362 | Msa1341440:intron | 25.0% |
| ! | CAAACAATCTCATCATAATT+GGG | - | tig0004829:4402-4421 | None:intergenic | 25.0% |
| ! | GTAAAATTTAGTCACAAACA+GGG | - | tig0004829:4501-4520 | None:intergenic | 25.0% |
| !!! | ATGAGGTTTTAGATATAACA+TGG | - | tig0004829:4627-4646 | None:intergenic | 25.0% |
| ! | CAACATCCACAAAAAATAAA+GGG | - | tig0004829:4669-4688 | None:intergenic | 25.0% |
| ! | TCAACATCCACAAAAAATAA+AGG | - | tig0004829:4670-4689 | None:intergenic | 25.0% |
| ! | GTTTCTAACAGTCTAAATAT+TGG | - | tig0004829:4811-4830 | None:intergenic | 25.0% |
| ! | AATGAAGAAACATAGTTCAA+GGG | - | tig0004829:4839-4858 | None:intergenic | 25.0% |
| ! | AACTATGTTTCTTCATTGAT+AGG | + | tig0004829:4842-4861 | Msa1341440:intron | 25.0% |
| ! | AAAAAAATGTATATGCTTGG+TGG | + | tig0004829:4983-5002 | Msa1341440:intron | 25.0% |
| ! | TTTCAAACTAACAAAAGACT+GGG | - | tig0004829:5126-5145 | None:intergenic | 25.0% |
| ! | AGAAATACATAAAATGCAGA+TGG | - | tig0004829:5164-5183 | None:intergenic | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | - | tig0004829:5582-5601 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | tig0004829:5586-5605 | None:intergenic | 25.0% |
| !! | GTTATTGTTGTATTTCTGTA+GGG | + | tig0004829:5772-5791 | Msa1341440:intron | 25.0% |
| !! | TGTTGTTGTTGTATTTATGT+AGG | + | tig0004829:5878-5897 | Msa1341440:intron | 25.0% |
| !! | GTTGTTGTTGTATTTATGTA+GGG | + | tig0004829:5879-5898 | Msa1341440:intron | 25.0% |
| !!! | TTTAGCTTTCTTTCACTAAT+TGG | - | tig0004829:6080-6099 | None:intergenic | 25.0% |
| ! | AATTAGTGAAAGAAAGCTAA+AGG | + | tig0004829:6079-6098 | Msa1341440:CDS | 25.0% |
| !! | ACTTAGGATTATTGATTGAT+AGG | + | tig0004829:6209-6228 | Msa1341440:three_prime_UTR | 25.0% |
| !! | CTTAGGATTATTGATTGATA+GGG | + | tig0004829:6210-6229 | Msa1341440:three_prime_UTR | 25.0% |
| !! | TTAGGATTATTGATTGATAG+GGG | + | tig0004829:6211-6230 | Msa1341440:three_prime_UTR | 25.0% |
| ATATAAGAGGGAAAGTGAAA+AGG | - | tig0004829:1721-1740 | None:intergenic | 30.0% | |
| ! | ATTCTATTCTAGCTAACTCA+TGG | + | tig0004829:1775-1794 | Msa1341440:exon | 30.0% |
| ATAAGATTGAGAACAAGAAG+TGG | - | tig0004829:1882-1901 | None:intergenic | 30.0% | |
| ! | TCTTTGGGAATTATCTGAAT+TGG | - | tig0004829:1930-1949 | None:intergenic | 30.0% |
| ATTCCCAAAGAAACCATAAT+TGG | + | tig0004829:1939-1958 | Msa1341440:CDS | 30.0% | |
| TTCCCAAAGAAACCATAATT+GGG | + | tig0004829:1940-1959 | Msa1341440:CDS | 30.0% | |
| AACCCAATTATGGTTTCTTT+GGG | - | tig0004829:1945-1964 | None:intergenic | 30.0% | |
| AAACCCAATTATGGTTTCTT+TGG | - | tig0004829:1946-1965 | None:intergenic | 30.0% | |
| ! | TTCATCGGAAACTTTCTTTT+TGG | - | tig0004829:2014-2033 | None:intergenic | 30.0% |
| ! | CAAGTAACAACACTTTTCAT+CGG | - | tig0004829:2029-2048 | None:intergenic | 30.0% |
| ! | AAGTGTTGTTACTTGCAAAA+CGG | + | tig0004829:2034-2053 | Msa1341440:CDS | 30.0% |
| TATTTGAGCTGCTTATTTAC+TGG | - | tig0004829:2764-2783 | None:intergenic | 30.0% | |
| !! | TGAATCTAGCTCTAATGAAA+AGG | + | tig0004829:3387-3406 | Msa1341440:intron | 30.0% |
| !! | TGTGCACTACTTTTGAATTA+TGG | + | tig0004829:3537-3556 | Msa1341440:intron | 30.0% |
| ! | AATTTTCACATGACTAGAGT+AGG | + | tig0004829:3881-3900 | Msa1341440:intron | 30.0% |
| TATACTCAGCATTCATTTAG+TGG | + | tig0004829:3906-3925 | Msa1341440:intron | 30.0% | |
| TGGCAAATAATGAATTAGCT+AGG | + | tig0004829:3926-3945 | Msa1341440:intron | 30.0% | |
| ! | TGAATTAGCTAGGTTGAATT+AGG | + | tig0004829:3936-3955 | Msa1341440:intron | 30.0% |
| ! | GAATTCACCAACCATATTTT+TGG | + | tig0004829:4029-4048 | Msa1341440:intron | 30.0% |
| CTAATGTCCAAAAATATGGT+TGG | - | tig0004829:4039-4058 | None:intergenic | 30.0% | |
| CAAATAAACCAGTGGAAAAA+AGG | + | tig0004829:4342-4361 | Msa1341440:intron | 30.0% | |
| ! | CAGTATACAGTTTTGCAATT+TGG | + | tig0004829:4373-4392 | Msa1341440:intron | 30.0% |
| GCAAACAATCTCATCATAAT+TGG | - | tig0004829:4403-4422 | None:intergenic | 30.0% | |
| TGAACCATATAGCTAAGTTA+TGG | + | tig0004829:4446-4465 | Msa1341440:intron | 30.0% | |
| CTTTCCATAACTTAGCTATA+TGG | - | tig0004829:4453-4472 | None:intergenic | 30.0% | |
| CGTAAAATTTAGTCACAAAC+AGG | - | tig0004829:4502-4521 | None:intergenic | 30.0% | |
| TTACGCGTTCATATAATCAT+TGG | + | tig0004829:4517-4536 | Msa1341440:intron | 30.0% | |
| TACGCGTTCATATAATCATT+GGG | + | tig0004829:4518-4537 | Msa1341440:intron | 30.0% | |
| TTAGATATAACATGGAGATG+AGG | - | tig0004829:4619-4638 | None:intergenic | 30.0% | |
| !! | TTTGTTGATTTGCGAATACT+TGG | + | tig0004829:4731-4750 | Msa1341440:intron | 30.0% |
| ATGAAGAAACATAGTTCAAG+GGG | - | tig0004829:4838-4857 | None:intergenic | 30.0% | |
| CAATGAAGAAACATAGTTCA+AGG | - | tig0004829:4840-4859 | None:intergenic | 30.0% | |
| TTCCTTAAATTGGAAAGAAC+CGG | + | tig0004829:4950-4969 | Msa1341440:intron | 30.0% | |
| GTTTCAAACTAACAAAAGAC+TGG | - | tig0004829:5127-5146 | None:intergenic | 30.0% | |
| TTGTACAGAAATGATCACTT+GGG | + | tig0004829:5225-5244 | Msa1341440:intron | 30.0% | |
| CAAAAAACATTAGAGTAAGC+TGG | - | tig0004829:5261-5280 | None:intergenic | 30.0% | |
| ! | GTTAGTATTTCTGTAGTGTT+AGG | + | tig0004829:5280-5299 | Msa1341440:intron | 30.0% |
| ATTTCTGTAGTGTTAGGATA+TGG | + | tig0004829:5286-5305 | Msa1341440:intron | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | - | tig0004829:5583-5602 | None:intergenic | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | - | tig0004829:5589-5608 | None:intergenic | 30.0% | |
| ATACTAAACTCTCCTCATTT+GGG | - | tig0004829:5610-5629 | None:intergenic | 30.0% | |
| AATACTAAACTCTCCTCATT+TGG | - | tig0004829:5611-5630 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+GGG | - | tig0004829:5668-5687 | None:intergenic | 30.0% | |
| ! | GGTTATTGTTGTATTTCTGT+AGG | + | tig0004829:5771-5790 | Msa1341440:intron | 30.0% |
| TGTTGTATTTATGTAGGGTT+AGG | + | tig0004829:5884-5903 | Msa1341440:intron | 30.0% | |
| GTTGTATTTATGTAGGGTTA+GGG | + | tig0004829:5885-5904 | Msa1341440:intron | 30.0% | |
| TTGTATTTATGTAGGGTTAG+GGG | + | tig0004829:5886-5905 | Msa1341440:intron | 30.0% | |
| !!! | AGATCTATTGTCATTTTGTC+TGG | + | tig0004829:5937-5956 | Msa1341440:intron | 30.0% |
| CAGCATGAGTATAATGTAAA+TGG | + | tig0004829:6335-6354 | Msa1341440:three_prime_UTR | 30.0% | |
| !!! | AATGGAGATTTTTTTTCCTC+CGG | + | tig0004829:6353-6372 | Msa1341440:three_prime_UTR | 30.0% |
| GGACCATTTATATTTACTAC+CGG | - | tig0004829:6375-6394 | None:intergenic | 30.0% | |
| AAGTGAAAGGACAATGATGA+TGG | - | tig0004829:1833-1852 | None:intergenic | 35.0% | |
| TGAGAACAAGAAGTGGAAAT+GGG | - | tig0004829:1875-1894 | None:intergenic | 35.0% | |
| TTGAGAACAAGAAGTGGAAA+TGG | - | tig0004829:1876-1895 | None:intergenic | 35.0% | |
| AAGGGAATGAAACCCAATTA+TGG | - | tig0004829:1955-1974 | None:intergenic | 35.0% | |
| GTTTGATTGTTTGCGCAAAA+GGG | - | tig0004829:1973-1992 | None:intergenic | 35.0% | |
| TGTTTGATTGTTTGCGCAAA+AGG | - | tig0004829:1974-1993 | None:intergenic | 35.0% | |
| !! | TCAAACCCAACTTTTGTTTC+TGG | + | tig0004829:2133-2152 | Msa1341440:CDS | 35.0% |
| !! | CAAACCCAACTTTTGTTTCT+GGG | + | tig0004829:2134-2153 | Msa1341440:CDS | 35.0% |
| ACAACCCAGAAACAAAAGTT+GGG | - | tig0004829:2141-2160 | None:intergenic | 35.0% | |
| AACAACCCAGAAACAAAAGT+TGG | - | tig0004829:2142-2161 | None:intergenic | 35.0% | |
| !!! | TGTTGCTGATTCTCTTTTTC+CGG | + | tig0004829:2315-2334 | Msa1341440:CDS | 35.0% |
| ! | TTCTCTTTTTCCGGTTTCTT+TGG | + | tig0004829:2324-2343 | Msa1341440:CDS | 35.0% |
| ! | TCTCTTTTTCCGGTTTCTTT+GGG | + | tig0004829:2325-2344 | Msa1341440:CDS | 35.0% |
| ! | ATCCAATTTTACATCCTCTC+CGG | - | tig0004829:2818-2837 | None:intergenic | 35.0% |
| TGACAAAATCTGCATAGCTA+TGG | + | tig0004829:2929-2948 | Msa1341440:intron | 35.0% | |
| TATTAAGAGGTTAGGACTCT+AGG | + | tig0004829:2981-3000 | Msa1341440:intron | 35.0% | |
| CACATAGAATTGTGAGTTTG+AGG | + | tig0004829:3071-3090 | Msa1341440:intron | 35.0% | |
| CCATTCAACTGTTGCATATT+GGG | - | tig0004829:3129-3148 | None:intergenic | 35.0% | |
| ACCATTCAACTGTTGCATAT+TGG | - | tig0004829:3130-3149 | None:intergenic | 35.0% | |
| TAGTGCACAAAACATTAACC+TGG | + | tig0004829:3170-3189 | Msa1341440:intron | 35.0% | |
| AGTACAACATGGTTCACATT+TGG | - | tig0004829:3233-3252 | None:intergenic | 35.0% | |
| GTTAGATTCATTCACCTTGT+TGG | - | tig0004829:3346-3365 | None:intergenic | 35.0% | |
| AGCATAAGAAAGAGAATAGC+AGG | - | tig0004829:3487-3506 | None:intergenic | 35.0% | |
| CTCTTTCTTATGCTTAGTTG+TGG | + | tig0004829:3493-3512 | Msa1341440:intron | 35.0% | |
| AGTTATATCACTTAGAAGCC+AGG | - | tig0004829:3832-3851 | None:intergenic | 35.0% | |
| ! | AATTTGAGAACTGGTTCCTA+GGG | + | tig0004829:4007-4026 | Msa1341440:intron | 35.0% |
| TCACATACTCAGCATTCATT+TGG | + | tig0004829:4126-4145 | Msa1341440:intron | 35.0% | |
| ! | TGATGAAAGCTTCTGACTTT+TGG | - | tig0004829:4206-4225 | None:intergenic | 35.0% |
| ! | TCATTTTCCCTTTTTTCCAC+TGG | - | tig0004829:4353-4372 | None:intergenic | 35.0% |
| ATAGCTAAGTTATGGAAAGC+TGG | + | tig0004829:4454-4473 | Msa1341440:intron | 35.0% | |
| ATTGGGAGTCAAAATGATGA+TGG | + | tig0004829:4535-4554 | Msa1341440:intron | 35.0% | |
| ! | CTGAAGGAAGCTAAACATTT+TGG | + | tig0004829:4580-4599 | Msa1341440:intron | 35.0% |
| AAAAAATAAAGGGACCTCCA+AGG | - | tig0004829:4659-4678 | None:intergenic | 35.0% | |
| TGAAGAAACATAGTTCAAGG+GGG | - | tig0004829:4837-4856 | None:intergenic | 35.0% | |
| GTATAATGACAGTAAGATCG+AGG | + | tig0004829:4919-4938 | Msa1341440:intron | 35.0% | |
| ATCCGGTTCTTTCCAATTTA+AGG | - | tig0004829:4955-4974 | None:intergenic | 35.0% | |
| CTAGTCCACATATAGACATT+AGG | - | tig0004829:5069-5088 | None:intergenic | 35.0% | |
| GTGCTCCTAAATTATCAGTT+AGG | + | tig0004829:5088-5107 | Msa1341440:intron | 35.0% | |
| TCACGCCTAACTGATAATTT+AGG | - | tig0004829:5096-5115 | None:intergenic | 35.0% | |
| ATTTCAAGCATCTCTTGCTA+AGG | + | tig0004829:5202-5221 | Msa1341440:intron | 35.0% | |
| GTTGTACAGAAATGATCACT+TGG | + | tig0004829:5224-5243 | Msa1341440:intron | 35.0% | |
| GTGGAAAATATGAGGGAAAA+TGG | + | tig0004829:5409-5428 | Msa1341440:intron | 35.0% | |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | + | tig0004829:5595-5614 | Msa1341440:intron | 35.0% |
| TACTAAACTCTCCTCATTTG+GGG | - | tig0004829:5609-5628 | None:intergenic | 35.0% | |
| AGAAATAGAGGAAAATGGGA+GGG | - | tig0004829:5664-5683 | None:intergenic | 35.0% | |
| AAGAAATAGAGGAAAATGGG+AGG | - | tig0004829:5665-5684 | None:intergenic | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | - | tig0004829:5669-5688 | None:intergenic | 35.0% | |
| GGATCTCTAATGCAAATGAT+GGG | + | tig0004829:5907-5926 | Msa1341440:intron | 35.0% | |
| TGACCAGAAAATTGTGTGTA+TGG | + | tig0004829:6005-6024 | Msa1341440:intron | 35.0% | |
| AGAAAGCTAAAGGAACTTCT+TGG | + | tig0004829:6089-6108 | Msa1341440:CDS | 35.0% | |
| GGTAATATAATGCAACCTTC+TGG | + | tig0004829:6248-6267 | Msa1341440:three_prime_UTR | 35.0% | |
| GTGCTTGAATGATGAATACA+GGG | - | tig0004829:6301-6320 | None:intergenic | 35.0% | |
| TGTGCTTGAATGATGAATAC+AGG | - | tig0004829:6302-6321 | None:intergenic | 35.0% | |
| CCATTTATATTTACTACCGG+AGG | - | tig0004829:6372-6391 | None:intergenic | 35.0% | |
| CCTCCGGTAGTAAATATAAA+TGG | + | tig0004829:6369-6388 | Msa1341440:three_prime_UTR | 35.0% | |
| GAAGTTTGGAAGTTAGAGGA+AGG | - | tig0004829:1811-1830 | None:intergenic | 40.0% | |
| GATGGAAGTTTGGAAGTTAG+AGG | - | tig0004829:1815-1834 | None:intergenic | 40.0% | |
| !! | GGACAATGATGATGGAAGTT+TGG | - | tig0004829:1825-1844 | None:intergenic | 40.0% |
| ! | GGTGTTGAAGTGAAAGTGAA+AGG | - | tig0004829:1846-1865 | None:intergenic | 40.0% |
| ! | TGTTGTTACTTGCAAAACGG+AGG | + | tig0004829:2037-2056 | Msa1341440:CDS | 40.0% |
| TTACTTGCAAAACGGAGGTT+TGG | + | tig0004829:2042-2061 | Msa1341440:CDS | 40.0% | |
| TACTTGCAAAACGGAGGTTT+GGG | + | tig0004829:2043-2062 | Msa1341440:CDS | 40.0% | |
| !! | GGTCAAGATTAGTCCTTTTG+TGG | + | tig0004829:2099-2118 | Msa1341440:CDS | 40.0% |
| ! | TAGTCCTTTTGTGGCTACAT+TGG | + | tig0004829:2108-2127 | Msa1341440:CDS | 40.0% |
| TTGAGATTGTTCTGTGCTTC+TGG | + | tig0004829:2226-2245 | Msa1341440:CDS | 40.0% | |
| ! | CTCTTTTTCCGGTTTCTTTG+GGG | + | tig0004829:2326-2345 | Msa1341440:CDS | 40.0% |
| AGACTAAACCCCAAAGAAAC+CGG | - | tig0004829:2337-2356 | None:intergenic | 40.0% | |
| !! | ATTGGTGTTAGAAGACATGC+TGG | + | tig0004829:2376-2395 | Msa1341440:CDS | 40.0% |
| CATTTGCTTGAGCTTCTGTT+TGG | + | tig0004829:2485-2504 | Msa1341440:intron | 40.0% | |
| CCCAATATGCAACAGTTGAA+TGG | + | tig0004829:3126-3145 | Msa1341440:intron | 40.0% | |
| !! | ATTCACCTTGTTGGCTTGTT+GGG | - | tig0004829:3337-3356 | None:intergenic | 40.0% |
| CATTAGAGCTAGATTCAGCT+AGG | - | tig0004829:3384-3403 | None:intergenic | 40.0% | |
| GGTCAAACTGACAAATGACA+AGG | - | tig0004829:3452-3471 | None:intergenic | 40.0% | |
| ! | GTTGTGATTAGTTATGCGCA+AGG | - | tig0004829:3779-3798 | None:intergenic | 40.0% |
| ! | CAATTTGAGAACTGGTTCCT+AGG | + | tig0004829:4006-4025 | Msa1341440:intron | 40.0% |
| !! | ATATGGTTGGTGAATTCCCT+AGG | - | tig0004829:4026-4045 | None:intergenic | 40.0% |
| GATATTTCCCATAAGGCTGA+AGG | + | tig0004829:4062-4081 | Msa1341440:intron | 40.0% | |
| ! | TCGTTGGAAGCATATGGATA+TGG | + | tig0004829:4088-4107 | Msa1341440:intron | 40.0% |
| ! | CGTTGGAAGCATATGGATAT+GGG | + | tig0004829:4089-4108 | Msa1341440:intron | 40.0% |
| CATACTCAGCATTCATTTGG+TGG | + | tig0004829:4129-4148 | Msa1341440:intron | 40.0% | |
| ! | AATGAACTGGGTTGAACCTT+TGG | + | tig0004829:4164-4183 | Msa1341440:intron | 40.0% |
| AACCTCATAAACATCCACCT+TGG | + | tig0004829:4639-4658 | Msa1341440:intron | 40.0% | |
| !!! | GGAGGTCCCTTTATTTTTTG+TGG | + | tig0004829:4660-4679 | Msa1341440:intron | 40.0% |
| !! | TACTTGGTTTTCTCCTGTCT+TGG | + | tig0004829:4747-4766 | Msa1341440:intron | 40.0% |
| AAATTCATAGCCACCAAGAC+AGG | - | tig0004829:4763-4782 | None:intergenic | 40.0% | |
| !!! | GCTTTTGAAGCAGACTACTT+TGG | + | tig0004829:4888-4907 | Msa1341440:intron | 40.0% |
| TCGTGCCTAATGTCTATATG+TGG | + | tig0004829:5061-5080 | Msa1341440:intron | 40.0% | |
| GCAGATGGAGAAAGATATGT+TGG | - | tig0004829:5149-5168 | None:intergenic | 40.0% | |
| TCGCAAACAAAGCCTAAGTT+GGG | - | tig0004829:5355-5374 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGCGAGTT+TGG | + | tig0004829:5358-5377 | Msa1341440:intron | 40.0% |
| TTTGAGGGGTGGAAAATATG+AGG | + | tig0004829:5401-5420 | Msa1341440:intron | 40.0% | |
| TTGAGGGGTGGAAAATATGA+GGG | + | tig0004829:5402-5421 | Msa1341440:intron | 40.0% | |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | - | tig0004829:5575-5594 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | - | tig0004829:5576-5595 | None:intergenic | 40.0% |
| ACTAAACTCTCCTCATTTGG+GGG | - | tig0004829:5608-5627 | None:intergenic | 40.0% | |
| GAAATAGAGGAAAATGGGAG+GGG | - | tig0004829:5663-5682 | None:intergenic | 40.0% | |
| TGAGCAAGTGGAAGAAATAG+AGG | - | tig0004829:5676-5695 | None:intergenic | 40.0% | |
| GGAAAAAAGGAATGAGCAAG+TGG | - | tig0004829:5688-5707 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | - | tig0004829:5734-5753 | None:intergenic | 40.0% |
| AACAAAGCCTTAGTGGGATA+AGG | + | tig0004829:5742-5761 | Msa1341440:intron | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | tig0004829:5852-5871 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | tig0004829:5853-5872 | None:intergenic | 40.0% |
| GGGATCTCTAATGCAAATGA+TGG | + | tig0004829:5906-5925 | Msa1341440:intron | 40.0% | |
| !! | GTCATTTTGTCTGGATTCTG+TGG | + | tig0004829:5946-5965 | Msa1341440:intron | 40.0% |
| ! | CAGCCATACACACAATTTTC+TGG | - | tig0004829:6011-6030 | None:intergenic | 40.0% |
| CAGAAAATTGTGTGTATGGC+TGG | + | tig0004829:6009-6028 | Msa1341440:intron | 40.0% | |
| ACAGGTGCTTAACATGATTC+TGG | + | tig0004829:6034-6053 | Msa1341440:intron | 40.0% | |
| ! | ATTCTGGCTGACATGTTTCA+AGG | + | tig0004829:6050-6069 | Msa1341440:CDS | 40.0% |
| ! | TTCTGGCTGACATGTTTCAA+GGG | + | tig0004829:6051-6070 | Msa1341440:CDS | 40.0% |
| GGCTACTAAAAATCCAAGCA+GGG | - | tig0004829:6144-6163 | None:intergenic | 40.0% | |
| AGGCTACTAAAAATCCAAGC+AGG | - | tig0004829:6145-6164 | None:intergenic | 40.0% | |
| ATAGGGGATACTATTTGCTC+TGG | + | tig0004829:6227-6246 | Msa1341440:three_prime_UTR | 40.0% | |
| GGTACGTTTCATATACCAGA+AGG | - | tig0004829:6266-6285 | None:intergenic | 40.0% | |
| ! | AATACAGGGCACTAACTATG+CGG | - | tig0004829:6287-6306 | None:intergenic | 40.0% |
| AGAAGTGGAAATGGGTCTGA+GGG | - | tig0004829:1867-1886 | None:intergenic | 45.0% | |
| AAGAAGTGGAAATGGGTCTG+AGG | - | tig0004829:1868-1887 | None:intergenic | 45.0% | |
| ATGCGTAACGACGAATGCAA+AGG | + | tig0004829:2078-2097 | Msa1341440:CDS | 45.0% | |
| GAAGCCAATGTAGCCACAAA+AGG | - | tig0004829:2115-2134 | None:intergenic | 45.0% | |
| !! | TTGTTTCTGGGTTGTTTGCG+TGG | + | tig0004829:2146-2165 | Msa1341440:CDS | 45.0% |
| AGATTGTTCTGTGCTTCTGG+AGG | + | tig0004829:2229-2248 | Msa1341440:CDS | 45.0% | |
| GATTGTTCTGTGCTTCTGGA+GGG | + | tig0004829:2230-2249 | Msa1341440:CDS | 45.0% | |
| CATAGCGCAGAATGAGAAGA+AGG | - | tig0004829:2259-2278 | None:intergenic | 45.0% | |
| ACTTCAGTTGCTCTCTGTCA+TGG | + | tig0004829:2292-2311 | Msa1341440:CDS | 45.0% | |
| ATCCAAACATGTCCTCAGTG+TGG | + | tig0004829:2789-2808 | Msa1341440:intron | 45.0% | |
| GACCGGAGAGGATGTAAAAT+TGG | + | tig0004829:2813-2832 | Msa1341440:intron | 45.0% | |
| AAACAAGTGCTACAACTGCC+AGG | - | tig0004829:3191-3210 | None:intergenic | 45.0% | |
| GGTTGAGACTCAGTACAACA+TGG | - | tig0004829:3244-3263 | None:intergenic | 45.0% | |
| TGACTTCATTTATGCCGGGA+GGG | - | tig0004829:3265-3284 | None:intergenic | 45.0% | |
| TCCCGGCATAAATGAAGTCA+CGG | + | tig0004829:3265-3284 | Msa1341440:intron | 45.0% | |
| TGCCGTGACTTCATTTATGC+CGG | - | tig0004829:3270-3289 | None:intergenic | 45.0% | |
| ATGAACCCAACAAGCCAACA+AGG | + | tig0004829:3329-3348 | Msa1341440:intron | 45.0% | |
| !! | CATTCACCTTGTTGGCTTGT+TGG | - | tig0004829:3338-3357 | None:intergenic | 45.0% |
| GAATAAAGGACGAAGGGACT+AGG | - | tig0004829:3414-3433 | None:intergenic | 45.0% | |
| GTGAACTCTTACGAGTCTAC+TGG | + | tig0004829:3694-3713 | Msa1341440:intron | 45.0% | |
| TTGCAACAAAGCTGTTCACC+TGG | + | tig0004829:3811-3830 | Msa1341440:intron | 45.0% | |
| ! | ACGAACACCTTCAGCCTTAT+GGG | - | tig0004829:4072-4091 | None:intergenic | 45.0% |
| AACGAACACCTTCAGCCTTA+TGG | - | tig0004829:4073-4092 | None:intergenic | 45.0% | |
| !! | ATAAGGCTGAAGGTGTTCGT+TGG | + | tig0004829:4072-4091 | Msa1341440:intron | 45.0% |
| ! | AGGTGTTCGTTGGAAGCATA+TGG | + | tig0004829:4082-4101 | Msa1341440:intron | 45.0% |
| CTCCAAGGTGGATGTTTATG+AGG | - | tig0004829:4644-4663 | None:intergenic | 45.0% | |
| CTCATAAACATCCACCTTGG+AGG | + | tig0004829:4642-4661 | Msa1341440:intron | 45.0% | |
| AAATAAAGGGACCTCCAAGG+TGG | - | tig0004829:4656-4675 | None:intergenic | 45.0% | |
| !! | TTGGTTTTCTCCTGTCTTGG+TGG | + | tig0004829:4750-4769 | Msa1341440:intron | 45.0% |
| ! | AAACAAAGCCTAAGTTGGGG+CGG | - | tig0004829:5351-5370 | None:intergenic | 45.0% |
| CGCAAACAAAGCCTAAGTTG+GGG | - | tig0004829:5354-5373 | None:intergenic | 45.0% | |
| CTCGCAAACAAAGCCTAAGT+TGG | - | tig0004829:5356-5375 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | tig0004829:5362-5381 | Msa1341440:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | tig0004829:5363-5382 | Msa1341440:intron | 45.0% |
| ! | TGTATTGGAGGAGGGTTTTG+GGG | - | tig0004829:5574-5593 | None:intergenic | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | tig0004829:5363-5382 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | tig0004829:5362-5381 | None:intergenic | 45.0% |
| ACTCGCAAACAAAGCCTTAG+TGG | + | tig0004829:5735-5754 | Msa1341440:intron | 45.0% | |
| CTCGCAAACAAAGCCTTAGT+GGG | + | tig0004829:5736-5755 | Msa1341440:intron | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | - | tig0004829:5854-5873 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | + | tig0004829:5851-5870 | Msa1341440:intron | 45.0% | |
| ACCAGCAAACACTTGAGATG+GGG | - | tig0004829:6120-6139 | None:intergenic | 45.0% | |
| CACCAGCAAACACTTGAGAT+GGG | - | tig0004829:6121-6140 | None:intergenic | 45.0% | |
| !! | TTAAAATTATTATAGAATAA+AGG | - | tig0004829:3428-3447 | None:intergenic | 5.0% |
| GCAAAACGGAGGTTTGGGAA+TGG | + | tig0004829:2048-2067 | Msa1341440:CDS | 50.0% | |
| TGGGTTGTTTGCGTGGTTTG+TGG | + | tig0004829:2153-2172 | Msa1341440:CDS | 50.0% | |
| CTCCACACTGAGGACATGTT+TGG | - | tig0004829:2794-2813 | None:intergenic | 50.0% | |
| GTGACTTCATTTATGCCGGG+AGG | - | tig0004829:3266-3285 | None:intergenic | 50.0% | |
| GCCGTGACTTCATTTATGCC+GGG | - | tig0004829:3269-3288 | None:intergenic | 50.0% | |
| CTTCAGTCACAGTCACACTG+AGG | - | tig0004829:4566-4585 | None:intergenic | 50.0% | |
| CTCAGTGTGACTGTGACTGA+AGG | + | tig0004829:4564-4583 | Msa1341440:intron | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | tig0004829:5361-5380 | Msa1341440:intron | 50.0% |
| AGGGGAAGGGAAAGGTTTGA+GGG | + | tig0004829:5386-5405 | Msa1341440:intron | 50.0% | |
| !!! | TATTGGAGGAGGGTTTTGGG+GGG | - | tig0004829:5572-5591 | None:intergenic | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+GGG | - | tig0004829:5573-5592 | None:intergenic | 50.0% |
| TAGAGGAAAATGGGAGGGGA+GGG | - | tig0004829:5659-5678 | None:intergenic | 50.0% | |
| ATAGAGGAAAATGGGAGGGG+AGG | - | tig0004829:5660-5679 | None:intergenic | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | - | tig0004829:5701-5720 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | - | tig0004829:5724-5743 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | tig0004829:5361-5380 | None:intergenic | 50.0% |
| AGCCTTAGTGGGATAAGGCT+CGG | + | tig0004829:5747-5766 | Msa1341440:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | tig0004829:5848-5867 | None:intergenic | 50.0% | |
| TTGTGTGTATGGCTGGACAC+AGG | + | tig0004829:6016-6035 | Msa1341440:intron | 50.0% | |
| ACCCCATCTCAAGTGTTTGC+TGG | + | tig0004829:6116-6135 | Msa1341440:CDS | 50.0% | |
| GCACCAGCAAACACTTGAGA+TGG | - | tig0004829:6122-6141 | None:intergenic | 50.0% | |
| ACAACCTTGGCAGCAGAAAC+AGG | - | tig0004829:6165-6184 | None:intergenic | 50.0% | |
| TGCCAAGGTTGTGTTGTGGT+GGG | + | tig0004829:6173-6192 | Msa1341440:CDS | 50.0% | |
| AACCCACCACAACACAACCT+TGG | - | tig0004829:6178-6197 | None:intergenic | 50.0% | |
| !! | AGGTTGTGTTGTGGTGGGTT+AGG | + | tig0004829:6178-6197 | Msa1341440:CDS | 50.0% |
| !! | TTGTGGTGGGTTAGGTCGTT+AGG | + | tig0004829:6186-6205 | Msa1341440:exon | 50.0% |
| GGGTTAGGTCGTTAGGACTT+AGG | + | tig0004829:6193-6212 | Msa1341440:exon | 50.0% | |
| ACATGCTGGCATGCAAGCTC+AGG | + | tig0004829:2390-2409 | Msa1341440:CDS | 55.0% | |
| CATGTCCTCAGTGTGGAGAC+CGG | + | tig0004829:2796-2815 | Msa1341440:intron | 55.0% | |
| GTACTGAGTCTCAACCCTCC+CGG | + | tig0004829:3248-3267 | Msa1341440:intron | 55.0% | |
| TGTTTGCGAGTTTGGAGGGG+AGG | + | tig0004829:5366-5385 | Msa1341440:intron | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+GGG | + | tig0004829:5367-5386 | Msa1341440:intron | 55.0% | |
| TTTGCGAGTTTGGAGGGGAG+GGG | + | tig0004829:5368-5387 | Msa1341440:intron | 55.0% | |
| GAGGGGAAGGGAAAGGTTTG+AGG | + | tig0004829:5385-5404 | Msa1341440:intron | 55.0% | |
| GGGGAAGGGAAAGGTTTGAG+GGG | + | tig0004829:5387-5406 | Msa1341440:intron | 55.0% | |
| GAAGGGAAAGGTTTGAGGGG+TGG | + | tig0004829:5390-5409 | Msa1341440:intron | 55.0% | |
| !!! | GGGTTTTGGGGGGTTTTGGA+GGG | - | tig0004829:5562-5581 | None:intergenic | 55.0% |
| !!! | AGGGTTTTGGGGGGTTTTGG+AGG | - | tig0004829:5563-5582 | None:intergenic | 55.0% |
| !!! | AGGAGGGTTTTGGGGGGTTT+TGG | - | tig0004829:5566-5585 | None:intergenic | 55.0% |
| AAATGGGAGGGGAGGGCTTT+GGG | - | tig0004829:5652-5671 | None:intergenic | 55.0% | |
| AAAATGGGAGGGGAGGGCTT+TGG | - | tig0004829:5653-5672 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | - | tig0004829:5367-5386 | None:intergenic | 55.0% | |
| ! | CACCGAGCCTTATCCCACTA+AGG | - | tig0004829:5752-5771 | None:intergenic | 55.0% |
| CTTAGTGGGATAAGGCTCGG+TGG | + | tig0004829:5750-5769 | Msa1341440:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+CGG | - | tig0004829:5840-5859 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | tig0004829:5840-5859 | Msa1341440:intron | 55.0% | |
| !! | GTAGCCTGTTTCTGCTGCCA+AGG | + | tig0004829:6158-6177 | Msa1341440:CDS | 55.0% |
| CTGCTGCCAAGGTTGTGTTG+TGG | + | tig0004829:6169-6188 | Msa1341440:CDS | 55.0% | |
| CTGCCAAGGTTGTGTTGTGG+TGG | + | tig0004829:6172-6191 | Msa1341440:CDS | 55.0% | |
| ! | CCTAAGTTGGGGCGGCTACA+TGG | - | tig0004829:5343-5362 | None:intergenic | 60.0% |
| CCATGTAGCCGCCCCAACTT+AGG | + | tig0004829:5340-5359 | Msa1341440:intron | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | + | tig0004829:5373-5392 | Msa1341440:intron | 60.0% | |
| AATGGGAGGGGAGGGCTTTG+GGG | - | tig0004829:5651-5670 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | tig0004829:5719-5738 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | - | tig0004829:5720-5739 | None:intergenic | 60.0% | |
| GTGTAGCCGACCCCACTTAG+TGG | + | tig0004829:5839-5858 | Msa1341440:intron | 60.0% | |
| ! | GTGTTTGCTGGTGCCCTGCT+TGG | + | tig0004829:6128-6147 | Msa1341440:CDS | 60.0% |
| CCTCTCCGGTCTCCACACTG+AGG | - | tig0004829:2804-2823 | None:intergenic | 65.0% | |
| CCTCAGTGTGGAGACCGGAG+AGG | + | tig0004829:2801-2820 | Msa1341440:intron | 65.0% | |
| CGAGTTTGGAGGGGAGGGGA+AGG | + | tig0004829:5372-5391 | Msa1341440:intron | 65.0% | |
| TGGAGGGGAGGGGAAGGGAA+AGG | + | tig0004829:5378-5397 | Msa1341440:intron | 65.0% | |
| ! | ATGGGAGGGGAGGGCTTTGG+GGG | - | tig0004829:5650-5669 | None:intergenic | 65.0% |
| GGGAAGGGAGGGGAAGGCTT+GGG | - | tig0004829:5709-5728 | None:intergenic | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | - | tig0004829:5715-5734 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | - | tig0004829:5721-5740 | None:intergenic | 65.0% | |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | - | tig0004829:5649-5668 | None:intergenic | 70.0% |
| GGGGAAGGGAGGGGAAGGCT+TGG | - | tig0004829:5710-5729 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004829 | gene | 1699 | 6396 | 1699 | ID=Msa1341440;Name=Msa1341440 |
| tig0004829 | mRNA | 1699 | 6396 | 1699 | ID=Msa1341440-mRNA-1;Parent=Msa1341440;Name=Msa1341440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|1|1|1|1|2|197|259 |
| tig0004829 | exon | 1699 | 2411 | 1699 | ID=Msa1341440-mRNA-1:exon:3205;Parent=Msa1341440-mRNA-1 |
| tig0004829 | exon | 6038 | 6396 | 6038 | ID=Msa1341440-mRNA-1:exon:3206;Parent=Msa1341440-mRNA-1 |
| tig0004829 | five_prime_UTR | 1699 | 1793 | 1699 | ID=Msa1341440-mRNA-1:five_prime_utr;Parent=Msa1341440-mRNA-1 |
| tig0004829 | CDS | 1794 | 2411 | 1794 | ID=Msa1341440-mRNA-1:cds;Parent=Msa1341440-mRNA-1 |
| tig0004829 | CDS | 6038 | 6199 | 6038 | ID=Msa1341440-mRNA-1:cds;Parent=Msa1341440-mRNA-1 |
| tig0004829 | three_prime_UTR | 6200 | 6396 | 6200 | ID=Msa1341440-mRNA-1:three_prime_utr;Parent=Msa1341440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
