AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045660 MtrunA17_Chr1g0212851 99.109 449 4 0 1 449 1 449 0.0 915
Msa0045660 MtrunA17_Chr8g0369371 59.916 237 83 4 21 253 2 230 6.95e-89 270
Msa0045660 MtrunA17_Chr5g0418911 37.234 376 192 7 83 447 24 366 2.18e-73 235
Msa0045660 MtrunA17_Chr8g0369381 43.820 178 81 1 272 449 1 159 5.42e-42 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045660 AT1G80480.1 78.663 389 76 2 61 449 63 444 0.0 575
Msa0045660 AT1G15730.1 71.635 416 111 3 36 449 38 448 0.0 573
Msa0045660 AT1G26520.1 37.602 367 185 6 89 447 42 372 4.41e-76 242

Find 130 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGCTTCAAGCTTATT+TGG 0.162746 1_1:+77619824 Msa0045660:CDS
CTTCTTTGGTCCAGCGGATT+AGG 0.207261 1_1:+77622798 Msa0045660:CDS
ATGGTCAAATTTGCCTTTCT+TGG 0.221608 1_1:-77620491 None:intergenic
ATACTCCGTCCTCTTTAAAT+TGG 0.236187 1_1:-77622945 None:intergenic
GAATGAAAGATTTGTCTTTC+AGG 0.236233 1_1:+77624306 Msa0045660:CDS
GTGAACTTGGATTATGTTCT+TGG 0.237961 1_1:+77622974 Msa0045660:CDS
TCTGGCTGCCACAACCTTTC+CGG 0.245017 1_1:-77624532 None:intergenic
CGAATCAGACATCACTTCTT+TGG 0.265430 1_1:+77622784 Msa0045660:CDS
TTGTTTGTCCTTGGCTCATC+TGG 0.268152 1_1:-77624550 None:intergenic
GCCTCATTGACCACACCTTT+TGG 0.295052 1_1:-77620762 None:intergenic
CTACGGAAGATTGTAGAAAT+TGG 0.299599 1_1:-77619941 None:intergenic
AATAGTATCCTCAGCATAAA+AGG 0.305064 1_1:-77620661 None:intergenic
TGATCGAATAATCGTAAATA+AGG 0.306250 1_1:+77620806 Msa0045660:CDS
AGAAGAGTGGTGAAGGGTTT+GGG 0.309735 1_1:-77619863 None:intergenic
GAACTTGAATGCTGAGGAAT+TGG 0.310817 1_1:+77624591 Msa0045660:CDS
AATTTAAAGAGGACGGAGTA+TGG 0.326999 1_1:+77622947 Msa0045660:CDS
AAGAAGAGTGGTGAAGGGTT+TGG 0.330035 1_1:-77619864 None:intergenic
TGGCATTGGAGGCTTTGATT+TGG 0.346009 1_1:+77622994 Msa0045660:CDS
GCTAAACCTTGTTGTTTACT+TGG 0.358930 1_1:+77619773 Msa0045660:five_prime_UTR
TTCTTTGGTCCAGCGGATTA+GGG 0.359042 1_1:+77622799 Msa0045660:CDS
GCATAAAAGGTCTGGATTAT+CGG 0.359801 1_1:-77620648 None:intergenic
TAATACAGGTTTGGCGAATC+CGG 0.361283 1_1:+77620623 Msa0045660:intron
GTGGCAGGAATGCGGTTATC+AGG 0.367337 1_1:-77620058 None:intergenic
GTCACTACGTTCCATCAATA+AGG 0.373389 1_1:-77624242 None:intergenic
TTGGATTATGTTCTTGGCAT+TGG 0.395925 1_1:+77622980 Msa0045660:CDS
TTTGGTGAGATTGATATTGA+TGG 0.412472 1_1:+77620352 Msa0045660:CDS
AGATGAAGGTATTCTAGAAA+TGG 0.416613 1_1:-77624771 None:intergenic
AGAGGCGAGTGAGTTTGTTA+TGG 0.423350 1_1:-77619970 None:intergenic
TTCACTATTCATATAGTAAG+TGG 0.425610 1_1:-77624739 None:intergenic
ATACCTTCATCTTTCAATGA+AGG 0.428015 1_1:+77624782 Msa0045660:three_prime_UTR
GAAATTGGAGATGAGTTTAA+CGG 0.433464 1_1:-77619926 None:intergenic
CATGGTCATGGTCATGGCTA+TGG 0.434201 1_1:-77623541 None:intergenic
GTGGCTTGGTACCTTATTGA+TGG 0.439152 1_1:+77624231 Msa0045660:CDS
AAATGATGATGATACCTTGC+CGG 0.444794 1_1:-77620104 None:intergenic
GGAGTTCATGACATATTTCA+AGG 0.445771 1_1:+77624505 Msa0045660:CDS
AACGTAGTGACGACATTTAT+AGG 0.447587 1_1:+77624254 Msa0045660:CDS
TATCCTCAGCATAAAAGGTC+TGG 0.451814 1_1:-77620656 None:intergenic
CCGTCCTCTTTAAATTGGCC+AGG 0.458430 1_1:-77622940 None:intergenic
TGTGGTCATGTGAATCTTCA+TGG 0.466615 1_1:-77623595 None:intergenic
GAATGCTGAGGAATTGGAAA+AGG 0.468936 1_1:+77624597 Msa0045660:CDS
GATCATGATGATGGTGTTCA+TGG 0.472248 1_1:-77623559 None:intergenic
AAAGGTCTTCTATCTGTTCA+AGG 0.474112 1_1:+77624280 Msa0045660:CDS
TTGTCTTTGCTGTACTGTGA+GGG 0.479297 1_1:+77620432 Msa0045660:CDS
CATATTGTTATTGAGACTAC+TGG 0.484719 1_1:+77620511 Msa0045660:CDS
TTGCACCAGACTGATCTTGT+TGG 0.485087 1_1:+77622761 Msa0045660:intron
CAGTAGTCTCAATAACAATA+TGG 0.488237 1_1:-77620510 None:intergenic
ATGGTCATGGTCATGGCTAT+GGG 0.492078 1_1:-77623540 None:intergenic
CTATAGGCTAACATGTGGCT+TGG 0.493336 1_1:+77624217 Msa0045660:intron
GATTATGTTCTTGGCATTGG+AGG 0.493460 1_1:+77622983 Msa0045660:CDS
GAATTAGTCACTTCCAAGAA+AGG 0.495832 1_1:+77620478 Msa0045660:CDS
GAAACACGTGTGAAATCCAT+TGG 0.495998 1_1:-77624888 None:intergenic
ACCGAGAAAACCGGTGATGA+TGG 0.498944 1_1:-77620080 None:intergenic
GAACCTTCATTGAAAGATGA+AGG 0.501399 1_1:-77624785 None:intergenic
TTTGGTATTTCAGTTCATGA+TGG 0.501956 1_1:-77624862 None:intergenic
TTCTTAGTATCACAGCAAAC+AGG 0.504205 1_1:-77624629 None:intergenic
GGAGTATGGAAAGGTGAACT+TGG 0.507746 1_1:+77622961 Msa0045660:CDS
AATTGCGGTTATTGAAAATG+AGG 0.508358 1_1:+77620241 Msa0045660:CDS
AATGCTGAGGAATTGGAAAA+GGG 0.512342 1_1:+77624598 Msa0045660:CDS
GTTGGATGGTGTTGTCACTT+TGG 0.513457 1_1:+77620698 Msa0045660:CDS
TCACTATTCATATAGTAAGT+GGG 0.516115 1_1:-77624738 None:intergenic
GTTTGTTATGGTTGTTACTA+CGG 0.516237 1_1:-77619958 None:intergenic
TTTAATGAAGTCAAGTTGGA+TGG 0.519334 1_1:+77620684 Msa0045660:CDS
TCGGAGTCGTCGGTGGTTTG+AGG 0.520426 1_1:-77620013 None:intergenic
TACATTCACTAGTTAGCCAC+GGG 0.521062 1_1:-77619714 None:intergenic
TGACATATTTCAAGGTTCAC+CGG 0.523489 1_1:+77624513 Msa0045660:CDS
GGTGTTCATGGTCATGGTCA+TGG 0.528471 1_1:-77623547 None:intergenic
GGAGACGTCGTCGGAGTCGT+CGG 0.528650 1_1:-77620023 None:intergenic
CTTGCCGGAACCGAGAAAAC+CGG 0.529351 1_1:-77620089 None:intergenic
AATCTTCATGGTGATGGTGG+TGG 0.536012 1_1:-77623583 None:intergenic
TATTGATGGTTCTTTAGTTG+CGG 0.539178 1_1:+77620366 Msa0045660:CDS
CTTGACGAGGTTAAGCCAAA+AGG 0.540274 1_1:+77620747 Msa0045660:CDS
ATTCCTGCCACCATCATCAC+CGG 0.540312 1_1:+77620070 Msa0045660:CDS
AAACCGGTGATGATGGTGGC+AGG 0.542945 1_1:-77620073 None:intergenic
CATATTCTCACAGCGGAGCA+TGG 0.544248 1_1:+77620212 Msa0045660:CDS
ATGCTCACTGATGAAACGCC+AGG 0.549059 1_1:-77624008 None:intergenic
TTGGTTGATGCGAAACATGC+TGG 0.549484 1_1:+77620717 Msa0045660:CDS
GCGGTTATCAGGTGGAATAA+CGG 0.551353 1_1:-77620047 None:intergenic
CATGATCATAGTCACGATCC+TGG 0.552341 1_1:+77623990 Msa0045660:CDS
GGTGGTGGTGATCATGATGA+TGG 0.553558 1_1:-77623568 None:intergenic
GAGAGCGCTGTTAATGATGA+AGG 0.554591 1_1:+77623497 Msa0045660:CDS
ATTCCAGAAAATAAACAGCC+TGG 0.556534 1_1:+77622922 Msa0045660:intron
AAGGTTCACCGGAAAGGTTG+TGG 0.556980 1_1:+77624524 Msa0045660:CDS
GACGACATTTATAGGATGAA+AGG 0.558665 1_1:+77624262 Msa0045660:CDS
TATTTCAAGGTTCACCGGAA+AGG 0.560823 1_1:+77624518 Msa0045660:CDS
GGGTTTGGGTTTGCGATAAG+CGG 0.562113 1_1:-77619849 None:intergenic
CATGTGAATCTTCATGGTGA+TGG 0.566710 1_1:-77623589 None:intergenic
GATATTATGTTGTTGAACAA+TGG 0.568349 1_1:+77620409 Msa0045660:CDS
AGACACTAACCCTAATCCGC+TGG 0.576738 1_1:-77622808 None:intergenic
AGCAAGTACTAACCTTCTCA+AGG 0.584526 1_1:-77624052 None:intergenic
AAAGAGGACGGAGTATGGAA+AGG 0.586024 1_1:+77622952 Msa0045660:CDS
GTGAATCTTCATGGTGATGG+TGG 0.586196 1_1:-77623586 None:intergenic
TTGGAGGCTTTGATTTGGAG+AGG 0.586416 1_1:+77622999 Msa0045660:CDS
GGTGGAAAGAAGAGTGGTGA+AGG 0.586615 1_1:-77619870 None:intergenic
TGCTGGTTTGCATCTTGACG+AGG 0.587527 1_1:+77620734 Msa0045660:CDS
GGTTTGAGGCGGAGATGAGG+TGG 0.587638 1_1:-77619999 None:intergenic
GGTGTTGGTGGAAAGAAGAG+TGG 0.592017 1_1:-77619876 None:intergenic
CAACATAATATCTTCAGCAC+CGG 0.592357 1_1:-77620398 None:intergenic
TTCAGTGAAACAAAACGCCA+TGG 0.593485 1_1:-77619804 None:intergenic
ACAGCCTGGCCAATTTAAAG+AGG 0.594420 1_1:+77622936 Msa0045660:CDS
GCCAAAAGGTGTGGTCAATG+AGG 0.599909 1_1:+77620761 Msa0045660:CDS
AAATTTAGGTACCATGCTTG+TGG 0.601243 1_1:-77623613 None:intergenic
GTTGTCTTTGCTGTACTGTG+AGG 0.604741 1_1:+77620431 Msa0045660:CDS
CTACATTCACTAGTTAGCCA+CGG 0.606653 1_1:-77619715 None:intergenic
GACGTCGTCGGAGTCGTCGG+TGG 0.608943 1_1:-77620020 None:intergenic
GGTGGTTTGAGGCGGAGATG+AGG 0.610253 1_1:-77620002 None:intergenic
GATGATGGTGTTCATGGTCA+TGG 0.610283 1_1:-77623553 None:intergenic
AGGGAAGAACTTGAATGCTG+AGG 0.611753 1_1:+77624585 Msa0045660:CDS
GTGGAAAGAAGAGTGGTGAA+GGG 0.612512 1_1:-77619869 None:intergenic
ACATCACTTCTTTGGTCCAG+CGG 0.614631 1_1:+77622792 Msa0045660:CDS
TGTCTTTGCTGTACTGTGAG+GGG 0.617492 1_1:+77620433 Msa0045660:CDS
AAGGTCTGGATTATCGGCGC+CGG 0.617720 1_1:-77620642 None:intergenic
GCAGGAATGCGGTTATCAGG+TGG 0.618572 1_1:-77620055 None:intergenic
CCTGGCCAATTTAAAGAGGA+CGG 0.624870 1_1:+77622940 Msa0045660:CDS
TCAGTGAGCATAGTTTGCGA+AGG 0.626638 1_1:+77624020 Msa0045660:CDS
GAGTCGTCGGTGGTTTGAGG+CGG 0.627298 1_1:-77620010 None:intergenic
AGGAAACTTAGACCTTGAGA+AGG 0.627667 1_1:+77624040 Msa0045660:CDS
GATTCACATGACCACAAGCA+TGG 0.628690 1_1:+77623602 Msa0045660:CDS
TGTGGCAGCCAGATGAGCCA+AGG 0.631087 1_1:+77624542 Msa0045660:CDS
GAGATGAGGTGGATGATGAG+AGG 0.634300 1_1:-77619988 None:intergenic
CGAGGTTAAGCCAAAAGGTG+TGG 0.651456 1_1:+77620752 Msa0045660:CDS
GAGAAAACCGGTGATGATGG+TGG 0.657464 1_1:-77620077 None:intergenic
ATGCTGAGGAATTGGAAAAG+GGG 0.668894 1_1:+77624599 Msa0045660:CDS
GTTATCAGGTGGAATAACGG+TGG 0.683146 1_1:-77620044 None:intergenic
TGATGATGGTGGCAGGAATG+CGG 0.686059 1_1:-77620066 None:intergenic
AATAACGGTGGAGACGTCGT+CGG 0.694029 1_1:-77620032 None:intergenic
GGAGCATGGAAAACGAATTG+CGG 0.698183 1_1:+77620226 Msa0045660:CDS
ATTCAGATATCATTCTAACA+AGG 0.703033 1_1:-77620459 None:intergenic
AATGTTCCAAGTAAACAACA+AGG 0.718876 1_1:-77619779 None:intergenic
TCTGAATCATATTCTCACAG+CGG 0.771767 1_1:+77620205 Msa0045660:CDS
ACATTCACTAGTTAGCCACG+GGG 0.817894 1_1:-77619713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATAAT+AGG - chr1_1:77623738-77623757 None:intergenic 0.0%
!!! AACTTATTTTTATTTAAGAA+TGG + chr1_1:77621355-77621374 Msa0045660:intron 10.0%
!!! TCTTAAGTTTTTTTTTTTTT+TGG + chr1_1:77621651-77621670 Msa0045660:intron 10.0%
!!! AAGTAAAATAAGATATTTTT+TGG - chr1_1:77622006-77622025 None:intergenic 10.0%
!!! ATCTAATTTTATTATTTGAA+TGG + chr1_1:77623806-77623825 Msa0045660:intron 10.0%
!!! TTTTTCATTGATGAAAAATA+TGG + chr1_1:77620870-77620889 Msa0045660:intron 15.0%
!! AAACTTAAGATTTAAATGTT+GGG - chr1_1:77621641-77621660 None:intergenic 15.0%
!! AAAACTTAAGATTTAAATGT+TGG - chr1_1:77621642-77621661 None:intergenic 15.0%
!!! ATATATTTTATGAAACTGTA+TGG + chr1_1:77622479-77622498 Msa0045660:intron 15.0%
!!! TTTTTCTTAAACAATTGAAA+AGG - chr1_1:77623048-77623067 None:intergenic 15.0%
!!! TTTTCAATTGTTTAAGAAAA+AGG + chr1_1:77623047-77623066 Msa0045660:intron 15.0%
!!! TAATTTTATTATTTGAATGG+TGG + chr1_1:77623809-77623828 Msa0045660:intron 15.0%
!!! ATTAATTTGTCTTATTCATT+TGG + chr1_1:77624099-77624118 Msa0045660:intron 15.0%
!! AGCATTAACATAAAAAATAA+AGG - chr1_1:77624140-77624159 None:intergenic 15.0%
!!! ATGAATAGTTCTTTTGATTT+TGG - chr1_1:77619900-77619919 None:intergenic 20.0%
!! TTGAAATGATTGAATTGAAA+TGG - chr1_1:77620145-77620164 None:intergenic 20.0%
!! TAAAATTGAACTGCTTATTA+GGG + chr1_1:77620567-77620586 Msa0045660:intron 20.0%
!!! TATTTTTAATGAAGTCAAGT+TGG + chr1_1:77620680-77620699 Msa0045660:CDS 20.0%
!! GCTAATTTATACTTATTACA+GGG + chr1_1:77620837-77620856 Msa0045660:intron 20.0%
!! TAACTAAATAATGTACAGTA+TGG + chr1_1:77620936-77620955 Msa0045660:intron 20.0%
!! ATAATTCAAAATTCGCTATA+TGG - chr1_1:77620980-77620999 None:intergenic 20.0%
!! AAAAATTCTACATCAAGTTA+TGG + chr1_1:77621003-77621022 Msa0045660:intron 20.0%
!! TGTATGAAAGTTTCAAATAA+CGG - chr1_1:77621496-77621515 None:intergenic 20.0%
!! TAAAAGTTTATAGATGTTCA+TGG - chr1_1:77622031-77622050 None:intergenic 20.0%
!!! TGAACATCTATAAACTTTTA+AGG + chr1_1:77622031-77622050 Msa0045660:intron 20.0%
!! TCTCAGTTAAAATAAGTTTA+TGG - chr1_1:77622076-77622095 None:intergenic 20.0%
!!! TAAATCTTAAGGGAATTTTT+TGG + chr1_1:77622216-77622235 Msa0045660:intron 20.0%
!!! GAATTTTCAATTTCATTATG+AGG + chr1_1:77622238-77622257 Msa0045660:intron 20.0%
!! TAAAAGCTTATAGATGTTAA+TGG - chr1_1:77622640-77622659 None:intergenic 20.0%
!!! TTAACATCTATAAGCTTTTA+AGG + chr1_1:77622640-77622659 Msa0045660:intron 20.0%
!!! AGCCATAAATTTATTTTAAC+TGG + chr1_1:77622680-77622699 Msa0045660:intron 20.0%
!!! GCCATAAATTTATTTTAACT+GGG + chr1_1:77622681-77622700 Msa0045660:intron 20.0%
!! TCCCAGTTAAAATAAATTTA+TGG - chr1_1:77622685-77622704 None:intergenic 20.0%
!!! CAAAAGTTCTAAAAGTTATA+TGG - chr1_1:77623210-77623229 None:intergenic 20.0%
!!! CATATAACTTTTAGAACTTT+TGG + chr1_1:77623208-77623227 Msa0045660:intron 20.0%
!! TGACAAATCTTATCAAAAAT+AGG - chr1_1:77623703-77623722 None:intergenic 20.0%
!! TTTCATAAGGACAAATTATA+AGG + chr1_1:77623876-77623895 Msa0045660:intron 20.0%
!!! AACTAACATACTTTTTCTAT+AGG + chr1_1:77624201-77624220 Msa0045660:intron 20.0%
!! TGAAAACAACAACAATAAAT+AGG - chr1_1:77624353-77624372 None:intergenic 20.0%
!!! ACAAACAAAATTGTTTTCAT+AGG + chr1_1:77624565-77624584 Msa0045660:CDS 20.0%
!!! CAAACAAAATTGTTTTCATA+GGG + chr1_1:77624566-77624585 Msa0045660:CDS 20.0%
!! TCAAAAAGAATAAAGGATTA+AGG - chr1_1:77624669-77624688 None:intergenic 20.0%
!! TGAACAATCAAAAAGAATAA+AGG - chr1_1:77624676-77624695 None:intergenic 20.0%
!! TAACTAGTGAATGTAGTTTT+TGG + chr1_1:77619722-77619741 Msa0045660:five_prime_UTR 25.0%
! TGCATATGATTATTGTAGTT+TGG + chr1_1:77620334-77620353 Msa0045660:intron 25.0%
! GATATTATGTTGTTGAACAA+TGG + chr1_1:77620409-77620428 Msa0045660:CDS 25.0%
! ATTCAGATATCATTCTAACA+AGG - chr1_1:77620462-77620481 None:intergenic 25.0%
! GTAAAATTGAACTGCTTATT+AGG + chr1_1:77620566-77620585 Msa0045660:intron 25.0%
! TTGACTGTTTGTATTAATAC+AGG + chr1_1:77620609-77620628 Msa0045660:intron 25.0%
! TGTTTGTATTAATACAGGTT+TGG + chr1_1:77620614-77620633 Msa0045660:intron 25.0%
! TGATCGAATAATCGTAAATA+AGG + chr1_1:77620806-77620825 Msa0045660:CDS 25.0%
!! AATCGTAAATAAGGTATTCA+TGG + chr1_1:77620815-77620834 Msa0045660:intron 25.0%
! GGCTAATTTATACTTATTAC+AGG + chr1_1:77620836-77620855 Msa0045660:intron 25.0%
! AATTTATACTTATTACAGGG+TGG + chr1_1:77620840-77620859 Msa0045660:intron 25.0%
! AATAATGTACAGTATGGTTA+TGG + chr1_1:77620942-77620961 Msa0045660:intron 25.0%
! ATCTAGTACAATCAAAATGT+TGG + chr1_1:77621156-77621175 Msa0045660:intron 25.0%
! TCTAGTACAATCAAAATGTT+GGG + chr1_1:77621157-77621176 Msa0045660:intron 25.0%
!!! TTTAAGAATGGCTTTTAGTT+TGG + chr1_1:77621367-77621386 Msa0045660:intron 25.0%
!!! TTAAGAATGGCTTTTAGTTT+GGG + chr1_1:77621368-77621387 Msa0045660:intron 25.0%
!! TTAGTTTGGGTTATAAAACA+TGG + chr1_1:77621381-77621400 Msa0045660:intron 25.0%
! GAAAATAGTGTATCATTCTT+AGG + chr1_1:77621412-77621431 Msa0045660:intron 25.0%
!! GAAAATGACAGTATTGTTTT+GGG + chr1_1:77621576-77621595 Msa0045660:intron 25.0%
!!! TATTGTTTTGGGATTTACAA+TGG + chr1_1:77621587-77621606 Msa0045660:intron 25.0%
! GAATTTCCTATCTAATTATG+AGG + chr1_1:77621673-77621692 Msa0045660:intron 25.0%
! AAATTCTCAAGAAATGCTTA+TGG + chr1_1:77621886-77621905 Msa0045660:intron 25.0%
! ACAGTGAAGATTTAAATGTT+GGG - chr1_1:77622139-77622158 None:intergenic 25.0%
! AACAGTGAAGATTTAAATGT+TGG - chr1_1:77622140-77622159 None:intergenic 25.0%
!! CATTTAAATCTTCACTGTTT+TGG + chr1_1:77622141-77622160 Msa0045660:intron 25.0%
!! ATTTAAATGTTGGGGTTTTA+AGG - chr1_1:77622201-77622220 None:intergenic 25.0%
! TCCCTTAAGATTTAAATGTT+GGG - chr1_1:77622210-77622229 None:intergenic 25.0%
! TTCCCTTAAGATTTAAATGT+TGG - chr1_1:77622211-77622230 None:intergenic 25.0%
! TATTGAACTGAAATATGTAG+CGG + chr1_1:77622417-77622436 Msa0045660:intron 25.0%
! AGTTAGACATTAATACAAAG+TGG + chr1_1:77622715-77622734 Msa0045660:intron 25.0%
! TCTTAAACAATTGAAAAGGA+AGG - chr1_1:77623044-77623063 None:intergenic 25.0%
! AATGTAAGTTTACTTCTTCT+CGG + chr1_1:77623078-77623097 Msa0045660:intron 25.0%
!!! ATGAGAATGATTTTAGCATA+TGG - chr1_1:77623181-77623200 None:intergenic 25.0%
!!! AGTTCTAAAAGTTATATGGT+AGG - chr1_1:77623206-77623225 None:intergenic 25.0%
! ACTCAACAATTAGATACATT+AGG - chr1_1:77623246-77623265 None:intergenic 25.0%
! TGGGTATTTAGATATTTCTT+CGG + chr1_1:77623396-77623415 Msa0045660:intron 25.0%
!! ATGTCTTCTTGATCTTTTTA+AGG + chr1_1:77623471-77623490 Msa0045660:intron 25.0%
! AAACAAGAAAGGATTGAATT+GGG - chr1_1:77623859-77623878 None:intergenic 25.0%
!!! AAAACAATTTTGTTTGTCCT+TGG - chr1_1:77624562-77624581 None:intergenic 25.0%
! TCACTATTCATATAGTAAGT+GGG - chr1_1:77624741-77624760 None:intergenic 25.0%
! TTCACTATTCATATAGTAAG+TGG - chr1_1:77624742-77624761 None:intergenic 25.0%
AATGTTCCAAGTAAACAACA+AGG - chr1_1:77619782-77619801 None:intergenic 30.0%
! TTTACTTGGAACATTTTCCA+TGG + chr1_1:77619787-77619806 Msa0045660:exon 30.0%
!!! AGTTCTTTTGATTTTGGTGT+TGG - chr1_1:77619894-77619913 None:intergenic 30.0%
GAAATTGGAGATGAGTTTAA+CGG - chr1_1:77619929-77619948 None:intergenic 30.0%
!! GTTTGTTATGGTTGTTACTA+CGG - chr1_1:77619961-77619980 None:intergenic 30.0%
AATTGCGGTTATTGAAAATG+AGG + chr1_1:77620241-77620260 Msa0045660:CDS 30.0%
TTTGGTGAGATTGATATTGA+TGG + chr1_1:77620352-77620371 Msa0045660:CDS 30.0%
! TATTGATGGTTCTTTAGTTG+CGG + chr1_1:77620366-77620385 Msa0045660:CDS 30.0%
CAGTAGTCTCAATAACAATA+TGG - chr1_1:77620513-77620532 None:intergenic 30.0%
! CATATTGTTATTGAGACTAC+TGG + chr1_1:77620511-77620530 Msa0045660:CDS 30.0%
AATAGTATCCTCAGCATAAA+AGG - chr1_1:77620664-77620683 None:intergenic 30.0%
!! TTTAATGAAGTCAAGTTGGA+TGG + chr1_1:77620684-77620703 Msa0045660:CDS 30.0%
! AATATGGATTGTCGAGAAAA+TGG + chr1_1:77620886-77620905 Msa0045660:intron 30.0%
! ATATGGATTGTCGAGAAAAT+GGG + chr1_1:77620887-77620906 Msa0045660:intron 30.0%
TTCAAAATTCGCTATATGGA+AGG - chr1_1:77620976-77620995 None:intergenic 30.0%
! GGAAAATGACAGTATTGTTT+TGG + chr1_1:77621575-77621594 Msa0045660:intron 30.0%
GATTTAAATGTTGGGCTTTA+TGG - chr1_1:77621633-77621652 None:intergenic 30.0%
TGTGCAAGATATAGATTCTA+TGG + chr1_1:77621850-77621869 Msa0045660:intron 30.0%
AAAAAACATCTCATGTGAAG+TGG + chr1_1:77621965-77621984 Msa0045660:intron 30.0%
ATTTAAATGTTGGGGATTTG+AGG - chr1_1:77622130-77622149 None:intergenic 30.0%
CAGTGAAGATTTAAATGTTG+GGG - chr1_1:77622138-77622157 None:intergenic 30.0%
ACCCCAACATTTAAATCTTA+AGG + chr1_1:77622205-77622224 Msa0045660:intron 30.0%
CCCTTAAGATTTAAATGTTG+GGG - chr1_1:77622209-77622228 None:intergenic 30.0%
CCCCAACATTTAAATCTTAA+GGG + chr1_1:77622206-77622225 Msa0045660:intron 30.0%
ATTAAATGCGTAGAAGAACT+AGG - chr1_1:77622387-77622406 None:intergenic 30.0%
ATTGAACTGAAATATGTAGC+GGG + chr1_1:77622418-77622437 Msa0045660:intron 30.0%
GAATTCTCAAGAAACACTTA+TGG + chr1_1:77622505-77622524 Msa0045660:intron 30.0%
GGAAGGAAACAAGAAAAAAA+AGG - chr1_1:77623027-77623046 None:intergenic 30.0%
AATAACTCGAGTATATGTAC+AGG - chr1_1:77623142-77623161 None:intergenic 30.0%
ATGTTTAGTCATAACCTCAT+GGG + chr1_1:77623377-77623396 Msa0045660:intron 30.0%
GAAATATCTAAATACCCATG+AGG - chr1_1:77623394-77623413 None:intergenic 30.0%
TCAACACACAAGACAAATTT+AGG - chr1_1:77623630-77623649 None:intergenic 30.0%
AGCAAATAGGTAAAAACTGT+TGG - chr1_1:77623835-77623854 None:intergenic 30.0%
GAAACAAGAAAGGATTGAAT+TGG - chr1_1:77623860-77623879 None:intergenic 30.0%
! CAATCCTTTCTTGTTTCATA+AGG + chr1_1:77623863-77623882 Msa0045660:intron 30.0%
TTGTCCTTATGAAACAAGAA+AGG - chr1_1:77623870-77623889 None:intergenic 30.0%
!! TGTAGTTTTGCTATGAAGTA+AGG + chr1_1:77623931-77623950 Msa0045660:intron 30.0%
!! GTAGTTTTGCTATGAAGTAA+GGG + chr1_1:77623932-77623951 Msa0045660:intron 30.0%
TCTTATTCATTTGGATGCTT+GGG + chr1_1:77624108-77624127 Msa0045660:intron 30.0%
! TTTTTCTATAGGCTAACATG+TGG + chr1_1:77624212-77624231 Msa0045660:intron 30.0%
GAATGAAAGATTTGTCTTTC+AGG + chr1_1:77624306-77624325 Msa0045660:CDS 30.0%
AGAAAAAAGCCATGCTTTAT+TGG - chr1_1:77624478-77624497 None:intergenic 30.0%
!! AGATGAAGGTATTCTAGAAA+TGG - chr1_1:77624774-77624793 None:intergenic 30.0%
ATACCTTCATCTTTCAATGA+AGG + chr1_1:77624782-77624801 Msa0045660:three_prime_UTR 30.0%
! TTTATGCAGTCACGATTTTA+GGG - chr1_1:77624819-77624838 None:intergenic 30.0%
! ATTTATGCAGTCACGATTTT+AGG - chr1_1:77624820-77624839 None:intergenic 30.0%
TTTGGTATTTCAGTTCATGA+TGG - chr1_1:77624865-77624884 None:intergenic 30.0%
CTGAAATACCAAAAATCCAA+TGG + chr1_1:77624872-77624891 Msa0045660:three_prime_UTR 30.0%
! TGTGAAATCCATTGGATTTT+TGG - chr1_1:77624883-77624902 None:intergenic 30.0%
!! GCTAAACCTTGTTGTTTACT+TGG + chr1_1:77619773-77619792 Msa0045660:five_prime_UTR 35.0%
! GAACTTGCTTCAAGCTTATT+TGG + chr1_1:77619824-77619843 Msa0045660:CDS 35.0%
!!! TCTTTTGATTTTGGTGTTGG+TGG - chr1_1:77619891-77619910 None:intergenic 35.0%
CTACGGAAGATTGTAGAAAT+TGG - chr1_1:77619944-77619963 None:intergenic 35.0%
! AAATGATGATGATACCTTGC+CGG - chr1_1:77620107-77620126 None:intergenic 35.0%
TCTGAATCATATTCTCACAG+CGG + chr1_1:77620205-77620224 Msa0045660:CDS 35.0%
CAACATAATATCTTCAGCAC+CGG - chr1_1:77620401-77620420 None:intergenic 35.0%
GAATTAGTCACTTCCAAGAA+AGG + chr1_1:77620478-77620497 Msa0045660:CDS 35.0%
ATGGTCAAATTTGCCTTTCT+TGG - chr1_1:77620494-77620513 None:intergenic 35.0%
GCATAAAAGGTCTGGATTAT+CGG - chr1_1:77620651-77620670 None:intergenic 35.0%
! AATACTTTCTTTGTGCCGTT+TGG + chr1_1:77621035-77621054 Msa0045660:intron 35.0%
TTGCGAGAAGTTAATCCAAA+CGG - chr1_1:77621053-77621072 None:intergenic 35.0%
TAACTTCTCGCAAATCACTT+CGG + chr1_1:77621060-77621079 Msa0045660:intron 35.0%
!! ACTTCGGTGTTGTTAAATAG+CGG + chr1_1:77621076-77621095 Msa0045660:intron 35.0%
TTGTACTAGATAGCATATCG+CGG - chr1_1:77621147-77621166 None:intergenic 35.0%
TTGCGAATAGCAGAAAACAA+CGG - chr1_1:77621237-77621256 None:intergenic 35.0%
TGACAACACTGAAACACTTA+TGG + chr1_1:77621258-77621277 Msa0045660:intron 35.0%
! TATCCCGTTATGGAATTTTG+GGG - chr1_1:77621464-77621483 None:intergenic 35.0%
! CTATCCCGTTATGGAATTTT+GGG - chr1_1:77621465-77621484 None:intergenic 35.0%
! TAAATGTTGGGCTTTATGGT+TGG - chr1_1:77621629-77621648 None:intergenic 35.0%
GACTACACTATATTGCAGTA+TGG + chr1_1:77621740-77621759 Msa0045660:intron 35.0%
ATAGATTCTATGGAACTGTC+TGG + chr1_1:77621860-77621879 Msa0045660:intron 35.0%
AGTTTATGGCTATTACTTGC+AGG - chr1_1:77622062-77622081 None:intergenic 35.0%
ATTCCAGAAAATAAACAGCC+TGG + chr1_1:77622922-77622941 Msa0045660:intron 35.0%
ATACTCCGTCCTCTTTAAAT+TGG - chr1_1:77622948-77622967 None:intergenic 35.0%
AATTTAAAGAGGACGGAGTA+TGG + chr1_1:77622947-77622966 Msa0045660:CDS 35.0%
GTGAACTTGGATTATGTTCT+TGG + chr1_1:77622974-77622993 Msa0045660:CDS 35.0%
TTGGATTATGTTCTTGGCAT+TGG + chr1_1:77622980-77622999 Msa0045660:CDS 35.0%
!! GAAAAATGTGAGTGCTACTT+TGG - chr1_1:77623327-77623346 None:intergenic 35.0%
CTAAACATGACAACAAAGCA+AGG - chr1_1:77623365-77623384 None:intergenic 35.0%
CATGTTTAGTCATAACCTCA+TGG + chr1_1:77623376-77623395 Msa0045660:intron 35.0%
GACATGCACATCATATATTC+AGG - chr1_1:77623456-77623475 None:intergenic 35.0%
AAATTTAGGTACCATGCTTG+TGG - chr1_1:77623616-77623635 None:intergenic 35.0%
GATTGAATTGGGAAGCAAAT+AGG - chr1_1:77623848-77623867 None:intergenic 35.0%
! GTCTTATTCATTTGGATGCT+TGG + chr1_1:77624107-77624126 Msa0045660:intron 35.0%
CTTATTCATTTGGATGCTTG+GGG + chr1_1:77624109-77624128 Msa0045660:intron 35.0%
TTATTCATTTGGATGCTTGG+GGG + chr1_1:77624110-77624129 Msa0045660:intron 35.0%
AACGTAGTGACGACATTTAT+AGG + chr1_1:77624254-77624273 Msa0045660:CDS 35.0%
GACGACATTTATAGGATGAA+AGG + chr1_1:77624262-77624281 Msa0045660:CDS 35.0%
AAAGGTCTTCTATCTGTTCA+AGG + chr1_1:77624280-77624299 Msa0045660:CDS 35.0%
!!! CATGGCTTTTTTCTGTAACA+GGG + chr1_1:77624484-77624503 Msa0045660:intron 35.0%
GGAGTTCATGACATATTTCA+AGG + chr1_1:77624505-77624524 Msa0045660:CDS 35.0%
TGACATATTTCAAGGTTCAC+CGG + chr1_1:77624513-77624532 Msa0045660:CDS 35.0%
AATGCTGAGGAATTGGAAAA+GGG + chr1_1:77624598-77624617 Msa0045660:CDS 35.0%
TTCTTAGTATCACAGCAAAC+AGG - chr1_1:77624632-77624651 None:intergenic 35.0%
GAACCTTCATTGAAAGATGA+AGG - chr1_1:77624788-77624807 None:intergenic 35.0%
TACATTCACTAGTTAGCCAC+GGG - chr1_1:77619717-77619736 None:intergenic 40.0%
CTACATTCACTAGTTAGCCA+CGG - chr1_1:77619718-77619737 None:intergenic 40.0%
TTCAGTGAAACAAAACGCCA+TGG - chr1_1:77619807-77619826 None:intergenic 40.0%
! TTGTCTTTGCTGTACTGTGA+GGG + chr1_1:77620432-77620451 Msa0045660:CDS 40.0%
TAATACAGGTTTGGCGAATC+CGG + chr1_1:77620623-77620642 Msa0045660:intron 40.0%
! AATCCAGACCTTTTATGCTG+AGG + chr1_1:77620653-77620672 Msa0045660:CDS 40.0%
TATCCTCAGCATAAAAGGTC+TGG - chr1_1:77620659-77620678 None:intergenic 40.0%
! GCTATCCCGTTATGGAATTT+TGG - chr1_1:77621466-77621485 None:intergenic 40.0%
! AAATTCCATAACGGGATAGC+AGG + chr1_1:77621466-77621485 Msa0045660:intron 40.0%
TAACTGTGACTGACAAGAAG+AGG + chr1_1:77621551-77621570 Msa0045660:intron 40.0%
AACTGTGACTGACAAGAAGA+GGG + chr1_1:77621552-77621571 Msa0045660:intron 40.0%
GCTGCACCTCATAATTAGAT+AGG - chr1_1:77621682-77621701 None:intergenic 40.0%
!! CATATAGCAGCAGAGCATTT+TGG - chr1_1:77622329-77622348 None:intergenic 40.0%
CAAAATGCTCTGCTGCTATA+TGG + chr1_1:77622327-77622346 Msa0045660:intron 40.0%
CGAATCAGACATCACTTCTT+TGG + chr1_1:77622784-77622803 Msa0045660:CDS 40.0%
! GATTATGTTCTTGGCATTGG+AGG + chr1_1:77622983-77623002 Msa0045660:CDS 40.0%
GCACATCATATATTCAGGCT+TGG - chr1_1:77623451-77623470 None:intergenic 40.0%
!! GATCATGATGATGGTGTTCA+TGG - chr1_1:77623562-77623581 None:intergenic 40.0%
CATGTGAATCTTCATGGTGA+TGG - chr1_1:77623592-77623611 None:intergenic 40.0%
TGTGGTCATGTGAATCTTCA+TGG - chr1_1:77623598-77623617 None:intergenic 40.0%
AGGAAACTTAGACCTTGAGA+AGG + chr1_1:77624040-77624059 Msa0045660:CDS 40.0%
AGCAAGTACTAACCTTCTCA+AGG - chr1_1:77624055-77624074 None:intergenic 40.0%
CTGAAGCAAAAAGTCTTCGT+TGG + chr1_1:77624158-77624177 Msa0045660:intron 40.0%
GTCACTACGTTCCATCAATA+AGG - chr1_1:77624245-77624264 None:intergenic 40.0%
TCAATTAAGCGACATGAGTC+AGG + chr1_1:77624370-77624389 Msa0045660:intron 40.0%
CGAGACACATATAACACAAG+CGG + chr1_1:77624396-77624415 Msa0045660:intron 40.0%
TCAGTTTCGCCAATAAAGCA+TGG + chr1_1:77624466-77624485 Msa0045660:intron 40.0%
!!! GCATGGCTTTTTTCTGTAAC+AGG + chr1_1:77624483-77624502 Msa0045660:intron 40.0%
TATTTCAAGGTTCACCGGAA+AGG + chr1_1:77624518-77624537 Msa0045660:CDS 40.0%
GAACTTGAATGCTGAGGAAT+TGG + chr1_1:77624591-77624610 Msa0045660:CDS 40.0%
GAATGCTGAGGAATTGGAAA+AGG + chr1_1:77624597-77624616 Msa0045660:CDS 40.0%
ATGCTGAGGAATTGGAAAAG+GGG + chr1_1:77624599-77624618 Msa0045660:CDS 40.0%
ACATTCACTAGTTAGCCACG+GGG - chr1_1:77619716-77619735 None:intergenic 45.0%
AGAAGAGTGGTGAAGGGTTT+GGG - chr1_1:77619866-77619885 None:intergenic 45.0%
AAGAAGAGTGGTGAAGGGTT+TGG - chr1_1:77619867-77619886 None:intergenic 45.0%
GTGGAAAGAAGAGTGGTGAA+GGG - chr1_1:77619872-77619891 None:intergenic 45.0%
!! AGAGGCGAGTGAGTTTGTTA+TGG - chr1_1:77619973-77619992 None:intergenic 45.0%
GTTATCAGGTGGAATAACGG+TGG - chr1_1:77620047-77620066 None:intergenic 45.0%
GCGGTTATCAGGTGGAATAA+CGG - chr1_1:77620050-77620069 None:intergenic 45.0%
!!! ACCATCATCACCGGTTTTCT+CGG + chr1_1:77620079-77620098 Msa0045660:CDS 45.0%
GGAGCATGGAAAACGAATTG+CGG + chr1_1:77620226-77620245 Msa0045660:CDS 45.0%
TTAGTTGCGGCAAAAACGTC+CGG + chr1_1:77620379-77620398 Msa0045660:CDS 45.0%
! GTTGTCTTTGCTGTACTGTG+AGG + chr1_1:77620431-77620450 Msa0045660:CDS 45.0%
! TGTCTTTGCTGTACTGTGAG+GGG + chr1_1:77620433-77620452 Msa0045660:CDS 45.0%
!! GTTGGATGGTGTTGTCACTT+TGG + chr1_1:77620698-77620717 Msa0045660:CDS 45.0%
! TTGGTTGATGCGAAACATGC+TGG + chr1_1:77620717-77620736 Msa0045660:CDS 45.0%
CTTGACGAGGTTAAGCCAAA+AGG + chr1_1:77620747-77620766 Msa0045660:CDS 45.0%
GCTATAGCGCTATTGCATAG+CGG + chr1_1:77621098-77621117 Msa0045660:intron 45.0%
TTGGGAGATAGCAGCTATAG+TGG + chr1_1:77621175-77621194 Msa0045660:intron 45.0%
!!! CCGTTATGGAATTTTGGGGT+CGG - chr1_1:77621460-77621479 None:intergenic 45.0%
CCGACCCCAAAATTCCATAA+CGG + chr1_1:77621457-77621476 Msa0045660:intron 45.0%
CGACCCCAAAATTCCATAAC+GGG + chr1_1:77621458-77621477 Msa0045660:intron 45.0%
ACTGTGACTGACAAGAAGAG+GGG + chr1_1:77621553-77621572 Msa0045660:intron 45.0%
TCAATAGCAGCAGAGCAGTT+TGG - chr1_1:77621722-77621741 None:intergenic 45.0%
ACTATATTGCAGTATGGCCC+CGG + chr1_1:77621746-77621765 Msa0045660:intron 45.0%
ATGCATAGAAAGACCAAGCC+GGG - chr1_1:77621767-77621786 None:intergenic 45.0%
GATGCATAGAAAGACCAAGC+CGG - chr1_1:77621768-77621787 None:intergenic 45.0%
!! AGCAGAGCATTTTGGTGTAG+TGG - chr1_1:77622321-77622340 None:intergenic 45.0%
!! CTGAAATATGTAGCGGGCTA+TGG + chr1_1:77622424-77622443 Msa0045660:intron 45.0%
TTGCACCAGACTGATCTTGT+TGG + chr1_1:77622761-77622780 Msa0045660:intron 45.0%
ATTCGCCAACAAGATCAGTC+TGG - chr1_1:77622769-77622788 None:intergenic 45.0%
ACATCACTTCTTTGGTCCAG+CGG + chr1_1:77622792-77622811 Msa0045660:CDS 45.0%
!! TTCTTTGGTCCAGCGGATTA+GGG + chr1_1:77622799-77622818 Msa0045660:CDS 45.0%
!! TGGCCAGGCTGTTTATTTTC+TGG - chr1_1:77622928-77622947 None:intergenic 45.0%
ACAGCCTGGCCAATTTAAAG+AGG + chr1_1:77622936-77622955 Msa0045660:CDS 45.0%
CCTGGCCAATTTAAAGAGGA+CGG + chr1_1:77622940-77622959 Msa0045660:CDS 45.0%
AAAGAGGACGGAGTATGGAA+AGG + chr1_1:77622952-77622971 Msa0045660:CDS 45.0%
GGAGTATGGAAAGGTGAACT+TGG + chr1_1:77622961-77622980 Msa0045660:CDS 45.0%
! TGGCATTGGAGGCTTTGATT+TGG + chr1_1:77622994-77623013 Msa0045660:CDS 45.0%
!! TTGGAGGCTTTGATTTGGAG+AGG + chr1_1:77622999-77623018 Msa0045660:CDS 45.0%
CAAAGCAAGGCAGTTGACAA+GGG - chr1_1:77623352-77623371 None:intergenic 45.0%
ACAAAGCAAGGCAGTTGACA+AGG - chr1_1:77623353-77623372 None:intergenic 45.0%
!! GAGAGCGCTGTTAATGATGA+AGG + chr1_1:77623497-77623516 Msa0045660:CDS 45.0%
ATGGTCATGGTCATGGCTAT+GGG - chr1_1:77623543-77623562 None:intergenic 45.0%
! GATGATGGTGTTCATGGTCA+TGG - chr1_1:77623556-77623575 None:intergenic 45.0%
!! AATCTTCATGGTGATGGTGG+TGG - chr1_1:77623586-77623605 None:intergenic 45.0%
!! GTGAATCTTCATGGTGATGG+TGG - chr1_1:77623589-77623608 None:intergenic 45.0%
GATTCACATGACCACAAGCA+TGG + chr1_1:77623602-77623621 Msa0045660:CDS 45.0%
CATGATCATAGTCACGATCC+TGG + chr1_1:77623990-77624009 Msa0045660:CDS 45.0%
! TCAGTGAGCATAGTTTGCGA+AGG + chr1_1:77624020-77624039 Msa0045660:CDS 45.0%
CTTCGTTGGCATTTATGTGC+TGG + chr1_1:77624172-77624191 Msa0045660:intron 45.0%
CTATAGGCTAACATGTGGCT+TGG + chr1_1:77624217-77624236 Msa0045660:intron 45.0%
!! GTGGCTTGGTACCTTATTGA+TGG + chr1_1:77624231-77624250 Msa0045660:CDS 45.0%
AAGCGGTGTTTGTGATTCAG+AGG + chr1_1:77624413-77624432 Msa0045660:intron 45.0%
TTGTTTGTCCTTGGCTCATC+TGG - chr1_1:77624553-77624572 None:intergenic 45.0%
AGGGAAGAACTTGAATGCTG+AGG + chr1_1:77624585-77624604 Msa0045660:CDS 45.0%
! GGGTTTGGGTTTGCGATAAG+CGG - chr1_1:77619852-77619871 None:intergenic 50.0%
GGTGGAAAGAAGAGTGGTGA+AGG - chr1_1:77619873-77619892 None:intergenic 50.0%
!! GGTGTTGGTGGAAAGAAGAG+TGG - chr1_1:77619879-77619898 None:intergenic 50.0%
GAGATGAGGTGGATGATGAG+AGG - chr1_1:77619991-77620010 None:intergenic 50.0%
AATAACGGTGGAGACGTCGT+CGG - chr1_1:77620035-77620054 None:intergenic 50.0%
!! TGATGATGGTGGCAGGAATG+CGG - chr1_1:77620069-77620088 None:intergenic 50.0%
ATTCCTGCCACCATCATCAC+CGG + chr1_1:77620070-77620089 Msa0045660:CDS 50.0%
!! GAGAAAACCGGTGATGATGG+TGG - chr1_1:77620080-77620099 None:intergenic 50.0%
ACCGAGAAAACCGGTGATGA+TGG - chr1_1:77620083-77620102 None:intergenic 50.0%
!!! ATCACCGGTTTTCTCGGTTC+CGG + chr1_1:77620085-77620104 Msa0045660:CDS 50.0%
CATATTCTCACAGCGGAGCA+TGG + chr1_1:77620212-77620231 Msa0045660:CDS 50.0%
!! TGCTGGTTTGCATCTTGACG+AGG + chr1_1:77620734-77620753 Msa0045660:CDS 50.0%
CGAGGTTAAGCCAAAAGGTG+TGG + chr1_1:77620752-77620771 Msa0045660:CDS 50.0%
! GCCAAAAGGTGTGGTCAATG+AGG + chr1_1:77620761-77620780 Msa0045660:CDS 50.0%
! GCCTCATTGACCACACCTTT+TGG - chr1_1:77620765-77620784 None:intergenic 50.0%
! TCCATAACGGGATAGCAGGA+TGG + chr1_1:77621470-77621489 Msa0045660:intron 50.0%
CTGTGACTGACAAGAAGAGG+GGG + chr1_1:77621554-77621573 Msa0045660:intron 50.0%
!! AGTTTGGTGATGCGGTGAGA+TGG - chr1_1:77621706-77621725 None:intergenic 50.0%
!! AGCAGAGCAGTTTGGTGATG+CGG - chr1_1:77621714-77621733 None:intergenic 50.0%
TGCATAGAAAGACCAAGCCG+GGG - chr1_1:77621766-77621785 None:intergenic 50.0%
CTGAACTACATAGTGCGCTG+TGG + chr1_1:77621809-77621828 Msa0045660:intron 50.0%
CGCCGCGACAACTATTGTTT+CGG + chr1_1:77622274-77622293 Msa0045660:intron 50.0%
GGCCGAAACAATAGTTGTCG+CGG - chr1_1:77622279-77622298 None:intergenic 50.0%
!! TTTTGGTGTAGTGGCCGCAA+CGG - chr1_1:77622312-77622331 None:intergenic 50.0%
! CTTCTTTGGTCCAGCGGATT+AGG + chr1_1:77622798-77622817 Msa0045660:CDS 50.0%
AGACACTAACCCTAATCCGC+TGG - chr1_1:77622811-77622830 None:intergenic 50.0%
CCGTCCTCTTTAAATTGGCC+AGG - chr1_1:77622943-77622962 None:intergenic 50.0%
CATGGTCATGGTCATGGCTA+TGG - chr1_1:77623544-77623563 None:intergenic 50.0%
GGTGTTCATGGTCATGGTCA+TGG - chr1_1:77623550-77623569 None:intergenic 50.0%
! GGTGGTGGTGATCATGATGA+TGG - chr1_1:77623571-77623590 None:intergenic 50.0%
ATGCTCACTGATGAAACGCC+AGG - chr1_1:77624011-77624030 None:intergenic 50.0%
AAGGTTCACCGGAAAGGTTG+TGG + chr1_1:77624524-77624543 Msa0045660:CDS 50.0%
GCAGGAATGCGGTTATCAGG+TGG - chr1_1:77620058-77620077 None:intergenic 55.0%
GTGGCAGGAATGCGGTTATC+AGG - chr1_1:77620061-77620080 None:intergenic 55.0%
!! AAACCGGTGATGATGGTGGC+AGG - chr1_1:77620076-77620095 None:intergenic 55.0%
CTTGCCGGAACCGAGAAAAC+CGG - chr1_1:77620092-77620111 None:intergenic 55.0%
AAGGTCTGGATTATCGGCGC+CGG - chr1_1:77620645-77620664 None:intergenic 55.0%
GCCATCCTGCTATCCCGTTA+TGG - chr1_1:77621474-77621493 None:intergenic 55.0%
CAATAGTTGTCGCGGCGAGA+TGG - chr1_1:77622271-77622290 None:intergenic 55.0%
GGCCACTATAGCTTCCGTTG+CGG + chr1_1:77622295-77622314 Msa0045660:intron 55.0%
TCTGGCTGCCACAACCTTTC+CGG - chr1_1:77624535-77624554 None:intergenic 55.0%
! GGTTTGAGGCGGAGATGAGG+TGG - chr1_1:77620002-77620021 None:intergenic 60.0%
! GGTGGTTTGAGGCGGAGATG+AGG - chr1_1:77620005-77620024 None:intergenic 60.0%
GAGTCGTCGGTGGTTTGAGG+CGG - chr1_1:77620013-77620032 None:intergenic 60.0%
TCGGAGTCGTCGGTGGTTTG+AGG - chr1_1:77620016-77620035 None:intergenic 60.0%
! CGGTTTTCTCGGTTCCGGCA+AGG + chr1_1:77620090-77620109 Msa0045660:CDS 60.0%
ATTGCAGTATGGCCCCGGCT+TGG + chr1_1:77621751-77621770 Msa0045660:intron 60.0%
GGCCGCAACGGAAGCTATAG+TGG - chr1_1:77622300-77622319 None:intergenic 60.0%
TGTGGCAGCCAGATGAGCCA+AGG + chr1_1:77624542-77624561 Msa0045660:CDS 60.0%
GGAGACGTCGTCGGAGTCGT+CGG - chr1_1:77620026-77620045 None:intergenic 65.0%
GACGTCGTCGGAGTCGTCGG+TGG - chr1_1:77620023-77620042 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77619701 77624902 77619701 ID=Msa0045660;Name=Msa0045660
chr1_1 mRNA 77619701 77624902 77619701 ID=Msa0045660-mRNA-1;Parent=Msa0045660;Name=Msa0045660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=105|1|1|1|1|1|10|260|449
chr1_1 exon 77619701 77620111 77619701 ID=Msa0045660-mRNA-1:exon:26567;Parent=Msa0045660-mRNA-1
chr1_1 exon 77620197 77620262 77620197 ID=Msa0045660-mRNA-1:exon:26568;Parent=Msa0045660-mRNA-1
chr1_1 exon 77620352 77620532 77620352 ID=Msa0045660-mRNA-1:exon:26569;Parent=Msa0045660-mRNA-1
chr1_1 exon 77620631 77620827 77620631 ID=Msa0045660-mRNA-1:exon:26570;Parent=Msa0045660-mRNA-1
chr1_1 exon 77622770 77622820 77622770 ID=Msa0045660-mRNA-1:exon:26571;Parent=Msa0045660-mRNA-1
chr1_1 exon 77622929 77623020 77622929 ID=Msa0045660-mRNA-1:exon:26572;Parent=Msa0045660-mRNA-1
chr1_1 exon 77623493 77623623 77623493 ID=Msa0045660-mRNA-1:exon:26573;Parent=Msa0045660-mRNA-1
chr1_1 exon 77623979 77624061 77623979 ID=Msa0045660-mRNA-1:exon:26574;Parent=Msa0045660-mRNA-1
chr1_1 exon 77624223 77624327 77624223 ID=Msa0045660-mRNA-1:exon:26575;Parent=Msa0045660-mRNA-1
chr1_1 exon 77624505 77624902 77624505 ID=Msa0045660-mRNA-1:exon:26576;Parent=Msa0045660-mRNA-1
chr1_1 five_prime_UTR 77619701 77619805 77619701 ID=Msa0045660-mRNA-1:five_prime_utr;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77619806 77620111 77619806 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77620197 77620262 77620197 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77620352 77620532 77620352 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77620631 77620827 77620631 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77622770 77622820 77622770 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77622929 77623020 77622929 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77623493 77623623 77623493 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77623979 77624061 77623979 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77624223 77624327 77624223 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 CDS 77624505 77624642 77624505 ID=Msa0045660-mRNA-1:cds;Parent=Msa0045660-mRNA-1
chr1_1 three_prime_UTR 77624643 77624902 77624643 ID=Msa0045660-mRNA-1:three_prime_utr;Parent=Msa0045660-mRNA-1
Gene Sequence

>Msa0045660

ATGGCGTTTTGTTTCACTGAACTTGCTTCAAGCTTATTTGGCGCCGCTTATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGACAACACTTCTGAATCATATTCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGTCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACTTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACTATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGACTGATCTTGTTGGCGAATCAGACATCACTTCTTTGGTCCAGCGGATTAGGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCAGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAAATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>Msa0045660

MAFCFTELASSLFGAAYRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTSGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGESDITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL*