AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1371840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371840 MtrunA17_Chr1g0212851 99.109 449 4 0 1 449 1 449 0.0 915
Msa1371840 MtrunA17_Chr8g0369371 59.916 237 83 4 21 253 2 230 6.95e-89 270
Msa1371840 MtrunA17_Chr5g0418911 37.234 376 192 7 83 447 24 366 2.18e-73 235
Msa1371840 MtrunA17_Chr8g0369381 43.820 178 81 1 272 449 1 159 5.42e-42 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1371840 AT1G80480.1 78.663 389 76 2 61 449 63 444 0.0 575
Msa1371840 AT1G15730.1 71.635 416 111 3 36 449 38 448 0.0 573
Msa1371840 AT1G26520.1 37.602 367 185 6 89 447 42 372 4.41e-76 242

Find 131 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGCTTCAAGCTTATT+TGG 0.162746 tig0019249:+182090 Msa1371840:CDS
CTTCTTTGGTCCAGCGGATT+AGG 0.207261 tig0019249:+185063 Msa1371840:CDS
ATGGTCAAATTTGCCTTTCT+TGG 0.221608 tig0019249:-182757 None:intergenic
ATACTCCGTCCTCTTTAAAT+TGG 0.236187 tig0019249:-185210 None:intergenic
GAATGAAAGATTTGTCTTTC+AGG 0.236233 tig0019249:+186569 Msa1371840:CDS
GTGAACTTGGATTATGTTCT+TGG 0.237961 tig0019249:+185239 Msa1371840:CDS
TCTGGCTGCCACAACCTTTC+CGG 0.245017 tig0019249:-186795 None:intergenic
CGAATCAGACATCACTTCTT+TGG 0.265430 tig0019249:+185049 Msa1371840:CDS
TTGTTTGTCCTTGGCTCATC+TGG 0.268152 tig0019249:-186813 None:intergenic
GCCTCATTGACCACACCTTT+TGG 0.295052 tig0019249:-183028 None:intergenic
CTACGGAAGATTGTAGAAAT+TGG 0.299599 tig0019249:-182207 None:intergenic
ACTAGTGAATGTAGTAGTTT+TGG 0.300487 tig0019249:+181988 Msa1371840:five_prime_UTR
AATAGTATCCTCAGCATAAA+AGG 0.305064 tig0019249:-182927 None:intergenic
TGATCGAATAATCGTAAATA+AGG 0.306250 tig0019249:+183072 Msa1371840:CDS
AGAAGAGTGGTGAAGGGTTT+GGG 0.309735 tig0019249:-182129 None:intergenic
GAACTTGAATGCTGAGGAAT+TGG 0.310817 tig0019249:+186854 Msa1371840:CDS
AATTTAAAGAGGACGGAGTA+TGG 0.326999 tig0019249:+185212 Msa1371840:CDS
AAGAAGAGTGGTGAAGGGTT+TGG 0.330035 tig0019249:-182130 None:intergenic
TGGCATTGGAGGCTTTGATT+TGG 0.346009 tig0019249:+185259 Msa1371840:CDS
GCTAAACCTTGTTGTTTACT+TGG 0.358930 tig0019249:+182039 Msa1371840:five_prime_UTR
TTCTTTGGTCCAGCGGATTA+GGG 0.359042 tig0019249:+185064 Msa1371840:CDS
GCATAAAAGGTCTGGATTAT+CGG 0.359801 tig0019249:-182914 None:intergenic
TAATACAGGTTTGGCGAATC+CGG 0.361283 tig0019249:+182889 Msa1371840:intron
GTGGCAGGAATGCGGTTATC+AGG 0.367337 tig0019249:-182324 None:intergenic
GTCACTACGTTCCATCAATA+AGG 0.373389 tig0019249:-186505 None:intergenic
TTGGATTATGTTCTTGGCAT+TGG 0.395925 tig0019249:+185245 Msa1371840:CDS
TTTGGTGAGATTGATATTGA+TGG 0.412472 tig0019249:+182618 Msa1371840:CDS
AGATGAAGGTATTCTAGAAA+TGG 0.416613 tig0019249:-187034 None:intergenic
AGAGGCGAGTGAGTTTGTTA+TGG 0.423350 tig0019249:-182236 None:intergenic
TTCACTATTCATATAGTAAG+TGG 0.425610 tig0019249:-187002 None:intergenic
ATACCTTCATCTTTCAATGA+AGG 0.428015 tig0019249:+187045 Msa1371840:three_prime_UTR
GAAATTGGAGATGAGTTTAA+CGG 0.433464 tig0019249:-182192 None:intergenic
CATGGTCATGGTCATGGCTA+TGG 0.434201 tig0019249:-185806 None:intergenic
GTGGCTTGGTACCTTATTGA+TGG 0.439152 tig0019249:+186494 Msa1371840:CDS
AAATGATGATGATACCTTGC+CGG 0.444794 tig0019249:-182370 None:intergenic
GGAGTTCATGACATATTTCA+AGG 0.445771 tig0019249:+186768 Msa1371840:CDS
AACGTAGTGACGACATTTAT+AGG 0.447587 tig0019249:+186517 Msa1371840:CDS
TATCCTCAGCATAAAAGGTC+TGG 0.451814 tig0019249:-182922 None:intergenic
CCGTCCTCTTTAAATTGGCC+AGG 0.458430 tig0019249:-185205 None:intergenic
TGTGGTCATGTGAATCTTCA+TGG 0.466615 tig0019249:-185860 None:intergenic
GAATGCTGAGGAATTGGAAA+AGG 0.468936 tig0019249:+186860 Msa1371840:CDS
GATCATGATGATGGTGTTCA+TGG 0.472248 tig0019249:-185824 None:intergenic
AAAGGTCTTCTATCTGTTCA+AGG 0.474112 tig0019249:+186543 Msa1371840:CDS
TTGTCTTTGCTGTACTGTGA+GGG 0.479297 tig0019249:+182698 Msa1371840:CDS
CATATTGTTATTGAGACTAC+TGG 0.484719 tig0019249:+182777 Msa1371840:CDS
TTGCACCAGACTGATCTTGT+TGG 0.485087 tig0019249:+185026 Msa1371840:intron
CAGTAGTCTCAATAACAATA+TGG 0.488237 tig0019249:-182776 None:intergenic
ATGGTCATGGTCATGGCTAT+GGG 0.492078 tig0019249:-185805 None:intergenic
CTATAGGCTAACATGTGGCT+TGG 0.493336 tig0019249:+186480 Msa1371840:intron
GATTATGTTCTTGGCATTGG+AGG 0.493460 tig0019249:+185248 Msa1371840:CDS
GAATTAGTCACTTCCAAGAA+AGG 0.495832 tig0019249:+182744 Msa1371840:CDS
GAAACACGTGTGAAATCCAT+TGG 0.495998 tig0019249:-187151 None:intergenic
ACCGAGAAAACCGGTGATGA+TGG 0.498944 tig0019249:-182346 None:intergenic
GAACCTTCATTGAAAGATGA+AGG 0.501399 tig0019249:-187048 None:intergenic
TTTGGTATTTCAGTTCATGA+TGG 0.501956 tig0019249:-187125 None:intergenic
TTCTTAGTATCACAGCAAAC+AGG 0.504205 tig0019249:-186892 None:intergenic
TACATTCACTAGTTAGCCAC+GGG 0.506381 tig0019249:-181978 None:intergenic
GGAGTATGGAAAGGTGAACT+TGG 0.507746 tig0019249:+185226 Msa1371840:CDS
AATTGCGGTTATTGAAAATG+AGG 0.508358 tig0019249:+182507 Msa1371840:CDS
AATGCTGAGGAATTGGAAAA+GGG 0.512342 tig0019249:+186861 Msa1371840:CDS
GTTGGATGGTGTTGTCACTT+TGG 0.513457 tig0019249:+182964 Msa1371840:CDS
TCACTATTCATATAGTAAGT+GGG 0.516115 tig0019249:-187001 None:intergenic
GTTTGTTATGGTTGTTACTA+CGG 0.516237 tig0019249:-182224 None:intergenic
TTTAATGAAGTCAAGTTGGA+TGG 0.519334 tig0019249:+182950 Msa1371840:CDS
TCGGAGTCGTCGGTGGTTTG+AGG 0.520426 tig0019249:-182279 None:intergenic
TGACATATTTCAAGGTTCAC+CGG 0.523489 tig0019249:+186776 Msa1371840:CDS
GGTGTTCATGGTCATGGTCA+TGG 0.528471 tig0019249:-185812 None:intergenic
GGAGACGTCGTCGGAGTCGT+CGG 0.528650 tig0019249:-182289 None:intergenic
CTTGCCGGAACCGAGAAAAC+CGG 0.529351 tig0019249:-182355 None:intergenic
AATCTTCATGGTGATGGTGG+TGG 0.536012 tig0019249:-185848 None:intergenic
TATTGATGGTTCTTTAGTTG+CGG 0.539178 tig0019249:+182632 Msa1371840:CDS
CTTGACGAGGTTAAGCCAAA+AGG 0.540274 tig0019249:+183013 Msa1371840:CDS
ATTCCTGCCACCATCATCAC+CGG 0.540312 tig0019249:+182336 Msa1371840:CDS
AAACCGGTGATGATGGTGGC+AGG 0.542945 tig0019249:-182339 None:intergenic
CATATTCTCACAGCGGAGCA+TGG 0.544248 tig0019249:+182478 Msa1371840:CDS
ATGCTCACTGATGAAACGCC+AGG 0.549059 tig0019249:-186271 None:intergenic
TTGGTTGATGCGAAACATGC+TGG 0.549484 tig0019249:+182983 Msa1371840:CDS
GCGGTTATCAGGTGGAATAA+CGG 0.551353 tig0019249:-182313 None:intergenic
CATGATCATAGTCACGATCC+TGG 0.552341 tig0019249:+186253 Msa1371840:CDS
GGTGGTGGTGATCATGATGA+TGG 0.553558 tig0019249:-185833 None:intergenic
GAGAGCGCTGTTAATGATGA+AGG 0.554591 tig0019249:+185762 Msa1371840:CDS
ATTCCAGAAAATAAACAGCC+TGG 0.556534 tig0019249:+185187 Msa1371840:intron
AAGGTTCACCGGAAAGGTTG+TGG 0.556980 tig0019249:+186787 Msa1371840:CDS
GACGACATTTATAGGATGAA+AGG 0.558665 tig0019249:+186525 Msa1371840:CDS
TATTTCAAGGTTCACCGGAA+AGG 0.560823 tig0019249:+186781 Msa1371840:CDS
GGGTTTGGGTTTGCGATAAG+CGG 0.562113 tig0019249:-182115 None:intergenic
CATGTGAATCTTCATGGTGA+TGG 0.566710 tig0019249:-185854 None:intergenic
GATATTATGTTGTTGAACAA+TGG 0.568349 tig0019249:+182675 Msa1371840:CDS
AGACACTAACCCTAATCCGC+TGG 0.576738 tig0019249:-185073 None:intergenic
CTACATTCACTAGTTAGCCA+CGG 0.580374 tig0019249:-181979 None:intergenic
AGCAAGTACTAACCTTCTCA+AGG 0.584526 tig0019249:-186315 None:intergenic
AAAGAGGACGGAGTATGGAA+AGG 0.586024 tig0019249:+185217 Msa1371840:CDS
GTGAATCTTCATGGTGATGG+TGG 0.586196 tig0019249:-185851 None:intergenic
TTGGAGGCTTTGATTTGGAG+AGG 0.586416 tig0019249:+185264 Msa1371840:CDS
GGTGGAAAGAAGAGTGGTGA+AGG 0.586615 tig0019249:-182136 None:intergenic
TGCTGGTTTGCATCTTGACG+AGG 0.587527 tig0019249:+183000 Msa1371840:CDS
GGTTTGAGGCGGAGATGAGG+TGG 0.587638 tig0019249:-182265 None:intergenic
GGTGTTGGTGGAAAGAAGAG+TGG 0.592017 tig0019249:-182142 None:intergenic
CAACATAATATCTTCAGCAC+CGG 0.592357 tig0019249:-182664 None:intergenic
TTCAGTGAAACAAAACGCCA+TGG 0.593485 tig0019249:-182070 None:intergenic
ACAGCCTGGCCAATTTAAAG+AGG 0.594420 tig0019249:+185201 Msa1371840:CDS
GCCAAAAGGTGTGGTCAATG+AGG 0.599909 tig0019249:+183027 Msa1371840:CDS
AAATTTAGGTACCATGCTTG+TGG 0.601243 tig0019249:-185878 None:intergenic
GTTGTCTTTGCTGTACTGTG+AGG 0.604741 tig0019249:+182697 Msa1371840:CDS
GACGTCGTCGGAGTCGTCGG+TGG 0.608943 tig0019249:-182286 None:intergenic
GGTGGTTTGAGGCGGAGATG+AGG 0.610253 tig0019249:-182268 None:intergenic
GATGATGGTGTTCATGGTCA+TGG 0.610283 tig0019249:-185818 None:intergenic
AGGGAAGAACTTGAATGCTG+AGG 0.611753 tig0019249:+186848 Msa1371840:CDS
GTGGAAAGAAGAGTGGTGAA+GGG 0.612512 tig0019249:-182135 None:intergenic
ACATCACTTCTTTGGTCCAG+CGG 0.614631 tig0019249:+185057 Msa1371840:CDS
TGTCTTTGCTGTACTGTGAG+GGG 0.617492 tig0019249:+182699 Msa1371840:CDS
AAGGTCTGGATTATCGGCGC+CGG 0.617720 tig0019249:-182908 None:intergenic
GCAGGAATGCGGTTATCAGG+TGG 0.618572 tig0019249:-182321 None:intergenic
CCTGGCCAATTTAAAGAGGA+CGG 0.624870 tig0019249:+185205 Msa1371840:CDS
TCAGTGAGCATAGTTTGCGA+AGG 0.626638 tig0019249:+186283 Msa1371840:CDS
GAGTCGTCGGTGGTTTGAGG+CGG 0.627298 tig0019249:-182276 None:intergenic
AGGAAACTTAGACCTTGAGA+AGG 0.627667 tig0019249:+186303 Msa1371840:CDS
GATTCACATGACCACAAGCA+TGG 0.628690 tig0019249:+185867 Msa1371840:CDS
TGTGGCAGCCAGATGAGCCA+AGG 0.631087 tig0019249:+186805 Msa1371840:CDS
GAGATGAGGTGGATGATGAG+AGG 0.634300 tig0019249:-182254 None:intergenic
CGAGGTTAAGCCAAAAGGTG+TGG 0.651456 tig0019249:+183018 Msa1371840:CDS
GAGAAAACCGGTGATGATGG+TGG 0.657464 tig0019249:-182343 None:intergenic
ATGCTGAGGAATTGGAAAAG+GGG 0.668894 tig0019249:+186862 Msa1371840:CDS
GTTATCAGGTGGAATAACGG+TGG 0.683146 tig0019249:-182310 None:intergenic
TGATGATGGTGGCAGGAATG+CGG 0.686059 tig0019249:-182332 None:intergenic
AATAACGGTGGAGACGTCGT+CGG 0.694029 tig0019249:-182298 None:intergenic
GGAGCATGGAAAACGAATTG+CGG 0.698183 tig0019249:+182492 Msa1371840:CDS
ATTCAGATATCATTCTAACA+AGG 0.703033 tig0019249:-182725 None:intergenic
AATGTTCCAAGTAAACAACA+AGG 0.718876 tig0019249:-182045 None:intergenic
TCTGAATCATATTCTCACAG+CGG 0.771767 tig0019249:+182471 Msa1371840:CDS
ACATTCACTAGTTAGCCACG+GGG 0.817894 tig0019249:-181977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATAAAT+AGG - tig0019249:186003-186022 None:intergenic 0.0%
!!! AACTTATTTTTATTTAAGAA+TGG + tig0019249:183621-183640 Msa1371840:intron 10.0%
!!! TCTTAAGTTTTTTTTTTTTT+TGG + tig0019249:183917-183936 Msa1371840:intron 10.0%
!!! AAGTAAAATAAGATATTTTT+TGG - tig0019249:184271-184290 None:intergenic 10.0%
!!! ATCTAATTTTATTATTTGAA+TGG + tig0019249:186070-186089 Msa1371840:intron 10.0%
!!! TTTTTCATTGATGAAAAATA+TGG + tig0019249:183136-183155 Msa1371840:intron 15.0%
!! AAACTTAAGATTTAAATGTT+GGG - tig0019249:183907-183926 None:intergenic 15.0%
!! AAAACTTAAGATTTAAATGT+TGG - tig0019249:183908-183927 None:intergenic 15.0%
!!! ATATATTTTATGAAACTGTA+TGG + tig0019249:184744-184763 Msa1371840:intron 15.0%
!!! TTTTTCTTAAACAATTGAAA+AGG - tig0019249:185313-185332 None:intergenic 15.0%
!!! TTTTCAATTGTTTAAGAAAA+AGG + tig0019249:185312-185331 Msa1371840:intron 15.0%
!!! TAATTTTATTATTTGAATGG+TGG + tig0019249:186073-186092 Msa1371840:intron 15.0%
!!! ATTAATTTGTCTTATTCATT+TGG + tig0019249:186362-186381 Msa1371840:intron 15.0%
!! AGCATTAACATAAAAAATAA+AGG - tig0019249:186403-186422 None:intergenic 15.0%
!!! ATGAATAGTTCTTTTGATTT+TGG - tig0019249:182166-182185 None:intergenic 20.0%
!! TTGAAATGATTGAATTGAAA+TGG - tig0019249:182411-182430 None:intergenic 20.0%
!! TAAAATTGAACTGCTTATTA+GGG + tig0019249:182833-182852 Msa1371840:intron 20.0%
!!! TATTTTTAATGAAGTCAAGT+TGG + tig0019249:182946-182965 Msa1371840:CDS 20.0%
!! GCTAATTTATACTTATTACA+GGG + tig0019249:183103-183122 Msa1371840:intron 20.0%
!! TAACTAAATAATGTACAGTA+TGG + tig0019249:183202-183221 Msa1371840:intron 20.0%
!! ATAATTCAAAATTCGCTATA+TGG - tig0019249:183246-183265 None:intergenic 20.0%
!! AAAAATTCTACATCAAGTTA+TGG + tig0019249:183269-183288 Msa1371840:intron 20.0%
!! TGTATGAAAGTTTCAAATAA+CGG - tig0019249:183762-183781 None:intergenic 20.0%
!! TAAAAGTTTATAGATGTTCA+TGG - tig0019249:184296-184315 None:intergenic 20.0%
!!! TGAACATCTATAAACTTTTA+AGG + tig0019249:184296-184315 Msa1371840:intron 20.0%
!! TCTCAGTTAAAATAAGTTTA+TGG - tig0019249:184341-184360 None:intergenic 20.0%
!!! TAAATCTTAAGGGAATTTTT+TGG + tig0019249:184481-184500 Msa1371840:intron 20.0%
!!! GAATTTTCAATTTCATTATG+AGG + tig0019249:184503-184522 Msa1371840:intron 20.0%
!! TAAAAGCTTATAGATGTTAA+TGG - tig0019249:184905-184924 None:intergenic 20.0%
!!! TTAACATCTATAAGCTTTTA+AGG + tig0019249:184905-184924 Msa1371840:intron 20.0%
!!! AGCCATAAATTTATTTTAAC+TGG + tig0019249:184945-184964 Msa1371840:intron 20.0%
!!! GCCATAAATTTATTTTAACT+GGG + tig0019249:184946-184965 Msa1371840:intron 20.0%
!! TCCCAGTTAAAATAAATTTA+TGG - tig0019249:184950-184969 None:intergenic 20.0%
!!! CAAAAGTTCTAAAAGTTATA+TGG - tig0019249:185475-185494 None:intergenic 20.0%
!!! CATATAACTTTTAGAACTTT+TGG + tig0019249:185473-185492 Msa1371840:intron 20.0%
!! TGACAAATCTTATCAAAAAT+AGG - tig0019249:185968-185987 None:intergenic 20.0%
!! TTTCATAAGGACAAATTATA+AGG + tig0019249:186140-186159 Msa1371840:intron 20.0%
!!! AACTAACATACTTTTTCTAT+AGG + tig0019249:186464-186483 Msa1371840:intron 20.0%
!! TGAAAACAACAACAATAAAT+AGG - tig0019249:186616-186635 None:intergenic 20.0%
!!! ACAAACAAAATTGTTTTCAT+AGG + tig0019249:186828-186847 Msa1371840:CDS 20.0%
!!! CAAACAAAATTGTTTTCATA+GGG + tig0019249:186829-186848 Msa1371840:CDS 20.0%
!! TCAAAAAGAATAAAGGATTA+AGG - tig0019249:186932-186951 None:intergenic 20.0%
!! TGAACAATCAAAAAGAATAA+AGG - tig0019249:186939-186958 None:intergenic 20.0%
! TGCATATGATTATTGTAGTT+TGG + tig0019249:182600-182619 Msa1371840:intron 25.0%
! GATATTATGTTGTTGAACAA+TGG + tig0019249:182675-182694 Msa1371840:CDS 25.0%
! ATTCAGATATCATTCTAACA+AGG - tig0019249:182728-182747 None:intergenic 25.0%
! GTAAAATTGAACTGCTTATT+AGG + tig0019249:182832-182851 Msa1371840:intron 25.0%
! TTGACTGTTTGTATTAATAC+AGG + tig0019249:182875-182894 Msa1371840:intron 25.0%
! TGTTTGTATTAATACAGGTT+TGG + tig0019249:182880-182899 Msa1371840:intron 25.0%
! TGATCGAATAATCGTAAATA+AGG + tig0019249:183072-183091 Msa1371840:CDS 25.0%
!! AATCGTAAATAAGGTATTCA+TGG + tig0019249:183081-183100 Msa1371840:intron 25.0%
! GGCTAATTTATACTTATTAC+AGG + tig0019249:183102-183121 Msa1371840:intron 25.0%
! AATTTATACTTATTACAGGG+TGG + tig0019249:183106-183125 Msa1371840:intron 25.0%
! AATAATGTACAGTATGGTTA+TGG + tig0019249:183208-183227 Msa1371840:intron 25.0%
! ATCTAGTACAATCAAAATGT+TGG + tig0019249:183422-183441 Msa1371840:intron 25.0%
! TCTAGTACAATCAAAATGTT+GGG + tig0019249:183423-183442 Msa1371840:intron 25.0%
!!! TTTAAGAATGGCTTTTAGTT+TGG + tig0019249:183633-183652 Msa1371840:intron 25.0%
!!! TTAAGAATGGCTTTTAGTTT+GGG + tig0019249:183634-183653 Msa1371840:intron 25.0%
!! TTAGTTTGGGTTATAAAACA+TGG + tig0019249:183647-183666 Msa1371840:intron 25.0%
! GAAAATAGTGTATCATTCTT+AGG + tig0019249:183678-183697 Msa1371840:intron 25.0%
!! GAAAATGACAGTATTGTTTT+GGG + tig0019249:183842-183861 Msa1371840:intron 25.0%
!!! TATTGTTTTGGGATTTACAA+TGG + tig0019249:183853-183872 Msa1371840:intron 25.0%
! GAATTTCCTATCTAATTATG+AGG + tig0019249:183939-183958 Msa1371840:intron 25.0%
! AAATTCTCAAGAAATGCTTA+TGG + tig0019249:184152-184171 Msa1371840:intron 25.0%
! ACAGTGAAGATTTAAATGTT+GGG - tig0019249:184404-184423 None:intergenic 25.0%
! AACAGTGAAGATTTAAATGT+TGG - tig0019249:184405-184424 None:intergenic 25.0%
!! CATTTAAATCTTCACTGTTT+TGG + tig0019249:184406-184425 Msa1371840:intron 25.0%
!! ATTTAAATGTTGGGGTTTTA+AGG - tig0019249:184466-184485 None:intergenic 25.0%
! TCCCTTAAGATTTAAATGTT+GGG - tig0019249:184475-184494 None:intergenic 25.0%
! TTCCCTTAAGATTTAAATGT+TGG - tig0019249:184476-184495 None:intergenic 25.0%
! TATTGAACTGAAATATGTAG+CGG + tig0019249:184682-184701 Msa1371840:intron 25.0%
! AGTTAGACATTAATACAAAG+TGG + tig0019249:184980-184999 Msa1371840:intron 25.0%
! TCTTAAACAATTGAAAAGGA+AGG - tig0019249:185309-185328 None:intergenic 25.0%
! AATGTAAGTTTACTTCTTCT+CGG + tig0019249:185343-185362 Msa1371840:intron 25.0%
!!! ATGAGAATGATTTTAGCATA+TGG - tig0019249:185446-185465 None:intergenic 25.0%
!!! AGTTCTAAAAGTTATATGGT+AGG - tig0019249:185471-185490 None:intergenic 25.0%
! ACTCAACAATTAGATACATT+AGG - tig0019249:185511-185530 None:intergenic 25.0%
! TGGGTATTTAGATATTTCTT+CGG + tig0019249:185661-185680 Msa1371840:intron 25.0%
!! ATGTCTTCTTGATCTTTTTA+AGG + tig0019249:185736-185755 Msa1371840:intron 25.0%
! AAACAAGAAAGGATTGAATT+GGG - tig0019249:186123-186142 None:intergenic 25.0%
!!! AAAACAATTTTGTTTGTCCT+TGG - tig0019249:186825-186844 None:intergenic 25.0%
! TCACTATTCATATAGTAAGT+GGG - tig0019249:187004-187023 None:intergenic 25.0%
! TTCACTATTCATATAGTAAG+TGG - tig0019249:187005-187024 None:intergenic 25.0%
! ACTAGTGAATGTAGTAGTTT+TGG + tig0019249:181988-182007 Msa1371840:five_prime_UTR 30.0%
AATGTTCCAAGTAAACAACA+AGG - tig0019249:182048-182067 None:intergenic 30.0%
! TTTACTTGGAACATTTTCCA+TGG + tig0019249:182053-182072 Msa1371840:exon 30.0%
!!! AGTTCTTTTGATTTTGGTGT+TGG - tig0019249:182160-182179 None:intergenic 30.0%
GAAATTGGAGATGAGTTTAA+CGG - tig0019249:182195-182214 None:intergenic 30.0%
!! GTTTGTTATGGTTGTTACTA+CGG - tig0019249:182227-182246 None:intergenic 30.0%
AATTGCGGTTATTGAAAATG+AGG + tig0019249:182507-182526 Msa1371840:CDS 30.0%
TTTGGTGAGATTGATATTGA+TGG + tig0019249:182618-182637 Msa1371840:CDS 30.0%
! TATTGATGGTTCTTTAGTTG+CGG + tig0019249:182632-182651 Msa1371840:CDS 30.0%
CAGTAGTCTCAATAACAATA+TGG - tig0019249:182779-182798 None:intergenic 30.0%
! CATATTGTTATTGAGACTAC+TGG + tig0019249:182777-182796 Msa1371840:CDS 30.0%
AATAGTATCCTCAGCATAAA+AGG - tig0019249:182930-182949 None:intergenic 30.0%
!! TTTAATGAAGTCAAGTTGGA+TGG + tig0019249:182950-182969 Msa1371840:CDS 30.0%
! AATATGGATTGTCGAGAAAA+TGG + tig0019249:183152-183171 Msa1371840:intron 30.0%
! ATATGGATTGTCGAGAAAAT+GGG + tig0019249:183153-183172 Msa1371840:intron 30.0%
TTCAAAATTCGCTATATGGA+AGG - tig0019249:183242-183261 None:intergenic 30.0%
! GGAAAATGACAGTATTGTTT+TGG + tig0019249:183841-183860 Msa1371840:intron 30.0%
GATTTAAATGTTGGGCTTTA+TGG - tig0019249:183899-183918 None:intergenic 30.0%
TGTGCAAGATATAGATTCTA+TGG + tig0019249:184116-184135 Msa1371840:intron 30.0%
AAAAAACATCTCATGTGAAG+TGG + tig0019249:184230-184249 Msa1371840:intron 30.0%
ATTTAAATGTTGGGGATTTG+AGG - tig0019249:184395-184414 None:intergenic 30.0%
CAGTGAAGATTTAAATGTTG+GGG - tig0019249:184403-184422 None:intergenic 30.0%
ACCCCAACATTTAAATCTTA+AGG + tig0019249:184470-184489 Msa1371840:intron 30.0%
CCCTTAAGATTTAAATGTTG+GGG - tig0019249:184474-184493 None:intergenic 30.0%
CCCCAACATTTAAATCTTAA+GGG + tig0019249:184471-184490 Msa1371840:intron 30.0%
ATTAAATGCGTAGAAGAACT+AGG - tig0019249:184652-184671 None:intergenic 30.0%
ATTGAACTGAAATATGTAGC+GGG + tig0019249:184683-184702 Msa1371840:intron 30.0%
GAATTCTCAAGAAACACTTA+TGG + tig0019249:184770-184789 Msa1371840:intron 30.0%
GGAAGGAAACAAGAAAAAAA+AGG - tig0019249:185292-185311 None:intergenic 30.0%
AATAACTCGAGTATATGTAC+AGG - tig0019249:185407-185426 None:intergenic 30.0%
ATGTTTAGTCATAACCTCAT+GGG + tig0019249:185642-185661 Msa1371840:intron 30.0%
GAAATATCTAAATACCCATG+AGG - tig0019249:185659-185678 None:intergenic 30.0%
TCAACACACAAGACAAATTT+AGG - tig0019249:185895-185914 None:intergenic 30.0%
AGCAAATAGGTAAAAACTGT+TGG - tig0019249:186099-186118 None:intergenic 30.0%
GAAACAAGAAAGGATTGAAT+TGG - tig0019249:186124-186143 None:intergenic 30.0%
! CAATCCTTTCTTGTTTCATA+AGG + tig0019249:186127-186146 Msa1371840:intron 30.0%
TTGTCCTTATGAAACAAGAA+AGG - tig0019249:186134-186153 None:intergenic 30.0%
!! TGTAGTTTTGCTATGAAGTA+AGG + tig0019249:186195-186214 Msa1371840:intron 30.0%
!! GTAGTTTTGCTATGAAGTAA+GGG + tig0019249:186196-186215 Msa1371840:intron 30.0%
TCTTATTCATTTGGATGCTT+GGG + tig0019249:186371-186390 Msa1371840:intron 30.0%
! TTTTTCTATAGGCTAACATG+TGG + tig0019249:186475-186494 Msa1371840:intron 30.0%
GAATGAAAGATTTGTCTTTC+AGG + tig0019249:186569-186588 Msa1371840:CDS 30.0%
AGAAAAAAGCCATGCTTTAT+TGG - tig0019249:186741-186760 None:intergenic 30.0%
!! AGATGAAGGTATTCTAGAAA+TGG - tig0019249:187037-187056 None:intergenic 30.0%
ATACCTTCATCTTTCAATGA+AGG + tig0019249:187045-187064 Msa1371840:three_prime_UTR 30.0%
! TTTATGCAGTCACGATTTTA+GGG - tig0019249:187082-187101 None:intergenic 30.0%
! ATTTATGCAGTCACGATTTT+AGG - tig0019249:187083-187102 None:intergenic 30.0%
TTTGGTATTTCAGTTCATGA+TGG - tig0019249:187128-187147 None:intergenic 30.0%
CTGAAATACCAAAAATCCAA+TGG + tig0019249:187135-187154 Msa1371840:three_prime_UTR 30.0%
! TGTGAAATCCATTGGATTTT+TGG - tig0019249:187146-187165 None:intergenic 30.0%
!! GCTAAACCTTGTTGTTTACT+TGG + tig0019249:182039-182058 Msa1371840:five_prime_UTR 35.0%
! GAACTTGCTTCAAGCTTATT+TGG + tig0019249:182090-182109 Msa1371840:CDS 35.0%
!!! TCTTTTGATTTTGGTGTTGG+TGG - tig0019249:182157-182176 None:intergenic 35.0%
CTACGGAAGATTGTAGAAAT+TGG - tig0019249:182210-182229 None:intergenic 35.0%
! AAATGATGATGATACCTTGC+CGG - tig0019249:182373-182392 None:intergenic 35.0%
TCTGAATCATATTCTCACAG+CGG + tig0019249:182471-182490 Msa1371840:CDS 35.0%
CAACATAATATCTTCAGCAC+CGG - tig0019249:182667-182686 None:intergenic 35.0%
GAATTAGTCACTTCCAAGAA+AGG + tig0019249:182744-182763 Msa1371840:CDS 35.0%
ATGGTCAAATTTGCCTTTCT+TGG - tig0019249:182760-182779 None:intergenic 35.0%
GCATAAAAGGTCTGGATTAT+CGG - tig0019249:182917-182936 None:intergenic 35.0%
! AATACTTTCTTTGTGCCGTT+TGG + tig0019249:183301-183320 Msa1371840:intron 35.0%
TTGCGAGAAGTTAATCCAAA+CGG - tig0019249:183319-183338 None:intergenic 35.0%
TAACTTCTCGCAAATCACTT+CGG + tig0019249:183326-183345 Msa1371840:intron 35.0%
!! ACTTCGGTGTTGTTAAATAG+CGG + tig0019249:183342-183361 Msa1371840:intron 35.0%
TTGTACTAGATAGCATATCG+CGG - tig0019249:183413-183432 None:intergenic 35.0%
TTGCGAATAGCAGAAAACAA+CGG - tig0019249:183503-183522 None:intergenic 35.0%
TGACAACACTGAAACACTTA+TGG + tig0019249:183524-183543 Msa1371840:intron 35.0%
! TATCCCGTTATGGAATTTTG+GGG - tig0019249:183730-183749 None:intergenic 35.0%
! CTATCCCGTTATGGAATTTT+GGG - tig0019249:183731-183750 None:intergenic 35.0%
! TAAATGTTGGGCTTTATGGT+TGG - tig0019249:183895-183914 None:intergenic 35.0%
GACTACACTATATTGCAGTA+TGG + tig0019249:184006-184025 Msa1371840:intron 35.0%
ATAGATTCTATGGAACTGTC+TGG + tig0019249:184126-184145 Msa1371840:intron 35.0%
AGTTTATGGCTATTACTTGC+AGG - tig0019249:184327-184346 None:intergenic 35.0%
ATTCCAGAAAATAAACAGCC+TGG + tig0019249:185187-185206 Msa1371840:intron 35.0%
ATACTCCGTCCTCTTTAAAT+TGG - tig0019249:185213-185232 None:intergenic 35.0%
AATTTAAAGAGGACGGAGTA+TGG + tig0019249:185212-185231 Msa1371840:CDS 35.0%
GTGAACTTGGATTATGTTCT+TGG + tig0019249:185239-185258 Msa1371840:CDS 35.0%
TTGGATTATGTTCTTGGCAT+TGG + tig0019249:185245-185264 Msa1371840:CDS 35.0%
!! GAAAAATGTGAGTGCTACTT+TGG - tig0019249:185592-185611 None:intergenic 35.0%
CTAAACATGACAACAAAGCA+AGG - tig0019249:185630-185649 None:intergenic 35.0%
CATGTTTAGTCATAACCTCA+TGG + tig0019249:185641-185660 Msa1371840:intron 35.0%
GACATGCACATCATATATTC+AGG - tig0019249:185721-185740 None:intergenic 35.0%
AAATTTAGGTACCATGCTTG+TGG - tig0019249:185881-185900 None:intergenic 35.0%
GATTGAATTGGGAAGCAAAT+AGG - tig0019249:186112-186131 None:intergenic 35.0%
! GTCTTATTCATTTGGATGCT+TGG + tig0019249:186370-186389 Msa1371840:intron 35.0%
CTTATTCATTTGGATGCTTG+GGG + tig0019249:186372-186391 Msa1371840:intron 35.0%
TTATTCATTTGGATGCTTGG+GGG + tig0019249:186373-186392 Msa1371840:intron 35.0%
AACGTAGTGACGACATTTAT+AGG + tig0019249:186517-186536 Msa1371840:CDS 35.0%
GACGACATTTATAGGATGAA+AGG + tig0019249:186525-186544 Msa1371840:CDS 35.0%
AAAGGTCTTCTATCTGTTCA+AGG + tig0019249:186543-186562 Msa1371840:CDS 35.0%
!!! CATGGCTTTTTTCTGTAACA+GGG + tig0019249:186747-186766 Msa1371840:intron 35.0%
GGAGTTCATGACATATTTCA+AGG + tig0019249:186768-186787 Msa1371840:CDS 35.0%
TGACATATTTCAAGGTTCAC+CGG + tig0019249:186776-186795 Msa1371840:CDS 35.0%
AATGCTGAGGAATTGGAAAA+GGG + tig0019249:186861-186880 Msa1371840:CDS 35.0%
TTCTTAGTATCACAGCAAAC+AGG - tig0019249:186895-186914 None:intergenic 35.0%
GAACCTTCATTGAAAGATGA+AGG - tig0019249:187051-187070 None:intergenic 35.0%
TACATTCACTAGTTAGCCAC+GGG - tig0019249:181981-182000 None:intergenic 40.0%
CTACATTCACTAGTTAGCCA+CGG - tig0019249:181982-182001 None:intergenic 40.0%
TTCAGTGAAACAAAACGCCA+TGG - tig0019249:182073-182092 None:intergenic 40.0%
! TTGTCTTTGCTGTACTGTGA+GGG + tig0019249:182698-182717 Msa1371840:CDS 40.0%
TAATACAGGTTTGGCGAATC+CGG + tig0019249:182889-182908 Msa1371840:intron 40.0%
! AATCCAGACCTTTTATGCTG+AGG + tig0019249:182919-182938 Msa1371840:CDS 40.0%
TATCCTCAGCATAAAAGGTC+TGG - tig0019249:182925-182944 None:intergenic 40.0%
! GCTATCCCGTTATGGAATTT+TGG - tig0019249:183732-183751 None:intergenic 40.0%
! AAATTCCATAACGGGATAGC+AGG + tig0019249:183732-183751 Msa1371840:intron 40.0%
TAACTGTGACTGACAAGAAG+AGG + tig0019249:183817-183836 Msa1371840:intron 40.0%
AACTGTGACTGACAAGAAGA+GGG + tig0019249:183818-183837 Msa1371840:intron 40.0%
GCTGCACCTCATAATTAGAT+AGG - tig0019249:183948-183967 None:intergenic 40.0%
!! CATATAGCAGCAGAGCATTT+TGG - tig0019249:184594-184613 None:intergenic 40.0%
CAAAATGCTCTGCTGCTATA+TGG + tig0019249:184592-184611 Msa1371840:intron 40.0%
CGAATCAGACATCACTTCTT+TGG + tig0019249:185049-185068 Msa1371840:CDS 40.0%
! GATTATGTTCTTGGCATTGG+AGG + tig0019249:185248-185267 Msa1371840:CDS 40.0%
GCACATCATATATTCAGGCT+TGG - tig0019249:185716-185735 None:intergenic 40.0%
!! GATCATGATGATGGTGTTCA+TGG - tig0019249:185827-185846 None:intergenic 40.0%
CATGTGAATCTTCATGGTGA+TGG - tig0019249:185857-185876 None:intergenic 40.0%
TGTGGTCATGTGAATCTTCA+TGG - tig0019249:185863-185882 None:intergenic 40.0%
AGGAAACTTAGACCTTGAGA+AGG + tig0019249:186303-186322 Msa1371840:CDS 40.0%
AGCAAGTACTAACCTTCTCA+AGG - tig0019249:186318-186337 None:intergenic 40.0%
CTGAAGCAAAAAGTCTTCGT+TGG + tig0019249:186421-186440 Msa1371840:intron 40.0%
GTCACTACGTTCCATCAATA+AGG - tig0019249:186508-186527 None:intergenic 40.0%
TCAATTAAGCGACATGAGTC+AGG + tig0019249:186633-186652 Msa1371840:intron 40.0%
CGAGACACATATAACACAAG+CGG + tig0019249:186659-186678 Msa1371840:intron 40.0%
TCAGTTTCGCCAATAAAGCA+TGG + tig0019249:186729-186748 Msa1371840:intron 40.0%
!!! GCATGGCTTTTTTCTGTAAC+AGG + tig0019249:186746-186765 Msa1371840:intron 40.0%
TATTTCAAGGTTCACCGGAA+AGG + tig0019249:186781-186800 Msa1371840:CDS 40.0%
GAACTTGAATGCTGAGGAAT+TGG + tig0019249:186854-186873 Msa1371840:CDS 40.0%
GAATGCTGAGGAATTGGAAA+AGG + tig0019249:186860-186879 Msa1371840:CDS 40.0%
ATGCTGAGGAATTGGAAAAG+GGG + tig0019249:186862-186881 Msa1371840:CDS 40.0%
ACATTCACTAGTTAGCCACG+GGG - tig0019249:181980-181999 None:intergenic 45.0%
AGAAGAGTGGTGAAGGGTTT+GGG - tig0019249:182132-182151 None:intergenic 45.0%
AAGAAGAGTGGTGAAGGGTT+TGG - tig0019249:182133-182152 None:intergenic 45.0%
GTGGAAAGAAGAGTGGTGAA+GGG - tig0019249:182138-182157 None:intergenic 45.0%
!! AGAGGCGAGTGAGTTTGTTA+TGG - tig0019249:182239-182258 None:intergenic 45.0%
GTTATCAGGTGGAATAACGG+TGG - tig0019249:182313-182332 None:intergenic 45.0%
GCGGTTATCAGGTGGAATAA+CGG - tig0019249:182316-182335 None:intergenic 45.0%
!!! ACCATCATCACCGGTTTTCT+CGG + tig0019249:182345-182364 Msa1371840:CDS 45.0%
GGAGCATGGAAAACGAATTG+CGG + tig0019249:182492-182511 Msa1371840:CDS 45.0%
TTAGTTGCGGCAAAAACGTC+CGG + tig0019249:182645-182664 Msa1371840:CDS 45.0%
! GTTGTCTTTGCTGTACTGTG+AGG + tig0019249:182697-182716 Msa1371840:CDS 45.0%
! TGTCTTTGCTGTACTGTGAG+GGG + tig0019249:182699-182718 Msa1371840:CDS 45.0%
!! GTTGGATGGTGTTGTCACTT+TGG + tig0019249:182964-182983 Msa1371840:CDS 45.0%
! TTGGTTGATGCGAAACATGC+TGG + tig0019249:182983-183002 Msa1371840:CDS 45.0%
CTTGACGAGGTTAAGCCAAA+AGG + tig0019249:183013-183032 Msa1371840:CDS 45.0%
GCTATAGCGCTATTGCATAG+CGG + tig0019249:183364-183383 Msa1371840:intron 45.0%
TTGGGAGATAGCAGCTATAG+TGG + tig0019249:183441-183460 Msa1371840:intron 45.0%
!!! CCGTTATGGAATTTTGGGGT+CGG - tig0019249:183726-183745 None:intergenic 45.0%
CCGACCCCAAAATTCCATAA+CGG + tig0019249:183723-183742 Msa1371840:intron 45.0%
CGACCCCAAAATTCCATAAC+GGG + tig0019249:183724-183743 Msa1371840:intron 45.0%
ACTGTGACTGACAAGAAGAG+GGG + tig0019249:183819-183838 Msa1371840:intron 45.0%
TCAATAGCAGCAGAGCAGTT+TGG - tig0019249:183988-184007 None:intergenic 45.0%
ACTATATTGCAGTATGGCCC+CGG + tig0019249:184012-184031 Msa1371840:intron 45.0%
ATGCATAGAAAGACCAAGCC+GGG - tig0019249:184033-184052 None:intergenic 45.0%
GATGCATAGAAAGACCAAGC+CGG - tig0019249:184034-184053 None:intergenic 45.0%
!! AGCAGAGCATTTTGGTGTAG+TGG - tig0019249:184586-184605 None:intergenic 45.0%
!! CTGAAATATGTAGCGGGCTA+TGG + tig0019249:184689-184708 Msa1371840:intron 45.0%
TTGCACCAGACTGATCTTGT+TGG + tig0019249:185026-185045 Msa1371840:intron 45.0%
ATTCGCCAACAAGATCAGTC+TGG - tig0019249:185034-185053 None:intergenic 45.0%
ACATCACTTCTTTGGTCCAG+CGG + tig0019249:185057-185076 Msa1371840:CDS 45.0%
!! TTCTTTGGTCCAGCGGATTA+GGG + tig0019249:185064-185083 Msa1371840:CDS 45.0%
!! TGGCCAGGCTGTTTATTTTC+TGG - tig0019249:185193-185212 None:intergenic 45.0%
ACAGCCTGGCCAATTTAAAG+AGG + tig0019249:185201-185220 Msa1371840:CDS 45.0%
CCTGGCCAATTTAAAGAGGA+CGG + tig0019249:185205-185224 Msa1371840:CDS 45.0%
AAAGAGGACGGAGTATGGAA+AGG + tig0019249:185217-185236 Msa1371840:CDS 45.0%
GGAGTATGGAAAGGTGAACT+TGG + tig0019249:185226-185245 Msa1371840:CDS 45.0%
! TGGCATTGGAGGCTTTGATT+TGG + tig0019249:185259-185278 Msa1371840:CDS 45.0%
!! TTGGAGGCTTTGATTTGGAG+AGG + tig0019249:185264-185283 Msa1371840:CDS 45.0%
CAAAGCAAGGCAGTTGACAA+GGG - tig0019249:185617-185636 None:intergenic 45.0%
ACAAAGCAAGGCAGTTGACA+AGG - tig0019249:185618-185637 None:intergenic 45.0%
!! GAGAGCGCTGTTAATGATGA+AGG + tig0019249:185762-185781 Msa1371840:CDS 45.0%
ATGGTCATGGTCATGGCTAT+GGG - tig0019249:185808-185827 None:intergenic 45.0%
! GATGATGGTGTTCATGGTCA+TGG - tig0019249:185821-185840 None:intergenic 45.0%
!! AATCTTCATGGTGATGGTGG+TGG - tig0019249:185851-185870 None:intergenic 45.0%
!! GTGAATCTTCATGGTGATGG+TGG - tig0019249:185854-185873 None:intergenic 45.0%
GATTCACATGACCACAAGCA+TGG + tig0019249:185867-185886 Msa1371840:CDS 45.0%
CATGATCATAGTCACGATCC+TGG + tig0019249:186253-186272 Msa1371840:CDS 45.0%
! TCAGTGAGCATAGTTTGCGA+AGG + tig0019249:186283-186302 Msa1371840:CDS 45.0%
CTTCGTTGGCATTTATGTGC+TGG + tig0019249:186435-186454 Msa1371840:intron 45.0%
CTATAGGCTAACATGTGGCT+TGG + tig0019249:186480-186499 Msa1371840:intron 45.0%
!! GTGGCTTGGTACCTTATTGA+TGG + tig0019249:186494-186513 Msa1371840:CDS 45.0%
AAGCGGTGTTTGTGATTCAG+AGG + tig0019249:186676-186695 Msa1371840:intron 45.0%
TTGTTTGTCCTTGGCTCATC+TGG - tig0019249:186816-186835 None:intergenic 45.0%
AGGGAAGAACTTGAATGCTG+AGG + tig0019249:186848-186867 Msa1371840:CDS 45.0%
! GGGTTTGGGTTTGCGATAAG+CGG - tig0019249:182118-182137 None:intergenic 50.0%
GGTGGAAAGAAGAGTGGTGA+AGG - tig0019249:182139-182158 None:intergenic 50.0%
!! GGTGTTGGTGGAAAGAAGAG+TGG - tig0019249:182145-182164 None:intergenic 50.0%
GAGATGAGGTGGATGATGAG+AGG - tig0019249:182257-182276 None:intergenic 50.0%
AATAACGGTGGAGACGTCGT+CGG - tig0019249:182301-182320 None:intergenic 50.0%
!! TGATGATGGTGGCAGGAATG+CGG - tig0019249:182335-182354 None:intergenic 50.0%
ATTCCTGCCACCATCATCAC+CGG + tig0019249:182336-182355 Msa1371840:CDS 50.0%
!! GAGAAAACCGGTGATGATGG+TGG - tig0019249:182346-182365 None:intergenic 50.0%
ACCGAGAAAACCGGTGATGA+TGG - tig0019249:182349-182368 None:intergenic 50.0%
!!! ATCACCGGTTTTCTCGGTTC+CGG + tig0019249:182351-182370 Msa1371840:CDS 50.0%
CATATTCTCACAGCGGAGCA+TGG + tig0019249:182478-182497 Msa1371840:CDS 50.0%
!! TGCTGGTTTGCATCTTGACG+AGG + tig0019249:183000-183019 Msa1371840:CDS 50.0%
CGAGGTTAAGCCAAAAGGTG+TGG + tig0019249:183018-183037 Msa1371840:CDS 50.0%
! GCCAAAAGGTGTGGTCAATG+AGG + tig0019249:183027-183046 Msa1371840:CDS 50.0%
! GCCTCATTGACCACACCTTT+TGG - tig0019249:183031-183050 None:intergenic 50.0%
! TCCATAACGGGATAGCAGGA+TGG + tig0019249:183736-183755 Msa1371840:intron 50.0%
CTGTGACTGACAAGAAGAGG+GGG + tig0019249:183820-183839 Msa1371840:intron 50.0%
!! AGTTTGGTGATGCGGTGAGA+TGG - tig0019249:183972-183991 None:intergenic 50.0%
!! AGCAGAGCAGTTTGGTGATG+CGG - tig0019249:183980-183999 None:intergenic 50.0%
TGCATAGAAAGACCAAGCCG+GGG - tig0019249:184032-184051 None:intergenic 50.0%
CTGAACTACATAGTGCGCTG+TGG + tig0019249:184075-184094 Msa1371840:intron 50.0%
CGCCGCGACAACTATTGTTT+CGG + tig0019249:184539-184558 Msa1371840:intron 50.0%
GGCCGAAACAATAGTTGTCG+CGG - tig0019249:184544-184563 None:intergenic 50.0%
!! TTTTGGTGTAGTGGCCGCAA+CGG - tig0019249:184577-184596 None:intergenic 50.0%
! CTTCTTTGGTCCAGCGGATT+AGG + tig0019249:185063-185082 Msa1371840:CDS 50.0%
AGACACTAACCCTAATCCGC+TGG - tig0019249:185076-185095 None:intergenic 50.0%
CCGTCCTCTTTAAATTGGCC+AGG - tig0019249:185208-185227 None:intergenic 50.0%
CATGGTCATGGTCATGGCTA+TGG - tig0019249:185809-185828 None:intergenic 50.0%
GGTGTTCATGGTCATGGTCA+TGG - tig0019249:185815-185834 None:intergenic 50.0%
! GGTGGTGGTGATCATGATGA+TGG - tig0019249:185836-185855 None:intergenic 50.0%
ATGCTCACTGATGAAACGCC+AGG - tig0019249:186274-186293 None:intergenic 50.0%
AAGGTTCACCGGAAAGGTTG+TGG + tig0019249:186787-186806 Msa1371840:CDS 50.0%
GCAGGAATGCGGTTATCAGG+TGG - tig0019249:182324-182343 None:intergenic 55.0%
GTGGCAGGAATGCGGTTATC+AGG - tig0019249:182327-182346 None:intergenic 55.0%
!! AAACCGGTGATGATGGTGGC+AGG - tig0019249:182342-182361 None:intergenic 55.0%
CTTGCCGGAACCGAGAAAAC+CGG - tig0019249:182358-182377 None:intergenic 55.0%
AAGGTCTGGATTATCGGCGC+CGG - tig0019249:182911-182930 None:intergenic 55.0%
GCCATCCTGCTATCCCGTTA+TGG - tig0019249:183740-183759 None:intergenic 55.0%
CAATAGTTGTCGCGGCGAGA+TGG - tig0019249:184536-184555 None:intergenic 55.0%
GGCCACTATAGCTTCCGTTG+CGG + tig0019249:184560-184579 Msa1371840:intron 55.0%
TCTGGCTGCCACAACCTTTC+CGG - tig0019249:186798-186817 None:intergenic 55.0%
! GGTTTGAGGCGGAGATGAGG+TGG - tig0019249:182268-182287 None:intergenic 60.0%
! GGTGGTTTGAGGCGGAGATG+AGG - tig0019249:182271-182290 None:intergenic 60.0%
GAGTCGTCGGTGGTTTGAGG+CGG - tig0019249:182279-182298 None:intergenic 60.0%
TCGGAGTCGTCGGTGGTTTG+AGG - tig0019249:182282-182301 None:intergenic 60.0%
! CGGTTTTCTCGGTTCCGGCA+AGG + tig0019249:182356-182375 Msa1371840:CDS 60.0%
ATTGCAGTATGGCCCCGGCT+TGG + tig0019249:184017-184036 Msa1371840:intron 60.0%
GGCCGCAACGGAAGCTATAG+TGG - tig0019249:184565-184584 None:intergenic 60.0%
TGTGGCAGCCAGATGAGCCA+AGG + tig0019249:186805-186824 Msa1371840:CDS 60.0%
GGAGACGTCGTCGGAGTCGT+CGG - tig0019249:182292-182311 None:intergenic 65.0%
GACGTCGTCGGAGTCGTCGG+TGG - tig0019249:182289-182308 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019249 gene 181965 187165 181965 ID=Msa1371840;Name=Msa1371840
tig0019249 mRNA 181965 187165 181965 ID=Msa1371840-mRNA-1;Parent=Msa1371840;Name=Msa1371840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=107|1|1|1|1|1|10|260|449
tig0019249 exon 181965 182377 181965 ID=Msa1371840-mRNA-1:exon:2377;Parent=Msa1371840-mRNA-1
tig0019249 exon 182463 182528 182463 ID=Msa1371840-mRNA-1:exon:2378;Parent=Msa1371840-mRNA-1
tig0019249 exon 182618 182798 182618 ID=Msa1371840-mRNA-1:exon:2379;Parent=Msa1371840-mRNA-1
tig0019249 exon 182897 183093 182897 ID=Msa1371840-mRNA-1:exon:2380;Parent=Msa1371840-mRNA-1
tig0019249 exon 185035 185085 185035 ID=Msa1371840-mRNA-1:exon:2381;Parent=Msa1371840-mRNA-1
tig0019249 exon 185194 185285 185194 ID=Msa1371840-mRNA-1:exon:2382;Parent=Msa1371840-mRNA-1
tig0019249 exon 185758 185888 185758 ID=Msa1371840-mRNA-1:exon:2383;Parent=Msa1371840-mRNA-1
tig0019249 exon 186242 186324 186242 ID=Msa1371840-mRNA-1:exon:2384;Parent=Msa1371840-mRNA-1
tig0019249 exon 186486 186590 186486 ID=Msa1371840-mRNA-1:exon:2385;Parent=Msa1371840-mRNA-1
tig0019249 exon 186768 187165 186768 ID=Msa1371840-mRNA-1:exon:2386;Parent=Msa1371840-mRNA-1
tig0019249 five_prime_UTR 181965 182071 181965 ID=Msa1371840-mRNA-1:five_prime_utr;Parent=Msa1371840-mRNA-1
tig0019249 CDS 182072 182377 182072 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 182463 182528 182463 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 182618 182798 182618 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 182897 183093 182897 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 185035 185085 185035 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 185194 185285 185194 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 185758 185888 185758 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 186242 186324 186242 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 186486 186590 186486 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 CDS 186768 186905 186768 ID=Msa1371840-mRNA-1:cds;Parent=Msa1371840-mRNA-1
tig0019249 three_prime_UTR 186906 187165 186906 ID=Msa1371840-mRNA-1:three_prime_utr;Parent=Msa1371840-mRNA-1
Gene Sequence

>Msa1371840

ATGGCGTTTTGTTTCACTGAACTTGCTTCAAGCTTATTTGGCGCCGCTTATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGACAACACTTCTGAATCATATTCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGTCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACTTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACTATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGACTGATCTTGTTGGCGAATCAGACATCACTTCTTTGGTCCAGCGGATTAGGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCAGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAAATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>Msa1371840

MAFCFTELASSLFGAAYRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTSGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGESDITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL*