AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623270 MtrunA17_Chr1g0212851 99.109 449 4 0 1 449 1 449 0.0 915
Msa0623270 MtrunA17_Chr8g0369371 59.916 237 83 4 21 253 2 230 6.95e-89 270
Msa0623270 MtrunA17_Chr5g0418911 37.234 376 192 7 83 447 24 366 2.18e-73 235
Msa0623270 MtrunA17_Chr8g0369381 43.820 178 81 1 272 449 1 159 5.42e-42 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623270 AT1G80480.1 78.663 389 76 2 61 449 63 444 0.0 575
Msa0623270 AT1G15730.1 71.635 416 111 3 36 449 38 448 0.0 573
Msa0623270 AT1G26520.1 37.602 367 185 6 89 447 42 372 4.41e-76 242

Find 130 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGCTTCAAGCTTATT+TGG 0.162746 4_3:-449092 Msa0623270:CDS
CTTCTTTGGTCCAGCGGATT+AGG 0.207261 4_3:-446117 Msa0623270:CDS
ATGGTCAAATTTGCCTTTCT+TGG 0.221608 4_3:+448425 None:intergenic
ATACTCCGTCCTCTTTAAAT+TGG 0.236187 4_3:+445970 None:intergenic
GAATGAAAGATTTGTCTTTC+AGG 0.236233 4_3:-444644 Msa0623270:intron
GTGAACTTGGATTATGTTCT+TGG 0.237961 4_3:-445941 Msa0623270:CDS
TCTGGCTGCCACAACCTTTC+CGG 0.245017 4_3:+444418 None:intergenic
CGAATCAGACATCACTTCTT+TGG 0.265430 4_3:-446131 Msa0623270:CDS
TTGTTTGTCCTTGGCTCATC+TGG 0.268152 4_3:+444400 None:intergenic
GCCTCATTGACCACACCTTT+TGG 0.295052 4_3:+448154 None:intergenic
CTACGGAAGATTGTAGAAAT+TGG 0.299599 4_3:+448975 None:intergenic
AATAGTATCCTCAGCATAAA+AGG 0.305064 4_3:+448255 None:intergenic
TGATCGAATAATCGTAAATA+AGG 0.306250 4_3:-448110 Msa0623270:intron
AGAAGAGTGGTGAAGGGTTT+GGG 0.309735 4_3:+449053 None:intergenic
GAACTTGAATGCTGAGGAAT+TGG 0.310817 4_3:-444359 Msa0623270:CDS
AATTTAAAGAGGACGGAGTA+TGG 0.326999 4_3:-445968 Msa0623270:CDS
AAGAAGAGTGGTGAAGGGTT+TGG 0.330035 4_3:+449052 None:intergenic
TGGCATTGGAGGCTTTGATT+TGG 0.346009 4_3:-445921 Msa0623270:CDS
GCTAAACCTTGTTGTTTACT+TGG 0.358930 4_3:-449143 Msa0623270:five_prime_UTR
TTCTTTGGTCCAGCGGATTA+GGG 0.359042 4_3:-446116 Msa0623270:intron
GCATAAAAGGTCTGGATTAT+CGG 0.359801 4_3:+448268 None:intergenic
TAATACAGGTTTGGCGAATC+CGG 0.361283 4_3:-448293 Msa0623270:intron
GTGGCAGGAATGCGGTTATC+AGG 0.367337 4_3:+448858 None:intergenic
GTCACTACGTTCCATCAATA+AGG 0.373389 4_3:+444708 None:intergenic
TTGGATTATGTTCTTGGCAT+TGG 0.395925 4_3:-445935 Msa0623270:CDS
TTTGGTGAGATTGATATTGA+TGG 0.412472 4_3:-448564 Msa0623270:CDS
AGATGAAGGTATTCTAGAAA+TGG 0.416613 4_3:+444179 None:intergenic
AGAGGCGAGTGAGTTTGTTA+TGG 0.423350 4_3:+448946 None:intergenic
TTCACTATTCATATAGTAAG+TGG 0.425610 4_3:+444211 None:intergenic
ATACCTTCATCTTTCAATGA+AGG 0.428015 4_3:-444168 Msa0623270:three_prime_UTR
GAAATTGGAGATGAGTTTAA+CGG 0.433464 4_3:+448990 None:intergenic
CATGGTCATGGTCATGGCTA+TGG 0.434201 4_3:+445374 None:intergenic
GTGGCTTGGTACCTTATTGA+TGG 0.439152 4_3:-444719 Msa0623270:CDS
AAATGATGATGATACCTTGC+CGG 0.444794 4_3:+448812 None:intergenic
GGAGTTCATGACATATTTCA+AGG 0.445771 4_3:-444445 Msa0623270:CDS
AACGTAGTGACGACATTTAT+AGG 0.447587 4_3:-444696 Msa0623270:CDS
TATCCTCAGCATAAAAGGTC+TGG 0.451814 4_3:+448260 None:intergenic
CCGTCCTCTTTAAATTGGCC+AGG 0.458430 4_3:+445975 None:intergenic
TGTGGTCATGTGAATCTTCA+TGG 0.466615 4_3:+445320 None:intergenic
GAATGCTGAGGAATTGGAAA+AGG 0.468936 4_3:-444353 Msa0623270:CDS
GATCATGATGATGGTGTTCA+TGG 0.472248 4_3:+445356 None:intergenic
AAAGGTCTTCTATCTGTTCA+AGG 0.474112 4_3:-444670 Msa0623270:CDS
TTGTCTTTGCTGTACTGTGA+GGG 0.479297 4_3:-448484 Msa0623270:CDS
CATATTGTTATTGAGACTAC+TGG 0.484719 4_3:-448405 Msa0623270:intron
TTGCACCAGACTGATCTTGT+TGG 0.485087 4_3:-446154 Msa0623270:intron
CAGTAGTCTCAATAACAATA+TGG 0.488237 4_3:+448406 None:intergenic
ATGGTCATGGTCATGGCTAT+GGG 0.492078 4_3:+445375 None:intergenic
CTATAGGCTAACATGTGGCT+TGG 0.493336 4_3:-444733 Msa0623270:intron
GATTATGTTCTTGGCATTGG+AGG 0.493460 4_3:-445932 Msa0623270:CDS
GAATTAGTCACTTCCAAGAA+AGG 0.495832 4_3:-448438 Msa0623270:CDS
GAAACACGTGTGAAATCCAT+TGG 0.495998 4_3:+444062 None:intergenic
ACCGAGAAAACCGGTGATGA+TGG 0.498944 4_3:+448836 None:intergenic
GAACCTTCATTGAAAGATGA+AGG 0.501399 4_3:+444165 None:intergenic
TTTGGTATTTCAGTTCATGA+TGG 0.501956 4_3:+444088 None:intergenic
TTCTTAGTATCACAGCAAAC+AGG 0.504205 4_3:+444321 None:intergenic
TACATTCACTAGTTAGCCAC+GGG 0.506381 4_3:+449205 None:intergenic
GGAGTATGGAAAGGTGAACT+TGG 0.507746 4_3:-445954 Msa0623270:CDS
AATTGCGGTTATTGAAAATG+AGG 0.508358 4_3:-448675 Msa0623270:intron
AATGCTGAGGAATTGGAAAA+GGG 0.512342 4_3:-444352 Msa0623270:CDS
GTTGGATGGTGTTGTCACTT+TGG 0.513457 4_3:-448218 Msa0623270:CDS
TCACTATTCATATAGTAAGT+GGG 0.516115 4_3:+444212 None:intergenic
GTTTGTTATGGTTGTTACTA+CGG 0.516237 4_3:+448958 None:intergenic
TTTAATGAAGTCAAGTTGGA+TGG 0.519334 4_3:-448232 Msa0623270:CDS
TCGGAGTCGTCGGTGGTTTG+AGG 0.520426 4_3:+448903 None:intergenic
TGACATATTTCAAGGTTCAC+CGG 0.523489 4_3:-444437 Msa0623270:CDS
GGTGTTCATGGTCATGGTCA+TGG 0.528471 4_3:+445368 None:intergenic
GGAGACGTCGTCGGAGTCGT+CGG 0.528650 4_3:+448893 None:intergenic
CTTGCCGGAACCGAGAAAAC+CGG 0.529351 4_3:+448827 None:intergenic
AATCTTCATGGTGATGGTGG+TGG 0.536012 4_3:+445332 None:intergenic
TATTGATGGTTCTTTAGTTG+CGG 0.539178 4_3:-448550 Msa0623270:CDS
CTTGACGAGGTTAAGCCAAA+AGG 0.540274 4_3:-448169 Msa0623270:CDS
ATTCCTGCCACCATCATCAC+CGG 0.540312 4_3:-448846 Msa0623270:CDS
AAACCGGTGATGATGGTGGC+AGG 0.542945 4_3:+448843 None:intergenic
CATATTCTCACAGCGGAGCA+TGG 0.544248 4_3:-448704 Msa0623270:CDS
ATGCTCACTGATGAAACGCC+AGG 0.549059 4_3:+444942 None:intergenic
TTGGTTGATGCGAAACATGC+TGG 0.549484 4_3:-448199 Msa0623270:CDS
GCGGTTATCAGGTGGAATAA+CGG 0.551353 4_3:+448869 None:intergenic
CATGATCATAGTCACGATCC+TGG 0.552341 4_3:-444960 Msa0623270:CDS
GGTGGTGGTGATCATGATGA+TGG 0.553558 4_3:+445347 None:intergenic
GAGAGCGCTGTTAATGATGA+AGG 0.554591 4_3:-445418 Msa0623270:CDS
ATTCCAGAAAATAAACAGCC+TGG 0.556534 4_3:-445993 Msa0623270:intron
AAGGTTCACCGGAAAGGTTG+TGG 0.556980 4_3:-444426 Msa0623270:CDS
GACGACATTTATAGGATGAA+AGG 0.558665 4_3:-444688 Msa0623270:CDS
TATTTCAAGGTTCACCGGAA+AGG 0.560823 4_3:-444432 Msa0623270:CDS
GGGTTTGGGTTTGCGATAAG+CGG 0.562113 4_3:+449067 None:intergenic
CATGTGAATCTTCATGGTGA+TGG 0.566710 4_3:+445326 None:intergenic
GATATTATGTTGTTGAACAA+TGG 0.568349 4_3:-448507 Msa0623270:CDS
AGACACTAACCCTAATCCGC+TGG 0.576738 4_3:+446107 None:intergenic
CTACATTCACTAGTTAGCCA+CGG 0.580374 4_3:+449204 None:intergenic
AGCAAGTACTAACCTTCTCA+AGG 0.584526 4_3:+444898 None:intergenic
AAAGAGGACGGAGTATGGAA+AGG 0.586024 4_3:-445963 Msa0623270:CDS
GTGAATCTTCATGGTGATGG+TGG 0.586196 4_3:+445329 None:intergenic
TTGGAGGCTTTGATTTGGAG+AGG 0.586416 4_3:-445916 Msa0623270:intron
GGTGGAAAGAAGAGTGGTGA+AGG 0.586615 4_3:+449046 None:intergenic
TGCTGGTTTGCATCTTGACG+AGG 0.587527 4_3:-448182 Msa0623270:CDS
GGTTTGAGGCGGAGATGAGG+TGG 0.587638 4_3:+448917 None:intergenic
GGTGTTGGTGGAAAGAAGAG+TGG 0.592017 4_3:+449040 None:intergenic
CAACATAATATCTTCAGCAC+CGG 0.592357 4_3:+448518 None:intergenic
TTCAGTGAAACAAAACGCCA+TGG 0.593485 4_3:+449112 None:intergenic
ACAGCCTGGCCAATTTAAAG+AGG 0.594420 4_3:-445979 Msa0623270:CDS
GCCAAAAGGTGTGGTCAATG+AGG 0.599909 4_3:-448155 Msa0623270:CDS
AAATTTAGGTACCATGCTTG+TGG 0.601243 4_3:+445302 None:intergenic
GTTGTCTTTGCTGTACTGTG+AGG 0.604741 4_3:-448485 Msa0623270:CDS
GACGTCGTCGGAGTCGTCGG+TGG 0.608943 4_3:+448896 None:intergenic
GGTGGTTTGAGGCGGAGATG+AGG 0.610253 4_3:+448914 None:intergenic
GATGATGGTGTTCATGGTCA+TGG 0.610283 4_3:+445362 None:intergenic
AGGGAAGAACTTGAATGCTG+AGG 0.611753 4_3:-444365 Msa0623270:CDS
GTGGAAAGAAGAGTGGTGAA+GGG 0.612512 4_3:+449047 None:intergenic
ACATCACTTCTTTGGTCCAG+CGG 0.614631 4_3:-446123 Msa0623270:CDS
TGTCTTTGCTGTACTGTGAG+GGG 0.617492 4_3:-448483 Msa0623270:CDS
AAGGTCTGGATTATCGGCGC+CGG 0.617720 4_3:+448274 None:intergenic
GCAGGAATGCGGTTATCAGG+TGG 0.618572 4_3:+448861 None:intergenic
CCTGGCCAATTTAAAGAGGA+CGG 0.624870 4_3:-445975 Msa0623270:CDS
TCAGTGAGCATAGTTTGCGA+AGG 0.626638 4_3:-444930 Msa0623270:CDS
GAGTCGTCGGTGGTTTGAGG+CGG 0.627298 4_3:+448906 None:intergenic
AGGAAACTTAGACCTTGAGA+AGG 0.627667 4_3:-444910 Msa0623270:intron
GATTCACATGACCACAAGCA+TGG 0.628690 4_3:-445313 Msa0623270:intron
TGTGGCAGCCAGATGAGCCA+AGG 0.631087 4_3:-444408 Msa0623270:CDS
GAGATGAGGTGGATGATGAG+AGG 0.634300 4_3:+448928 None:intergenic
CGAGGTTAAGCCAAAAGGTG+TGG 0.651456 4_3:-448164 Msa0623270:CDS
GAGAAAACCGGTGATGATGG+TGG 0.657464 4_3:+448839 None:intergenic
ATGCTGAGGAATTGGAAAAG+GGG 0.668894 4_3:-444351 Msa0623270:CDS
GTTATCAGGTGGAATAACGG+TGG 0.683146 4_3:+448872 None:intergenic
TGATGATGGTGGCAGGAATG+CGG 0.686059 4_3:+448850 None:intergenic
AATAACGGTGGAGACGTCGT+CGG 0.694029 4_3:+448884 None:intergenic
GGAGCATGGAAAACGAATTG+CGG 0.698183 4_3:-448690 Msa0623270:CDS
ATTCAGATATCATTCTAACA+AGG 0.703033 4_3:+448457 None:intergenic
AATGTTCCAAGTAAACAACA+AGG 0.718876 4_3:+449137 None:intergenic
TCTGAATCATATTCTCACAG+CGG 0.771767 4_3:-448711 Msa0623270:CDS
ACATTCACTAGTTAGCCACG+GGG 0.817894 4_3:+449206 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATAAAAAT+AGG + chr4_3:448111-448130 None:intergenic 0.0%
!!! AACTTATTTTTATTTAAGAA+TGG - chr4_3:445727-445746 Msa0623270:intron 10.0%
!!! TCTTAAGTTTTTTTTTTTTT+TGG - chr4_3:446023-446042 Msa0623270:intron 10.0%
!!! AAGTAAAATAAGATATTTTT+TGG + chr4_3:446379-446398 None:intergenic 10.0%
!!! ATCTAATTTTATTATTTGAA+TGG - chr4_3:448144-448163 Msa0623270:CDS 10.0%
!!! TTTTTCATTGATGAAAAATA+TGG - chr4_3:445242-445261 Msa0623270:intron 15.0%
!! AAACTTAAGATTTAAATGTT+GGG + chr4_3:446013-446032 None:intergenic 15.0%
!! AAAACTTAAGATTTAAATGT+TGG + chr4_3:446014-446033 None:intergenic 15.0%
!!! ATATATTTTATGAAACTGTA+TGG - chr4_3:446852-446871 Msa0623270:intron 15.0%
!!! TTTTTCTTAAACAATTGAAA+AGG + chr4_3:447421-447440 None:intergenic 15.0%
!!! TTTTCAATTGTTTAAGAAAA+AGG - chr4_3:447420-447439 Msa0623270:intron 15.0%
!!! TAATTTTATTATTTGAATGG+TGG - chr4_3:448147-448166 Msa0623270:CDS 15.0%
!!! ATTAATTTGTCTTATTCATT+TGG - chr4_3:448437-448456 Msa0623270:CDS 15.0%
!! AGCATTAACATAAAAAATAA+AGG + chr4_3:448478-448497 None:intergenic 15.0%
!!! ATGAATAGTTCTTTTGATTT+TGG + chr4_3:444272-444291 None:intergenic 20.0%
!! TTGAAATGATTGAATTGAAA+TGG + chr4_3:444517-444536 None:intergenic 20.0%
!! TAAAATTGAACTGCTTATTA+GGG - chr4_3:444939-444958 Msa0623270:CDS 20.0%
!!! TATTTTTAATGAAGTCAAGT+TGG - chr4_3:445052-445071 Msa0623270:intron 20.0%
!! GCTAATTTATACTTATTACA+GGG - chr4_3:445209-445228 Msa0623270:intron 20.0%
!! TAACTAAATAATGTACAGTA+TGG - chr4_3:445308-445327 Msa0623270:intron 20.0%
!! ATAATTCAAAATTCGCTATA+TGG + chr4_3:445352-445371 None:intergenic 20.0%
!! AAAAATTCTACATCAAGTTA+TGG - chr4_3:445375-445394 Msa0623270:CDS 20.0%
!! TGTATGAAAGTTTCAAATAA+CGG + chr4_3:445868-445887 None:intergenic 20.0%
!! TAAAAGTTTATAGATGTTCA+TGG + chr4_3:446404-446423 None:intergenic 20.0%
!!! TGAACATCTATAAACTTTTA+AGG - chr4_3:446404-446423 Msa0623270:intron 20.0%
!! TCTCAGTTAAAATAAGTTTA+TGG + chr4_3:446449-446468 None:intergenic 20.0%
!!! TAAATCTTAAGGGAATTTTT+TGG - chr4_3:446589-446608 Msa0623270:intron 20.0%
!!! GAATTTTCAATTTCATTATG+AGG - chr4_3:446611-446630 Msa0623270:intron 20.0%
!! TAAAAGCTTATAGATGTTAA+TGG + chr4_3:447013-447032 None:intergenic 20.0%
!!! TTAACATCTATAAGCTTTTA+AGG - chr4_3:447013-447032 Msa0623270:intron 20.0%
!!! AGCCATAAATTTATTTTAAC+TGG - chr4_3:447053-447072 Msa0623270:intron 20.0%
!!! GCCATAAATTTATTTTAACT+GGG - chr4_3:447054-447073 Msa0623270:intron 20.0%
!! TCCCAGTTAAAATAAATTTA+TGG + chr4_3:447058-447077 None:intergenic 20.0%
!!! CAAAAGTTCTAAAAGTTATA+TGG + chr4_3:447583-447602 None:intergenic 20.0%
!!! CATATAACTTTTAGAACTTT+TGG - chr4_3:447581-447600 Msa0623270:intron 20.0%
!! TGACAAATCTTATCAAAAAT+AGG + chr4_3:448076-448095 None:intergenic 20.0%
!! TTTCATAAGGACAAATTATA+AGG - chr4_3:448214-448233 Msa0623270:CDS 20.0%
!!! AACTAACATACTTTTTCTAT+AGG - chr4_3:448539-448558 Msa0623270:CDS 20.0%
!! TGAAAACAACAACAATAAAT+AGG + chr4_3:448691-448710 None:intergenic 20.0%
!!! ACAAACAAAATTGTTTTCAT+AGG - chr4_3:448903-448922 Msa0623270:CDS 20.0%
!!! CAAACAAAATTGTTTTCATA+GGG - chr4_3:448904-448923 Msa0623270:CDS 20.0%
!! TCAAAAAGAATAAAGGATTA+AGG + chr4_3:449007-449026 None:intergenic 20.0%
!! TGAACAATCAAAAAGAATAA+AGG + chr4_3:449014-449033 None:intergenic 20.0%
! TGCATATGATTATTGTAGTT+TGG - chr4_3:444706-444725 Msa0623270:CDS 25.0%
! GATATTATGTTGTTGAACAA+TGG - chr4_3:444781-444800 Msa0623270:intron 25.0%
! ATTCAGATATCATTCTAACA+AGG + chr4_3:444834-444853 None:intergenic 25.0%
! GTAAAATTGAACTGCTTATT+AGG - chr4_3:444938-444957 Msa0623270:CDS 25.0%
! TTGACTGTTTGTATTAATAC+AGG - chr4_3:444981-445000 Msa0623270:intron 25.0%
! TGTTTGTATTAATACAGGTT+TGG - chr4_3:444986-445005 Msa0623270:intron 25.0%
! TGATCGAATAATCGTAAATA+AGG - chr4_3:445178-445197 Msa0623270:intron 25.0%
!! AATCGTAAATAAGGTATTCA+TGG - chr4_3:445187-445206 Msa0623270:intron 25.0%
! GGCTAATTTATACTTATTAC+AGG - chr4_3:445208-445227 Msa0623270:intron 25.0%
! AATTTATACTTATTACAGGG+TGG - chr4_3:445212-445231 Msa0623270:intron 25.0%
! AATAATGTACAGTATGGTTA+TGG - chr4_3:445314-445333 Msa0623270:CDS 25.0%
! ATCTAGTACAATCAAAATGT+TGG - chr4_3:445528-445547 Msa0623270:intron 25.0%
! TCTAGTACAATCAAAATGTT+GGG - chr4_3:445529-445548 Msa0623270:intron 25.0%
!!! TTTAAGAATGGCTTTTAGTT+TGG - chr4_3:445739-445758 Msa0623270:intron 25.0%
!!! TTAAGAATGGCTTTTAGTTT+GGG - chr4_3:445740-445759 Msa0623270:intron 25.0%
!! TTAGTTTGGGTTATAAAACA+TGG - chr4_3:445753-445772 Msa0623270:intron 25.0%
! GAAAATAGTGTATCATTCTT+AGG - chr4_3:445784-445803 Msa0623270:intron 25.0%
!! GAAAATGACAGTATTGTTTT+GGG - chr4_3:445948-445967 Msa0623270:CDS 25.0%
!!! TATTGTTTTGGGATTTACAA+TGG - chr4_3:445959-445978 Msa0623270:CDS 25.0%
! GAATTTCCTATCTAATTATG+AGG - chr4_3:446045-446064 Msa0623270:intron 25.0%
! AAATTCTCAAGAAATGCTTA+TGG - chr4_3:446258-446277 Msa0623270:intron 25.0%
! ACAGTGAAGATTTAAATGTT+GGG + chr4_3:446512-446531 None:intergenic 25.0%
! AACAGTGAAGATTTAAATGT+TGG + chr4_3:446513-446532 None:intergenic 25.0%
!! CATTTAAATCTTCACTGTTT+TGG - chr4_3:446514-446533 Msa0623270:intron 25.0%
! TCCCTTAAGATTTAAATGTT+GGG + chr4_3:446583-446602 None:intergenic 25.0%
! TTCCCTTAAGATTTAAATGT+TGG + chr4_3:446584-446603 None:intergenic 25.0%
! TATTGAACTGAAATATGTAG+CGG - chr4_3:446790-446809 Msa0623270:intron 25.0%
! AGTTAGACATTAATACAAAG+TGG - chr4_3:447088-447107 Msa0623270:intron 25.0%
! TCTTAAACAATTGAAAAGGA+AGG + chr4_3:447417-447436 None:intergenic 25.0%
! AATGTAAGTTTACTTCTTCT+CGG - chr4_3:447451-447470 Msa0623270:intron 25.0%
!!! ATGAGAATGATTTTAGCATA+TGG + chr4_3:447554-447573 None:intergenic 25.0%
!!! AGTTCTAAAAGTTATATGGT+AGG + chr4_3:447579-447598 None:intergenic 25.0%
! ACTCAACAATTAGATACATT+AGG + chr4_3:447619-447638 None:intergenic 25.0%
! TGGGTATTTAGATATTTCTT+CGG - chr4_3:447769-447788 Msa0623270:intron 25.0%
!! ATGTCTTCTTGATCTTTTTA+AGG - chr4_3:447844-447863 Msa0623270:intron 25.0%
! AAACAAGAAAGGATTGAATT+GGG + chr4_3:448197-448216 None:intergenic 25.0%
!!! AAAACAATTTTGTTTGTCCT+TGG + chr4_3:448900-448919 None:intergenic 25.0%
! TCACTATTCATATAGTAAGT+GGG + chr4_3:449079-449098 None:intergenic 25.0%
! TTCACTATTCATATAGTAAG+TGG + chr4_3:449080-449099 None:intergenic 25.0%
! CTAGTGAATGTAGTAGTTTT+TGG - chr4_3:444094-444113 Msa0623270:three_prime_UTR 30.0%
AATGTTCCAAGTAAACAACA+AGG + chr4_3:444154-444173 None:intergenic 30.0%
! TTTACTTGGAACATTTTCCA+TGG - chr4_3:444159-444178 Msa0623270:three_prime_UTR 30.0%
!!! AGTTCTTTTGATTTTGGTGT+TGG + chr4_3:444266-444285 None:intergenic 30.0%
GAAATTGGAGATGAGTTTAA+CGG + chr4_3:444301-444320 None:intergenic 30.0%
!! GTTTGTTATGGTTGTTACTA+CGG + chr4_3:444333-444352 None:intergenic 30.0%
AATTGCGGTTATTGAAAATG+AGG - chr4_3:444613-444632 Msa0623270:intron 30.0%
TTTGGTGAGATTGATATTGA+TGG - chr4_3:444724-444743 Msa0623270:CDS 30.0%
! TATTGATGGTTCTTTAGTTG+CGG - chr4_3:444738-444757 Msa0623270:intron 30.0%
CAGTAGTCTCAATAACAATA+TGG + chr4_3:444885-444904 None:intergenic 30.0%
! CATATTGTTATTGAGACTAC+TGG - chr4_3:444883-444902 Msa0623270:intron 30.0%
AATAGTATCCTCAGCATAAA+AGG + chr4_3:445036-445055 None:intergenic 30.0%
!! TTTAATGAAGTCAAGTTGGA+TGG - chr4_3:445056-445075 Msa0623270:intron 30.0%
! AATATGGATTGTCGAGAAAA+TGG - chr4_3:445258-445277 Msa0623270:intron 30.0%
! ATATGGATTGTCGAGAAAAT+GGG - chr4_3:445259-445278 Msa0623270:intron 30.0%
TTCAAAATTCGCTATATGGA+AGG + chr4_3:445348-445367 None:intergenic 30.0%
! GGAAAATGACAGTATTGTTT+TGG - chr4_3:445947-445966 Msa0623270:CDS 30.0%
GATTTAAATGTTGGGCTTTA+TGG + chr4_3:446005-446024 None:intergenic 30.0%
TGTGCAAGATATAGATTCTA+TGG - chr4_3:446222-446241 Msa0623270:intron 30.0%
AAAAAACATCTCATGTGAAG+TGG - chr4_3:446338-446357 Msa0623270:intron 30.0%
ATTTAAATGTTGGGGATTTG+AGG + chr4_3:446503-446522 None:intergenic 30.0%
CAGTGAAGATTTAAATGTTG+GGG + chr4_3:446511-446530 None:intergenic 30.0%
ATTTAAATGTTGGGGCTTTA+AGG + chr4_3:446574-446593 None:intergenic 30.0%
CCCTTAAGATTTAAATGTTG+GGG + chr4_3:446582-446601 None:intergenic 30.0%
CCCCAACATTTAAATCTTAA+GGG - chr4_3:446579-446598 Msa0623270:intron 30.0%
ATTAAATGCGTAGAAGAACT+AGG + chr4_3:446760-446779 None:intergenic 30.0%
ATTGAACTGAAATATGTAGC+GGG - chr4_3:446791-446810 Msa0623270:intron 30.0%
GAATTCTCAAGAAACACTTA+TGG - chr4_3:446878-446897 Msa0623270:intron 30.0%
GGAAGGAAACAAGAAAAAAA+AGG + chr4_3:447400-447419 None:intergenic 30.0%
AATAACTCGAGTATATGTAC+AGG + chr4_3:447515-447534 None:intergenic 30.0%
ATGTTTAGTCATAACCTCAT+GGG - chr4_3:447750-447769 Msa0623270:intron 30.0%
GAAATATCTAAATACCCATG+AGG + chr4_3:447767-447786 None:intergenic 30.0%
TCAACACACAAGACAAATTT+AGG + chr4_3:448003-448022 None:intergenic 30.0%
AGCAAATAGGTAAAAACTGT+TGG + chr4_3:448173-448192 None:intergenic 30.0%
GAAACAAGAAAGGATTGAAT+TGG + chr4_3:448198-448217 None:intergenic 30.0%
! CAATCCTTTCTTGTTTCATA+AGG - chr4_3:448201-448220 Msa0623270:CDS 30.0%
TTGTCCTTATGAAACAAGAA+AGG + chr4_3:448208-448227 None:intergenic 30.0%
!! TGTAGTTTTGCTATGAAGTA+AGG - chr4_3:448269-448288 Msa0623270:CDS 30.0%
!! GTAGTTTTGCTATGAAGTAA+GGG - chr4_3:448270-448289 Msa0623270:CDS 30.0%
TCTTATTCATTTGGATGCTT+GGG - chr4_3:448446-448465 Msa0623270:CDS 30.0%
! TTTTTCTATAGGCTAACATG+TGG - chr4_3:448550-448569 Msa0623270:CDS 30.0%
GAATGAAAGATTTGTCTTTC+AGG - chr4_3:448644-448663 Msa0623270:intron 30.0%
AGAAAAAAGCCATGCTTTAT+TGG + chr4_3:448816-448835 None:intergenic 30.0%
!! AGATGAAGGTATTCTAGAAA+TGG + chr4_3:449112-449131 None:intergenic 30.0%
ATACCTTCATCTTTCAATGA+AGG - chr4_3:449120-449139 Msa0623270:exon 30.0%
! TTTATGCAGTCACGATTTTA+GGG + chr4_3:449157-449176 None:intergenic 30.0%
! ATTTATGCAGTCACGATTTT+AGG + chr4_3:449158-449177 None:intergenic 30.0%
TTTGGTATTTCAGTTCATGA+TGG + chr4_3:449203-449222 None:intergenic 30.0%
CTGAAATACCAAAAATCCAA+TGG - chr4_3:449210-449229 Msa0623270:five_prime_UTR 30.0%
! TGTGAAATCCATTGGATTTT+TGG + chr4_3:449221-449240 None:intergenic 30.0%
!! GCTAAACCTTGTTGTTTACT+TGG - chr4_3:444145-444164 Msa0623270:three_prime_UTR 35.0%
! GAACTTGCTTCAAGCTTATT+TGG - chr4_3:444196-444215 Msa0623270:three_prime_UTR 35.0%
!!! TCTTTTGATTTTGGTGTTGG+TGG + chr4_3:444263-444282 None:intergenic 35.0%
CTACGGAAGATTGTAGAAAT+TGG + chr4_3:444316-444335 None:intergenic 35.0%
! AAATGATGATGATACCTTGC+CGG + chr4_3:444479-444498 None:intergenic 35.0%
TCTGAATCATATTCTCACAG+CGG - chr4_3:444577-444596 Msa0623270:intron 35.0%
CAACATAATATCTTCAGCAC+CGG + chr4_3:444773-444792 None:intergenic 35.0%
GAATTAGTCACTTCCAAGAA+AGG - chr4_3:444850-444869 Msa0623270:intron 35.0%
ATGGTCAAATTTGCCTTTCT+TGG + chr4_3:444866-444885 None:intergenic 35.0%
GCATAAAAGGTCTGGATTAT+CGG + chr4_3:445023-445042 None:intergenic 35.0%
! AATACTTTCTTTGTGCCGTT+TGG - chr4_3:445407-445426 Msa0623270:CDS 35.0%
TTGCGAGAAGTTAATCCAAA+CGG + chr4_3:445425-445444 None:intergenic 35.0%
TAACTTCTCGCAAATCACTT+CGG - chr4_3:445432-445451 Msa0623270:intron 35.0%
!! ACTTCGGTGTTGTTAAATAG+CGG - chr4_3:445448-445467 Msa0623270:intron 35.0%
TTGTACTAGATAGCATATCG+CGG + chr4_3:445519-445538 None:intergenic 35.0%
TTGCGAATAGCAGAAAACAA+CGG + chr4_3:445609-445628 None:intergenic 35.0%
TGACAACACTGAAACACTTA+TGG - chr4_3:445630-445649 Msa0623270:intron 35.0%
! TATCCCGTTATGGAATTTTG+GGG + chr4_3:445836-445855 None:intergenic 35.0%
! CTATCCCGTTATGGAATTTT+GGG + chr4_3:445837-445856 None:intergenic 35.0%
! TAAATGTTGGGCTTTATGGT+TGG + chr4_3:446001-446020 None:intergenic 35.0%
GACTACACTATATTGCAGTA+TGG - chr4_3:446112-446131 Msa0623270:intron 35.0%
ATAGATTCTATGGAACTGTC+TGG - chr4_3:446232-446251 Msa0623270:intron 35.0%
AGTTTATGGCTATTACTTGC+AGG + chr4_3:446435-446454 None:intergenic 35.0%
GCCCCAACATTTAAATCTTA+AGG - chr4_3:446578-446597 Msa0623270:intron 35.0%
ATTCCAGAAAATAAACAGCC+TGG - chr4_3:447295-447314 Msa0623270:intron 35.0%
ATACTCCGTCCTCTTTAAAT+TGG + chr4_3:447321-447340 None:intergenic 35.0%
AATTTAAAGAGGACGGAGTA+TGG - chr4_3:447320-447339 Msa0623270:intron 35.0%
GTGAACTTGGATTATGTTCT+TGG - chr4_3:447347-447366 Msa0623270:intron 35.0%
TTGGATTATGTTCTTGGCAT+TGG - chr4_3:447353-447372 Msa0623270:intron 35.0%
!! GAAAAATGTGAGTGCTACTT+TGG + chr4_3:447700-447719 None:intergenic 35.0%
CTAAACATGACAACAAAGCA+AGG + chr4_3:447738-447757 None:intergenic 35.0%
CATGTTTAGTCATAACCTCA+TGG - chr4_3:447749-447768 Msa0623270:intron 35.0%
GACATGCACATCATATATTC+AGG + chr4_3:447829-447848 None:intergenic 35.0%
AAATTTAGGTACCATGCTTG+TGG + chr4_3:447989-448008 None:intergenic 35.0%
GATTGAATTGGGAAGCAAAT+AGG + chr4_3:448186-448205 None:intergenic 35.0%
! GTCTTATTCATTTGGATGCT+TGG - chr4_3:448445-448464 Msa0623270:CDS 35.0%
CTTATTCATTTGGATGCTTG+GGG - chr4_3:448447-448466 Msa0623270:CDS 35.0%
TTATTCATTTGGATGCTTGG+GGG - chr4_3:448448-448467 Msa0623270:CDS 35.0%
AACGTAGTGACGACATTTAT+AGG - chr4_3:448592-448611 Msa0623270:intron 35.0%
GACGACATTTATAGGATGAA+AGG - chr4_3:448600-448619 Msa0623270:intron 35.0%
AAAGGTCTTCTATCTGTTCA+AGG - chr4_3:448618-448637 Msa0623270:intron 35.0%
!!! CATGGCTTTTTTCTGTAACA+GGG - chr4_3:448822-448841 Msa0623270:intron 35.0%
GGAGTTCATGACATATTTCA+AGG - chr4_3:448843-448862 Msa0623270:CDS 35.0%
TGACATATTTCAAGGTTCAC+CGG - chr4_3:448851-448870 Msa0623270:CDS 35.0%
AATGCTGAGGAATTGGAAAA+GGG - chr4_3:448936-448955 Msa0623270:CDS 35.0%
TTCTTAGTATCACAGCAAAC+AGG + chr4_3:448970-448989 None:intergenic 35.0%
GAACCTTCATTGAAAGATGA+AGG + chr4_3:449126-449145 None:intergenic 35.0%
TACATTCACTAGTTAGCCAC+GGG + chr4_3:444086-444105 None:intergenic 40.0%
CTACATTCACTAGTTAGCCA+CGG + chr4_3:444087-444106 None:intergenic 40.0%
TTCAGTGAAACAAAACGCCA+TGG + chr4_3:444179-444198 None:intergenic 40.0%
! TTGTCTTTGCTGTACTGTGA+GGG - chr4_3:444804-444823 Msa0623270:intron 40.0%
TAATACAGGTTTGGCGAATC+CGG - chr4_3:444995-445014 Msa0623270:intron 40.0%
! AATCCAGACCTTTTATGCTG+AGG - chr4_3:445025-445044 Msa0623270:intron 40.0%
TATCCTCAGCATAAAAGGTC+TGG + chr4_3:445031-445050 None:intergenic 40.0%
! GCTATCCCGTTATGGAATTT+TGG + chr4_3:445838-445857 None:intergenic 40.0%
! AAATTCCATAACGGGATAGC+AGG - chr4_3:445838-445857 Msa0623270:intron 40.0%
TAACTGTGACTGACAAGAAG+AGG - chr4_3:445923-445942 Msa0623270:CDS 40.0%
AACTGTGACTGACAAGAAGA+GGG - chr4_3:445924-445943 Msa0623270:CDS 40.0%
GCTGCACCTCATAATTAGAT+AGG + chr4_3:446054-446073 None:intergenic 40.0%
!! CATATAGCAGCAGAGCATTT+TGG + chr4_3:446702-446721 None:intergenic 40.0%
CAAAATGCTCTGCTGCTATA+TGG - chr4_3:446700-446719 Msa0623270:intron 40.0%
CGAATCAGACATCACTTCTT+TGG - chr4_3:447157-447176 Msa0623270:intron 40.0%
! GATTATGTTCTTGGCATTGG+AGG - chr4_3:447356-447375 Msa0623270:intron 40.0%
GCACATCATATATTCAGGCT+TGG + chr4_3:447824-447843 None:intergenic 40.0%
!! GATCATGATGATGGTGTTCA+TGG + chr4_3:447935-447954 None:intergenic 40.0%
CATGTGAATCTTCATGGTGA+TGG + chr4_3:447965-447984 None:intergenic 40.0%
TGTGGTCATGTGAATCTTCA+TGG + chr4_3:447971-447990 None:intergenic 40.0%
AGGAAACTTAGACCTTGAGA+AGG - chr4_3:448378-448397 Msa0623270:intron 40.0%
AGCAAGTACTAACCTTCTCA+AGG + chr4_3:448393-448412 None:intergenic 40.0%
CTGAAGCAAAAAGTCTTCGT+TGG - chr4_3:448496-448515 Msa0623270:CDS 40.0%
GTCACTACGTTCCATCAATA+AGG + chr4_3:448583-448602 None:intergenic 40.0%
TCAATTAAGCGACATGAGTC+AGG - chr4_3:448708-448727 Msa0623270:CDS 40.0%
CGAGACACATATAACACAAG+CGG - chr4_3:448734-448753 Msa0623270:intron 40.0%
TCAGTTTCGCCAATAAAGCA+TGG - chr4_3:448804-448823 Msa0623270:intron 40.0%
!!! GCATGGCTTTTTTCTGTAAC+AGG - chr4_3:448821-448840 Msa0623270:intron 40.0%
TATTTCAAGGTTCACCGGAA+AGG - chr4_3:448856-448875 Msa0623270:CDS 40.0%
GAACTTGAATGCTGAGGAAT+TGG - chr4_3:448929-448948 Msa0623270:CDS 40.0%
GAATGCTGAGGAATTGGAAA+AGG - chr4_3:448935-448954 Msa0623270:CDS 40.0%
ATGCTGAGGAATTGGAAAAG+GGG - chr4_3:448937-448956 Msa0623270:CDS 40.0%
ACATTCACTAGTTAGCCACG+GGG + chr4_3:444085-444104 None:intergenic 45.0%
AGAAGAGTGGTGAAGGGTTT+GGG + chr4_3:444238-444257 None:intergenic 45.0%
AAGAAGAGTGGTGAAGGGTT+TGG + chr4_3:444239-444258 None:intergenic 45.0%
GTGGAAAGAAGAGTGGTGAA+GGG + chr4_3:444244-444263 None:intergenic 45.0%
!! AGAGGCGAGTGAGTTTGTTA+TGG + chr4_3:444345-444364 None:intergenic 45.0%
GTTATCAGGTGGAATAACGG+TGG + chr4_3:444419-444438 None:intergenic 45.0%
GCGGTTATCAGGTGGAATAA+CGG + chr4_3:444422-444441 None:intergenic 45.0%
!!! ACCATCATCACCGGTTTTCT+CGG - chr4_3:444451-444470 Msa0623270:intron 45.0%
GGAGCATGGAAAACGAATTG+CGG - chr4_3:444598-444617 Msa0623270:intron 45.0%
TTAGTTGCGGCAAAAACGTC+CGG - chr4_3:444751-444770 Msa0623270:intron 45.0%
! GTTGTCTTTGCTGTACTGTG+AGG - chr4_3:444803-444822 Msa0623270:intron 45.0%
! TGTCTTTGCTGTACTGTGAG+GGG - chr4_3:444805-444824 Msa0623270:intron 45.0%
!! GTTGGATGGTGTTGTCACTT+TGG - chr4_3:445070-445089 Msa0623270:intron 45.0%
! TTGGTTGATGCGAAACATGC+TGG - chr4_3:445089-445108 Msa0623270:intron 45.0%
CTTGACGAGGTTAAGCCAAA+AGG - chr4_3:445119-445138 Msa0623270:intron 45.0%
GCTATAGCGCTATTGCATAG+CGG - chr4_3:445470-445489 Msa0623270:intron 45.0%
TTGGGAGATAGCAGCTATAG+TGG - chr4_3:445547-445566 Msa0623270:intron 45.0%
!!! CCGTTATGGAATTTTGGGGT+CGG + chr4_3:445832-445851 None:intergenic 45.0%
CCGACCCCAAAATTCCATAA+CGG - chr4_3:445829-445848 Msa0623270:intron 45.0%
CGACCCCAAAATTCCATAAC+GGG - chr4_3:445830-445849 Msa0623270:intron 45.0%
ACTGTGACTGACAAGAAGAG+GGG - chr4_3:445925-445944 Msa0623270:CDS 45.0%
TCAATAGCAGCAGAGCAGTT+TGG + chr4_3:446094-446113 None:intergenic 45.0%
ACTATATTGCAGTATGGCCC+CGG - chr4_3:446118-446137 Msa0623270:CDS 45.0%
ATGCATAGAAAGACCAAGCC+GGG + chr4_3:446139-446158 None:intergenic 45.0%
GATGCATAGAAAGACCAAGC+CGG + chr4_3:446140-446159 None:intergenic 45.0%
!! AGCAGAGCATTTTGGTGTAG+TGG + chr4_3:446694-446713 None:intergenic 45.0%
!! CTGAAATATGTAGCGGGCTA+TGG - chr4_3:446797-446816 Msa0623270:intron 45.0%
TTGCACCAGACTGATCTTGT+TGG - chr4_3:447134-447153 Msa0623270:intron 45.0%
ATTCGCCAACAAGATCAGTC+TGG + chr4_3:447142-447161 None:intergenic 45.0%
ACATCACTTCTTTGGTCCAG+CGG - chr4_3:447165-447184 Msa0623270:intron 45.0%
!! TTCTTTGGTCCAGCGGATTA+GGG - chr4_3:447172-447191 Msa0623270:intron 45.0%
!! TGGCCAGGCTGTTTATTTTC+TGG + chr4_3:447301-447320 None:intergenic 45.0%
ACAGCCTGGCCAATTTAAAG+AGG - chr4_3:447309-447328 Msa0623270:intron 45.0%
CCTGGCCAATTTAAAGAGGA+CGG - chr4_3:447313-447332 Msa0623270:intron 45.0%
AAAGAGGACGGAGTATGGAA+AGG - chr4_3:447325-447344 Msa0623270:intron 45.0%
GGAGTATGGAAAGGTGAACT+TGG - chr4_3:447334-447353 Msa0623270:intron 45.0%
! TGGCATTGGAGGCTTTGATT+TGG - chr4_3:447367-447386 Msa0623270:intron 45.0%
!! TTGGAGGCTTTGATTTGGAG+AGG - chr4_3:447372-447391 Msa0623270:intron 45.0%
CAAAGCAAGGCAGTTGACAA+GGG + chr4_3:447725-447744 None:intergenic 45.0%
ACAAAGCAAGGCAGTTGACA+AGG + chr4_3:447726-447745 None:intergenic 45.0%
!! GAGAGCGCTGTTAATGATGA+AGG - chr4_3:447870-447889 Msa0623270:intron 45.0%
ATGGTCATGGTCATGGCTAT+GGG + chr4_3:447916-447935 None:intergenic 45.0%
! GATGATGGTGTTCATGGTCA+TGG + chr4_3:447929-447948 None:intergenic 45.0%
!! AATCTTCATGGTGATGGTGG+TGG + chr4_3:447959-447978 None:intergenic 45.0%
!! GTGAATCTTCATGGTGATGG+TGG + chr4_3:447962-447981 None:intergenic 45.0%
GATTCACATGACCACAAGCA+TGG - chr4_3:447975-447994 Msa0623270:intron 45.0%
CATGATCATAGTCACGATCC+TGG - chr4_3:448328-448347 Msa0623270:intron 45.0%
! TCAGTGAGCATAGTTTGCGA+AGG - chr4_3:448358-448377 Msa0623270:intron 45.0%
CTTCGTTGGCATTTATGTGC+TGG - chr4_3:448510-448529 Msa0623270:CDS 45.0%
CTATAGGCTAACATGTGGCT+TGG - chr4_3:448555-448574 Msa0623270:CDS 45.0%
!! GTGGCTTGGTACCTTATTGA+TGG - chr4_3:448569-448588 Msa0623270:intron 45.0%
AAGCGGTGTTTGTGATTCAG+AGG - chr4_3:448751-448770 Msa0623270:intron 45.0%
TTGTTTGTCCTTGGCTCATC+TGG + chr4_3:448891-448910 None:intergenic 45.0%
AGGGAAGAACTTGAATGCTG+AGG - chr4_3:448923-448942 Msa0623270:CDS 45.0%
! GGGTTTGGGTTTGCGATAAG+CGG + chr4_3:444224-444243 None:intergenic 50.0%
GGTGGAAAGAAGAGTGGTGA+AGG + chr4_3:444245-444264 None:intergenic 50.0%
!! GGTGTTGGTGGAAAGAAGAG+TGG + chr4_3:444251-444270 None:intergenic 50.0%
GAGATGAGGTGGATGATGAG+AGG + chr4_3:444363-444382 None:intergenic 50.0%
AATAACGGTGGAGACGTCGT+CGG + chr4_3:444407-444426 None:intergenic 50.0%
!! TGATGATGGTGGCAGGAATG+CGG + chr4_3:444441-444460 None:intergenic 50.0%
ATTCCTGCCACCATCATCAC+CGG - chr4_3:444442-444461 Msa0623270:CDS 50.0%
!! GAGAAAACCGGTGATGATGG+TGG + chr4_3:444452-444471 None:intergenic 50.0%
ACCGAGAAAACCGGTGATGA+TGG + chr4_3:444455-444474 None:intergenic 50.0%
!!! ATCACCGGTTTTCTCGGTTC+CGG - chr4_3:444457-444476 Msa0623270:intron 50.0%
CATATTCTCACAGCGGAGCA+TGG - chr4_3:444584-444603 Msa0623270:intron 50.0%
!! TGCTGGTTTGCATCTTGACG+AGG - chr4_3:445106-445125 Msa0623270:intron 50.0%
CGAGGTTAAGCCAAAAGGTG+TGG - chr4_3:445124-445143 Msa0623270:intron 50.0%
! GCCAAAAGGTGTGGTCAATG+AGG - chr4_3:445133-445152 Msa0623270:intron 50.0%
! GCCTCATTGACCACACCTTT+TGG + chr4_3:445137-445156 None:intergenic 50.0%
! TCCATAACGGGATAGCAGGA+TGG - chr4_3:445842-445861 Msa0623270:intron 50.0%
CTGTGACTGACAAGAAGAGG+GGG - chr4_3:445926-445945 Msa0623270:CDS 50.0%
!! AGTTTGGTGATGCGGTGAGA+TGG + chr4_3:446078-446097 None:intergenic 50.0%
!! AGCAGAGCAGTTTGGTGATG+CGG + chr4_3:446086-446105 None:intergenic 50.0%
TGCATAGAAAGACCAAGCCG+GGG + chr4_3:446138-446157 None:intergenic 50.0%
CTGAACTACATAGTGCGCTG+TGG - chr4_3:446181-446200 Msa0623270:intron 50.0%
CGCCGCGACAACTATTGTTT+CGG - chr4_3:446647-446666 Msa0623270:intron 50.0%
GGCCGAAACAATAGTTGTCG+CGG + chr4_3:446652-446671 None:intergenic 50.0%
!! TTTTGGTGTAGTGGCCGCAA+CGG + chr4_3:446685-446704 None:intergenic 50.0%
! CTTCTTTGGTCCAGCGGATT+AGG - chr4_3:447171-447190 Msa0623270:intron 50.0%
AGACACTAACCCTAATCCGC+TGG + chr4_3:447184-447203 None:intergenic 50.0%
CCGTCCTCTTTAAATTGGCC+AGG + chr4_3:447316-447335 None:intergenic 50.0%
CATGGTCATGGTCATGGCTA+TGG + chr4_3:447917-447936 None:intergenic 50.0%
GGTGTTCATGGTCATGGTCA+TGG + chr4_3:447923-447942 None:intergenic 50.0%
! GGTGGTGGTGATCATGATGA+TGG + chr4_3:447944-447963 None:intergenic 50.0%
ATGCTCACTGATGAAACGCC+AGG + chr4_3:448349-448368 None:intergenic 50.0%
AAGGTTCACCGGAAAGGTTG+TGG - chr4_3:448862-448881 Msa0623270:CDS 50.0%
GCAGGAATGCGGTTATCAGG+TGG + chr4_3:444430-444449 None:intergenic 55.0%
GTGGCAGGAATGCGGTTATC+AGG + chr4_3:444433-444452 None:intergenic 55.0%
!! AAACCGGTGATGATGGTGGC+AGG + chr4_3:444448-444467 None:intergenic 55.0%
CTTGCCGGAACCGAGAAAAC+CGG + chr4_3:444464-444483 None:intergenic 55.0%
AAGGTCTGGATTATCGGCGC+CGG + chr4_3:445017-445036 None:intergenic 55.0%
GCCATCCTGCTATCCCGTTA+TGG + chr4_3:445846-445865 None:intergenic 55.0%
CAATAGTTGTCGCGGCGAGA+TGG + chr4_3:446644-446663 None:intergenic 55.0%
GGCCACTATAGCTTCCGTTG+CGG - chr4_3:446668-446687 Msa0623270:intron 55.0%
TCTGGCTGCCACAACCTTTC+CGG + chr4_3:448873-448892 None:intergenic 55.0%
! GGTTTGAGGCGGAGATGAGG+TGG + chr4_3:444374-444393 None:intergenic 60.0%
! GGTGGTTTGAGGCGGAGATG+AGG + chr4_3:444377-444396 None:intergenic 60.0%
GAGTCGTCGGTGGTTTGAGG+CGG + chr4_3:444385-444404 None:intergenic 60.0%
TCGGAGTCGTCGGTGGTTTG+AGG + chr4_3:444388-444407 None:intergenic 60.0%
! CGGTTTTCTCGGTTCCGGCA+AGG - chr4_3:444462-444481 Msa0623270:intron 60.0%
ATTGCAGTATGGCCCCGGCT+TGG - chr4_3:446123-446142 Msa0623270:CDS 60.0%
GGCCGCAACGGAAGCTATAG+TGG + chr4_3:446673-446692 None:intergenic 60.0%
TGTGGCAGCCAGATGAGCCA+AGG - chr4_3:448880-448899 Msa0623270:CDS 60.0%
GGAGACGTCGTCGGAGTCGT+CGG + chr4_3:444398-444417 None:intergenic 65.0%
GACGTCGTCGGAGTCGTCGG+TGG + chr4_3:444395-444414 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 444070 449240 444070 ID=Msa0623270;Name=Msa0623270
chr4_3 mRNA 444070 449240 444070 ID=Msa0623270-mRNA-1;Parent=Msa0623270;Name=Msa0623270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=108|1|1|1|1|1|10|260|449
chr4_3 exon 444070 444467 444070 ID=Msa0623270-mRNA-1:exon:140;Parent=Msa0623270-mRNA-1
chr4_3 exon 444645 444749 444645 ID=Msa0623270-mRNA-1:exon:139;Parent=Msa0623270-mRNA-1
chr4_3 exon 444911 444993 444911 ID=Msa0623270-mRNA-1:exon:138;Parent=Msa0623270-mRNA-1
chr4_3 exon 445314 445444 445314 ID=Msa0623270-mRNA-1:exon:137;Parent=Msa0623270-mRNA-1
chr4_3 exon 445917 446008 445917 ID=Msa0623270-mRNA-1:exon:136;Parent=Msa0623270-mRNA-1
chr4_3 exon 446117 446167 446117 ID=Msa0623270-mRNA-1:exon:135;Parent=Msa0623270-mRNA-1
chr4_3 exon 448111 448307 448111 ID=Msa0623270-mRNA-1:exon:134;Parent=Msa0623270-mRNA-1
chr4_3 exon 448406 448586 448406 ID=Msa0623270-mRNA-1:exon:133;Parent=Msa0623270-mRNA-1
chr4_3 exon 448676 448741 448676 ID=Msa0623270-mRNA-1:exon:132;Parent=Msa0623270-mRNA-1
chr4_3 exon 448827 449240 448827 ID=Msa0623270-mRNA-1:exon:131;Parent=Msa0623270-mRNA-1
chr4_3 five_prime_UTR 449133 449240 449133 ID=Msa0623270-mRNA-1:five_prime_utr;Parent=Msa0623270-mRNA-1
chr4_3 CDS 448827 449132 448827 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 448676 448741 448676 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 448406 448586 448406 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 448111 448307 448111 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 446117 446167 446117 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 445917 446008 445917 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 445314 445444 445314 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 444911 444993 444911 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 444645 444749 444645 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 CDS 444330 444467 444330 ID=Msa0623270-mRNA-1:cds;Parent=Msa0623270-mRNA-1
chr4_3 three_prime_UTR 444070 444329 444070 ID=Msa0623270-mRNA-1:three_prime_utr;Parent=Msa0623270-mRNA-1
Gene Sequence

>Msa0623270

ATGGCGTTTTGTTTCACTGAACTTGCTTCAAGCTTATTTGGCGCCGCTTATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGACAACACTTCTGAATCATATTCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGTCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACTTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACTATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGACTGATCTTGTTGGCGAATCAGACATCACTTCTTTGGTCCAGCGGATTAGGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCAGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAAATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>Msa0623270

MAFCFTELASSLFGAAYRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTSGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGESDITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL*