AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622690 MtrunA17_Chr1g0212851 99.109 449 4 0 1 449 1 449 0.0 915
Msa0622690 MtrunA17_Chr8g0369371 59.916 237 83 4 21 253 2 230 6.95e-89 270
Msa0622690 MtrunA17_Chr5g0418911 37.234 376 192 7 83 447 24 366 2.18e-73 235
Msa0622690 MtrunA17_Chr8g0369381 43.820 178 81 1 272 449 1 159 5.42e-42 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622690 AT1G80480.1 78.663 389 76 2 61 449 63 444 0.0 575
Msa0622690 AT1G15730.1 71.635 416 111 3 36 449 38 448 0.0 573
Msa0622690 AT1G26520.1 37.602 367 185 6 89 447 42 372 4.41e-76 242

Find 129 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGCTTCAAGCTTATT+TGG 0.162746 4_2:+75421981 Msa0622690:CDS
CTTCTTTGGTCCAGCGGATT+AGG 0.207261 4_2:+75424955 Msa0622690:CDS
ATGGTCAAATTTGCCTTTCT+TGG 0.221608 4_2:-75422648 None:intergenic
ATACTCCGTCCTCTTTAAAT+TGG 0.236187 4_2:-75425102 None:intergenic
GAATGAAAGATTTGTCTTTC+AGG 0.236233 4_2:+75426453 Msa0622690:CDS
GTGAACTTGGATTATGTTCT+TGG 0.237961 4_2:+75425131 Msa0622690:CDS
TCTGGCTGCCACAACCTTTC+CGG 0.245017 4_2:-75426679 None:intergenic
CGAATCAGACATCACTTCTT+TGG 0.265430 4_2:+75424941 Msa0622690:CDS
TTGTTTGTCCTTGGCTCATC+TGG 0.268152 4_2:-75426697 None:intergenic
GCCTCATTGACCACACCTTT+TGG 0.295052 4_2:-75422919 None:intergenic
CTACGGAAGATTGTAGAAAT+TGG 0.299599 4_2:-75422098 None:intergenic
AATAGTATCCTCAGCATAAA+AGG 0.305064 4_2:-75422818 None:intergenic
TGATCGAATAATCGTAAATA+AGG 0.306250 4_2:+75422963 Msa0622690:CDS
AGAAGAGTGGTGAAGGGTTT+GGG 0.309735 4_2:-75422020 None:intergenic
GAACTTGAATGCTGAGGAAT+TGG 0.310817 4_2:+75426738 Msa0622690:CDS
AATTTAAAGAGGACGGAGTA+TGG 0.326999 4_2:+75425104 Msa0622690:CDS
AAGAAGAGTGGTGAAGGGTT+TGG 0.330035 4_2:-75422021 None:intergenic
TGGCATTGGAGGCTTTGATT+TGG 0.346009 4_2:+75425151 Msa0622690:CDS
TTCTTTGGTCCAGCGGATTA+GGG 0.359042 4_2:+75424956 Msa0622690:CDS
GCATAAAAGGTCTGGATTAT+CGG 0.359801 4_2:-75422805 None:intergenic
TAATACAGGTTTGGCGAATC+CGG 0.361283 4_2:+75422780 Msa0622690:intron
GTGGCAGGAATGCGGTTATC+AGG 0.367337 4_2:-75422215 None:intergenic
GTCACTACGTTCCATCAATA+AGG 0.373389 4_2:-75426389 None:intergenic
TTGGATTATGTTCTTGGCAT+TGG 0.395925 4_2:+75425137 Msa0622690:CDS
TTTGGTGAGATTGATATTGA+TGG 0.412472 4_2:+75422509 Msa0622690:CDS
AGATGAAGGTATTCTAGAAA+TGG 0.416613 4_2:-75426918 None:intergenic
AGAGGCGAGTGAGTTTGTTA+TGG 0.423350 4_2:-75422127 None:intergenic
TTCACTATTCATATAGTAAG+TGG 0.425610 4_2:-75426886 None:intergenic
ATACCTTCATCTTTCAATGA+AGG 0.428015 4_2:+75426929 Msa0622690:three_prime_UTR
GAAATTGGAGATGAGTTTAA+CGG 0.433464 4_2:-75422083 None:intergenic
CATGGTCATGGTCATGGCTA+TGG 0.434201 4_2:-75425698 None:intergenic
GTGGCTTGGTACCTTATTGA+TGG 0.439152 4_2:+75426378 Msa0622690:CDS
AAATGATGATGATACCTTGC+CGG 0.444794 4_2:-75422261 None:intergenic
GGAGTTCATGACATATTTCA+AGG 0.445771 4_2:+75426652 Msa0622690:CDS
AACGTAGTGACGACATTTAT+AGG 0.447587 4_2:+75426401 Msa0622690:CDS
TATCCTCAGCATAAAAGGTC+TGG 0.451814 4_2:-75422813 None:intergenic
CCGTCCTCTTTAAATTGGCC+AGG 0.458430 4_2:-75425097 None:intergenic
TGTGGTCATGTGAATCTTCA+TGG 0.466615 4_2:-75425752 None:intergenic
GAATGCTGAGGAATTGGAAA+AGG 0.468936 4_2:+75426744 Msa0622690:CDS
GATCATGATGATGGTGTTCA+TGG 0.472248 4_2:-75425716 None:intergenic
AAAGGTCTTCTATCTGTTCA+AGG 0.474112 4_2:+75426427 Msa0622690:CDS
TTGTCTTTGCTGTACTGTGA+GGG 0.479297 4_2:+75422589 Msa0622690:CDS
CATATTGTTATTGAGACTAC+TGG 0.484719 4_2:+75422668 Msa0622690:CDS
TTGCACCAGACTGATCTTGT+TGG 0.485087 4_2:+75424918 Msa0622690:intron
CAGTAGTCTCAATAACAATA+TGG 0.488237 4_2:-75422667 None:intergenic
ATGGTCATGGTCATGGCTAT+GGG 0.492078 4_2:-75425697 None:intergenic
CTATAGGCTAACATGTGGCT+TGG 0.493336 4_2:+75426364 Msa0622690:intron
GATTATGTTCTTGGCATTGG+AGG 0.493460 4_2:+75425140 Msa0622690:CDS
GAATTAGTCACTTCCAAGAA+AGG 0.495832 4_2:+75422635 Msa0622690:CDS
GAAACACGTGTGAAATCCAT+TGG 0.495998 4_2:-75427035 None:intergenic
ACCGAGAAAACCGGTGATGA+TGG 0.498944 4_2:-75422237 None:intergenic
GAACCTTCATTGAAAGATGA+AGG 0.501399 4_2:-75426932 None:intergenic
TTTGGTATTTCAGTTCATGA+TGG 0.501956 4_2:-75427009 None:intergenic
TTCTTAGTATCACAGCAAAC+AGG 0.504205 4_2:-75426776 None:intergenic
GGAGTATGGAAAGGTGAACT+TGG 0.507746 4_2:+75425118 Msa0622690:CDS
AATTGCGGTTATTGAAAATG+AGG 0.508358 4_2:+75422398 Msa0622690:CDS
AATGCTGAGGAATTGGAAAA+GGG 0.512342 4_2:+75426745 Msa0622690:CDS
GTTGGATGGTGTTGTCACTT+TGG 0.513457 4_2:+75422855 Msa0622690:CDS
TCACTATTCATATAGTAAGT+GGG 0.516115 4_2:-75426885 None:intergenic
GTTTGTTATGGTTGTTACTA+CGG 0.516237 4_2:-75422115 None:intergenic
TTTAATGAAGTCAAGTTGGA+TGG 0.519334 4_2:+75422841 Msa0622690:CDS
TCGGAGTCGTCGGTGGTTTG+AGG 0.520426 4_2:-75422170 None:intergenic
TACATTCACTAGTTAGCCAC+GGG 0.521062 4_2:-75421872 None:intergenic
TGACATATTTCAAGGTTCAC+CGG 0.523489 4_2:+75426660 Msa0622690:CDS
GGTGTTCATGGTCATGGTCA+TGG 0.528471 4_2:-75425704 None:intergenic
GGAGACGTCGTCGGAGTCGT+CGG 0.528650 4_2:-75422180 None:intergenic
CTTGCCGGAACCGAGAAAAC+CGG 0.529351 4_2:-75422246 None:intergenic
AATCTTCATGGTGATGGTGG+TGG 0.536012 4_2:-75425740 None:intergenic
TATTGATGGTTCTTTAGTTG+CGG 0.539178 4_2:+75422523 Msa0622690:CDS
CTTGACGAGGTTAAGCCAAA+AGG 0.540274 4_2:+75422904 Msa0622690:CDS
ATTCCTGCCACCATCATCAC+CGG 0.540312 4_2:+75422227 Msa0622690:CDS
AAACCGGTGATGATGGTGGC+AGG 0.542945 4_2:-75422230 None:intergenic
CATATTCTCACAGCGGAGCA+TGG 0.544248 4_2:+75422369 Msa0622690:CDS
ATGCTCACTGATGAAACGCC+AGG 0.549059 4_2:-75426155 None:intergenic
TTGGTTGATGCGAAACATGC+TGG 0.549484 4_2:+75422874 Msa0622690:CDS
GCGGTTATCAGGTGGAATAA+CGG 0.551353 4_2:-75422204 None:intergenic
CATGATCATAGTCACGATCC+TGG 0.552341 4_2:+75426137 Msa0622690:CDS
GGTGGTGGTGATCATGATGA+TGG 0.553558 4_2:-75425725 None:intergenic
GAGAGCGCTGTTAATGATGA+AGG 0.554591 4_2:+75425654 Msa0622690:CDS
ATTCCAGAAAATAAACAGCC+TGG 0.556534 4_2:+75425079 Msa0622690:intron
AAGGTTCACCGGAAAGGTTG+TGG 0.556980 4_2:+75426671 Msa0622690:CDS
GACGACATTTATAGGATGAA+AGG 0.558665 4_2:+75426409 Msa0622690:CDS
TATTTCAAGGTTCACCGGAA+AGG 0.560823 4_2:+75426665 Msa0622690:CDS
GGGTTTGGGTTTGCGATAAG+CGG 0.562113 4_2:-75422006 None:intergenic
CATGTGAATCTTCATGGTGA+TGG 0.566710 4_2:-75425746 None:intergenic
GATATTATGTTGTTGAACAA+TGG 0.568349 4_2:+75422566 Msa0622690:CDS
AGACACTAACCCTAATCCGC+TGG 0.576738 4_2:-75424965 None:intergenic
AGCAAGTACTAACCTTCTCA+AGG 0.584526 4_2:-75426199 None:intergenic
AAAGAGGACGGAGTATGGAA+AGG 0.586024 4_2:+75425109 Msa0622690:CDS
GTGAATCTTCATGGTGATGG+TGG 0.586196 4_2:-75425743 None:intergenic
TTGGAGGCTTTGATTTGGAG+AGG 0.586416 4_2:+75425156 Msa0622690:CDS
GGTGGAAAGAAGAGTGGTGA+AGG 0.586615 4_2:-75422027 None:intergenic
TGCTGGTTTGCATCTTGACG+AGG 0.587527 4_2:+75422891 Msa0622690:CDS
GGTTTGAGGCGGAGATGAGG+TGG 0.587638 4_2:-75422156 None:intergenic
GGTGTTGGTGGAAAGAAGAG+TGG 0.592017 4_2:-75422033 None:intergenic
CAACATAATATCTTCAGCAC+CGG 0.592357 4_2:-75422555 None:intergenic
TTCAGTGAAACAAAACGCCA+TGG 0.593485 4_2:-75421961 None:intergenic
ACAGCCTGGCCAATTTAAAG+AGG 0.594420 4_2:+75425093 Msa0622690:CDS
GCCAAAAGGTGTGGTCAATG+AGG 0.599909 4_2:+75422918 Msa0622690:CDS
AAATTTAGGTACCATGCTTG+TGG 0.601243 4_2:-75425770 None:intergenic
GTTGTCTTTGCTGTACTGTG+AGG 0.604741 4_2:+75422588 Msa0622690:CDS
CTACATTCACTAGTTAGCCA+CGG 0.606653 4_2:-75421873 None:intergenic
GACGTCGTCGGAGTCGTCGG+TGG 0.608943 4_2:-75422177 None:intergenic
GGTGGTTTGAGGCGGAGATG+AGG 0.610253 4_2:-75422159 None:intergenic
GATGATGGTGTTCATGGTCA+TGG 0.610283 4_2:-75425710 None:intergenic
AGGGAAGAACTTGAATGCTG+AGG 0.611753 4_2:+75426732 Msa0622690:CDS
GTGGAAAGAAGAGTGGTGAA+GGG 0.612512 4_2:-75422026 None:intergenic
ACATCACTTCTTTGGTCCAG+CGG 0.614631 4_2:+75424949 Msa0622690:CDS
TGTCTTTGCTGTACTGTGAG+GGG 0.617492 4_2:+75422590 Msa0622690:CDS
AAGGTCTGGATTATCGGCGC+CGG 0.617720 4_2:-75422799 None:intergenic
GCAGGAATGCGGTTATCAGG+TGG 0.618572 4_2:-75422212 None:intergenic
CCTGGCCAATTTAAAGAGGA+CGG 0.624870 4_2:+75425097 Msa0622690:CDS
TCAGTGAGCATAGTTTGCGA+AGG 0.626638 4_2:+75426167 Msa0622690:CDS
GAGTCGTCGGTGGTTTGAGG+CGG 0.627298 4_2:-75422167 None:intergenic
AGGAAACTTAGACCTTGAGA+AGG 0.627667 4_2:+75426187 Msa0622690:CDS
GATTCACATGACCACAAGCA+TGG 0.628690 4_2:+75425759 Msa0622690:CDS
TGTGGCAGCCAGATGAGCCA+AGG 0.631087 4_2:+75426689 Msa0622690:CDS
GAGATGAGGTGGATGATGAG+AGG 0.634300 4_2:-75422145 None:intergenic
CGAGGTTAAGCCAAAAGGTG+TGG 0.651456 4_2:+75422909 Msa0622690:CDS
GAGAAAACCGGTGATGATGG+TGG 0.657464 4_2:-75422234 None:intergenic
ATGCTGAGGAATTGGAAAAG+GGG 0.668894 4_2:+75426746 Msa0622690:CDS
GTTATCAGGTGGAATAACGG+TGG 0.683146 4_2:-75422201 None:intergenic
TGATGATGGTGGCAGGAATG+CGG 0.686059 4_2:-75422223 None:intergenic
AATAACGGTGGAGACGTCGT+CGG 0.694029 4_2:-75422189 None:intergenic
GGAGCATGGAAAACGAATTG+CGG 0.698183 4_2:+75422383 Msa0622690:CDS
ATTCAGATATCATTCTAACA+AGG 0.703033 4_2:-75422616 None:intergenic
AAATGTTCAAGTAAACAACA+AGG 0.703064 4_2:-75421937 None:intergenic
TCTGAATCATATTCTCACAG+CGG 0.771767 4_2:+75422362 Msa0622690:CDS
ACATTCACTAGTTAGCCACG+GGG 0.817894 4_2:-75421871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATAAAAT+AGG - chr4_2:75425895-75425914 None:intergenic 0.0%
!!! AACTTATTTTTATTTAAGAA+TGG + chr4_2:75423512-75423531 Msa0622690:intron 10.0%
!!! TCTTAAGTTTTTTTTTTTTT+TGG + chr4_2:75423808-75423827 Msa0622690:intron 10.0%
!!! AAGTAAAATAAGATATTTTT+TGG - chr4_2:75424163-75424182 None:intergenic 10.0%
!!! ATCTAATTTTATTATTTGAA+TGG + chr4_2:75425958-75425977 Msa0622690:intron 10.0%
!!! TTTTTCATTGATGAAAAATA+TGG + chr4_2:75423027-75423046 Msa0622690:intron 15.0%
!! AAACTTAAGATTTAAATGTT+GGG - chr4_2:75423798-75423817 None:intergenic 15.0%
!! AAAACTTAAGATTTAAATGT+TGG - chr4_2:75423799-75423818 None:intergenic 15.0%
!!! ATATATTTTATGAAACTGTA+TGG + chr4_2:75424636-75424655 Msa0622690:intron 15.0%
!!! TTTTTCTTAAACAATTGAAA+AGG - chr4_2:75425205-75425224 None:intergenic 15.0%
!!! TTTTCAATTGTTTAAGAAAA+AGG + chr4_2:75425204-75425223 Msa0622690:intron 15.0%
!!! TAATTTTATTATTTGAATGG+TGG + chr4_2:75425961-75425980 Msa0622690:intron 15.0%
!!! ATTAATTTGTCTTATTCATT+TGG + chr4_2:75426246-75426265 Msa0622690:intron 15.0%
!! AGCATTAACATAAAAAATAA+AGG - chr4_2:75426287-75426306 None:intergenic 15.0%
!!! ATGAATAGTTCTTTTGATTT+TGG - chr4_2:75422057-75422076 None:intergenic 20.0%
!! TTGAAATGATTGAATTGAAA+TGG - chr4_2:75422302-75422321 None:intergenic 20.0%
!! TAAAATTGAACTGCTTATTA+GGG + chr4_2:75422724-75422743 Msa0622690:intron 20.0%
!!! TATTTTTAATGAAGTCAAGT+TGG + chr4_2:75422837-75422856 Msa0622690:CDS 20.0%
!! GCTAATTTATACTTATTACA+GGG + chr4_2:75422994-75423013 Msa0622690:intron 20.0%
!! TAACTAAATAATGTACAGTA+TGG + chr4_2:75423093-75423112 Msa0622690:intron 20.0%
!! ATAATTCAAAATTCGCTATA+TGG - chr4_2:75423137-75423156 None:intergenic 20.0%
!! AAAAATTCTACATCAAGTTA+TGG + chr4_2:75423160-75423179 Msa0622690:intron 20.0%
!! TGTATGAAAGTTTCAAATAA+CGG - chr4_2:75423653-75423672 None:intergenic 20.0%
!! TAAAAGTTTATAGATGTTCA+TGG - chr4_2:75424188-75424207 None:intergenic 20.0%
!!! TGAACATCTATAAACTTTTA+AGG + chr4_2:75424188-75424207 Msa0622690:intron 20.0%
!! TCTCAGTTAAAATAAGTTTA+TGG - chr4_2:75424233-75424252 None:intergenic 20.0%
!!! TAAATCTTAAGGGAATTTTT+TGG + chr4_2:75424373-75424392 Msa0622690:intron 20.0%
!!! GAATTTTCAATTTCATTATG+AGG + chr4_2:75424395-75424414 Msa0622690:intron 20.0%
!! TAAAAGCTTATAGATGTTAA+TGG - chr4_2:75424797-75424816 None:intergenic 20.0%
!!! TTAACATCTATAAGCTTTTA+AGG + chr4_2:75424797-75424816 Msa0622690:intron 20.0%
!!! AGCCATAAATTTATTTTAAC+TGG + chr4_2:75424837-75424856 Msa0622690:intron 20.0%
!!! GCCATAAATTTATTTTAACT+GGG + chr4_2:75424838-75424857 Msa0622690:intron 20.0%
!! TCCCAGTTAAAATAAATTTA+TGG - chr4_2:75424842-75424861 None:intergenic 20.0%
!!! CAAAAGTTCTAAAAGTTATA+TGG - chr4_2:75425367-75425386 None:intergenic 20.0%
!!! CATATAACTTTTAGAACTTT+TGG + chr4_2:75425365-75425384 Msa0622690:intron 20.0%
!! TGACAAATCTTATCAAAAAT+AGG - chr4_2:75425860-75425879 None:intergenic 20.0%
!! TTTCATAAGGACAAATTATA+AGG + chr4_2:75426028-75426047 Msa0622690:intron 20.0%
!!! AACTAACATACTTTTTCTAT+AGG + chr4_2:75426348-75426367 Msa0622690:intron 20.0%
!! TGAAAACAACAACAATAAAT+AGG - chr4_2:75426500-75426519 None:intergenic 20.0%
!!! ACAAACAAAATTGTTTTCAT+AGG + chr4_2:75426712-75426731 Msa0622690:CDS 20.0%
!!! CAAACAAAATTGTTTTCATA+GGG + chr4_2:75426713-75426732 Msa0622690:CDS 20.0%
!! TCAAAAAGAATAAAGGATTA+AGG - chr4_2:75426816-75426835 None:intergenic 20.0%
!! TGAACAATCAAAAAGAATAA+AGG - chr4_2:75426823-75426842 None:intergenic 20.0%
!! TAACTAGTGAATGTAGTTTT+TGG + chr4_2:75421880-75421899 Msa0622690:five_prime_UTR 25.0%
! AAATGTTCAAGTAAACAACA+AGG - chr4_2:75421940-75421959 None:intergenic 25.0%
! TGCATATGATTATTGTAGTT+TGG + chr4_2:75422491-75422510 Msa0622690:intron 25.0%
! GATATTATGTTGTTGAACAA+TGG + chr4_2:75422566-75422585 Msa0622690:CDS 25.0%
! ATTCAGATATCATTCTAACA+AGG - chr4_2:75422619-75422638 None:intergenic 25.0%
! GTAAAATTGAACTGCTTATT+AGG + chr4_2:75422723-75422742 Msa0622690:intron 25.0%
! TTGACTGTTTGTATTAATAC+AGG + chr4_2:75422766-75422785 Msa0622690:intron 25.0%
! TGTTTGTATTAATACAGGTT+TGG + chr4_2:75422771-75422790 Msa0622690:intron 25.0%
! TGATCGAATAATCGTAAATA+AGG + chr4_2:75422963-75422982 Msa0622690:CDS 25.0%
!! AATCGTAAATAAGGTATTCA+TGG + chr4_2:75422972-75422991 Msa0622690:intron 25.0%
! GGCTAATTTATACTTATTAC+AGG + chr4_2:75422993-75423012 Msa0622690:intron 25.0%
! AATTTATACTTATTACAGGG+TGG + chr4_2:75422997-75423016 Msa0622690:intron 25.0%
! AATAATGTACAGTATGGTTA+TGG + chr4_2:75423099-75423118 Msa0622690:intron 25.0%
! ATCTAGTACAATCAAAATGT+TGG + chr4_2:75423313-75423332 Msa0622690:intron 25.0%
! TCTAGTACAATCAAAATGTT+GGG + chr4_2:75423314-75423333 Msa0622690:intron 25.0%
!!! TTTAAGAATGGCTTTTAGTT+TGG + chr4_2:75423524-75423543 Msa0622690:intron 25.0%
!!! TTAAGAATGGCTTTTAGTTT+GGG + chr4_2:75423525-75423544 Msa0622690:intron 25.0%
!! TTAGTTTGGGTTATAAAACA+TGG + chr4_2:75423538-75423557 Msa0622690:intron 25.0%
! GAAAATAGTGTATCATTCTT+AGG + chr4_2:75423569-75423588 Msa0622690:intron 25.0%
!! GAAAATGACAGTATTGTTTT+GGG + chr4_2:75423733-75423752 Msa0622690:intron 25.0%
!!! TATTGTTTTGGGATTTACAA+TGG + chr4_2:75423744-75423763 Msa0622690:intron 25.0%
! GAATTTCCTATCTAATTATG+AGG + chr4_2:75423830-75423849 Msa0622690:intron 25.0%
! AAATTCTCAAGAAATGCTTA+TGG + chr4_2:75424043-75424062 Msa0622690:intron 25.0%
! ACAGTGAAGATTTAAATGTT+GGG - chr4_2:75424296-75424315 None:intergenic 25.0%
! AACAGTGAAGATTTAAATGT+TGG - chr4_2:75424297-75424316 None:intergenic 25.0%
!! CATTTAAATCTTCACTGTTT+TGG + chr4_2:75424298-75424317 Msa0622690:intron 25.0%
!! ATTTAAATGTTGGGGTTTTA+AGG - chr4_2:75424358-75424377 None:intergenic 25.0%
! TCCCTTAAGATTTAAATGTT+GGG - chr4_2:75424367-75424386 None:intergenic 25.0%
! TTCCCTTAAGATTTAAATGT+TGG - chr4_2:75424368-75424387 None:intergenic 25.0%
! TATTGAACTGAAATATGTAG+CGG + chr4_2:75424574-75424593 Msa0622690:intron 25.0%
! AGTTAGACATTAATACAAAG+TGG + chr4_2:75424872-75424891 Msa0622690:intron 25.0%
! TCTTAAACAATTGAAAAGGA+AGG - chr4_2:75425201-75425220 None:intergenic 25.0%
! AATGTAAGTTTACTTCTTCT+CGG + chr4_2:75425235-75425254 Msa0622690:intron 25.0%
!!! ATGAGAATGATTTTAGCATA+TGG - chr4_2:75425338-75425357 None:intergenic 25.0%
!!! AGTTCTAAAAGTTATATGGT+AGG - chr4_2:75425363-75425382 None:intergenic 25.0%
! ACTCAACAATTAGATACATT+AGG - chr4_2:75425403-75425422 None:intergenic 25.0%
! TGGGTATTTAGATATTTCTT+CGG + chr4_2:75425553-75425572 Msa0622690:intron 25.0%
!! ATGTCTTCTTGATCTTTTTA+AGG + chr4_2:75425628-75425647 Msa0622690:intron 25.0%
! AAACAAGAAAGGATTGAATT+GGG - chr4_2:75426011-75426030 None:intergenic 25.0%
!!! AAAACAATTTTGTTTGTCCT+TGG - chr4_2:75426709-75426728 None:intergenic 25.0%
! TCACTATTCATATAGTAAGT+GGG - chr4_2:75426888-75426907 None:intergenic 25.0%
! TTCACTATTCATATAGTAAG+TGG - chr4_2:75426889-75426908 None:intergenic 25.0%
! GTTTACTTGAACATTTTCCA+TGG + chr4_2:75421944-75421963 Msa0622690:exon 30.0%
!!! AGTTCTTTTGATTTTGGTGT+TGG - chr4_2:75422051-75422070 None:intergenic 30.0%
GAAATTGGAGATGAGTTTAA+CGG - chr4_2:75422086-75422105 None:intergenic 30.0%
!! GTTTGTTATGGTTGTTACTA+CGG - chr4_2:75422118-75422137 None:intergenic 30.0%
AATTGCGGTTATTGAAAATG+AGG + chr4_2:75422398-75422417 Msa0622690:CDS 30.0%
TTTGGTGAGATTGATATTGA+TGG + chr4_2:75422509-75422528 Msa0622690:CDS 30.0%
! TATTGATGGTTCTTTAGTTG+CGG + chr4_2:75422523-75422542 Msa0622690:CDS 30.0%
CAGTAGTCTCAATAACAATA+TGG - chr4_2:75422670-75422689 None:intergenic 30.0%
! CATATTGTTATTGAGACTAC+TGG + chr4_2:75422668-75422687 Msa0622690:CDS 30.0%
AATAGTATCCTCAGCATAAA+AGG - chr4_2:75422821-75422840 None:intergenic 30.0%
!! TTTAATGAAGTCAAGTTGGA+TGG + chr4_2:75422841-75422860 Msa0622690:CDS 30.0%
! AATATGGATTGTCGAGAAAA+TGG + chr4_2:75423043-75423062 Msa0622690:intron 30.0%
! ATATGGATTGTCGAGAAAAT+GGG + chr4_2:75423044-75423063 Msa0622690:intron 30.0%
TTCAAAATTCGCTATATGGA+AGG - chr4_2:75423133-75423152 None:intergenic 30.0%
! GGAAAATGACAGTATTGTTT+TGG + chr4_2:75423732-75423751 Msa0622690:intron 30.0%
GATTTAAATGTTGGGCTTTA+TGG - chr4_2:75423790-75423809 None:intergenic 30.0%
TGTGCAAGATATAGATTCTA+TGG + chr4_2:75424007-75424026 Msa0622690:intron 30.0%
AAAAAACATCTCATGTGAAG+TGG + chr4_2:75424122-75424141 Msa0622690:intron 30.0%
ATTTAAATGTTGGGGATTTG+AGG - chr4_2:75424287-75424306 None:intergenic 30.0%
CAGTGAAGATTTAAATGTTG+GGG - chr4_2:75424295-75424314 None:intergenic 30.0%
ACCCCAACATTTAAATCTTA+AGG + chr4_2:75424362-75424381 Msa0622690:intron 30.0%
CCCTTAAGATTTAAATGTTG+GGG - chr4_2:75424366-75424385 None:intergenic 30.0%
CCCCAACATTTAAATCTTAA+GGG + chr4_2:75424363-75424382 Msa0622690:intron 30.0%
ATTAAATGCGTAGAAGAACT+AGG - chr4_2:75424544-75424563 None:intergenic 30.0%
ATTGAACTGAAATATGTAGC+GGG + chr4_2:75424575-75424594 Msa0622690:intron 30.0%
GAATTCTCAAGAAACACTTA+TGG + chr4_2:75424662-75424681 Msa0622690:intron 30.0%
GGAAGGAAACAAGAAAAAAA+AGG - chr4_2:75425184-75425203 None:intergenic 30.0%
AATAACTCGAGTATATGTAC+AGG - chr4_2:75425299-75425318 None:intergenic 30.0%
ATGTTTAGTCATAACCTCAT+GGG + chr4_2:75425534-75425553 Msa0622690:intron 30.0%
GAAATATCTAAATACCCATG+AGG - chr4_2:75425551-75425570 None:intergenic 30.0%
TCAACACACAAGACAAATTT+AGG - chr4_2:75425787-75425806 None:intergenic 30.0%
AGCAAATAGGTAAAAACTGT+TGG - chr4_2:75425987-75426006 None:intergenic 30.0%
GAAACAAGAAAGGATTGAAT+TGG - chr4_2:75426012-75426031 None:intergenic 30.0%
! CAATCCTTTCTTGTTTCATA+AGG + chr4_2:75426015-75426034 Msa0622690:intron 30.0%
TTGTCCTTATGAAACAAGAA+AGG - chr4_2:75426022-75426041 None:intergenic 30.0%
!! TGTAGTTTTGCTATGAAGTA+AGG + chr4_2:75426083-75426102 Msa0622690:intron 30.0%
!! GTAGTTTTGCTATGAAGTAA+GGG + chr4_2:75426084-75426103 Msa0622690:intron 30.0%
TCTTATTCATTTGGATGCTT+GGG + chr4_2:75426255-75426274 Msa0622690:intron 30.0%
! TTTTTCTATAGGCTAACATG+TGG + chr4_2:75426359-75426378 Msa0622690:intron 30.0%
GAATGAAAGATTTGTCTTTC+AGG + chr4_2:75426453-75426472 Msa0622690:CDS 30.0%
AGAAAAAAGCCATGCTTTAT+TGG - chr4_2:75426625-75426644 None:intergenic 30.0%
!! AGATGAAGGTATTCTAGAAA+TGG - chr4_2:75426921-75426940 None:intergenic 30.0%
ATACCTTCATCTTTCAATGA+AGG + chr4_2:75426929-75426948 Msa0622690:three_prime_UTR 30.0%
! TTTATGCAGTCACGATTTTA+GGG - chr4_2:75426966-75426985 None:intergenic 30.0%
! ATTTATGCAGTCACGATTTT+AGG - chr4_2:75426967-75426986 None:intergenic 30.0%
TTTGGTATTTCAGTTCATGA+TGG - chr4_2:75427012-75427031 None:intergenic 30.0%
CTGAAATACCAAAAATCCAA+TGG + chr4_2:75427019-75427038 Msa0622690:three_prime_UTR 30.0%
! TGTGAAATCCATTGGATTTT+TGG - chr4_2:75427030-75427049 None:intergenic 30.0%
! GAACTTGCTTCAAGCTTATT+TGG + chr4_2:75421981-75422000 Msa0622690:CDS 35.0%
!!! TCTTTTGATTTTGGTGTTGG+TGG - chr4_2:75422048-75422067 None:intergenic 35.0%
CTACGGAAGATTGTAGAAAT+TGG - chr4_2:75422101-75422120 None:intergenic 35.0%
! AAATGATGATGATACCTTGC+CGG - chr4_2:75422264-75422283 None:intergenic 35.0%
TCTGAATCATATTCTCACAG+CGG + chr4_2:75422362-75422381 Msa0622690:CDS 35.0%
CAACATAATATCTTCAGCAC+CGG - chr4_2:75422558-75422577 None:intergenic 35.0%
GAATTAGTCACTTCCAAGAA+AGG + chr4_2:75422635-75422654 Msa0622690:CDS 35.0%
ATGGTCAAATTTGCCTTTCT+TGG - chr4_2:75422651-75422670 None:intergenic 35.0%
GCATAAAAGGTCTGGATTAT+CGG - chr4_2:75422808-75422827 None:intergenic 35.0%
! AATACTTTCTTTGTGCCGTT+TGG + chr4_2:75423192-75423211 Msa0622690:intron 35.0%
TTGCGAGAAGTTAATCCAAA+CGG - chr4_2:75423210-75423229 None:intergenic 35.0%
TAACTTCTCGCAAATCACTT+CGG + chr4_2:75423217-75423236 Msa0622690:intron 35.0%
!! ACTTCGGTGTTGTTAAATAG+CGG + chr4_2:75423233-75423252 Msa0622690:intron 35.0%
TTGTACTAGATAGCATATCG+CGG - chr4_2:75423304-75423323 None:intergenic 35.0%
TTGCGAATAGCAGAAAACAA+CGG - chr4_2:75423394-75423413 None:intergenic 35.0%
TGACAACACTGAAACACTTA+TGG + chr4_2:75423415-75423434 Msa0622690:intron 35.0%
! TATCCCGTTATGGAATTTTG+GGG - chr4_2:75423621-75423640 None:intergenic 35.0%
! CTATCCCGTTATGGAATTTT+GGG - chr4_2:75423622-75423641 None:intergenic 35.0%
! TAAATGTTGGGCTTTATGGT+TGG - chr4_2:75423786-75423805 None:intergenic 35.0%
GACTACACTATATTGCAGTA+TGG + chr4_2:75423897-75423916 Msa0622690:intron 35.0%
ATAGATTCTATGGAACTGTC+TGG + chr4_2:75424017-75424036 Msa0622690:intron 35.0%
AGTTTATGGCTATTACTTGC+AGG - chr4_2:75424219-75424238 None:intergenic 35.0%
ATTCCAGAAAATAAACAGCC+TGG + chr4_2:75425079-75425098 Msa0622690:intron 35.0%
ATACTCCGTCCTCTTTAAAT+TGG - chr4_2:75425105-75425124 None:intergenic 35.0%
AATTTAAAGAGGACGGAGTA+TGG + chr4_2:75425104-75425123 Msa0622690:CDS 35.0%
GTGAACTTGGATTATGTTCT+TGG + chr4_2:75425131-75425150 Msa0622690:CDS 35.0%
TTGGATTATGTTCTTGGCAT+TGG + chr4_2:75425137-75425156 Msa0622690:CDS 35.0%
!! GAAAAATGTGAGTGCTACTT+TGG - chr4_2:75425484-75425503 None:intergenic 35.0%
CTAAACATGACAACAAAGCA+AGG - chr4_2:75425522-75425541 None:intergenic 35.0%
CATGTTTAGTCATAACCTCA+TGG + chr4_2:75425533-75425552 Msa0622690:intron 35.0%
GACATGCACATCATATATTC+AGG - chr4_2:75425613-75425632 None:intergenic 35.0%
AAATTTAGGTACCATGCTTG+TGG - chr4_2:75425773-75425792 None:intergenic 35.0%
GATTGAATTGGGAAGCAAAT+AGG - chr4_2:75426000-75426019 None:intergenic 35.0%
! GTCTTATTCATTTGGATGCT+TGG + chr4_2:75426254-75426273 Msa0622690:intron 35.0%
CTTATTCATTTGGATGCTTG+GGG + chr4_2:75426256-75426275 Msa0622690:intron 35.0%
TTATTCATTTGGATGCTTGG+GGG + chr4_2:75426257-75426276 Msa0622690:intron 35.0%
AACGTAGTGACGACATTTAT+AGG + chr4_2:75426401-75426420 Msa0622690:CDS 35.0%
GACGACATTTATAGGATGAA+AGG + chr4_2:75426409-75426428 Msa0622690:CDS 35.0%
AAAGGTCTTCTATCTGTTCA+AGG + chr4_2:75426427-75426446 Msa0622690:CDS 35.0%
!!! CATGGCTTTTTTCTGTAACA+GGG + chr4_2:75426631-75426650 Msa0622690:intron 35.0%
GGAGTTCATGACATATTTCA+AGG + chr4_2:75426652-75426671 Msa0622690:CDS 35.0%
TGACATATTTCAAGGTTCAC+CGG + chr4_2:75426660-75426679 Msa0622690:CDS 35.0%
AATGCTGAGGAATTGGAAAA+GGG + chr4_2:75426745-75426764 Msa0622690:CDS 35.0%
TTCTTAGTATCACAGCAAAC+AGG - chr4_2:75426779-75426798 None:intergenic 35.0%
GAACCTTCATTGAAAGATGA+AGG - chr4_2:75426935-75426954 None:intergenic 35.0%
TACATTCACTAGTTAGCCAC+GGG - chr4_2:75421875-75421894 None:intergenic 40.0%
CTACATTCACTAGTTAGCCA+CGG - chr4_2:75421876-75421895 None:intergenic 40.0%
TTCAGTGAAACAAAACGCCA+TGG - chr4_2:75421964-75421983 None:intergenic 40.0%
! TTGTCTTTGCTGTACTGTGA+GGG + chr4_2:75422589-75422608 Msa0622690:CDS 40.0%
TAATACAGGTTTGGCGAATC+CGG + chr4_2:75422780-75422799 Msa0622690:intron 40.0%
! AATCCAGACCTTTTATGCTG+AGG + chr4_2:75422810-75422829 Msa0622690:CDS 40.0%
TATCCTCAGCATAAAAGGTC+TGG - chr4_2:75422816-75422835 None:intergenic 40.0%
! GCTATCCCGTTATGGAATTT+TGG - chr4_2:75423623-75423642 None:intergenic 40.0%
! AAATTCCATAACGGGATAGC+AGG + chr4_2:75423623-75423642 Msa0622690:intron 40.0%
TAACTGTGACTGACAAGAAG+AGG + chr4_2:75423708-75423727 Msa0622690:intron 40.0%
AACTGTGACTGACAAGAAGA+GGG + chr4_2:75423709-75423728 Msa0622690:intron 40.0%
GCTGCACCTCATAATTAGAT+AGG - chr4_2:75423839-75423858 None:intergenic 40.0%
!! CATATAGCAGCAGAGCATTT+TGG - chr4_2:75424486-75424505 None:intergenic 40.0%
CAAAATGCTCTGCTGCTATA+TGG + chr4_2:75424484-75424503 Msa0622690:intron 40.0%
CGAATCAGACATCACTTCTT+TGG + chr4_2:75424941-75424960 Msa0622690:CDS 40.0%
! GATTATGTTCTTGGCATTGG+AGG + chr4_2:75425140-75425159 Msa0622690:CDS 40.0%
GCACATCATATATTCAGGCT+TGG - chr4_2:75425608-75425627 None:intergenic 40.0%
!! GATCATGATGATGGTGTTCA+TGG - chr4_2:75425719-75425738 None:intergenic 40.0%
CATGTGAATCTTCATGGTGA+TGG - chr4_2:75425749-75425768 None:intergenic 40.0%
TGTGGTCATGTGAATCTTCA+TGG - chr4_2:75425755-75425774 None:intergenic 40.0%
AGGAAACTTAGACCTTGAGA+AGG + chr4_2:75426187-75426206 Msa0622690:CDS 40.0%
AGCAAGTACTAACCTTCTCA+AGG - chr4_2:75426202-75426221 None:intergenic 40.0%
CTGAAGCAAAAAGTCTTCGT+TGG + chr4_2:75426305-75426324 Msa0622690:intron 40.0%
GTCACTACGTTCCATCAATA+AGG - chr4_2:75426392-75426411 None:intergenic 40.0%
TCAATTAAGCGACATGAGTC+AGG + chr4_2:75426517-75426536 Msa0622690:intron 40.0%
CGAGACACATATAACACAAG+CGG + chr4_2:75426543-75426562 Msa0622690:intron 40.0%
TCAGTTTCGCCAATAAAGCA+TGG + chr4_2:75426613-75426632 Msa0622690:intron 40.0%
!!! GCATGGCTTTTTTCTGTAAC+AGG + chr4_2:75426630-75426649 Msa0622690:intron 40.0%
TATTTCAAGGTTCACCGGAA+AGG + chr4_2:75426665-75426684 Msa0622690:CDS 40.0%
GAACTTGAATGCTGAGGAAT+TGG + chr4_2:75426738-75426757 Msa0622690:CDS 40.0%
GAATGCTGAGGAATTGGAAA+AGG + chr4_2:75426744-75426763 Msa0622690:CDS 40.0%
ATGCTGAGGAATTGGAAAAG+GGG + chr4_2:75426746-75426765 Msa0622690:CDS 40.0%
ACATTCACTAGTTAGCCACG+GGG - chr4_2:75421874-75421893 None:intergenic 45.0%
AGAAGAGTGGTGAAGGGTTT+GGG - chr4_2:75422023-75422042 None:intergenic 45.0%
AAGAAGAGTGGTGAAGGGTT+TGG - chr4_2:75422024-75422043 None:intergenic 45.0%
GTGGAAAGAAGAGTGGTGAA+GGG - chr4_2:75422029-75422048 None:intergenic 45.0%
!! AGAGGCGAGTGAGTTTGTTA+TGG - chr4_2:75422130-75422149 None:intergenic 45.0%
GTTATCAGGTGGAATAACGG+TGG - chr4_2:75422204-75422223 None:intergenic 45.0%
GCGGTTATCAGGTGGAATAA+CGG - chr4_2:75422207-75422226 None:intergenic 45.0%
!!! ACCATCATCACCGGTTTTCT+CGG + chr4_2:75422236-75422255 Msa0622690:CDS 45.0%
GGAGCATGGAAAACGAATTG+CGG + chr4_2:75422383-75422402 Msa0622690:CDS 45.0%
TTAGTTGCGGCAAAAACGTC+CGG + chr4_2:75422536-75422555 Msa0622690:CDS 45.0%
! GTTGTCTTTGCTGTACTGTG+AGG + chr4_2:75422588-75422607 Msa0622690:CDS 45.0%
! TGTCTTTGCTGTACTGTGAG+GGG + chr4_2:75422590-75422609 Msa0622690:CDS 45.0%
!! GTTGGATGGTGTTGTCACTT+TGG + chr4_2:75422855-75422874 Msa0622690:CDS 45.0%
! TTGGTTGATGCGAAACATGC+TGG + chr4_2:75422874-75422893 Msa0622690:CDS 45.0%
CTTGACGAGGTTAAGCCAAA+AGG + chr4_2:75422904-75422923 Msa0622690:CDS 45.0%
GCTATAGCGCTATTGCATAG+CGG + chr4_2:75423255-75423274 Msa0622690:intron 45.0%
TTGGGAGATAGCAGCTATAG+TGG + chr4_2:75423332-75423351 Msa0622690:intron 45.0%
!!! CCGTTATGGAATTTTGGGGT+CGG - chr4_2:75423617-75423636 None:intergenic 45.0%
CCGACCCCAAAATTCCATAA+CGG + chr4_2:75423614-75423633 Msa0622690:intron 45.0%
CGACCCCAAAATTCCATAAC+GGG + chr4_2:75423615-75423634 Msa0622690:intron 45.0%
ACTGTGACTGACAAGAAGAG+GGG + chr4_2:75423710-75423729 Msa0622690:intron 45.0%
TCAATAGCAGCAGAGCAGTT+TGG - chr4_2:75423879-75423898 None:intergenic 45.0%
ACTATATTGCAGTATGGCCC+CGG + chr4_2:75423903-75423922 Msa0622690:intron 45.0%
ATGCATAGAAAGACCAAGCC+GGG - chr4_2:75423924-75423943 None:intergenic 45.0%
GATGCATAGAAAGACCAAGC+CGG - chr4_2:75423925-75423944 None:intergenic 45.0%
!! AGCAGAGCATTTTGGTGTAG+TGG - chr4_2:75424478-75424497 None:intergenic 45.0%
!! CTGAAATATGTAGCGGGCTA+TGG + chr4_2:75424581-75424600 Msa0622690:intron 45.0%
TTGCACCAGACTGATCTTGT+TGG + chr4_2:75424918-75424937 Msa0622690:intron 45.0%
ATTCGCCAACAAGATCAGTC+TGG - chr4_2:75424926-75424945 None:intergenic 45.0%
ACATCACTTCTTTGGTCCAG+CGG + chr4_2:75424949-75424968 Msa0622690:CDS 45.0%
!! TTCTTTGGTCCAGCGGATTA+GGG + chr4_2:75424956-75424975 Msa0622690:CDS 45.0%
!! TGGCCAGGCTGTTTATTTTC+TGG - chr4_2:75425085-75425104 None:intergenic 45.0%
ACAGCCTGGCCAATTTAAAG+AGG + chr4_2:75425093-75425112 Msa0622690:CDS 45.0%
CCTGGCCAATTTAAAGAGGA+CGG + chr4_2:75425097-75425116 Msa0622690:CDS 45.0%
AAAGAGGACGGAGTATGGAA+AGG + chr4_2:75425109-75425128 Msa0622690:CDS 45.0%
GGAGTATGGAAAGGTGAACT+TGG + chr4_2:75425118-75425137 Msa0622690:CDS 45.0%
! TGGCATTGGAGGCTTTGATT+TGG + chr4_2:75425151-75425170 Msa0622690:CDS 45.0%
!! TTGGAGGCTTTGATTTGGAG+AGG + chr4_2:75425156-75425175 Msa0622690:CDS 45.0%
CAAAGCAAGGCAGTTGACAA+GGG - chr4_2:75425509-75425528 None:intergenic 45.0%
ACAAAGCAAGGCAGTTGACA+AGG - chr4_2:75425510-75425529 None:intergenic 45.0%
!! GAGAGCGCTGTTAATGATGA+AGG + chr4_2:75425654-75425673 Msa0622690:CDS 45.0%
ATGGTCATGGTCATGGCTAT+GGG - chr4_2:75425700-75425719 None:intergenic 45.0%
! GATGATGGTGTTCATGGTCA+TGG - chr4_2:75425713-75425732 None:intergenic 45.0%
!! AATCTTCATGGTGATGGTGG+TGG - chr4_2:75425743-75425762 None:intergenic 45.0%
!! GTGAATCTTCATGGTGATGG+TGG - chr4_2:75425746-75425765 None:intergenic 45.0%
GATTCACATGACCACAAGCA+TGG + chr4_2:75425759-75425778 Msa0622690:CDS 45.0%
CATGATCATAGTCACGATCC+TGG + chr4_2:75426137-75426156 Msa0622690:CDS 45.0%
! TCAGTGAGCATAGTTTGCGA+AGG + chr4_2:75426167-75426186 Msa0622690:CDS 45.0%
CTTCGTTGGCATTTATGTGC+TGG + chr4_2:75426319-75426338 Msa0622690:intron 45.0%
CTATAGGCTAACATGTGGCT+TGG + chr4_2:75426364-75426383 Msa0622690:intron 45.0%
!! GTGGCTTGGTACCTTATTGA+TGG + chr4_2:75426378-75426397 Msa0622690:CDS 45.0%
AAGCGGTGTTTGTGATTCAG+AGG + chr4_2:75426560-75426579 Msa0622690:intron 45.0%
TTGTTTGTCCTTGGCTCATC+TGG - chr4_2:75426700-75426719 None:intergenic 45.0%
AGGGAAGAACTTGAATGCTG+AGG + chr4_2:75426732-75426751 Msa0622690:CDS 45.0%
! GGGTTTGGGTTTGCGATAAG+CGG - chr4_2:75422009-75422028 None:intergenic 50.0%
GGTGGAAAGAAGAGTGGTGA+AGG - chr4_2:75422030-75422049 None:intergenic 50.0%
!! GGTGTTGGTGGAAAGAAGAG+TGG - chr4_2:75422036-75422055 None:intergenic 50.0%
GAGATGAGGTGGATGATGAG+AGG - chr4_2:75422148-75422167 None:intergenic 50.0%
AATAACGGTGGAGACGTCGT+CGG - chr4_2:75422192-75422211 None:intergenic 50.0%
!! TGATGATGGTGGCAGGAATG+CGG - chr4_2:75422226-75422245 None:intergenic 50.0%
ATTCCTGCCACCATCATCAC+CGG + chr4_2:75422227-75422246 Msa0622690:CDS 50.0%
!! GAGAAAACCGGTGATGATGG+TGG - chr4_2:75422237-75422256 None:intergenic 50.0%
ACCGAGAAAACCGGTGATGA+TGG - chr4_2:75422240-75422259 None:intergenic 50.0%
!!! ATCACCGGTTTTCTCGGTTC+CGG + chr4_2:75422242-75422261 Msa0622690:CDS 50.0%
CATATTCTCACAGCGGAGCA+TGG + chr4_2:75422369-75422388 Msa0622690:CDS 50.0%
!! TGCTGGTTTGCATCTTGACG+AGG + chr4_2:75422891-75422910 Msa0622690:CDS 50.0%
CGAGGTTAAGCCAAAAGGTG+TGG + chr4_2:75422909-75422928 Msa0622690:CDS 50.0%
! GCCAAAAGGTGTGGTCAATG+AGG + chr4_2:75422918-75422937 Msa0622690:CDS 50.0%
! GCCTCATTGACCACACCTTT+TGG - chr4_2:75422922-75422941 None:intergenic 50.0%
! TCCATAACGGGATAGCAGGA+TGG + chr4_2:75423627-75423646 Msa0622690:intron 50.0%
CTGTGACTGACAAGAAGAGG+GGG + chr4_2:75423711-75423730 Msa0622690:intron 50.0%
!! AGTTTGGTGATGCGGTGAGA+TGG - chr4_2:75423863-75423882 None:intergenic 50.0%
!! AGCAGAGCAGTTTGGTGATG+CGG - chr4_2:75423871-75423890 None:intergenic 50.0%
TGCATAGAAAGACCAAGCCG+GGG - chr4_2:75423923-75423942 None:intergenic 50.0%
CTGAACTACATAGTGCGCTG+TGG + chr4_2:75423966-75423985 Msa0622690:intron 50.0%
CGCCGCGACAACTATTGTTT+CGG + chr4_2:75424431-75424450 Msa0622690:intron 50.0%
GGCCGAAACAATAGTTGTCG+CGG - chr4_2:75424436-75424455 None:intergenic 50.0%
!! TTTTGGTGTAGTGGCCGCAA+CGG - chr4_2:75424469-75424488 None:intergenic 50.0%
! CTTCTTTGGTCCAGCGGATT+AGG + chr4_2:75424955-75424974 Msa0622690:CDS 50.0%
AGACACTAACCCTAATCCGC+TGG - chr4_2:75424968-75424987 None:intergenic 50.0%
CCGTCCTCTTTAAATTGGCC+AGG - chr4_2:75425100-75425119 None:intergenic 50.0%
CATGGTCATGGTCATGGCTA+TGG - chr4_2:75425701-75425720 None:intergenic 50.0%
GGTGTTCATGGTCATGGTCA+TGG - chr4_2:75425707-75425726 None:intergenic 50.0%
! GGTGGTGGTGATCATGATGA+TGG - chr4_2:75425728-75425747 None:intergenic 50.0%
ATGCTCACTGATGAAACGCC+AGG - chr4_2:75426158-75426177 None:intergenic 50.0%
AAGGTTCACCGGAAAGGTTG+TGG + chr4_2:75426671-75426690 Msa0622690:CDS 50.0%
GCAGGAATGCGGTTATCAGG+TGG - chr4_2:75422215-75422234 None:intergenic 55.0%
GTGGCAGGAATGCGGTTATC+AGG - chr4_2:75422218-75422237 None:intergenic 55.0%
!! AAACCGGTGATGATGGTGGC+AGG - chr4_2:75422233-75422252 None:intergenic 55.0%
CTTGCCGGAACCGAGAAAAC+CGG - chr4_2:75422249-75422268 None:intergenic 55.0%
AAGGTCTGGATTATCGGCGC+CGG - chr4_2:75422802-75422821 None:intergenic 55.0%
GCCATCCTGCTATCCCGTTA+TGG - chr4_2:75423631-75423650 None:intergenic 55.0%
CAATAGTTGTCGCGGCGAGA+TGG - chr4_2:75424428-75424447 None:intergenic 55.0%
GGCCACTATAGCTTCCGTTG+CGG + chr4_2:75424452-75424471 Msa0622690:intron 55.0%
TCTGGCTGCCACAACCTTTC+CGG - chr4_2:75426682-75426701 None:intergenic 55.0%
! GGTTTGAGGCGGAGATGAGG+TGG - chr4_2:75422159-75422178 None:intergenic 60.0%
! GGTGGTTTGAGGCGGAGATG+AGG - chr4_2:75422162-75422181 None:intergenic 60.0%
GAGTCGTCGGTGGTTTGAGG+CGG - chr4_2:75422170-75422189 None:intergenic 60.0%
TCGGAGTCGTCGGTGGTTTG+AGG - chr4_2:75422173-75422192 None:intergenic 60.0%
! CGGTTTTCTCGGTTCCGGCA+AGG + chr4_2:75422247-75422266 Msa0622690:CDS 60.0%
ATTGCAGTATGGCCCCGGCT+TGG + chr4_2:75423908-75423927 Msa0622690:intron 60.0%
GGCCGCAACGGAAGCTATAG+TGG - chr4_2:75424457-75424476 None:intergenic 60.0%
TGTGGCAGCCAGATGAGCCA+AGG + chr4_2:75426689-75426708 Msa0622690:CDS 60.0%
GGAGACGTCGTCGGAGTCGT+CGG - chr4_2:75422183-75422202 None:intergenic 65.0%
GACGTCGTCGGAGTCGTCGG+TGG - chr4_2:75422180-75422199 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 75421859 75427049 75421859 ID=Msa0622690;Name=Msa0622690
chr4_2 mRNA 75421859 75427049 75421859 ID=Msa0622690-mRNA-1;Parent=Msa0622690;Name=Msa0622690-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|1|1|1|1|1|10|260|449
chr4_2 exon 75421859 75422268 75421859 ID=Msa0622690-mRNA-1:exon:22882;Parent=Msa0622690-mRNA-1
chr4_2 exon 75422354 75422419 75422354 ID=Msa0622690-mRNA-1:exon:22883;Parent=Msa0622690-mRNA-1
chr4_2 exon 75422509 75422689 75422509 ID=Msa0622690-mRNA-1:exon:22884;Parent=Msa0622690-mRNA-1
chr4_2 exon 75422788 75422984 75422788 ID=Msa0622690-mRNA-1:exon:22885;Parent=Msa0622690-mRNA-1
chr4_2 exon 75424927 75424977 75424927 ID=Msa0622690-mRNA-1:exon:22886;Parent=Msa0622690-mRNA-1
chr4_2 exon 75425086 75425177 75425086 ID=Msa0622690-mRNA-1:exon:22887;Parent=Msa0622690-mRNA-1
chr4_2 exon 75425650 75425780 75425650 ID=Msa0622690-mRNA-1:exon:22888;Parent=Msa0622690-mRNA-1
chr4_2 exon 75426126 75426208 75426126 ID=Msa0622690-mRNA-1:exon:22889;Parent=Msa0622690-mRNA-1
chr4_2 exon 75426370 75426474 75426370 ID=Msa0622690-mRNA-1:exon:22890;Parent=Msa0622690-mRNA-1
chr4_2 exon 75426652 75427049 75426652 ID=Msa0622690-mRNA-1:exon:22891;Parent=Msa0622690-mRNA-1
chr4_2 five_prime_UTR 75421859 75421962 75421859 ID=Msa0622690-mRNA-1:five_prime_utr;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75421963 75422268 75421963 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75422354 75422419 75422354 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75422509 75422689 75422509 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75422788 75422984 75422788 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75424927 75424977 75424927 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75425086 75425177 75425086 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75425650 75425780 75425650 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75426126 75426208 75426126 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75426370 75426474 75426370 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 CDS 75426652 75426789 75426652 ID=Msa0622690-mRNA-1:cds;Parent=Msa0622690-mRNA-1
chr4_2 three_prime_UTR 75426790 75427049 75426790 ID=Msa0622690-mRNA-1:three_prime_utr;Parent=Msa0622690-mRNA-1
Gene Sequence

>Msa0622690

ATGGCGTTTTGTTTCACTGAACTTGCTTCAAGCTTATTTGGCGCCGCTTATCGCAAACCCAAACCCTTCACCACTCTTCTTTCCACCAACACCAAAATCAAAAGAACTATTCATTTTCAACCGTTAAACTCATCTCCAATTTCTACAATCTTCCGTAGTAACAACCATAACAAACTCACTCGCCTCTCATCATCCACCTCATCTCCGCCTCAAACCACCGACGACTCCGACGACGTCTCCACCGTTATTCCACCTGATAACCGCATTCCTGCCACCATCATCACCGGTTTTCTCGGTTCCGGCAAGACAACACTTCTGAATCATATTCTCACAGCGGAGCATGGAAAACGAATTGCGGTTATTGAAAATGAGTTTGGTGAGATTGATATTGATGGTTCTTTAGTTGCGGCAAAAACGTCCGGTGCTGAAGATATTATGTTGTTGAACAATGGTTGTCTTTGCTGTACTGTGAGGGGTGACCTTGTTAGAATGATATCTGAATTAGTCACTTCCAAGAAAGGCAAATTTGACCATATTGTTATTGAGACTACTGGTTTGGCGAATCCGGCGCCGATAATCCAGACCTTTTATGCTGAGGATACTATTTTTAATGAAGTCAAGTTGGATGGTGTTGTCACTTTGGTTGATGCGAAACATGCTGGTTTGCATCTTGACGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCAGTAGAACAGATTGCATATGCTGATCGAATAATCGTAAATAAGACTGATCTTGTTGGCGAATCAGACATCACTTCTTTGGTCCAGCGGATTAGGAAAATAAACAGCCTGGCCAATTTAAAGAGGACGGAGTATGGAAAGGTGAACTTGGATTATGTTCTTGGCATTGGAGGCTTTGATTTGGAGAGGATTGAGAGCGCTGTTAATGATGAAGGATCAAAAGACGAAGATCACGCCCATAGCCATGACCATGACCATGAACACCATCATCATGATCACCACCACCATCACCATGAAGATTCACATGACCACAAGCATGATCATCACGCTCATGATCATAGTCACGATCCTGGCGTTTCATCAGTGAGCATAGTTTGCGAAGGAAACTTAGACCTTGAGAAGGCTAACATGTGGCTTGGTACCTTATTGATGGAACGTAGTGACGACATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGAATGAAAGATTTGTCTTTCAGGGAGTTCATGACATATTTCAAGGTTCACCGGAAAGGTTGTGGCAGCCAGATGAGCCAAGGACAAACAAAATTGTTTTCATAGGGAAGAACTTGAATGCTGAGGAATTGGAAAAGGGGTTCAAGACCTGTTTGCTGTGA

Protein sequence

>Msa0622690

MAFCFTELASSLFGAAYRKPKPFTTLLSTNTKIKRTIHFQPLNSSPISTIFRSNNHNKLTRLSSSTSSPPQTTDDSDDVSTVIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTSGAEDIMLLNNGCLCCTVRGDLVRMISELVTSKKGKFDHIVIETTGLANPAPIIQTFYAEDTIFNEVKLDGVVTLVDAKHAGLHLDEVKPKGVVNEAVEQIAYADRIIVNKTDLVGESDITSLVQRIRKINSLANLKRTEYGKVNLDYVLGIGGFDLERIESAVNDEGSKDEDHAHSHDHDHEHHHHDHHHHHHEDSHDHKHDHHAHDHSHDPGVSSVSIVCEGNLDLEKANMWLGTLLMERSDDIYRMKGLLSVQGMNERFVFQGVHDIFQGSPERLWQPDEPRTNKIVFIGKNLNAEELEKGFKTCLL*