Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431750 | XP_024632504.1 | 95.312 | 128 | 6 | 0 | 116 | 243 | 273 | 400 | 1.57e-80 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431750 | sp|F4KA50|LRL22_ARATH | 33.654 | 104 | 66 | 3 | 117 | 219 | 521 | 622 | 9.77e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431750 | A2Q1L8 | 95.312 | 128 | 6 | 0 | 116 | 243 | 339 | 466 | 2.51e-80 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1394310 | Msa1431750 | 0.812350 | 4.432091e-51 | -8.615850e-47 |
| Msa1405220 | Msa1431750 | 0.831553 | 1.564181e-55 | -8.615850e-47 |
| Msa1420270 | Msa1431750 | 0.801374 | 9.280134e-49 | -8.615850e-47 |
| Msa1430130 | Msa1431750 | 0.800533 | 1.378328e-48 | -8.615850e-47 |
| Msa1431750 | Msa1457160 | 0.811978 | 5.341225e-51 | -8.615850e-47 |
| Msa1431750 | Msa1458340 | 0.807014 | 6.215705e-50 | -8.615850e-47 |
| Msa1431750 | Msa1460750 | 0.800558 | 1.362610e-48 | -8.615850e-47 |
| Msa1431750 | Msa1462360 | 0.806221 | 9.139498e-50 | -8.615850e-47 |
| Msa0664970 | Msa1431750 | 0.802406 | 5.697247e-49 | -8.615850e-47 |
| Msa0810270 | Msa1431750 | 0.814517 | 1.480003e-51 | -8.615850e-47 |
| Msa0152560 | Msa1431750 | 0.801780 | 7.662128e-49 | -8.615850e-47 |
| Msa0187830 | Msa1431750 | 0.811264 | 7.636578e-51 | -8.615850e-47 |
| Msa0190530 | Msa1431750 | 0.800056 | 1.724071e-48 | -8.615850e-47 |
| Msa0201530 | Msa1431750 | 0.812536 | 4.035809e-51 | -8.615850e-47 |
| Msa0201570 | Msa1431750 | 0.811746 | 6.000526e-51 | -8.615850e-47 |
| Msa1225100 | Msa1431750 | 0.836676 | 8.139094e-57 | -8.615850e-47 |
| Msa1329870 | Msa1431750 | 0.836481 | 9.126442e-57 | -8.615850e-47 |
| Msa1338400 | Msa1431750 | 0.811444 | 6.981459e-51 | -8.615850e-47 |
| Msa0394470 | Msa1431750 | 0.824394 | 8.267145e-54 | -8.615850e-47 |
| Msa0458740 | Msa1431750 | 0.800861 | 1.181616e-48 | -8.615850e-47 |
| Msa1100930 | Msa1431750 | 0.809138 | 2.194616e-50 | -8.615850e-47 |
| Msa0240270 | Msa1431750 | 0.804412 | 2.187320e-49 | -8.615850e-47 |
| Msa0244140 | Msa1431750 | 0.823566 | 1.292800e-53 | -8.615850e-47 |
| Msa0244190 | Msa1431750 | 0.831248 | 1.858995e-55 | -8.615850e-47 |
| Msa0244230 | Msa1431750 | 0.916099 | 2.674646e-85 | -8.615850e-47 |
| Msa0282720 | Msa1431750 | 0.815562 | 8.675916e-52 | -8.615850e-47 |
| Msa0347750 | Msa1431750 | 0.820503 | 6.626708e-53 | -8.615850e-47 |
| Msa1177560 | Msa1431750 | 0.822841 | 1.908543e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431750 | MtrunA17_Chr2g0297951 | 95.312 | 128 | 6 | 0 | 116 | 243 | 339 | 466 | 4.84e-84 | 258 |
| Msa1431750 | MtrunA17_Chr2g0297921 | 89.062 | 128 | 14 | 0 | 116 | 243 | 349 | 476 | 2.25e-77 | 241 |
| Msa1431750 | MtrunA17_Chr2g0297941 | 78.505 | 107 | 23 | 0 | 116 | 222 | 298 | 404 | 1.04e-51 | 172 |
| Msa1431750 | MtrunA17_Chr2g0297911 | 52.941 | 102 | 46 | 1 | 117 | 218 | 281 | 380 | 5.44e-29 | 112 |
| Msa1431750 | MtrunA17_Chr2g0297901 | 44.697 | 132 | 67 | 3 | 117 | 243 | 182 | 312 | 4.61e-28 | 108 |
| Msa1431750 | MtrunA17_Chr2g0297961 | 50.000 | 100 | 50 | 0 | 117 | 216 | 280 | 379 | 1.43e-26 | 106 |
| Msa1431750 | MtrunA17_Chr1g0158151 | 40.179 | 112 | 58 | 5 | 119 | 229 | 597 | 700 | 4.35e-15 | 74.3 |
| Msa1431750 | MtrunA17_Chr1g0158751 | 40.367 | 109 | 57 | 4 | 119 | 223 | 307 | 411 | 5.02e-15 | 73.6 |
| Msa1431750 | MtrunA17_Chr1g0158141 | 46.914 | 81 | 38 | 4 | 140 | 219 | 10 | 86 | 6.28e-14 | 66.2 |
| Msa1431750 | MtrunA17_Chr1g0158631 | 38.182 | 110 | 61 | 4 | 119 | 227 | 595 | 698 | 9.37e-14 | 70.5 |
| Msa1431750 | MtrunA17_Chr1g0158571 | 38.053 | 113 | 63 | 4 | 119 | 230 | 424 | 530 | 1.70e-13 | 69.3 |
| Msa1431750 | MtrunA17_Chr1g0158661 | 38.182 | 110 | 61 | 4 | 119 | 227 | 581 | 684 | 1.71e-13 | 69.7 |
| Msa1431750 | MtrunA17_Chr1g0158041 | 37.143 | 105 | 53 | 3 | 119 | 222 | 602 | 694 | 3.01e-13 | 68.9 |
| Msa1431750 | MtrunA17_Chr1g0157811 | 34.513 | 113 | 65 | 4 | 119 | 225 | 411 | 520 | 3.25e-13 | 68.6 |
| Msa1431750 | MtrunA17_Chr1g0157791 | 34.513 | 113 | 65 | 4 | 119 | 225 | 598 | 707 | 4.13e-13 | 68.6 |
| Msa1431750 | MtrunA17_Chr1g0158301 | 44.156 | 77 | 38 | 3 | 119 | 193 | 605 | 678 | 7.53e-13 | 67.8 |
| Msa1431750 | MtrunA17_Chr1g0158761 | 41.772 | 79 | 42 | 3 | 118 | 195 | 545 | 620 | 1.13e-12 | 67.0 |
| Msa1431750 | MtrunA17_Chr1g0157951 | 33.333 | 117 | 67 | 5 | 119 | 230 | 392 | 502 | 2.06e-12 | 66.2 |
| Msa1431750 | MtrunA17_Chr6g0484051 | 42.105 | 76 | 40 | 2 | 119 | 193 | 562 | 634 | 2.86e-12 | 65.9 |
| Msa1431750 | MtrunA17_Chr1g0158191 | 41.558 | 77 | 39 | 3 | 119 | 193 | 602 | 674 | 2.95e-12 | 65.9 |
| Msa1431750 | MtrunA17_Chr1g0158311 | 38.824 | 85 | 47 | 2 | 120 | 203 | 501 | 581 | 3.21e-12 | 65.9 |
| Msa1431750 | MtrunA17_Chr1g0158541 | 38.158 | 76 | 44 | 2 | 119 | 193 | 607 | 680 | 3.42e-12 | 65.9 |
| Msa1431750 | MtrunA17_Chr1g0158531 | 36.471 | 85 | 49 | 2 | 120 | 203 | 503 | 583 | 3.66e-12 | 65.5 |
| Msa1431750 | MtrunA17_Chr1g0157911 | 35.398 | 113 | 66 | 4 | 119 | 227 | 610 | 719 | 7.25e-12 | 64.7 |
| Msa1431750 | MtrunA17_Chr6g0483791 | 41.772 | 79 | 43 | 2 | 117 | 194 | 580 | 656 | 7.64e-12 | 64.7 |
| Msa1431750 | MtrunA17_Chr7g0250891 | 39.241 | 79 | 42 | 3 | 119 | 194 | 21 | 96 | 7.83e-12 | 60.5 |
| Msa1431750 | MtrunA17_Chr2g0312561 | 38.393 | 112 | 61 | 3 | 120 | 227 | 253 | 360 | 8.03e-12 | 64.3 |
| Msa1431750 | MtrunA17_Chr1g0157991 | 42.029 | 69 | 35 | 2 | 119 | 186 | 605 | 669 | 8.89e-12 | 64.3 |
| Msa1431750 | MtrunA17_Chr1g0158091 | 43.421 | 76 | 39 | 2 | 119 | 193 | 283 | 355 | 1.58e-11 | 63.2 |
| Msa1431750 | MtrunA17_Chr4g0037001 | 43.243 | 74 | 36 | 3 | 123 | 194 | 524 | 593 | 1.79e-11 | 63.5 |
| Msa1431750 | MtrunA17_Chr6g0483811 | 40.506 | 79 | 44 | 2 | 117 | 194 | 269 | 345 | 2.83e-11 | 62.4 |
| Msa1431750 | MtrunA17_Chr2g0311521 | 32.558 | 86 | 46 | 2 | 115 | 194 | 946 | 1025 | 3.48e-11 | 62.8 |
| Msa1431750 | MtrunA17_Chr1g0209491 | 37.662 | 77 | 45 | 2 | 119 | 194 | 16 | 90 | 3.66e-11 | 58.5 |
| Msa1431750 | MtrunA17_Chr1g0157931 | 36.538 | 104 | 59 | 4 | 119 | 218 | 484 | 584 | 3.69e-11 | 62.4 |
| Msa1431750 | MtrunA17_Chr1g0209421 | 41.026 | 78 | 41 | 3 | 119 | 194 | 16 | 90 | 3.85e-11 | 58.5 |
| Msa1431750 | MtrunA17_Chr3g0088321 | 40.260 | 77 | 40 | 3 | 119 | 193 | 264 | 336 | 3.96e-11 | 62.0 |
| Msa1431750 | MtrunA17_Chr7g0251081 | 36.364 | 77 | 46 | 2 | 119 | 194 | 323 | 397 | 5.22e-11 | 62.0 |
| Msa1431750 | MtrunA17_Chr1g0160721 | 31.897 | 116 | 62 | 5 | 119 | 231 | 563 | 664 | 5.40e-11 | 62.0 |
| Msa1431750 | MtrunA17_Chr2g0312571 | 44.118 | 68 | 38 | 0 | 120 | 187 | 258 | 325 | 6.44e-11 | 61.6 |
| Msa1431750 | MtrunA17_Chr4g0022331 | 40.260 | 77 | 41 | 3 | 119 | 193 | 746 | 819 | 6.89e-11 | 62.0 |
| Msa1431750 | MtrunA17_Chr1g0158341 | 34.862 | 109 | 56 | 5 | 119 | 216 | 240 | 344 | 6.96e-11 | 61.2 |
| Msa1431750 | MtrunA17_Chr1g0209471 | 41.026 | 78 | 41 | 3 | 119 | 194 | 278 | 352 | 8.21e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431750 | AT1G70250.1 | 31.731 | 208 | 109 | 8 | 18 | 197 | 549 | 751 | 6.32e-15 | 74.3 |
| Msa1431750 | AT5G38240.2 | 33.654 | 104 | 66 | 3 | 117 | 219 | 521 | 622 | 9.93e-15 | 73.6 |
| Msa1431750 | AT5G38240.3 | 33.654 | 104 | 66 | 3 | 117 | 219 | 475 | 576 | 1.00e-14 | 73.6 |
| Msa1431750 | AT5G38240.1 | 33.654 | 104 | 66 | 3 | 117 | 219 | 539 | 640 | 1.02e-14 | 73.6 |
| Msa1431750 | AT5G38280.1 | 28.962 | 183 | 105 | 7 | 33 | 194 | 441 | 619 | 4.46e-12 | 65.9 |
| Msa1431750 | AT5G38280.2 | 29.091 | 220 | 126 | 10 | 33 | 231 | 441 | 651 | 5.05e-12 | 65.5 |
| Msa1431750 | AT4G18250.1 | 31.034 | 232 | 129 | 10 | 23 | 226 | 451 | 679 | 5.80e-12 | 65.5 |
| Msa1431750 | AT5G38250.1 | 36.986 | 73 | 45 | 1 | 119 | 191 | 520 | 591 | 1.26e-11 | 64.3 |
| Msa1431750 | AT5G39020.1 | 38.158 | 76 | 45 | 2 | 119 | 193 | 706 | 780 | 4.25e-11 | 62.8 |
| Msa1431750 | AT1G66980.1 | 37.805 | 82 | 49 | 2 | 119 | 199 | 1018 | 1098 | 4.44e-11 | 62.8 |
| Msa1431750 | AT1G66980.4 | 37.805 | 82 | 49 | 2 | 119 | 199 | 1001 | 1081 | 4.56e-11 | 62.8 |
| Msa1431750 | AT1G66980.2 | 37.805 | 82 | 49 | 2 | 119 | 199 | 1047 | 1127 | 4.76e-11 | 62.8 |
| Msa1431750 | AT1G66980.3 | 37.805 | 82 | 49 | 2 | 119 | 199 | 1045 | 1125 | 4.99e-11 | 62.8 |
| Msa1431750 | AT5G39030.2 | 34.375 | 96 | 59 | 3 | 119 | 213 | 704 | 796 | 8.75e-11 | 62.0 |
| Msa1431750 | AT5G39030.1 | 33.673 | 98 | 61 | 3 | 117 | 213 | 708 | 802 | 9.10e-11 | 62.0 |
Find 54 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTTCCCATGTCCATTT+TGG | 0.139479 | tig0026888:+31876 | None:intergenic |
| TGGGGTCAAAATGGCAAATT+TGG | 0.213425 | tig0026888:+33718 | None:intergenic |
| CGCTAATAGCGCAGTTCTTC+GGG | 0.230893 | tig0026888:-33750 | Msa1431750:CDS |
| CGCAACAATGGTTTCCAAAA+TGG | 0.234146 | tig0026888:-31890 | Msa1431750:CDS |
| TCCATTTCCCTTTCATAATC+TGG | 0.243247 | tig0026888:-31676 | Msa1431750:CDS |
| GGATCGATTTGGATGAGTTT+TGG | 0.261930 | tig0026888:+33698 | None:intergenic |
| TGGATGGGCCAACATGCTTT+TGG | 0.266399 | tig0026888:+33841 | None:intergenic |
| TCGCTAATAGCGCAGTTCTT+CGG | 0.283861 | tig0026888:-33751 | Msa1431750:CDS |
| TGCAGGGCAAACCTGGTTTC+CGG | 0.318292 | tig0026888:+32705 | None:intergenic |
| TCTCTTAGCTTCTGAATTCA+TGG | 0.326613 | tig0026888:-32512 | Msa1431750:CDS |
| GCGCTATTAGCGTAGCCTTC+TGG | 0.340137 | tig0026888:+33821 | None:intergenic |
| CTCATTAGAGGTCTATCATT+TGG | 0.367852 | tig0026888:+31744 | None:intergenic |
| AATCTCAAATGCATTGTGTT+TGG | 0.370293 | tig0026888:+31551 | None:intergenic |
| GGTGCATTACAGGATCGATT+TGG | 0.379091 | tig0026888:+33687 | None:intergenic |
| CCGGTAGGACTCCAGTTAAA+AGG | 0.380877 | tig0026888:+32724 | None:intergenic |
| AATGTTTGAGAATAATGAAT+TGG | 0.409015 | tig0026888:-31859 | Msa1431750:CDS |
| TTCAGACAGGGCCACGCCCC+AGG | 0.427856 | tig0026888:+33797 | None:intergenic |
| ACAGAATCTTCAAGAGAATC+TGG | 0.429294 | tig0026888:-31582 | Msa1431750:CDS |
| GTTGTTATGCTTGCACTTTG+TGG | 0.437207 | tig0026888:-31837 | Msa1431750:CDS |
| TTCACAACAGTACTCATTAG+AGG | 0.440428 | tig0026888:+31732 | None:intergenic |
| GATAGCAGAGAGAATGTTGA+AGG | 0.456537 | tig0026888:-31793 | Msa1431750:CDS |
| GGACCCTAGAATGGACCAAC+AGG | 0.465583 | tig0026888:-33864 | None:intergenic |
| GAATGTTGAAGGTTGCTCTA+TGG | 0.470015 | tig0026888:-31782 | Msa1431750:CDS |
| GGTAATTCATATATCTTGTC+GGG | 0.475980 | tig0026888:-32490 | Msa1431750:CDS |
| ACCAGATTATGAAAGGGAAA+TGG | 0.476262 | tig0026888:+31675 | None:intergenic |
| GGGTAATTCATATATCTTGT+CGG | 0.484556 | tig0026888:-32491 | Msa1431750:CDS |
| TACTGTTGTGAAGATGTTAG+AGG | 0.490511 | tig0026888:-31721 | Msa1431750:CDS |
| CTCTTAGCTTCTGAATTCAT+GGG | 0.490936 | tig0026888:-32511 | Msa1431750:CDS |
| AGCAGGAACCAGATTATGAA+AGG | 0.498465 | tig0026888:+31668 | None:intergenic |
| CTAATAGCGCACCTGGGGCG+TGG | 0.506155 | tig0026888:-33808 | Msa1431750:CDS |
| AATAGCGAAATTCTTCAGAC+AGG | 0.509704 | tig0026888:+33784 | None:intergenic |
| GGCTACGCTAATAGCGCACC+TGG | 0.518973 | tig0026888:-33815 | Msa1431750:CDS |
| CTGGAGTCCTACCGGAAACC+AGG | 0.523953 | tig0026888:-32716 | Msa1431750:intron |
| GCAGGAACCAGATTATGAAA+GGG | 0.539493 | tig0026888:+31669 | None:intergenic |
| TAAAGAAAATTTGACACAAG+AGG | 0.554088 | tig0026888:-31646 | Msa1431750:CDS |
| AAAGAAAATTTGACACAAGA+GGG | 0.562254 | tig0026888:-31645 | Msa1431750:CDS |
| GAGCATGTAAGTTACAAGAT+GGG | 0.565802 | tig0026888:+32424 | None:intergenic |
| AGCGCAGTTCTTCGGGTCTG+TGG | 0.567874 | tig0026888:-33743 | Msa1431750:CDS |
| GAATTCAGAAGCTAAGAGAA+TGG | 0.582531 | tig0026888:+32516 | None:intergenic |
| GCTACGCTAATAGCGCACCT+GGG | 0.594999 | tig0026888:-33814 | Msa1431750:CDS |
| CTGATACGACTACATCATCA+TGG | 0.600921 | tig0026888:-31608 | Msa1431750:CDS |
| TATTAGCGTAGCCTTCTGGA+TGG | 0.602588 | tig0026888:+33825 | None:intergenic |
| AGCATGTTGGCCCATCCAGA+AGG | 0.602855 | tig0026888:-33836 | Msa1431750:CDS |
| AATGGTTTCCAAAATGGACA+TGG | 0.605792 | tig0026888:-31884 | Msa1431750:CDS |
| GTTATAGTGAATCGCAACAA+TGG | 0.606927 | tig0026888:-31902 | Msa1431750:CDS |
| ATTCATATATCTTGTCGGGA+AGG | 0.615582 | tig0026888:-32486 | Msa1431750:CDS |
| ATTAGCGTAGCCTTCTGGAT+GGG | 0.622665 | tig0026888:+33826 | None:intergenic |
| CCAACAGGCCAAAAGCATGT+TGG | 0.626059 | tig0026888:-33849 | Msa1431750:CDS |
| AGATTATGAAAGGGAAATGG+AGG | 0.627739 | tig0026888:+31678 | None:intergenic |
| ACTGTTGTGAAGATGTTAGA+GGG | 0.632455 | tig0026888:-31720 | Msa1431750:CDS |
| ATGGTTTCCAAAATGGACAT+GGG | 0.633578 | tig0026888:-31883 | Msa1431750:CDS |
| ATAGCGAAATTCTTCAGACA+GGG | 0.634569 | tig0026888:+33785 | None:intergenic |
| CTACGCTAATAGCGCACCTG+GGG | 0.639825 | tig0026888:-33813 | Msa1431750:CDS |
| GGGCAAACCTGGTTTCCGGT+AGG | 0.649732 | tig0026888:+32709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAATTAATTATATGAA+TGG | + | tig0026888:32630-32649 | None:intergenic | 10.0% |
| !! | ATTCATATAATTAATTAACT+TGG | - | tig0026888:32629-32648 | Msa1431750:intron | 10.0% |
| !! | AAGTTAATTAATTATATGAA+TGG | + | tig0026888:32630-32649 | None:intergenic | 10.0% |
| !! | ATTCATATAATTAATTAACT+TGG | - | tig0026888:32629-32648 | Msa1431750:intron | 10.0% |
| !! | TCTTTAAATAACATATTTCA+TGG | - | tig0026888:31750-31769 | Msa1431750:CDS | 15.0% |
| !! | AATTAATCAAAAGAACATTA+GGG | - | tig0026888:31796-31815 | Msa1431750:CDS | 15.0% |
| !!! | TTCACAAAAATTCTTTTAAA+AGG | + | tig0026888:33227-33246 | None:intergenic | 15.0% |
| !!! | AAAACTCCTAAATTTAAAAT+GGG | + | tig0026888:33293-33312 | None:intergenic | 15.0% |
| !! | AAAAACTCCTAAATTTAAAA+TGG | + | tig0026888:33294-33313 | None:intergenic | 15.0% |
| !! | TCTTTAAATAACATATTTCA+TGG | - | tig0026888:31750-31769 | Msa1431750:CDS | 15.0% |
| !! | AATTAATCAAAAGAACATTA+GGG | - | tig0026888:31796-31815 | Msa1431750:CDS | 15.0% |
| !!! | TTCACAAAAATTCTTTTAAA+AGG | + | tig0026888:33227-33246 | None:intergenic | 15.0% |
| !!! | AAAACTCCTAAATTTAAAAT+GGG | + | tig0026888:33293-33312 | None:intergenic | 15.0% |
| !! | AAAAACTCCTAAATTTAAAA+TGG | + | tig0026888:33294-33313 | None:intergenic | 15.0% |
| !! | GAATTAATCAAAAGAACATT+AGG | - | tig0026888:31795-31814 | Msa1431750:CDS | 20.0% |
| !!! | AGGACGATTTTTTTTTTAAA+GGG | + | tig0026888:32424-32443 | None:intergenic | 20.0% |
| !! | AATTTACTCTTTCATAAACT+TGG | - | tig0026888:32516-32535 | Msa1431750:CDS | 20.0% |
| !! | AGAATTGTTAAGATAAGTAA+AGG | + | tig0026888:32804-32823 | None:intergenic | 20.0% |
| !!! | TCAATACCCATTTTAAATTT+AGG | - | tig0026888:33284-33303 | Msa1431750:intron | 20.0% |
| !! | TTTAACAAATTTGACATAAG+AGG | - | tig0026888:33354-33373 | Msa1431750:intron | 20.0% |
| !! | TTAACAAATTTGACATAAGA+GGG | - | tig0026888:33355-33374 | Msa1431750:intron | 20.0% |
| !! | AATGTTTGAGAATAATGAAT+TGG | - | tig0026888:33531-33550 | Msa1431750:intron | 20.0% |
| !! | GAATTAATCAAAAGAACATT+AGG | - | tig0026888:31795-31814 | Msa1431750:CDS | 20.0% |
| !!! | AGGACGATTTTTTTTTTAAA+GGG | + | tig0026888:32424-32443 | None:intergenic | 20.0% |
| !! | AATTTACTCTTTCATAAACT+TGG | - | tig0026888:32516-32535 | Msa1431750:CDS | 20.0% |
| !! | AGAATTGTTAAGATAAGTAA+AGG | + | tig0026888:32804-32823 | None:intergenic | 20.0% |
| !!! | TCAATACCCATTTTAAATTT+AGG | - | tig0026888:33284-33303 | Msa1431750:intron | 20.0% |
| !! | TTTAACAAATTTGACATAAG+AGG | - | tig0026888:33354-33373 | Msa1431750:intron | 20.0% |
| !! | TTAACAAATTTGACATAAGA+GGG | - | tig0026888:33355-33374 | Msa1431750:intron | 20.0% |
| !! | AATGTTTGAGAATAATGAAT+TGG | - | tig0026888:33531-33550 | Msa1431750:intron | 20.0% |
| ! | TTAAAGACATTATATGTTGC+TGG | + | tig0026888:31737-31756 | None:intergenic | 25.0% |
| !!! | TGTTGATTTATGTTTATGAG+GGG | + | tig0026888:31829-31848 | None:intergenic | 25.0% |
| !!! | GTGTTGATTTATGTTTATGA+GGG | + | tig0026888:31830-31849 | None:intergenic | 25.0% |
| !!! | AGTGTTGATTTATGTTTATG+AGG | + | tig0026888:31831-31850 | None:intergenic | 25.0% |
| ! | ATTTAAGTATTTACGCACAT+GGG | + | tig0026888:32213-32232 | None:intergenic | 25.0% |
| ! | TTATCTGTTAAATGTATCAG+AGG | + | tig0026888:32361-32380 | None:intergenic | 25.0% |
| !!! | ACGATTTTTTTTTTAAAGGG+GGG | + | tig0026888:32421-32440 | None:intergenic | 25.0% |
| !!! | GACGATTTTTTTTTTAAAGG+GGG | + | tig0026888:32422-32441 | None:intergenic | 25.0% |
| !!! | GGACGATTTTTTTTTTAAAG+GGG | + | tig0026888:32423-32442 | None:intergenic | 25.0% |
| !!! | GAGGACGATTTTTTTTTTAA+AGG | + | tig0026888:32425-32444 | None:intergenic | 25.0% |
| !! | AGTAAATTTTCCACAATATG+AGG | + | tig0026888:32504-32523 | None:intergenic | 25.0% |
| ! | ACGTTATGTGAATTTGATAT+GGG | + | tig0026888:32604-32623 | None:intergenic | 25.0% |
| ! | TACGTTATGTGAATTTGATA+TGG | + | tig0026888:32605-32624 | None:intergenic | 25.0% |
| ! | AAGATTTCTTAAGACTCTAA+AGG | + | tig0026888:32842-32861 | None:intergenic | 25.0% |
| !! | GTTTTCTAAACATGAGTATT+CGG | - | tig0026888:33176-33195 | Msa1431750:intron | 25.0% |
| ! | TAAAGAAAATTTGACACAAG+AGG | - | tig0026888:33744-33763 | Msa1431750:CDS | 25.0% |
| ! | AAAGAAAATTTGACACAAGA+GGG | - | tig0026888:33745-33764 | Msa1431750:CDS | 25.0% |
| ! | TTAAAGACATTATATGTTGC+TGG | + | tig0026888:31737-31756 | None:intergenic | 25.0% |
| !!! | TGTTGATTTATGTTTATGAG+GGG | + | tig0026888:31829-31848 | None:intergenic | 25.0% |
| !!! | GTGTTGATTTATGTTTATGA+GGG | + | tig0026888:31830-31849 | None:intergenic | 25.0% |
| !!! | AGTGTTGATTTATGTTTATG+AGG | + | tig0026888:31831-31850 | None:intergenic | 25.0% |
| ! | ATTTAAGTATTTACGCACAT+GGG | + | tig0026888:32213-32232 | None:intergenic | 25.0% |
| ! | TTATCTGTTAAATGTATCAG+AGG | + | tig0026888:32361-32380 | None:intergenic | 25.0% |
| !!! | ACGATTTTTTTTTTAAAGGG+GGG | + | tig0026888:32421-32440 | None:intergenic | 25.0% |
| !!! | GACGATTTTTTTTTTAAAGG+GGG | + | tig0026888:32422-32441 | None:intergenic | 25.0% |
| !!! | GGACGATTTTTTTTTTAAAG+GGG | + | tig0026888:32423-32442 | None:intergenic | 25.0% |
| !!! | GAGGACGATTTTTTTTTTAA+AGG | + | tig0026888:32425-32444 | None:intergenic | 25.0% |
| !! | AGTAAATTTTCCACAATATG+AGG | + | tig0026888:32504-32523 | None:intergenic | 25.0% |
| ! | ACGTTATGTGAATTTGATAT+GGG | + | tig0026888:32604-32623 | None:intergenic | 25.0% |
| ! | TACGTTATGTGAATTTGATA+TGG | + | tig0026888:32605-32624 | None:intergenic | 25.0% |
| ! | AAGATTTCTTAAGACTCTAA+AGG | + | tig0026888:32842-32861 | None:intergenic | 25.0% |
| !! | GTTTTCTAAACATGAGTATT+CGG | - | tig0026888:33176-33195 | Msa1431750:intron | 25.0% |
| ! | TAAAGAAAATTTGACACAAG+AGG | - | tig0026888:33744-33763 | Msa1431750:CDS | 25.0% |
| ! | AAAGAAAATTTGACACAAGA+GGG | - | tig0026888:33745-33764 | Msa1431750:CDS | 25.0% |
| TATATGTTGCTGGATGATTA+TGG | + | tig0026888:31727-31746 | None:intergenic | 30.0% | |
| ATAGATAGTTTACCTACCTT+TGG | + | tig0026888:31875-31894 | None:intergenic | 30.0% | |
| AAAGGTAGGTAAACTATCTA+TGG | - | tig0026888:31874-31893 | Msa1431750:CDS | 30.0% | |
| GATATGCAAGAAACATGATT+AGG | + | tig0026888:31906-31925 | None:intergenic | 30.0% | |
| AAAGAATGAAGTGAAAGCTA+GGG | + | tig0026888:31948-31967 | None:intergenic | 30.0% | |
| !! | TGGGAGTATATAAGCATTTT+CGG | + | tig0026888:32194-32213 | None:intergenic | 30.0% |
| CATTTAAGTATTTACGCACA+TGG | + | tig0026888:32214-32233 | None:intergenic | 30.0% | |
| TTAAATGTATCAGAGGACTA+AGG | + | tig0026888:32354-32373 | None:intergenic | 30.0% | |
| TAAGGGATTTCTAAATTTCG+AGG | + | tig0026888:32444-32463 | None:intergenic | 30.0% | |
| AGAAATCCCTTAACATTTAC+TGG | - | tig0026888:32452-32471 | Msa1431750:CDS | 30.0% | |
| GAAATCCCTTAACATTTACT+GGG | - | tig0026888:32453-32472 | Msa1431750:CDS | 30.0% | |
| TTGAACCCAGTAAATGTTAA+GGG | + | tig0026888:32461-32480 | None:intergenic | 30.0% | |
| TTGAAGTAATCCTCATATTG+TGG | - | tig0026888:32491-32510 | Msa1431750:CDS | 30.0% | |
| ! | ATTAATTAACTTGGACACTC+AGG | - | tig0026888:32638-32657 | Msa1431750:intron | 30.0% |
| GGGTAATTCATATATCTTGT+CGG | - | tig0026888:32899-32918 | Msa1431750:intron | 30.0% | |
| GGTAATTCATATATCTTGTC+GGG | - | tig0026888:32900-32919 | Msa1431750:intron | 30.0% | |
| !! | TAAGAGTATTCAAATGCAAG+AGG | + | tig0026888:33010-33029 | None:intergenic | 30.0% |
| GAAGTTCAAGAACTTCATTA+TGG | + | tig0026888:33422-33441 | None:intergenic | 30.0% | |
| ! | TGTGTCAAATTTTCTTTAGC+AGG | + | tig0026888:33742-33761 | None:intergenic | 30.0% |
| AATCTCAAATGCATTGTGTT+TGG | + | tig0026888:33842-33861 | None:intergenic | 30.0% | |
| TATATGTTGCTGGATGATTA+TGG | + | tig0026888:31727-31746 | None:intergenic | 30.0% | |
| ATAGATAGTTTACCTACCTT+TGG | + | tig0026888:31875-31894 | None:intergenic | 30.0% | |
| AAAGGTAGGTAAACTATCTA+TGG | - | tig0026888:31874-31893 | Msa1431750:CDS | 30.0% | |
| GATATGCAAGAAACATGATT+AGG | + | tig0026888:31906-31925 | None:intergenic | 30.0% | |
| AAAGAATGAAGTGAAAGCTA+GGG | + | tig0026888:31948-31967 | None:intergenic | 30.0% | |
| !! | TGGGAGTATATAAGCATTTT+CGG | + | tig0026888:32194-32213 | None:intergenic | 30.0% |
| CATTTAAGTATTTACGCACA+TGG | + | tig0026888:32214-32233 | None:intergenic | 30.0% | |
| TTAAATGTATCAGAGGACTA+AGG | + | tig0026888:32354-32373 | None:intergenic | 30.0% | |
| TAAGGGATTTCTAAATTTCG+AGG | + | tig0026888:32444-32463 | None:intergenic | 30.0% | |
| AGAAATCCCTTAACATTTAC+TGG | - | tig0026888:32452-32471 | Msa1431750:CDS | 30.0% | |
| GAAATCCCTTAACATTTACT+GGG | - | tig0026888:32453-32472 | Msa1431750:CDS | 30.0% | |
| TTGAACCCAGTAAATGTTAA+GGG | + | tig0026888:32461-32480 | None:intergenic | 30.0% | |
| TTGAAGTAATCCTCATATTG+TGG | - | tig0026888:32491-32510 | Msa1431750:CDS | 30.0% | |
| ! | ATTAATTAACTTGGACACTC+AGG | - | tig0026888:32638-32657 | Msa1431750:intron | 30.0% |
| GGGTAATTCATATATCTTGT+CGG | - | tig0026888:32899-32918 | Msa1431750:intron | 30.0% | |
| GGTAATTCATATATCTTGTC+GGG | - | tig0026888:32900-32919 | Msa1431750:intron | 30.0% | |
| !! | TAAGAGTATTCAAATGCAAG+AGG | + | tig0026888:33010-33029 | None:intergenic | 30.0% |
| GAAGTTCAAGAACTTCATTA+TGG | + | tig0026888:33422-33441 | None:intergenic | 30.0% | |
| ! | TGTGTCAAATTTTCTTTAGC+AGG | + | tig0026888:33742-33761 | None:intergenic | 30.0% |
| AATCTCAAATGCATTGTGTT+TGG | + | tig0026888:33842-33861 | None:intergenic | 30.0% | |
| ATAGCGAAATTCTTCAGACA+GGG | + | tig0026888:31608-31627 | None:intergenic | 35.0% | |
| AATAGCGAAATTCTTCAGAC+AGG | + | tig0026888:31609-31628 | None:intergenic | 35.0% | |
| !!! | ATCGATTTGGATGAGTTTTG+GGG | + | tig0026888:31693-31712 | None:intergenic | 35.0% |
| !!! | GATCGATTTGGATGAGTTTT+GGG | + | tig0026888:31694-31713 | None:intergenic | 35.0% |
| GCATGAATTTACACAACCAA+AGG | - | tig0026888:31856-31875 | Msa1431750:CDS | 35.0% | |
| GAATTTACACAACCAAAGGT+AGG | - | tig0026888:31860-31879 | Msa1431750:CDS | 35.0% | |
| CAAAGAATGAAGTGAAAGCT+AGG | + | tig0026888:31949-31968 | None:intergenic | 35.0% | |
| AAGGGATTTAAGCATGGTTT+GGG | + | tig0026888:31987-32006 | None:intergenic | 35.0% | |
| ACTCTTTCAAGATCAACTTG+TGG | + | tig0026888:32059-32078 | None:intergenic | 35.0% | |
| TGATCTTGAAAGAGTTTGAG+TGG | - | tig0026888:32064-32083 | Msa1431750:intron | 35.0% | |
| GATCTTGAAAGAGTTTGAGT+GGG | - | tig0026888:32065-32084 | Msa1431750:intron | 35.0% | |
| ! | GGAGTATATAAGCATTTTCG+GGG | + | tig0026888:32192-32211 | None:intergenic | 35.0% |
| !! | GGGAGTATATAAGCATTTTC+GGG | + | tig0026888:32193-32212 | None:intergenic | 35.0% |
| TGAACTTATGTATCAGTGTC+AGG | + | tig0026888:32259-32278 | None:intergenic | 35.0% | |
| GTGAAGAATGTTAAGTACGA+CGG | + | tig0026888:32312-32331 | None:intergenic | 35.0% | |
| AGTTTACTTTAGCTGATGAG+CGG | - | tig0026888:32381-32400 | Msa1431750:intron | 35.0% | |
| CTTGAACCCAGTAAATGTTA+AGG | + | tig0026888:32462-32481 | None:intergenic | 35.0% | |
| GAATTCAGAAGCTAAGAGAA+TGG | + | tig0026888:32877-32896 | None:intergenic | 35.0% | |
| TCTCTTAGCTTCTGAATTCA+TGG | - | tig0026888:32878-32897 | Msa1431750:intron | 35.0% | |
| CTCTTAGCTTCTGAATTCAT+GGG | - | tig0026888:32879-32898 | Msa1431750:intron | 35.0% | |
| ATTCATATATCTTGTCGGGA+AGG | - | tig0026888:32904-32923 | Msa1431750:intron | 35.0% | |
| GAGCATGTAAGTTACAAGAT+GGG | + | tig0026888:32969-32988 | None:intergenic | 35.0% | |
| AGAGCATGTAAGTTACAAGA+TGG | + | tig0026888:32970-32989 | None:intergenic | 35.0% | |
| !! | GTTTTTCGAAGAGTCTTATG+AGG | + | tig0026888:33048-33067 | None:intergenic | 35.0% |
| TTGAAAGTAAGCGAATGCTA+TGG | + | tig0026888:33101-33120 | None:intergenic | 35.0% | |
| TTATGTCTCTATTCGTTCCA+AGG | + | tig0026888:33204-33223 | None:intergenic | 35.0% | |
| !! | AAATGGGTATTGAGAGACTT+GGG | + | tig0026888:33277-33296 | None:intergenic | 35.0% |
| !! | AAAATGGGTATTGAGAGACT+TGG | + | tig0026888:33278-33297 | None:intergenic | 35.0% |
| GTTATAGTGAATCGCAACAA+TGG | - | tig0026888:33488-33507 | Msa1431750:intron | 35.0% | |
| AATGGTTTCCAAAATGGACA+TGG | - | tig0026888:33506-33525 | Msa1431750:intron | 35.0% | |
| ATGGTTTCCAAAATGGACAT+GGG | - | tig0026888:33507-33526 | Msa1431750:intron | 35.0% | |
| ! | AACATTTCCCATGTCCATTT+TGG | + | tig0026888:33517-33536 | None:intergenic | 35.0% |
| CTCATTAGAGGTCTATCATT+TGG | + | tig0026888:33649-33668 | None:intergenic | 35.0% | |
| TTCACAACAGTACTCATTAG+AGG | + | tig0026888:33661-33680 | None:intergenic | 35.0% | |
| TACTGTTGTGAAGATGTTAG+AGG | - | tig0026888:33669-33688 | Msa1431750:intron | 35.0% | |
| ACTGTTGTGAAGATGTTAGA+GGG | - | tig0026888:33670-33689 | Msa1431750:intron | 35.0% | |
| AGATTATGAAAGGGAAATGG+AGG | + | tig0026888:33715-33734 | None:intergenic | 35.0% | |
| TCCATTTCCCTTTCATAATC+TGG | - | tig0026888:33714-33733 | Msa1431750:CDS | 35.0% | |
| ACCAGATTATGAAAGGGAAA+TGG | + | tig0026888:33718-33737 | None:intergenic | 35.0% | |
| ACAGAATCTTCAAGAGAATC+TGG | - | tig0026888:33808-33827 | Msa1431750:CDS | 35.0% | |
| ATAGCGAAATTCTTCAGACA+GGG | + | tig0026888:31608-31627 | None:intergenic | 35.0% | |
| AATAGCGAAATTCTTCAGAC+AGG | + | tig0026888:31609-31628 | None:intergenic | 35.0% | |
| !!! | ATCGATTTGGATGAGTTTTG+GGG | + | tig0026888:31693-31712 | None:intergenic | 35.0% |
| !!! | GATCGATTTGGATGAGTTTT+GGG | + | tig0026888:31694-31713 | None:intergenic | 35.0% |
| GCATGAATTTACACAACCAA+AGG | - | tig0026888:31856-31875 | Msa1431750:CDS | 35.0% | |
| GAATTTACACAACCAAAGGT+AGG | - | tig0026888:31860-31879 | Msa1431750:CDS | 35.0% | |
| CAAAGAATGAAGTGAAAGCT+AGG | + | tig0026888:31949-31968 | None:intergenic | 35.0% | |
| AAGGGATTTAAGCATGGTTT+GGG | + | tig0026888:31987-32006 | None:intergenic | 35.0% | |
| ACTCTTTCAAGATCAACTTG+TGG | + | tig0026888:32059-32078 | None:intergenic | 35.0% | |
| TGATCTTGAAAGAGTTTGAG+TGG | - | tig0026888:32064-32083 | Msa1431750:intron | 35.0% | |
| GATCTTGAAAGAGTTTGAGT+GGG | - | tig0026888:32065-32084 | Msa1431750:intron | 35.0% | |
| ! | GGAGTATATAAGCATTTTCG+GGG | + | tig0026888:32192-32211 | None:intergenic | 35.0% |
| !! | GGGAGTATATAAGCATTTTC+GGG | + | tig0026888:32193-32212 | None:intergenic | 35.0% |
| TGAACTTATGTATCAGTGTC+AGG | + | tig0026888:32259-32278 | None:intergenic | 35.0% | |
| GTGAAGAATGTTAAGTACGA+CGG | + | tig0026888:32312-32331 | None:intergenic | 35.0% | |
| AGTTTACTTTAGCTGATGAG+CGG | - | tig0026888:32381-32400 | Msa1431750:intron | 35.0% | |
| CTTGAACCCAGTAAATGTTA+AGG | + | tig0026888:32462-32481 | None:intergenic | 35.0% | |
| GAATTCAGAAGCTAAGAGAA+TGG | + | tig0026888:32877-32896 | None:intergenic | 35.0% | |
| TCTCTTAGCTTCTGAATTCA+TGG | - | tig0026888:32878-32897 | Msa1431750:intron | 35.0% | |
| CTCTTAGCTTCTGAATTCAT+GGG | - | tig0026888:32879-32898 | Msa1431750:intron | 35.0% | |
| ATTCATATATCTTGTCGGGA+AGG | - | tig0026888:32904-32923 | Msa1431750:intron | 35.0% | |
| GAGCATGTAAGTTACAAGAT+GGG | + | tig0026888:32969-32988 | None:intergenic | 35.0% | |
| AGAGCATGTAAGTTACAAGA+TGG | + | tig0026888:32970-32989 | None:intergenic | 35.0% | |
| !! | GTTTTTCGAAGAGTCTTATG+AGG | + | tig0026888:33048-33067 | None:intergenic | 35.0% |
| TTGAAAGTAAGCGAATGCTA+TGG | + | tig0026888:33101-33120 | None:intergenic | 35.0% | |
| TTATGTCTCTATTCGTTCCA+AGG | + | tig0026888:33204-33223 | None:intergenic | 35.0% | |
| !! | AAATGGGTATTGAGAGACTT+GGG | + | tig0026888:33277-33296 | None:intergenic | 35.0% |
| !! | AAAATGGGTATTGAGAGACT+TGG | + | tig0026888:33278-33297 | None:intergenic | 35.0% |
| GTTATAGTGAATCGCAACAA+TGG | - | tig0026888:33488-33507 | Msa1431750:intron | 35.0% | |
| AATGGTTTCCAAAATGGACA+TGG | - | tig0026888:33506-33525 | Msa1431750:intron | 35.0% | |
| ATGGTTTCCAAAATGGACAT+GGG | - | tig0026888:33507-33526 | Msa1431750:intron | 35.0% | |
| ! | AACATTTCCCATGTCCATTT+TGG | + | tig0026888:33517-33536 | None:intergenic | 35.0% |
| CTCATTAGAGGTCTATCATT+TGG | + | tig0026888:33649-33668 | None:intergenic | 35.0% | |
| TTCACAACAGTACTCATTAG+AGG | + | tig0026888:33661-33680 | None:intergenic | 35.0% | |
| TACTGTTGTGAAGATGTTAG+AGG | - | tig0026888:33669-33688 | Msa1431750:intron | 35.0% | |
| ACTGTTGTGAAGATGTTAGA+GGG | - | tig0026888:33670-33689 | Msa1431750:intron | 35.0% | |
| AGATTATGAAAGGGAAATGG+AGG | + | tig0026888:33715-33734 | None:intergenic | 35.0% | |
| TCCATTTCCCTTTCATAATC+TGG | - | tig0026888:33714-33733 | Msa1431750:CDS | 35.0% | |
| ACCAGATTATGAAAGGGAAA+TGG | + | tig0026888:33718-33737 | None:intergenic | 35.0% | |
| ACAGAATCTTCAAGAGAATC+TGG | - | tig0026888:33808-33827 | Msa1431750:CDS | 35.0% | |
| TGGGGTCAAAATGGCAAATT+TGG | + | tig0026888:31675-31694 | None:intergenic | 40.0% | |
| !!! | GATGAGTTTTGGGGTCAAAA+TGG | + | tig0026888:31684-31703 | None:intergenic | 40.0% |
| !!! | GGATCGATTTGGATGAGTTT+TGG | + | tig0026888:31695-31714 | None:intergenic | 40.0% |
| GGATGATTATGGTGCATTAC+AGG | + | tig0026888:31716-31735 | None:intergenic | 40.0% | |
| GAAGGGATTTAAGCATGGTT+TGG | + | tig0026888:31988-32007 | None:intergenic | 40.0% | |
| TGGAAGAAGGGATTTAAGCA+TGG | + | tig0026888:31993-32012 | None:intergenic | 40.0% | |
| GCAAGAAACAAGTGGAAGAA+GGG | + | tig0026888:32005-32024 | None:intergenic | 40.0% | |
| AGCAAGAAACAAGTGGAAGA+AGG | + | tig0026888:32006-32025 | None:intergenic | 40.0% | |
| CTTCATGAGCAAGAAACAAG+TGG | + | tig0026888:32013-32032 | None:intergenic | 40.0% | |
| CAACTTGTGGTAATCAAGCA+TGG | + | tig0026888:32046-32065 | None:intergenic | 40.0% | |
| TTGAAAGAGTTTGAGTGGGT+TGG | - | tig0026888:32069-32088 | Msa1431750:intron | 40.0% | |
| AACCTAGAGAGAGAAAGTGA+AGG | - | tig0026888:32148-32167 | Msa1431750:intron | 40.0% | |
| TTCCTTCACTTTCTCTCTCT+AGG | + | tig0026888:32153-32172 | None:intergenic | 40.0% | |
| !! | GTATATAAGCATTTTCGGGG+TGG | + | tig0026888:32189-32208 | None:intergenic | 40.0% |
| GTAAACACGACTAAGACGAA+GGG | + | tig0026888:32237-32256 | None:intergenic | 40.0% | |
| AGGTTCATGGAAAACGGTTA+TGG | + | tig0026888:32334-32353 | None:intergenic | 40.0% | |
| GGACTAAGGTTCATGGAAAA+CGG | + | tig0026888:32340-32359 | None:intergenic | 40.0% | |
| TATCAGAGGACTAAGGTTCA+TGG | + | tig0026888:32347-32366 | None:intergenic | 40.0% | |
| GTTTACTTTAGCTGATGAGC+GGG | - | tig0026888:32382-32401 | Msa1431750:intron | 40.0% | |
| ! | CTCAGGATTTGCCTTTTAAC+TGG | - | tig0026888:32655-32674 | Msa1431750:intron | 40.0% |
| AAGTAAAGGAAGTGAGAGAC+AGG | + | tig0026888:32790-32809 | None:intergenic | 40.0% | |
| CAAATGCAAGAGGTCTAAGT+CGG | + | tig0026888:33000-33019 | None:intergenic | 40.0% | |
| AACATGAGTATTCGGATCCT+TGG | - | tig0026888:33184-33203 | Msa1431750:intron | 40.0% | |
| CGCAACAATGGTTTCCAAAA+TGG | - | tig0026888:33500-33519 | Msa1431750:intron | 40.0% | |
| GTTGTTATGCTTGCACTTTG+TGG | - | tig0026888:33553-33572 | Msa1431750:intron | 40.0% | |
| GATAGCAGAGAGAATGTTGA+AGG | - | tig0026888:33597-33616 | Msa1431750:intron | 40.0% | |
| GAATGTTGAAGGTTGCTCTA+TGG | - | tig0026888:33608-33627 | Msa1431750:intron | 40.0% | |
| GCAGGAACCAGATTATGAAA+GGG | + | tig0026888:33724-33743 | None:intergenic | 40.0% | |
| AGCAGGAACCAGATTATGAA+AGG | + | tig0026888:33725-33744 | None:intergenic | 40.0% | |
| CTGATACGACTACATCATCA+TGG | - | tig0026888:33782-33801 | Msa1431750:CDS | 40.0% | |
| TGGGGTCAAAATGGCAAATT+TGG | + | tig0026888:31675-31694 | None:intergenic | 40.0% | |
| !!! | GATGAGTTTTGGGGTCAAAA+TGG | + | tig0026888:31684-31703 | None:intergenic | 40.0% |
| !!! | GGATCGATTTGGATGAGTTT+TGG | + | tig0026888:31695-31714 | None:intergenic | 40.0% |
| GGATGATTATGGTGCATTAC+AGG | + | tig0026888:31716-31735 | None:intergenic | 40.0% | |
| GAAGGGATTTAAGCATGGTT+TGG | + | tig0026888:31988-32007 | None:intergenic | 40.0% | |
| TGGAAGAAGGGATTTAAGCA+TGG | + | tig0026888:31993-32012 | None:intergenic | 40.0% | |
| GCAAGAAACAAGTGGAAGAA+GGG | + | tig0026888:32005-32024 | None:intergenic | 40.0% | |
| AGCAAGAAACAAGTGGAAGA+AGG | + | tig0026888:32006-32025 | None:intergenic | 40.0% | |
| CTTCATGAGCAAGAAACAAG+TGG | + | tig0026888:32013-32032 | None:intergenic | 40.0% | |
| CAACTTGTGGTAATCAAGCA+TGG | + | tig0026888:32046-32065 | None:intergenic | 40.0% | |
| TTGAAAGAGTTTGAGTGGGT+TGG | - | tig0026888:32069-32088 | Msa1431750:intron | 40.0% | |
| AACCTAGAGAGAGAAAGTGA+AGG | - | tig0026888:32148-32167 | Msa1431750:intron | 40.0% | |
| TTCCTTCACTTTCTCTCTCT+AGG | + | tig0026888:32153-32172 | None:intergenic | 40.0% | |
| !! | GTATATAAGCATTTTCGGGG+TGG | + | tig0026888:32189-32208 | None:intergenic | 40.0% |
| GTAAACACGACTAAGACGAA+GGG | + | tig0026888:32237-32256 | None:intergenic | 40.0% | |
| AGGTTCATGGAAAACGGTTA+TGG | + | tig0026888:32334-32353 | None:intergenic | 40.0% | |
| GGACTAAGGTTCATGGAAAA+CGG | + | tig0026888:32340-32359 | None:intergenic | 40.0% | |
| TATCAGAGGACTAAGGTTCA+TGG | + | tig0026888:32347-32366 | None:intergenic | 40.0% | |
| GTTTACTTTAGCTGATGAGC+GGG | - | tig0026888:32382-32401 | Msa1431750:intron | 40.0% | |
| ! | CTCAGGATTTGCCTTTTAAC+TGG | - | tig0026888:32655-32674 | Msa1431750:intron | 40.0% |
| AAGTAAAGGAAGTGAGAGAC+AGG | + | tig0026888:32790-32809 | None:intergenic | 40.0% | |
| CAAATGCAAGAGGTCTAAGT+CGG | + | tig0026888:33000-33019 | None:intergenic | 40.0% | |
| AACATGAGTATTCGGATCCT+TGG | - | tig0026888:33184-33203 | Msa1431750:intron | 40.0% | |
| CGCAACAATGGTTTCCAAAA+TGG | - | tig0026888:33500-33519 | Msa1431750:intron | 40.0% | |
| GTTGTTATGCTTGCACTTTG+TGG | - | tig0026888:33553-33572 | Msa1431750:intron | 40.0% | |
| GATAGCAGAGAGAATGTTGA+AGG | - | tig0026888:33597-33616 | Msa1431750:intron | 40.0% | |
| GAATGTTGAAGGTTGCTCTA+TGG | - | tig0026888:33608-33627 | Msa1431750:intron | 40.0% | |
| GCAGGAACCAGATTATGAAA+GGG | + | tig0026888:33724-33743 | None:intergenic | 40.0% | |
| AGCAGGAACCAGATTATGAA+AGG | + | tig0026888:33725-33744 | None:intergenic | 40.0% | |
| CTGATACGACTACATCATCA+TGG | - | tig0026888:33782-33801 | Msa1431750:CDS | 40.0% | |
| ATTAGCGTAGCCTTCTGGAT+GGG | + | tig0026888:31567-31586 | None:intergenic | 45.0% | |
| TATTAGCGTAGCCTTCTGGA+TGG | + | tig0026888:31568-31587 | None:intergenic | 45.0% | |
| TCGCTAATAGCGCAGTTCTT+CGG | - | tig0026888:31639-31658 | Msa1431750:CDS | 45.0% | |
| GGTGCATTACAGGATCGATT+TGG | + | tig0026888:31706-31725 | None:intergenic | 45.0% | |
| TCTCTCTTCCTTCTCTCTAG+AGG | + | tig0026888:32113-32132 | None:intergenic | 45.0% | |
| GGTAAACACGACTAAGACGA+AGG | + | tig0026888:32238-32257 | None:intergenic | 45.0% | |
| !! | CCTTTTAACTGGAGTCCTAC+CGG | - | tig0026888:32666-32685 | Msa1431750:intron | 45.0% |
| AGTGAGAGACAGGTGTATCA+AGG | + | tig0026888:32780-32799 | None:intergenic | 45.0% | |
| ATTAGCGTAGCCTTCTGGAT+GGG | + | tig0026888:31567-31586 | None:intergenic | 45.0% | |
| TATTAGCGTAGCCTTCTGGA+TGG | + | tig0026888:31568-31587 | None:intergenic | 45.0% | |
| TCGCTAATAGCGCAGTTCTT+CGG | - | tig0026888:31639-31658 | Msa1431750:CDS | 45.0% | |
| GGTGCATTACAGGATCGATT+TGG | + | tig0026888:31706-31725 | None:intergenic | 45.0% | |
| TCTCTCTTCCTTCTCTCTAG+AGG | + | tig0026888:32113-32132 | None:intergenic | 45.0% | |
| GGTAAACACGACTAAGACGA+AGG | + | tig0026888:32238-32257 | None:intergenic | 45.0% | |
| !! | CCTTTTAACTGGAGTCCTAC+CGG | - | tig0026888:32666-32685 | Msa1431750:intron | 45.0% |
| AGTGAGAGACAGGTGTATCA+AGG | + | tig0026888:32780-32799 | None:intergenic | 45.0% | |
| ! | CCAACATGCTTTTGGCCTGT+TGG | + | tig0026888:31544-31563 | None:intergenic | 50.0% |
| ! | CCAACAGGCCAAAAGCATGT+TGG | - | tig0026888:31541-31560 | Msa1431750:CDS | 50.0% |
| ! | TGGATGGGCCAACATGCTTT+TGG | + | tig0026888:31552-31571 | None:intergenic | 50.0% |
| CGCTAATAGCGCAGTTCTTC+GGG | - | tig0026888:31640-31659 | Msa1431750:CDS | 50.0% | |
| !! | GAGTTTGAGTGGGTTGGAAG+AGG | - | tig0026888:32075-32094 | Msa1431750:intron | 50.0% |
| CCGGTAGGACTCCAGTTAAA+AGG | + | tig0026888:32669-32688 | None:intergenic | 50.0% | |
| ! | TGTTGCAAGCAAGCACTGCA+GGG | + | tig0026888:32704-32723 | None:intergenic | 50.0% |
| ! | ATGTTGCAAGCAAGCACTGC+AGG | + | tig0026888:32705-32724 | None:intergenic | 50.0% |
| ! | CCAACATGCTTTTGGCCTGT+TGG | + | tig0026888:31544-31563 | None:intergenic | 50.0% |
| ! | CCAACAGGCCAAAAGCATGT+TGG | - | tig0026888:31541-31560 | Msa1431750:CDS | 50.0% |
| ! | TGGATGGGCCAACATGCTTT+TGG | + | tig0026888:31552-31571 | None:intergenic | 50.0% |
| CGCTAATAGCGCAGTTCTTC+GGG | - | tig0026888:31640-31659 | Msa1431750:CDS | 50.0% | |
| !! | GAGTTTGAGTGGGTTGGAAG+AGG | - | tig0026888:32075-32094 | Msa1431750:intron | 50.0% |
| CCGGTAGGACTCCAGTTAAA+AGG | + | tig0026888:32669-32688 | None:intergenic | 50.0% | |
| ! | TGTTGCAAGCAAGCACTGCA+GGG | + | tig0026888:32704-32723 | None:intergenic | 50.0% |
| ! | ATGTTGCAAGCAAGCACTGC+AGG | + | tig0026888:32705-32724 | None:intergenic | 50.0% |
| AGCATGTTGGCCCATCCAGA+AGG | - | tig0026888:31554-31573 | Msa1431750:CDS | 55.0% | |
| GCGCTATTAGCGTAGCCTTC+TGG | + | tig0026888:31572-31591 | None:intergenic | 55.0% | |
| GCTACGCTAATAGCGCACCT+GGG | - | tig0026888:31576-31595 | Msa1431750:CDS | 55.0% | |
| CTACGCTAATAGCGCACCTG+GGG | - | tig0026888:31577-31596 | Msa1431750:CDS | 55.0% | |
| !! | AGTGGGTTGGAAGAGGAGAG+AGG | - | tig0026888:32082-32101 | Msa1431750:intron | 55.0% |
| !! | GTGGGTTGGAAGAGGAGAGA+GGG | - | tig0026888:32083-32102 | Msa1431750:intron | 55.0% |
| ! | TGGGTTGGAAGAGGAGAGAG+GGG | - | tig0026888:32084-32103 | Msa1431750:intron | 55.0% |
| TGCAGGGCAAACCTGGTTTC+CGG | + | tig0026888:32688-32707 | None:intergenic | 55.0% | |
| AGCATGTTGGCCCATCCAGA+AGG | - | tig0026888:31554-31573 | Msa1431750:CDS | 55.0% | |
| GCGCTATTAGCGTAGCCTTC+TGG | + | tig0026888:31572-31591 | None:intergenic | 55.0% | |
| GCTACGCTAATAGCGCACCT+GGG | - | tig0026888:31576-31595 | Msa1431750:CDS | 55.0% | |
| CTACGCTAATAGCGCACCTG+GGG | - | tig0026888:31577-31596 | Msa1431750:CDS | 55.0% | |
| !! | AGTGGGTTGGAAGAGGAGAG+AGG | - | tig0026888:32082-32101 | Msa1431750:intron | 55.0% |
| !! | GTGGGTTGGAAGAGGAGAGA+GGG | - | tig0026888:32083-32102 | Msa1431750:intron | 55.0% |
| ! | TGGGTTGGAAGAGGAGAGAG+GGG | - | tig0026888:32084-32103 | Msa1431750:intron | 55.0% |
| TGCAGGGCAAACCTGGTTTC+CGG | + | tig0026888:32688-32707 | None:intergenic | 55.0% | |
| GGCTACGCTAATAGCGCACC+TGG | - | tig0026888:31575-31594 | Msa1431750:CDS | 60.0% | |
| AGCGCAGTTCTTCGGGTCTG+TGG | - | tig0026888:31647-31666 | Msa1431750:CDS | 60.0% | |
| GTTGGAAGAGGAGAGAGGGG+CGG | - | tig0026888:32087-32106 | Msa1431750:intron | 60.0% | |
| CTGGAGTCCTACCGGAAACC+AGG | - | tig0026888:32674-32693 | Msa1431750:intron | 60.0% | |
| GGGCAAACCTGGTTTCCGGT+AGG | + | tig0026888:32684-32703 | None:intergenic | 60.0% | |
| ! | CAAGCACTGCAGGGCAAACC+TGG | + | tig0026888:32695-32714 | None:intergenic | 60.0% |
| GGCTACGCTAATAGCGCACC+TGG | - | tig0026888:31575-31594 | Msa1431750:CDS | 60.0% | |
| AGCGCAGTTCTTCGGGTCTG+TGG | - | tig0026888:31647-31666 | Msa1431750:CDS | 60.0% | |
| GTTGGAAGAGGAGAGAGGGG+CGG | - | tig0026888:32087-32106 | Msa1431750:intron | 60.0% | |
| CTGGAGTCCTACCGGAAACC+AGG | - | tig0026888:32674-32693 | Msa1431750:intron | 60.0% | |
| GGGCAAACCTGGTTTCCGGT+AGG | + | tig0026888:32684-32703 | None:intergenic | 60.0% | |
| ! | CAAGCACTGCAGGGCAAACC+TGG | + | tig0026888:32695-32714 | None:intergenic | 60.0% |
| CTAATAGCGCACCTGGGGCG+TGG | - | tig0026888:31582-31601 | Msa1431750:CDS | 65.0% | |
| ! | AGGGGCGGCCTCTAGAGAGA+AGG | - | tig0026888:32102-32121 | Msa1431750:intron | 65.0% |
| CTAATAGCGCACCTGGGGCG+TGG | - | tig0026888:31582-31601 | Msa1431750:CDS | 65.0% | |
| ! | AGGGGCGGCCTCTAGAGAGA+AGG | - | tig0026888:32102-32121 | Msa1431750:intron | 65.0% |
| TTCAGACAGGGCCACGCCCC+AGG | + | tig0026888:31596-31615 | None:intergenic | 70.0% | |
| TTCAGACAGGGCCACGCCCC+AGG | + | tig0026888:31596-31615 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026888 | gene | 31536 | 33876 | 31536 | ID=Msa1431750;Name=Msa1431750 |
| tig0026888 | mRNA | 31536 | 33876 | 31536 | ID=Msa1431750-mRNA-1;Parent=Msa1431750;Name=Msa1431750-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.25|1|1|4|0|243 |
| tig0026888 | exon | 33697 | 33876 | 33697 | ID=Msa1431750-mRNA-1:exon:7718;Parent=Msa1431750-mRNA-1 |
| tig0026888 | exon | 32717 | 32752 | 32717 | ID=Msa1431750-mRNA-1:exon:7717;Parent=Msa1431750-mRNA-1 |
| tig0026888 | exon | 32439 | 32566 | 32439 | ID=Msa1431750-mRNA-1:exon:7716;Parent=Msa1431750-mRNA-1 |
| tig0026888 | exon | 31536 | 31923 | 31536 | ID=Msa1431750-mRNA-1:exon:7715;Parent=Msa1431750-mRNA-1 |
| tig0026888 | CDS | 33697 | 33876 | 33697 | ID=Msa1431750-mRNA-1:cds;Parent=Msa1431750-mRNA-1 |
| tig0026888 | CDS | 32717 | 32752 | 32717 | ID=Msa1431750-mRNA-1:cds;Parent=Msa1431750-mRNA-1 |
| tig0026888 | CDS | 32439 | 32566 | 32439 | ID=Msa1431750-mRNA-1:cds;Parent=Msa1431750-mRNA-1 |
| tig0026888 | CDS | 31536 | 31923 | 31536 | ID=Msa1431750-mRNA-1:cds;Parent=Msa1431750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
