AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0394470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394470 MtrunA17_Chr3g0080131 97.482 278 6 1 1 277 1 278 0.0 558
Msa0394470 MtrunA17_Chr3g0126921 26.838 272 142 9 8 276 13 230 5.36e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0394470 AT4G10170.1 54.676 278 100 6 1 277 1 253 7.60e-93 275
Msa0394470 AT4G10170.2 54.676 278 100 6 1 277 1 253 7.60e-93 275
Msa0394470 AT1G33475.1 44.484 281 125 7 1 277 1 254 4.43e-71 219
Msa0394470 AT1G33475.2 45.370 108 48 2 171 277 55 152 1.00e-23 94.4
Msa0394470 AT1G33475.2 57.143 56 22 1 1 54 1 56 2.23e-16 75.1
Msa0394470 AT4G27840.1 25.263 285 177 7 1 276 1 258 6.99e-19 84.3
Msa0394470 AT5G52990.1 24.643 280 181 8 10 277 10 271 8.29e-16 75.9

Find 60 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTTTGCAAAAGGATA+TGG 0.148205 3_2:-9109882 Msa0394470:CDS
AAGGCCTGATTCAGGAAATT+TGG 0.252155 3_2:-9109933 Msa0394470:CDS
TTCAACCAAAGCCCCTTTAT+TGG 0.253713 3_2:-9110056 Msa0394470:CDS
AATGAGAGATGTTGAGTTAG+AGG 0.307965 3_2:-9109984 Msa0394470:CDS
TCAACCAAAGCCCCTTTATT+GGG 0.328565 3_2:-9110055 Msa0394470:CDS
GTATAATATTATTTGTCATC+TGG 0.366131 3_2:-9109769 Msa0394470:CDS
GACGAAACTTCCTCGACATT+TGG 0.372647 3_2:-9110133 Msa0394470:CDS
ATTTCGAGACAATAGGTAAA+AGG 0.375196 3_2:-9110402 Msa0394470:CDS
CCGTCCAAATTTCCTGAATC+AGG 0.383998 3_2:+9109929 None:intergenic
AGTTTACGTTCAAGAGAAAC+TGG 0.388560 3_2:-9110221 Msa0394470:CDS
AGAGGATCAAGGCCTGATTC+AGG 0.392539 3_2:-9109941 Msa0394470:CDS
ACGTAAACTGAATTCATGTT+TGG 0.402139 3_2:+9110235 None:intergenic
ATTTGTCCATTCAAATTACT+TGG 0.402162 3_2:+9110091 None:intergenic
AGATGAAGGTCTTGGTAACT+TGG 0.412330 3_2:-9110332 Msa0394470:CDS
TAGCTAGAACAATGCGTACT+TGG 0.417134 3_2:+9109807 None:intergenic
TCTTCTTTGCAAAAGGATAT+GGG 0.429775 3_2:-9109881 Msa0394470:CDS
TTTCACATAGTGGTAGTGAT+TGG 0.431762 3_2:-9110159 Msa0394470:CDS
TGCTACATCTTCTTTGCAAA+AGG 0.439541 3_2:-9109888 Msa0394470:CDS
CTCAAAACGTCCGTAAGAAA+TGG 0.447780 3_2:-9109835 Msa0394470:CDS
TACTTCACAATTGTAGATGA+AGG 0.455781 3_2:-9110346 Msa0394470:CDS
CATTACTGTTGTGTTTCTAA+AGG 0.456727 3_2:-9110520 Msa0394470:CDS
CCATTCAAATTACTTGGTGA+TGG 0.462379 3_2:+9110097 None:intergenic
CACAGCCTTGTGCTTGGAGG+CGG 0.462743 3_2:-9110446 Msa0394470:CDS
ACAATTGTAGATGAAGGTCT+TGG 0.466801 3_2:-9110340 Msa0394470:CDS
ACAATAGGTAAAAGGACTTA+CGG 0.467377 3_2:-9110394 Msa0394470:CDS
CTTGGCGCCACCATTTCTTA+CGG 0.469508 3_2:+9109825 None:intergenic
CAATAGGTAAAAGGACTTAC+GGG 0.479243 3_2:-9110393 Msa0394470:CDS
TTAGAGAATGTTTCACATAG+TGG 0.480167 3_2:-9110169 Msa0394470:CDS
AGGCGGTTCCTTCTTTCCAC+AGG 0.481926 3_2:-9110429 Msa0394470:CDS
CACATCTTGTATGCGTATAG+TGG 0.484986 3_2:-9110493 Msa0394470:CDS
AAATTACTTGGTGATGGAGA+TGG 0.492575 3_2:+9110103 None:intergenic
TTCAGAAAGGTAGCTAGAAA+AGG 0.498079 3_2:-9110274 Msa0394470:CDS
AGGTGGTATTTCGAGACAAT+AGG 0.503747 3_2:-9110409 Msa0394470:CDS
GGTTCAATGAGGACGAGATC+AGG 0.506463 3_2:-9109860 Msa0394470:CDS
AGGTAGCTAGAAAAGGTTCA+AGG 0.518283 3_2:-9110267 Msa0394470:CDS
CGGTTCCTTCTTTCCACAGG+TGG 0.523709 3_2:-9110426 Msa0394470:CDS
CCATCACCAAGTAATTTGAA+TGG 0.529421 3_2:-9110097 Msa0394470:CDS
AAATACCACCTGTGGAAAGA+AGG 0.529530 3_2:+9110421 None:intergenic
GTGATCAGATTACGAATGAC+AGG 0.539134 3_2:+9110196 None:intergenic
ACTTCCTCGACATTTGGCAT+TGG 0.540398 3_2:-9110127 Msa0394470:CDS
GCAAGAGAAGAAGAAAGTAA+AGG 0.545957 3_2:-9110020 Msa0394470:CDS
TGTCACAGCCTTGTGCTTGG+AGG 0.553859 3_2:-9110449 Msa0394470:CDS
GAATGTCACAGCCTTGTGCT+TGG 0.555477 3_2:-9110452 Msa0394470:CDS
AATCTACAGATAGAGGATCA+AGG 0.570567 3_2:-9109952 Msa0394470:CDS
GGTAGCTAGAAAAGGTTCAA+GGG 0.580926 3_2:-9110266 Msa0394470:CDS
ATCTTGTATGCGTATAGTGG+TGG 0.589645 3_2:-9110490 Msa0394470:CDS
AAAACGTCCGTAAGAAATGG+TGG 0.598377 3_2:-9109832 Msa0394470:CDS
CACTATACGCATACAAGATG+TGG 0.605232 3_2:+9110494 None:intergenic
TTGTCTCGAAATACCACCTG+TGG 0.605879 3_2:+9110413 None:intergenic
AGGAACCGCCTCCAAGCACA+AGG 0.610638 3_2:+9110441 None:intergenic
GTAGCTAGAAAAGGTTCAAG+GGG 0.613162 3_2:-9110265 Msa0394470:CDS
AAGATGTAGCAGCACCACCT+TGG 0.620183 3_2:+9109900 None:intergenic
AATTTGGACGGTATTAGCCA+AGG 0.623716 3_2:-9109917 Msa0394470:CDS
TGTCAGAGATGAATTCAGAA+AGG 0.624051 3_2:-9110287 Msa0394470:CDS
CCTGATTCAGGAAATTTGGA+CGG 0.627032 3_2:-9109929 Msa0394470:CDS
ATCGAATGCATGATATACCA+CGG 0.650850 3_2:+9109735 None:intergenic
ATCTGGTTAGTAATATGCCG+TGG 0.655337 3_2:-9109752 Msa0394470:CDS
TGGACCAATGCCAAATGTCG+AGG 0.656618 3_2:+9110123 None:intergenic
TTGGACGGTATTAGCCAAGG+TGG 0.682644 3_2:-9109914 Msa0394470:CDS
AAAAGGATATGGGTTCAATG+AGG 0.721400 3_2:-9109871 Msa0394470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATATTATTTGTCATC+TGG - chr3_2:9110508-9110527 Msa0394470:CDS 20.0%
!! GTATAATATTATTTGTCATC+TGG - chr3_2:9110508-9110527 Msa0394470:CDS 20.0%
! ATTTGTCCATTCAAATTACT+TGG + chr3_2:9110189-9110208 None:intergenic 25.0%
! CATAAAAAATCTACAGATAG+AGG - chr3_2:9110318-9110337 Msa0394470:CDS 25.0%
! ATTTGTCCATTCAAATTACT+TGG + chr3_2:9110189-9110208 None:intergenic 25.0%
! CATAAAAAATCTACAGATAG+AGG - chr3_2:9110318-9110337 Msa0394470:CDS 25.0%
! CATTACTGTTGTGTTTCTAA+AGG - chr3_2:9109757-9109776 Msa0394470:CDS 30.0%
ATTTCGAGACAATAGGTAAA+AGG - chr3_2:9109875-9109894 Msa0394470:CDS 30.0%
ACAATAGGTAAAAGGACTTA+CGG - chr3_2:9109883-9109902 Msa0394470:CDS 30.0%
TACTTCACAATTGTAGATGA+AGG - chr3_2:9109931-9109950 Msa0394470:CDS 30.0%
ACGTAAACTGAATTCATGTT+TGG + chr3_2:9110045-9110064 None:intergenic 30.0%
TTAGAGAATGTTTCACATAG+TGG - chr3_2:9110108-9110127 Msa0394470:CDS 30.0%
! TGCTAGATTTTCCCAATAAA+GGG + chr3_2:9110236-9110255 None:intergenic 30.0%
! TTGCTAGATTTTCCCAATAA+AGG + chr3_2:9110237-9110256 None:intergenic 30.0%
ATCTTCTTTGCAAAAGGATA+TGG - chr3_2:9110395-9110414 Msa0394470:CDS 30.0%
TCTTCTTTGCAAAAGGATAT+GGG - chr3_2:9110396-9110415 Msa0394470:CDS 30.0%
! CATTACTGTTGTGTTTCTAA+AGG - chr3_2:9109757-9109776 Msa0394470:CDS 30.0%
ATTTCGAGACAATAGGTAAA+AGG - chr3_2:9109875-9109894 Msa0394470:CDS 30.0%
ACAATAGGTAAAAGGACTTA+CGG - chr3_2:9109883-9109902 Msa0394470:CDS 30.0%
TACTTCACAATTGTAGATGA+AGG - chr3_2:9109931-9109950 Msa0394470:CDS 30.0%
ACGTAAACTGAATTCATGTT+TGG + chr3_2:9110045-9110064 None:intergenic 30.0%
TTAGAGAATGTTTCACATAG+TGG - chr3_2:9110108-9110127 Msa0394470:CDS 30.0%
! TGCTAGATTTTCCCAATAAA+GGG + chr3_2:9110236-9110255 None:intergenic 30.0%
! TTGCTAGATTTTCCCAATAA+AGG + chr3_2:9110237-9110256 None:intergenic 30.0%
ATCTTCTTTGCAAAAGGATA+TGG - chr3_2:9110395-9110414 Msa0394470:CDS 30.0%
TCTTCTTTGCAAAAGGATAT+GGG - chr3_2:9110396-9110415 Msa0394470:CDS 30.0%
CAATAGGTAAAAGGACTTAC+GGG - chr3_2:9109884-9109903 Msa0394470:CDS 35.0%
ACAATTGTAGATGAAGGTCT+TGG - chr3_2:9109937-9109956 Msa0394470:CDS 35.0%
!! CTTGGTAGTTCTTCAGTTTT+TGG - chr3_2:9109963-9109982 Msa0394470:CDS 35.0%
TGTCAGAGATGAATTCAGAA+AGG - chr3_2:9109990-9110009 Msa0394470:CDS 35.0%
TTCAGAAAGGTAGCTAGAAA+AGG - chr3_2:9110003-9110022 Msa0394470:CDS 35.0%
AGTTTACGTTCAAGAGAAAC+TGG - chr3_2:9110056-9110075 Msa0394470:CDS 35.0%
! TTTCACATAGTGGTAGTGAT+TGG - chr3_2:9110118-9110137 Msa0394470:CDS 35.0%
!! AAATTACTTGGTGATGGAGA+TGG + chr3_2:9110177-9110196 None:intergenic 35.0%
! CCATTCAAATTACTTGGTGA+TGG + chr3_2:9110183-9110202 None:intergenic 35.0%
CCATCACCAAGTAATTTGAA+TGG - chr3_2:9110180-9110199 Msa0394470:CDS 35.0%
! GCTAGATTTTCCCAATAAAG+GGG + chr3_2:9110235-9110254 None:intergenic 35.0%
GCAAGAGAAGAAGAAAGTAA+AGG - chr3_2:9110257-9110276 Msa0394470:CDS 35.0%
AATGAGAGATGTTGAGTTAG+AGG - chr3_2:9110293-9110312 Msa0394470:CDS 35.0%
AATCTACAGATAGAGGATCA+AGG - chr3_2:9110325-9110344 Msa0394470:CDS 35.0%
TGCTACATCTTCTTTGCAAA+AGG - chr3_2:9110389-9110408 Msa0394470:CDS 35.0%
AAAAGGATATGGGTTCAATG+AGG - chr3_2:9110406-9110425 Msa0394470:CDS 35.0%
! ATTTCTTACGGACGTTTTGA+GGG + chr3_2:9110443-9110462 None:intergenic 35.0%
ATCGAATGCATGATATACCA+CGG + chr3_2:9110545-9110564 None:intergenic 35.0%
CAATAGGTAAAAGGACTTAC+GGG - chr3_2:9109884-9109903 Msa0394470:CDS 35.0%
ACAATTGTAGATGAAGGTCT+TGG - chr3_2:9109937-9109956 Msa0394470:CDS 35.0%
!! CTTGGTAGTTCTTCAGTTTT+TGG - chr3_2:9109963-9109982 Msa0394470:CDS 35.0%
TGTCAGAGATGAATTCAGAA+AGG - chr3_2:9109990-9110009 Msa0394470:CDS 35.0%
TTCAGAAAGGTAGCTAGAAA+AGG - chr3_2:9110003-9110022 Msa0394470:CDS 35.0%
AGTTTACGTTCAAGAGAAAC+TGG - chr3_2:9110056-9110075 Msa0394470:CDS 35.0%
! TTTCACATAGTGGTAGTGAT+TGG - chr3_2:9110118-9110137 Msa0394470:CDS 35.0%
!! AAATTACTTGGTGATGGAGA+TGG + chr3_2:9110177-9110196 None:intergenic 35.0%
! CCATTCAAATTACTTGGTGA+TGG + chr3_2:9110183-9110202 None:intergenic 35.0%
CCATCACCAAGTAATTTGAA+TGG - chr3_2:9110180-9110199 Msa0394470:CDS 35.0%
! GCTAGATTTTCCCAATAAAG+GGG + chr3_2:9110235-9110254 None:intergenic 35.0%
GCAAGAGAAGAAGAAAGTAA+AGG - chr3_2:9110257-9110276 Msa0394470:CDS 35.0%
AATGAGAGATGTTGAGTTAG+AGG - chr3_2:9110293-9110312 Msa0394470:CDS 35.0%
AATCTACAGATAGAGGATCA+AGG - chr3_2:9110325-9110344 Msa0394470:CDS 35.0%
TGCTACATCTTCTTTGCAAA+AGG - chr3_2:9110389-9110408 Msa0394470:CDS 35.0%
AAAAGGATATGGGTTCAATG+AGG - chr3_2:9110406-9110425 Msa0394470:CDS 35.0%
! ATTTCTTACGGACGTTTTGA+GGG + chr3_2:9110443-9110462 None:intergenic 35.0%
ATCGAATGCATGATATACCA+CGG + chr3_2:9110545-9110564 None:intergenic 35.0%
CACTATACGCATACAAGATG+TGG + chr3_2:9109786-9109805 None:intergenic 40.0%
CACATCTTGTATGCGTATAG+TGG - chr3_2:9109784-9109803 Msa0394470:CDS 40.0%
ATCTTGTATGCGTATAGTGG+TGG - chr3_2:9109787-9109806 Msa0394470:CDS 40.0%
AAATACCACCTGTGGAAAGA+AGG + chr3_2:9109859-9109878 None:intergenic 40.0%
AGGTGGTATTTCGAGACAAT+AGG - chr3_2:9109868-9109887 Msa0394470:CDS 40.0%
!! AAGGACTTACGGGTTTTTAG+TGG - chr3_2:9109894-9109913 Msa0394470:CDS 40.0%
!!! TACGGGTTTTTAGTGGAAGA+TGG - chr3_2:9109901-9109920 Msa0394470:CDS 40.0%
! AGATGAAGGTCTTGGTAACT+TGG - chr3_2:9109945-9109964 Msa0394470:CDS 40.0%
AGGTAGCTAGAAAAGGTTCA+AGG - chr3_2:9110010-9110029 Msa0394470:CDS 40.0%
GGTAGCTAGAAAAGGTTCAA+GGG - chr3_2:9110011-9110030 Msa0394470:CDS 40.0%
GTAGCTAGAAAAGGTTCAAG+GGG - chr3_2:9110012-9110031 Msa0394470:CDS 40.0%
GTGATCAGATTACGAATGAC+AGG + chr3_2:9110084-9110103 None:intergenic 40.0%
TTCAACCAAAGCCCCTTTAT+TGG - chr3_2:9110221-9110240 Msa0394470:CDS 40.0%
TCAACCAAAGCCCCTTTATT+GGG - chr3_2:9110222-9110241 Msa0394470:CDS 40.0%
! TTTTCCCAATAAAGGGGCTT+TGG + chr3_2:9110229-9110248 None:intergenic 40.0%
AAGGCCTGATTCAGGAAATT+TGG - chr3_2:9110344-9110363 Msa0394470:CDS 40.0%
CCTGATTCAGGAAATTTGGA+CGG - chr3_2:9110348-9110367 Msa0394470:CDS 40.0%
AATTTGGACGGTATTAGCCA+AGG - chr3_2:9110360-9110379 Msa0394470:CDS 40.0%
! CATTTCTTACGGACGTTTTG+AGG + chr3_2:9110444-9110463 None:intergenic 40.0%
CTCAAAACGTCCGTAAGAAA+TGG - chr3_2:9110442-9110461 Msa0394470:CDS 40.0%
AAAACGTCCGTAAGAAATGG+TGG - chr3_2:9110445-9110464 Msa0394470:CDS 40.0%
TAGCTAGAACAATGCGTACT+TGG + chr3_2:9110473-9110492 None:intergenic 40.0%
ATCTGGTTAGTAATATGCCG+TGG - chr3_2:9110525-9110544 Msa0394470:CDS 40.0%
CACTATACGCATACAAGATG+TGG + chr3_2:9109786-9109805 None:intergenic 40.0%
CACATCTTGTATGCGTATAG+TGG - chr3_2:9109784-9109803 Msa0394470:CDS 40.0%
ATCTTGTATGCGTATAGTGG+TGG - chr3_2:9109787-9109806 Msa0394470:CDS 40.0%
AAATACCACCTGTGGAAAGA+AGG + chr3_2:9109859-9109878 None:intergenic 40.0%
AGGTGGTATTTCGAGACAAT+AGG - chr3_2:9109868-9109887 Msa0394470:CDS 40.0%
!! AAGGACTTACGGGTTTTTAG+TGG - chr3_2:9109894-9109913 Msa0394470:CDS 40.0%
!!! TACGGGTTTTTAGTGGAAGA+TGG - chr3_2:9109901-9109920 Msa0394470:CDS 40.0%
! AGATGAAGGTCTTGGTAACT+TGG - chr3_2:9109945-9109964 Msa0394470:CDS 40.0%
AGGTAGCTAGAAAAGGTTCA+AGG - chr3_2:9110010-9110029 Msa0394470:CDS 40.0%
GGTAGCTAGAAAAGGTTCAA+GGG - chr3_2:9110011-9110030 Msa0394470:CDS 40.0%
GTAGCTAGAAAAGGTTCAAG+GGG - chr3_2:9110012-9110031 Msa0394470:CDS 40.0%
GTGATCAGATTACGAATGAC+AGG + chr3_2:9110084-9110103 None:intergenic 40.0%
TTCAACCAAAGCCCCTTTAT+TGG - chr3_2:9110221-9110240 Msa0394470:CDS 40.0%
TCAACCAAAGCCCCTTTATT+GGG - chr3_2:9110222-9110241 Msa0394470:CDS 40.0%
! TTTTCCCAATAAAGGGGCTT+TGG + chr3_2:9110229-9110248 None:intergenic 40.0%
AAGGCCTGATTCAGGAAATT+TGG - chr3_2:9110344-9110363 Msa0394470:CDS 40.0%
CCTGATTCAGGAAATTTGGA+CGG - chr3_2:9110348-9110367 Msa0394470:CDS 40.0%
AATTTGGACGGTATTAGCCA+AGG - chr3_2:9110360-9110379 Msa0394470:CDS 40.0%
! CATTTCTTACGGACGTTTTG+AGG + chr3_2:9110444-9110463 None:intergenic 40.0%
CTCAAAACGTCCGTAAGAAA+TGG - chr3_2:9110442-9110461 Msa0394470:CDS 40.0%
AAAACGTCCGTAAGAAATGG+TGG - chr3_2:9110445-9110464 Msa0394470:CDS 40.0%
TAGCTAGAACAATGCGTACT+TGG + chr3_2:9110473-9110492 None:intergenic 40.0%
ATCTGGTTAGTAATATGCCG+TGG - chr3_2:9110525-9110544 Msa0394470:CDS 40.0%
TTGTCTCGAAATACCACCTG+TGG + chr3_2:9109867-9109886 None:intergenic 45.0%
GACGAAACTTCCTCGACATT+TGG - chr3_2:9110144-9110163 Msa0394470:CDS 45.0%
ACTTCCTCGACATTTGGCAT+TGG - chr3_2:9110150-9110169 Msa0394470:CDS 45.0%
CCGTCCAAATTTCCTGAATC+AGG + chr3_2:9110351-9110370 None:intergenic 45.0%
TTGTCTCGAAATACCACCTG+TGG + chr3_2:9109867-9109886 None:intergenic 45.0%
GACGAAACTTCCTCGACATT+TGG - chr3_2:9110144-9110163 Msa0394470:CDS 45.0%
ACTTCCTCGACATTTGGCAT+TGG - chr3_2:9110150-9110169 Msa0394470:CDS 45.0%
CCGTCCAAATTTCCTGAATC+AGG + chr3_2:9110351-9110370 None:intergenic 45.0%
! GAATGTCACAGCCTTGTGCT+TGG - chr3_2:9109825-9109844 Msa0394470:CDS 50.0%
TGGACCAATGCCAAATGTCG+AGG + chr3_2:9110157-9110176 None:intergenic 50.0%
AGAGGATCAAGGCCTGATTC+AGG - chr3_2:9110336-9110355 Msa0394470:CDS 50.0%
TTGGACGGTATTAGCCAAGG+TGG - chr3_2:9110363-9110382 Msa0394470:CDS 50.0%
AAGATGTAGCAGCACCACCT+TGG + chr3_2:9110380-9110399 None:intergenic 50.0%
GGTTCAATGAGGACGAGATC+AGG - chr3_2:9110417-9110436 Msa0394470:CDS 50.0%
CTTGGCGCCACCATTTCTTA+CGG + chr3_2:9110455-9110474 None:intergenic 50.0%
! GAATGTCACAGCCTTGTGCT+TGG - chr3_2:9109825-9109844 Msa0394470:CDS 50.0%
TGGACCAATGCCAAATGTCG+AGG + chr3_2:9110157-9110176 None:intergenic 50.0%
AGAGGATCAAGGCCTGATTC+AGG - chr3_2:9110336-9110355 Msa0394470:CDS 50.0%
TTGGACGGTATTAGCCAAGG+TGG - chr3_2:9110363-9110382 Msa0394470:CDS 50.0%
AAGATGTAGCAGCACCACCT+TGG + chr3_2:9110380-9110399 None:intergenic 50.0%
GGTTCAATGAGGACGAGATC+AGG - chr3_2:9110417-9110436 Msa0394470:CDS 50.0%
CTTGGCGCCACCATTTCTTA+CGG + chr3_2:9110455-9110474 None:intergenic 50.0%
! TGTCACAGCCTTGTGCTTGG+AGG - chr3_2:9109828-9109847 Msa0394470:CDS 55.0%
AGGCGGTTCCTTCTTTCCAC+AGG - chr3_2:9109848-9109867 Msa0394470:CDS 55.0%
CGGTTCCTTCTTTCCACAGG+TGG - chr3_2:9109851-9109870 Msa0394470:CDS 55.0%
! TGTCACAGCCTTGTGCTTGG+AGG - chr3_2:9109828-9109847 Msa0394470:CDS 55.0%
AGGCGGTTCCTTCTTTCCAC+AGG - chr3_2:9109848-9109867 Msa0394470:CDS 55.0%
CGGTTCCTTCTTTCCACAGG+TGG - chr3_2:9109851-9109870 Msa0394470:CDS 55.0%
! CACAGCCTTGTGCTTGGAGG+CGG - chr3_2:9109831-9109850 Msa0394470:CDS 60.0%
AGGAACCGCCTCCAAGCACA+AGG + chr3_2:9109839-9109858 None:intergenic 60.0%
! CACAGCCTTGTGCTTGGAGG+CGG - chr3_2:9109831-9109850 Msa0394470:CDS 60.0%
AGGAACCGCCTCCAAGCACA+AGG + chr3_2:9109839-9109858 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 9109733 9110566 9109733 ID=Msa0394470;Name=Msa0394470
chr3_2 mRNA 9109733 9110566 9109733 ID=Msa0394470-mRNA-1;Parent=Msa0394470;Name=Msa0394470-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|277
chr3_2 exon 9109733 9110566 9109733 ID=Msa0394470-mRNA-1:exon:2449;Parent=Msa0394470-mRNA-1
chr3_2 CDS 9109733 9110566 9109733 ID=Msa0394470-mRNA-1:cds;Parent=Msa0394470-mRNA-1
Gene Sequence

>Msa0394470

ATGGATTCAATTCAAAATAAAGTTCATTACTGTTGTGTTTCTAAAGGTAGCCACATCTTGTATGCGTATAGTGGTGGAGATAAAGAAGTTGAGAATGTCACAGCCTTGTGCTTGGAGGCGGTTCCTTCTTTCCACAGGTGGTATTTCGAGACAATAGGTAAAAGGACTTACGGGTTTTTAGTGGAAGATGGATATGTTTACTTCACAATTGTAGATGAAGGTCTTGGTAACTTGGTAGTTCTTCAGTTTTTGGAACATGTCAGAGATGAATTCAGAAAGGTAGCTAGAAAAGGTTCAAGGGGATTTTCGCCAAACATGAATTCAGTTTACGTTCAAGAGAAACTGGTTCCTGTCATTCGTAATCTGATCACTTCATTAGAGAATGTTTCACATAGTGGTAGTGATTGGAGAGACGAAACTTCCTCGACATTTGGCATTGGTCCATCTCCATCACCAAGTAATTTGAATGGACAAATTGAAAATGTTGTTTCAACCAAAGCCCCTTTATTGGGAAAATCTAGCAAGCAAGAGAAGAAGAAAGTAAAGGATCATGTGATTGCAATGAGAGATGTTGAGTTAGAGGAGCATAAAAAATCTACAGATAGAGGATCAAGGCCTGATTCAGGAAATTTGGACGGTATTAGCCAAGGTGGTGCTGCTACATCTTCTTTGCAAAAGGATATGGGTTCAATGAGGACGAGATCAGGCCCTCAAAACGTCCGTAAGAAATGGTGGCGCCAAGTACGCATTGTTCTAGCTATCGATGCAGCTGTATGTATAATATTATTTGTCATCTGGTTAGTAATATGCCGTGGTATATCATGCATTCGATAG

Protein sequence

>Msa0394470

MDSIQNKVHYCCVSKGSHILYAYSGGDKEVENVTALCLEAVPSFHRWYFETIGKRTYGFLVEDGYVYFTIVDEGLGNLVVLQFLEHVRDEFRKVARKGSRGFSPNMNSVYVQEKLVPVIRNLITSLENVSHSGSDWRDETSSTFGIGPSPSPSNLNGQIENVVSTKAPLLGKSSKQEKKKVKDHVIAMRDVELEEHKKSTDRGSRPDSGNLDGISQGGAATSSLQKDMGSMRTRSGPQNVRKKWWRQVRIVLAIDAAVCIILFVIWLVICRGISCIR*