AlfalfaGEDB | Msa1460750

M. sativa cultivar zhongmu-4 / Msa1460750

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460750	XP_013447314.1	89.855	207	21	0	24	230	1	207	7.26e-137	392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460750	I3S9W1	89.855	207	21	0	24	230	1	207	3.47e-137	392

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa1460750	0.836535	8.841655e-57	-8.615850e-47
Msa0002250	Msa1460750	0.813571	2.392621e-51	-8.615850e-47
Msa0003630	Msa1460750	0.821552	3.799155e-53	-8.615850e-47
Msa0007440	Msa1460750	0.800458	1.427432e-48	-8.615850e-47
Msa0007470	Msa1460750	0.835280	1.839109e-56	-8.615850e-47
Msa0010490	Msa1460750	0.818139	2.290920e-52	-8.615850e-47
Msa0010500	Msa1460750	0.802930	4.440748e-49	-8.615850e-47
Msa0012710	Msa1460750	0.861128	1.275554e-63	-8.615850e-47
Msa0015090	Msa1460750	0.847709	9.743329e-60	-8.615850e-47
Msa0016510	Msa1460750	0.803799	2.933706e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1460750	MtrunA17_Chr8g0390061	89.855	207	21	0	24	230	1	207	6.68e-141	392
Msa1460750	MtrunA17_Chr8g0390051	60.924	238	62	3	24	230	1	238	5.33e-98	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 35 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTCTAACGTAAAAC+AGG	0.453639	tig0041068:-4301	Msa1460750:CDS
AAATAATGGTGTAATAGATG+AGG	0.639630	tig0041068:-3980	Msa1460750:CDS
AAGACAGAAACAAAGAAATT+TGG	0.303541	tig0041068:-4222	Msa1460750:CDS
AATACTGAACACCAAGAACA+AGG	0.614953	tig0041068:-4927	None:intergenic
AATGGTGTTCCGCCTGACGG+TGG	0.691121	tig0041068:-3937	Msa1460750:CDS
ACAACTTGGAGTTGAAGAGA+AGG	0.600247	tig0041068:-4040	Msa1460750:CDS
ACTGTTCATGTTGATACTTC+AGG	0.350166	tig0041068:-3763	Msa1460750:CDS
AGAATGGAGTATCAATCTCT+TGG	0.471194	tig0041068:-4339	Msa1460750:CDS
AGTATTTATGAAGTCACGTA+TGG	0.536293	tig0041068:-3865	Msa1460750:CDS
ATAAATTGTTTGGACGGAAA+GGG	0.528425	tig0041068:-4167	Msa1460750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGATAGTTAAGAGTTGT+TGG	-	tig0041068:3987-4006	Msa1460750:CDS	30.0%
TAGATCAGATAAACATTCAG+AGG	+	tig0041068:4275-4294	None:intergenic	30.0%
GTTGAATTAATGCAGAAGAA+TGG	-	tig0041068:4303-4322	Msa1460750:CDS	30.0%
ATAAATTGTTTGGACGGAAA+GGG	-	tig0041068:4491-4510	Msa1460750:intron	30.0%
AAACAAGATGCAGAAAAATG+AGG	-	tig0041068:4642-4661	Msa1460750:intron	30.0%
CAAAGCTTTCATGATGAAAA+TGG	-	tig0041068:4703-4722	Msa1460750:intron	30.0%
AGTATTTATGAAGTCACGTA+TGG	-	tig0041068:4793-4812	Msa1460750:intron	30.0%
GTAGACGAAGAAATTAATAC+AGG	-	tig0041068:4868-4887	Msa1460750:intron	30.0%
GATAGATAGTTAAGAGTTGT+TGG	-	tig0041068:3987-4006	Msa1460750:CDS	30.0%
TAGATCAGATAAACATTCAG+AGG	+	tig0041068:4275-4294	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0041068	gene	3735	4945	3735	ID=Msa1460750;Name=Msa1460750
tig0041068	mRNA	3735	4945	3735	ID=Msa1460750-mRNA-1;Parent=Msa1460750;Name=Msa1460750-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|1\|0\|1\|0\|0\|2\|0\|230
tig0041068	exon	4881	4945	4881	ID=Msa1460750-mRNA-1:exon:22885;Parent=Msa1460750-mRNA-1
tig0041068	exon	3735	4362	3735	ID=Msa1460750-mRNA-1:exon:22884;Parent=Msa1460750-mRNA-1
tig0041068	CDS	4881	4945	4881	ID=Msa1460750-mRNA-1:cds;Parent=Msa1460750-mRNA-1
tig0041068	CDS	3735	4362	3735	ID=Msa1460750-mRNA-1:cds;Parent=Msa1460750-mRNA-1

Gene Sequence

>Msa1460750

CTGAACACCAAGAACAAGGAAGACAAGAAAGAAACCACTTTCTCCGTTGAGAAAACAAAACAAAGAAGAATGGAGTATCAATCTCTTGGAAGGTACCAAAAACCAAAAGGGTCTAACGTAAAACAGGTATTGAAGATGATGCTACTTTTGGCTGTTTGTGCCTGGTTGTTATATCAAATCAAGAAGACAGAAACAAAGAAATTTGGTATTCAAATCAAGCTTGTTGCTGGATGTGGACATAAATTGTTTGGACGGAAAGGGATGCTATCACGTCCCGATGAAAGAGCTTTTCCTGACTCAGGAAAGGTAGATTCTGTTGGAGAAGTAACAAATGAGTTTAAAAGTAATGACAAAGAAAAAGAAGTACAACTTGGAGTTGAAGAGAAGGGAAACAAGATGCAGAAAAATGAGGTGGAGAGTGCCGCAAATAATGGTGTAATAGATGAGGTCCAAAGCTTTCATGATGAAAATGGTGTTCCGCCTGACGGTGGTGAAGAAAACATGTCAACTTTTAGAATAGTAAATTGGCTTAAAAAGATCAGTATTTATGAAGTCACGTATGGAGAAGATAATGATATTGAAATGAATTTGGAAGGAACGACGAATGCTACAACAGTAGACGAAGAAATTAATACAGGAACTACTGTTCATGTTGATACTTCAGGTTTGCAATCAAGAAATAGGTGGAGATAA

Protein sequence

>Msa1460750

LNTKNKEDKKETTFSVEKTKQRRMEYQSLGRYQKPKGSNVKQVLKMMLLLAVCAWLLYQIKKTETKKFGIQIKLVAGCGHKLFGRKGMLSRPDERAFPDSGKVDSVGEVTNEFKSNDKEKEVQLGVEEKGNKMQKNEVESAANNGVIDEVQSFHDENGVPPDGGEENMSTFRIVNWLKKISIYEVTYGEDNDIEMNLEGTTNATTVDEEINTGTTVHVDTSGLQSRNRWR*