AlfalfaGEDB | Msa0190530

M. sativa cultivar zhongmu-4 / Msa0190530

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190530	XP_003593344.3	96.034	353	14	0	9	361	1	353	0.0	705

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190530	sp\|Q9T072\|BH025_ARATH	56.757	185	72	4	181	361	148	328	1.59e-58	195

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190530	A0A396J145	96.034	353	14	0	9	361	1	353	0.0	705

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0190530	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0190530	0.810858	9.351342e-51	-8.615850e-47
Msa0006510	Msa0190530	0.812569	3.969811e-51	-8.615850e-47
Msa0007990	Msa0190530	0.839695	1.358550e-57	-8.615850e-47
Msa0009790	Msa0190530	0.822745	2.009758e-53	-8.615850e-47
Msa0012710	Msa0190530	0.801016	1.098555e-48	-8.615850e-47
Msa0026450	Msa0190530	0.805663	1.197484e-49	-8.615850e-47
Msa0029240	Msa0190530	0.803873	2.831204e-49	-8.615850e-47
Msa0042550	Msa0190530	0.870022	1.997171e-66	-8.615850e-47
Msa0044330	Msa0190530	0.809451	1.880492e-50	-8.615850e-47
Msa0055070	Msa0190530	0.800622	1.322026e-48	-8.615850e-47

Showing 1 to 10 of 441 entries

Previous1 2 3 4 5…45Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190530	MtrunA17_Chr2g0280161	96.034	353	14	0	9	361	1	353	0.0	705
Msa0190530	MtrunA17_Chr4g0049331	55.587	349	111	10	15	361	4	310	2.33e-115	337
Msa0190530	MtrunA17_Chr4g0054561	39.368	348	175	13	13	353	2	320	2.47e-59	194
Msa0190530	MtrunA17_Chr5g0400661	38.192	343	166	7	28	354	18	330	1.32e-58	192
Msa0190530	MtrunA17_Chr4g0054551	39.368	348	175	13	13	353	2	320	3.47e-58	191
Msa0190530	MtrunA17_Chr5g0400621	52.632	190	87	2	174	361	144	332	7.76e-55	183
Msa0190530	MtrunA17_Chr5g0400671	34.393	346	199	10	13	356	2	321	1.39e-50	171
Msa0190530	MtrunA17_Chr4g0054581	44.643	224	107	5	146	361	163	377	3.04e-49	169
Msa0190530	MtrunA17_Chr8g0336681	42.081	221	116	4	142	354	115	331	2.27e-48	166
Msa0190530	MtrunA17_Chr6g0468491	46.667	195	99	4	169	361	121	312	2.89e-48	165

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0190530	AT4G37850.2	56.757	185	72	4	181	361	148	328	1.61e-59	195
Msa0190530	AT4G37850.1	56.757	185	72	4	181	361	148	328	1.61e-59	195
Msa0190530	AT2G22760.1	49.153	177	87	3	183	356	117	293	1.66e-48	166
Msa0190530	AT2G22770.1	46.809	188	86	2	185	358	132	319	7.15e-45	157
Msa0190530	AT2G22750.2	50.811	185	84	3	181	360	122	304	3.69e-43	152
Msa0190530	AT2G22750.3	50.811	185	84	3	181	360	150	332	7.40e-43	152
Msa0190530	AT2G22750.5	50.811	185	84	3	181	360	146	328	9.43e-43	151
Msa0190530	AT2G22750.1	50.811	185	83	4	181	360	122	303	1.00e-41	148
Msa0190530	AT2G22760.2	47.468	158	81	2	183	338	117	274	1.66e-41	147
Msa0190530	AT2G22750.4	50.811	185	83	4	181	360	150	331	1.85e-41	148

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 59 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTTAAGAAATAACAGC+TGG	0.500916	2_1:+6021820	Msa0190530:CDS
AACTCTGCAGGGGATAATGG+AGG	0.663168	2_1:+6021626	Msa0190530:intron
AACTTAACTGCTTCTGCTTT+TGG	0.208058	2_1:+6021702	Msa0190530:CDS
AAGTAATAATCATGTTTGCA+TGG	0.557909	2_1:+6023607	Msa0190530:three_prime_UTR
AATAAATATCTTACCATTTC+AGG	0.175967	2_1:-6021394	None:intergenic
AATAATCATGTTTGCATGGC+GGG	0.428743	2_1:+6023611	Msa0190530:three_prime_UTR
AATAGCAGTTCCTTGACTTT+TGG	0.241912	2_1:+6023031	Msa0190530:CDS
ACCGGTCTTTCGTTTCCGGT+AGG	0.581772	2_1:-6021795	None:intergenic
AGAGAAAGTGAGTGTTCTTG+AGG	0.506732	2_1:+6022769	Msa0190530:CDS
AGCAATGATGGTTATATCAA+GGG	0.578216	2_1:-6023062	None:intergenic

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAGCAATTACCCAAATATTG+TGG	-	chr2_1:6020626-6020645	None:intergenic	30.0%
TAGGTGGAAAAATGAAGAAA+AGG	+	chr2_1:6020747-6020766	Msa0190530:intron	30.0%
AGGTGGAAAAATGAAGAAAA+GGG	+	chr2_1:6020748-6020767	Msa0190530:intron	30.0%
AAATTATCAAAGGACCATTG+TGG	-	chr2_1:6020825-6020844	None:intergenic	30.0%
AAGGGTTTGCAAATTATCAA+AGG	-	chr2_1:6020835-6020854	None:intergenic	30.0%
TAGTGAACAAAACAAAACTC+AGG	+	chr2_1:6021099-6021118	Msa0190530:intron	30.0%
TATTGGTATCAATAGAGCTT+AGG	-	chr2_1:6021683-6021702	None:intergenic	30.0%
GTTGTTGAAGTTTGGATTAT+TGG	-	chr2_1:6021754-6021773	None:intergenic	30.0%
AACAGTTAAGAAATAACAGC+TGG	+	chr2_1:6021820-6021839	Msa0190530:CDS	30.0%
TCATATTGTGTATCTGATGT+TGG	-	chr2_1:6021864-6021883	None:intergenic	30.0%

Showing 1 to 10 of 149 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	6020613	6023751	6020613	ID=Msa0190530;Name=Msa0190530
chr2_1	mRNA	6020613	6023751	6020613	ID=Msa0190530-mRNA-1;Parent=Msa0190530;Name=Msa0190530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.75\|0.6\|0.8\|1\|1\|5\|207\|361
chr2_1	exon	6020613	6020635	6020613	ID=Msa0190530-mRNA-1:exon:2709;Parent=Msa0190530-mRNA-1
chr2_1	exon	6021354	6021402	6021354	ID=Msa0190530-mRNA-1:exon:2710;Parent=Msa0190530-mRNA-1
chr2_1	exon	6021636	6022202	6021636	ID=Msa0190530-mRNA-1:exon:2711;Parent=Msa0190530-mRNA-1
chr2_1	exon	6022716	6023087	6022716	ID=Msa0190530-mRNA-1:exon:2712;Parent=Msa0190530-mRNA-1
chr2_1	exon	6023470	6023751	6023470	ID=Msa0190530-mRNA-1:exon:2713;Parent=Msa0190530-mRNA-1
chr2_1	CDS	6020613	6020635	6020613	ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1	CDS	6021354	6021402	6021354	ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1	CDS	6021636	6022202	6021636	ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1	CDS	6022716	6023087	6022716	ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1	CDS	6023470	6023544	6023470	ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1	three_prime_UTR	6023545	6023751	6023545	ID=Msa0190530-mRNA-1:three_prime_utr;Parent=Msa0190530-mRNA-1

Gene Sequence

>Msa0190530

ATGCTAGCTTCCACAATATTTGGGATGAGTTCTCATATGGAGATTTCATCTATCAGAGGGTTACCTGAAATGGGGATAATGGAGGATCCTAATTTTTTACACCACTTCAATAATCACCTAAGCTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATATTTTGTCCAATAATCCAAACTTCAACAACAAAACATGCATGGAGACTTCGCCTACCGGAAACGAAAGACCGGTGAAACAGTTAAGAAATAACAGCTGGAATTACAACAATAGTCCTCCAACATCAGATACACAATATGATAATTGTTGCTCTAATAATCTTCTTTCCTTTGCTGATTTGAATTACACAAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCGAAAATCGATAACACTAGTACTCTTGCAAACATGTTGATCACTCAAGGTAACTTGTTTGGGAATCAAAACCATGTCTTTAAAGCTGTTCAAGAAGCTAAAGATATTGAGAATCGTCCTAATAAAATCTCTCAAGCTCATGATCACATCGTAGCGGAGAGGAAGCGTCGCGAGAAGCTTAGCCAACGATTCATCGCTCTGTCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTAAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAAAAAAGGAAGAAAACTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTATTAATGATGCTGAAAACTCTTGTTCAGACACTGATAGTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGACTACATTGTTTGAAGAGTCAAGGAGTTATTGAGAAAATTATGAGTGAAATTGAGAAACTTCATCTGAAAGTCATCAATAGCAGTTCCTTGACTTTTGGGAATTTCACCCTTGATATAACCATCATTGCTCAGATGGATGTGGAATTTTGCATGACAGTGAAGGATCTTGTGAGGAAGCTACGTTCAGCATATTCATCTTTCATGTGA

Protein sequence

>Msa0190530

MLASTIFGMSSHMEISSIRGLPEMGIMEDPNFLHHFNNHLSSIDTNNLTASAFGDALQKHILSNNPNFNNKTCMETSPTGNERPVKQLRNNSWNYNNSPPTSDTQYDNCCSNNLLSFADLNYTNQLGLLKPKSEMVCPKIDNTSTLANMLITQGNLFGNQNHVFKAVQEAKDIENRPNKISQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSQLSINDAENSCSDTDSTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKIMSEIEKLHLKVINSSSLTFGNFTLDITIIAQMDVEFCMTVKDLVRKLRSAYSSFM*