AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0190530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190530 MtrunA17_Chr2g0280161 96.034 353 14 0 9 361 1 353 0.0 705
Msa0190530 MtrunA17_Chr4g0049331 55.587 349 111 10 15 361 4 310 2.33e-115 337
Msa0190530 MtrunA17_Chr4g0054561 39.368 348 175 13 13 353 2 320 2.47e-59 194
Msa0190530 MtrunA17_Chr5g0400661 38.192 343 166 7 28 354 18 330 1.32e-58 192
Msa0190530 MtrunA17_Chr4g0054551 39.368 348 175 13 13 353 2 320 3.47e-58 191
Msa0190530 MtrunA17_Chr5g0400621 52.632 190 87 2 174 361 144 332 7.76e-55 183
Msa0190530 MtrunA17_Chr5g0400671 34.393 346 199 10 13 356 2 321 1.39e-50 171
Msa0190530 MtrunA17_Chr4g0054581 44.643 224 107 5 146 361 163 377 3.04e-49 169
Msa0190530 MtrunA17_Chr8g0336681 42.081 221 116 4 142 354 115 331 2.27e-48 166
Msa0190530 MtrunA17_Chr6g0468491 46.667 195 99 4 169 361 121 312 2.89e-48 165
Msa0190530 MtrunA17_Chr4g0054571 54.749 179 69 4 185 354 150 325 3.93e-48 165
Msa0190530 MtrunA17_Chr2g0333621 50.847 177 81 2 181 354 134 307 2.59e-46 160
Msa0190530 MtrunA17_Chr2g0307131 43.842 203 107 3 159 361 159 354 6.14e-46 160
Msa0190530 MtrunA17_Chr2g0307141 46.524 187 83 4 183 361 181 358 1.48e-44 157
Msa0190530 MtrunA17_Chr7g0225901 45.304 181 95 2 159 339 65 241 3.85e-43 150
Msa0190530 MtrunA17_Chr4g0033391 43.548 186 99 2 176 361 140 319 6.15e-43 152
Msa0190530 MtrunA17_Chr4g0054621 39.904 208 107 3 164 361 141 340 1.77e-41 148
Msa0190530 MtrunA17_Chr2g0333641 46.927 179 92 2 181 359 133 308 1.68e-39 142
Msa0190530 MtrunA17_Chr4g0002781 46.067 178 90 2 181 354 170 345 1.82e-39 143
Msa0190530 MtrunA17_Chr4g0002801 45.161 186 93 3 176 354 143 326 2.25e-39 142
Msa0190530 MtrunA17_Chr4g0033291 41.627 209 111 3 159 360 122 326 5.74e-39 141
Msa0190530 MtrunA17_Chr2g0333611 42.697 178 89 5 182 354 42 211 9.31e-39 137
Msa0190530 MtrunA17_Chr5g0400641 46.452 155 82 1 188 342 1 154 1.86e-38 135
Msa0190530 MtrunA17_Chr4g0033281 40.952 210 112 3 159 361 120 324 1.67e-37 137
Msa0190530 MtrunA17_Chr2g0333541 43.094 181 100 2 176 354 85 264 1.01e-35 131
Msa0190530 MtrunA17_Chr6g0468461 41.765 170 84 2 169 338 157 311 1.03e-32 125
Msa0190530 MtrunA17_Chr7g0249811 41.860 172 90 1 183 354 163 324 3.55e-31 120
Msa0190530 MtrunA17_Chr7g0233441 38.816 152 82 2 208 359 57 197 1.38e-25 102
Msa0190530 MtrunA17_Chr4g0002831 35.260 173 99 4 188 359 45 205 3.63e-24 98.6
Msa0190530 MtrunA17_Chr4g0002851 37.500 152 76 2 208 359 65 197 2.43e-23 95.9
Msa0190530 MtrunA17_Chr1g0185621 34.395 157 93 3 185 332 475 630 6.24e-20 91.3
Msa0190530 MtrunA17_Chr7g0275821 31.618 136 84 2 185 320 252 378 2.36e-16 79.7
Msa0190530 MtrunA17_Chr8g0366751 33.143 175 106 3 158 321 434 608 9.11e-16 78.6
Msa0190530 MtrunA17_Chr5g0411341 31.333 150 87 3 185 321 493 639 4.11e-15 76.6
Msa0190530 MtrunA17_Chr8g0346161 32.168 143 85 3 185 321 291 427 7.77e-15 75.5
Msa0190530 MtrunA17_Chr3g0131691 28.846 156 102 2 186 332 299 454 1.15e-14 75.1
Msa0190530 MtrunA17_Chr7g0260841 54.386 57 26 0 185 241 355 411 6.47e-14 72.8
Msa0190530 MtrunA17_Chr8g0346151 27.711 166 99 3 185 338 279 435 1.22e-13 71.6
Msa0190530 MtrunA17_Chr7g0252041 28.302 159 99 3 187 332 288 444 2.64e-13 70.9
Msa0190530 MtrunA17_Chr8g0365711 25.843 178 110 5 174 335 227 398 1.05e-11 65.9
Msa0190530 MtrunA17_Chr8g0386921 25.962 208 121 5 182 360 403 606 4.47e-11 64.3
Msa0190530 MtrunA17_Chr1g0211081 38.710 93 53 2 176 265 309 400 4.91e-11 63.9
Msa0190530 MtrunA17_Chr2g0298751 49.091 55 28 0 186 240 53 107 8.97e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0190530 AT4G37850.2 56.757 185 72 4 181 361 148 328 1.61e-59 195
Msa0190530 AT4G37850.1 56.757 185 72 4 181 361 148 328 1.61e-59 195
Msa0190530 AT2G22760.1 49.153 177 87 3 183 356 117 293 1.66e-48 166
Msa0190530 AT2G22770.1 46.809 188 86 2 185 358 132 319 7.15e-45 157
Msa0190530 AT2G22750.2 50.811 185 84 3 181 360 122 304 3.69e-43 152
Msa0190530 AT2G22750.3 50.811 185 84 3 181 360 150 332 7.40e-43 152
Msa0190530 AT2G22750.5 50.811 185 84 3 181 360 146 328 9.43e-43 151
Msa0190530 AT2G22750.1 50.811 185 83 4 181 360 122 303 1.00e-41 148
Msa0190530 AT2G22760.2 47.468 158 81 2 183 338 117 274 1.66e-41 147
Msa0190530 AT2G22750.4 50.811 185 83 4 181 360 150 331 1.85e-41 148
Msa0190530 AT1G32640.1 36.025 161 87 4 173 321 432 588 1.15e-18 87.8
Msa0190530 AT5G46760.1 34.783 161 101 2 185 342 415 574 3.23e-17 83.6
Msa0190530 AT2G46510.1 59.649 57 23 0 185 241 395 451 1.18e-16 81.6
Msa0190530 AT4G16430.1 37.143 140 70 5 126 249 247 384 2.80e-16 80.1
Msa0190530 AT1G01260.1 52.174 69 32 1 176 243 423 491 9.09e-16 79.0
Msa0190530 AT1G01260.2 52.174 69 32 1 176 243 423 491 9.09e-16 79.0
Msa0190530 AT1G01260.3 52.174 69 32 1 176 243 423 491 9.09e-16 79.0
Msa0190530 AT4G17880.1 32.867 143 94 2 185 327 416 556 1.39e-15 78.6
Msa0190530 AT1G12860.2 30.921 152 100 3 186 332 268 419 2.06e-14 74.3
Msa0190530 AT1G12860.1 30.921 152 100 3 186 332 268 419 2.72e-14 74.3
Msa0190530 AT3G26744.6 30.128 156 100 3 186 332 308 463 2.78e-13 71.2
Msa0190530 AT3G26744.1 30.128 156 100 3 186 332 308 463 2.83e-13 71.2
Msa0190530 AT3G26744.4 30.128 156 100 3 186 332 308 463 2.83e-13 71.2
Msa0190530 AT3G26744.2 30.128 156 100 3 186 332 308 463 2.83e-13 71.2
Msa0190530 AT5G57150.3 30.000 170 97 5 181 335 51 213 1.20e-12 67.0
Msa0190530 AT5G57150.5 30.000 170 97 5 181 335 50 212 1.29e-12 67.0
Msa0190530 AT5G57150.2 30.000 170 97 5 181 335 51 213 1.41e-12 67.0
Msa0190530 AT4G09820.1 31.343 134 65 3 186 316 364 473 1.48e-12 68.9
Msa0190530 AT2G16910.1 26.061 165 93 3 186 325 315 475 1.99e-12 68.9
Msa0190530 AT5G57150.4 30.000 170 97 5 181 335 51 213 2.01e-12 67.0
Msa0190530 AT5G41315.2 28.824 170 99 3 168 315 432 601 2.25e-12 68.6
Msa0190530 AT5G41315.1 28.824 170 99 3 168 315 424 593 2.28e-12 68.6
Msa0190530 AT5G41315.3 28.824 170 99 3 168 315 429 598 2.33e-12 68.6
Msa0190530 AT5G57150.1 30.000 170 97 5 181 335 50 212 2.35e-12 66.6
Msa0190530 AT3G61950.6 30.496 141 87 3 185 319 128 263 4.55e-12 66.6
Msa0190530 AT4G00870.1 46.875 64 34 0 186 249 250 313 6.33e-12 67.0
Msa0190530 AT3G61950.3 30.496 141 87 3 185 319 179 314 9.77e-12 65.9
Msa0190530 AT3G61950.2 30.496 141 87 3 185 319 128 263 1.02e-11 65.5
Msa0190530 AT1G63650.3 26.923 156 97 2 177 315 397 552 1.84e-11 65.9
Msa0190530 AT1G63650.1 26.923 156 97 2 177 315 397 552 1.84e-11 65.9
Msa0190530 AT1G63650.2 26.923 156 97 2 177 315 397 552 1.84e-11 65.9
Msa0190530 AT4G29930.6 27.778 180 107 6 186 357 55 219 1.93e-11 63.5
Msa0190530 AT3G61950.1 30.496 141 87 3 185 319 179 314 1.94e-11 65.1
Msa0190530 AT4G29930.2 28.161 174 111 4 186 357 55 216 2.89e-11 63.2
Msa0190530 AT4G29930.1 25.773 194 119 3 186 357 55 245 6.28e-11 62.8

Find 59 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTGCTTCAATTTC+AGG 0.082646 2_1:-6022911 None:intergenic
ATGCTAGCTTCCACAATATT+TGG 0.118609 2_1:+6020613 Msa0190530:CDS
AATAAATATCTTACCATTTC+AGG 0.175967 2_1:-6021394 None:intergenic
AACTTAACTGCTTCTGCTTT+TGG 0.208058 2_1:+6021702 Msa0190530:CDS
AGCAGAAGCAGTTAAGTTAT+TGG 0.221213 2_1:-6021697 None:intergenic
ATGGACAAAGCTTCTGTTCT+TGG 0.230457 2_1:+6022716 Msa0190530:CDS
AATAGCAGTTCCTTGACTTT+TGG 0.241912 2_1:+6023031 Msa0190530:CDS
TTTCACCGGTCTTTCGTTTC+CGG 0.252447 2_1:-6021799 None:intergenic
GTTGTTGAAGTTTGGATTAT+TGG 0.283921 2_1:-6021751 None:intergenic
ATCACTCAAGGTAACTTGTT+TGG 0.298879 2_1:+6022014 Msa0190530:CDS
TTTGATACCTTCTTTAGGTT+TGG 0.325711 2_1:-6022188 None:intergenic
CATTATTTGATACCTTCTTT+AGG 0.327577 2_1:-6022193 None:intergenic
ATGAACTCTGCAGGGGATAA+TGG 0.331301 2_1:+6021623 Msa0190530:intron
TCACTCAAGGTAACTTGTTT+GGG 0.334384 2_1:+6022015 Msa0190530:CDS
CTGTTCTTGGAGAAGCTATA+AGG 0.338206 2_1:+6022729 Msa0190530:CDS
CATAAAATTTAACTTCTTTG+TGG 0.376553 2_1:-6023578 None:intergenic
TATCAGAGGGTTACCTGAAA+TGG 0.381568 2_1:+6021381 Msa0190530:CDS
TTTCAGGATGAGTTCTCATA+TGG 0.392590 2_1:+6021348 Msa0190530:intron
TGCTAGCTTCCACAATATTT+GGG 0.426640 2_1:+6020614 Msa0190530:CDS
AATAATCATGTTTGCATGGC+GGG 0.428743 2_1:+6023611 Msa0190530:three_prime_UTR
TAAAATTACCTGAGCAATGA+TGG 0.451657 2_1:-6023074 None:intergenic
TTGAATTACACAAATCAGTT+GGG 0.457187 2_1:+6021921 Msa0190530:CDS
TCAAACAATGTAGTCTTATG+AGG 0.459967 2_1:-6022946 None:intergenic
TATAAGGTACTTAAAGCAAA+TGG 0.467859 2_1:+6022745 Msa0190530:CDS
GAGCAATGATGGTTATATCA+AGG 0.480152 2_1:-6023063 None:intergenic
TTTGAATTACACAAATCAGT+TGG 0.490344 2_1:+6021920 Msa0190530:CDS
TATTGGTATCAATAGAGCTT+AGG 0.492237 2_1:-6021680 None:intergenic
TTATTTCTTAACTGTTTCAC+CGG 0.499185 2_1:-6021813 None:intergenic
AACAGTTAAGAAATAACAGC+TGG 0.500916 2_1:+6021820 Msa0190530:CDS
TGATATAACCATCATTGCTC+AGG 0.502657 2_1:+6023066 Msa0190530:CDS
GGACACACCATCTCAGACTT+AGG 0.503073 2_1:-6021954 None:intergenic
AGAGAAAGTGAGTGTTCTTG+AGG 0.506732 2_1:+6022769 Msa0190530:CDS
CTTGAACAGCTTTAAAGACA+TGG 0.514024 2_1:-6022046 None:intergenic
TCATATTGTGTATCTGATGT+TGG 0.522543 2_1:-6021861 None:intergenic
AGCTTAGGTGATTATTGAAG+TGG 0.522860 2_1:-6021665 None:intergenic
TGGCAATTTGCAGATGGATG+TGG 0.531836 2_1:+6023457 Msa0190530:intron
TGCATGGAGACTTCGCCTAC+CGG 0.553544 2_1:+6021780 Msa0190530:CDS
TAGCAATTACCCAAATATTG+TGG 0.554985 2_1:-6020623 None:intergenic
TCTTGTTCCAAACCTAAAGA+AGG 0.556354 2_1:+6022181 Msa0190530:CDS
CTACATTGTTTGAAGAGTCA+AGG 0.557167 2_1:+6022956 Msa0190530:CDS
AAGTAATAATCATGTTTGCA+TGG 0.557909 2_1:+6023607 Msa0190530:three_prime_UTR
TGTGTAATTCAAATCAGCAA+AGG 0.572771 2_1:-6021910 None:intergenic
GCAAACATGTTGATCACTCA+AGG 0.574022 2_1:+6022002 Msa0190530:CDS
AGCAATGATGGTTATATCAA+GGG 0.578216 2_1:-6023062 None:intergenic
CTTCAACAACAAAACATGCA+TGG 0.578541 2_1:+6021764 Msa0190530:CDS
CAGACAGAGCGATGAATCGT+TGG 0.578725 2_1:-6022157 None:intergenic
ACCGGTCTTTCGTTTCCGGT+AGG 0.581772 2_1:-6021795 None:intergenic
TGGAGATTTCATCTATCAGA+GGG 0.587975 2_1:+6021368 Msa0190530:CDS
GAAAGTGAGTGTTCTTGAGG+AGG 0.588414 2_1:+6022772 Msa0190530:CDS
ATTGAAGCCTAAGTCTGAGA+TGG 0.590244 2_1:+6021947 Msa0190530:CDS
ATGGAGATTTCATCTATCAG+AGG 0.606668 2_1:+6021367 Msa0190530:CDS
GGTGAAATTCCCAAAAGTCA+AGG 0.621239 2_1:-6023041 None:intergenic
GCCTACCGGAAACGAAAGAC+CGG 0.631389 2_1:+6021794 Msa0190530:CDS
TATTGTGTATCTGATGTTGG+AGG 0.636554 2_1:-6021858 None:intergenic
AACTCTGCAGGGGATAATGG+AGG 0.663168 2_1:+6021626 Msa0190530:intron
TAATAATCATGTTTGCATGG+CGG 0.685380 2_1:+6023610 Msa0190530:three_prime_UTR
ATGATCACATCGTAGCGGAG+AGG 0.690331 2_1:+6022114 Msa0190530:CDS
TGACAGTGAAGGATCTTGTG+AGG 0.718300 2_1:+6023489 Msa0190530:CDS
AGCTCATGATCACATCGTAG+CGG 0.723921 2_1:+6022109 Msa0190530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAACTTAATTAATT+AGG + chr2_1:6020728-6020747 Msa0190530:intron 10.0%
!!! TTATTTTTAGTTAATTATCA+GGG + chr2_1:6022406-6022425 Msa0190530:intron 10.0%
!! AAATAACTTAATTAATTAGG+TGG + chr2_1:6020731-6020750 Msa0190530:intron 15.0%
!!! AAAAGTATATATTTCATCTT+AGG + chr2_1:6022245-6022264 Msa0190530:intron 15.0%
!!! GTAATATTTCAATTTTGATT+AGG + chr2_1:6022309-6022328 Msa0190530:intron 15.0%
!!! GTTATTTTTAGTTAATTATC+AGG + chr2_1:6022405-6022424 Msa0190530:intron 15.0%
!!! CTTTTTTAATAGTTTATCTT+AGG - chr2_1:6022531-6022550 None:intergenic 15.0%
!! TTAACATTAGATATACATAT+AGG + chr2_1:6022665-6022684 Msa0190530:intron 15.0%
!!! TCCTAATTTTATATGAATAT+TGG + chr2_1:6023427-6023446 Msa0190530:intron 15.0%
!! TCCAATATTCATATAAAATT+AGG - chr2_1:6023431-6023450 None:intergenic 15.0%
!!! ACATTGAAATTTTGATCAAA+GGG - chr2_1:6020853-6020872 None:intergenic 20.0%
!!! CTAAACAAATTGTTTTTTTG+CGG - chr2_1:6020903-6020922 None:intergenic 20.0%
!! TAGGCTTCATAATATAAAAT+TGG + chr2_1:6020947-6020966 Msa0190530:intron 20.0%
!! AGAAGAGTTGTATTATTATA+TGG - chr2_1:6021050-6021069 None:intergenic 20.0%
!!! TTCTTCTAATTTCTTTTTTC+AGG + chr2_1:6021332-6021351 Msa0190530:intron 20.0%
!! AATAAATATCTTACCATTTC+AGG - chr2_1:6021397-6021416 None:intergenic 20.0%
!!! TATATACTTTTGACAATATG+AGG - chr2_1:6022236-6022255 None:intergenic 20.0%
!! AATTGTGTATCAAGTATTAT+TGG + chr2_1:6022383-6022402 Msa0190530:intron 20.0%
!! ATTCATATAAAATTAGGACT+TGG - chr2_1:6023425-6023444 None:intergenic 20.0%
!! ATATGAATATTGGAATTGTT+TGG + chr2_1:6023437-6023456 Msa0190530:intron 20.0%
!!! CATAAAATTTAACTTCTTTG+TGG - chr2_1:6023581-6023600 None:intergenic 20.0%
!!! TTTTTAGTCATATTTTTGCA+TGG + chr2_1:6023698-6023717 Msa0190530:three_prime_UTR 20.0%
! AATATTTGGGTAATTGCTAT+TGG + chr2_1:6020627-6020646 Msa0190530:intron 25.0%
!! TTTCATTTTCTCATTCTCTT+TGG - chr2_1:6020704-6020723 None:intergenic 25.0%
!!! GACATTGAAATTTTGATCAA+AGG - chr2_1:6020854-6020873 None:intergenic 25.0%
! TCAAAATTTCAATGTCTAGT+TGG + chr2_1:6020858-6020877 Msa0190530:intron 25.0%
!! CGCAAAAAAACAATTTGTTT+AGG + chr2_1:6020901-6020920 Msa0190530:intron 25.0%
! TTATTTGTCAGCTTGAAAAT+AGG + chr2_1:6020928-6020947 Msa0190530:intron 25.0%
!! TTAGTCCTTGTTTCAAATAT+AGG + chr2_1:6020980-6020999 Msa0190530:intron 25.0%
! TTGTATTATTATATGGTCAC+GGG - chr2_1:6021043-6021062 None:intergenic 25.0%
! GTTGTATTATTATATGGTCA+CGG - chr2_1:6021044-6021063 None:intergenic 25.0%
! TTGAAACAAATAATACACTG+AGG + chr2_1:6021074-6021093 Msa0190530:intron 25.0%
!! TTTTTGAACCATTTAACACA+TGG + chr2_1:6021505-6021524 Msa0190530:intron 25.0%
! TTAAATCTCCATGTGTTAAA+TGG - chr2_1:6021516-6021535 None:intergenic 25.0%
!! GAGATTTAAAACATGGTATT+TGG + chr2_1:6021527-6021546 Msa0190530:intron 25.0%
! TTGAAGTGGTGTAAAAAATT+AGG - chr2_1:6021654-6021673 None:intergenic 25.0%
!! TTATTTCTTAACTGTTTCAC+CGG - chr2_1:6021816-6021835 None:intergenic 25.0%
! TTTGAATTACACAAATCAGT+TGG + chr2_1:6021920-6021939 Msa0190530:CDS 25.0%
! TTGAATTACACAAATCAGTT+GGG + chr2_1:6021921-6021940 Msa0190530:CDS 25.0%
! CATTATTTGATACCTTCTTT+AGG - chr2_1:6022196-6022215 None:intergenic 25.0%
!!! CTAAAGAAATTTTAACCAAG+AGG - chr2_1:6022445-6022464 None:intergenic 25.0%
!! TATAAGGTACTTAAAGCAAA+TGG + chr2_1:6022745-6022764 Msa0190530:CDS 25.0%
!!! GATTGATTGTTATTTGTTGA+CGG - chr2_1:6023310-6023329 None:intergenic 25.0%
! AAGTAATAATCATGTTTGCA+TGG + chr2_1:6023607-6023626 Msa0190530:three_prime_UTR 25.0%
TAGCAATTACCCAAATATTG+TGG - chr2_1:6020626-6020645 None:intergenic 30.0%
TAGGTGGAAAAATGAAGAAA+AGG + chr2_1:6020747-6020766 Msa0190530:intron 30.0%
AGGTGGAAAAATGAAGAAAA+GGG + chr2_1:6020748-6020767 Msa0190530:intron 30.0%
AAATTATCAAAGGACCATTG+TGG - chr2_1:6020825-6020844 None:intergenic 30.0%
AAGGGTTTGCAAATTATCAA+AGG - chr2_1:6020835-6020854 None:intergenic 30.0%
!!! AATTGTTTTTTTGCGGACTT+TGG - chr2_1:6020896-6020915 None:intergenic 30.0%
! AGAAGCCTATATTTGAAACA+AGG - chr2_1:6020988-6021007 None:intergenic 30.0%
TAGTGAACAAAACAAAACTC+AGG + chr2_1:6021099-6021118 Msa0190530:intron 30.0%
! ACACATGGAGATTTAAAACA+TGG + chr2_1:6021520-6021539 Msa0190530:intron 30.0%
! TAATGTTTTATGAACTCTGC+AGG + chr2_1:6021614-6021633 Msa0190530:intron 30.0%
! AATGTTTTATGAACTCTGCA+GGG + chr2_1:6021615-6021634 Msa0190530:intron 30.0%
TATTGGTATCAATAGAGCTT+AGG - chr2_1:6021683-6021702 None:intergenic 30.0%
GTTGTTGAAGTTTGGATTAT+TGG - chr2_1:6021754-6021773 None:intergenic 30.0%
!!! CATGTTTTGTTGTTGAAGTT+TGG - chr2_1:6021762-6021781 None:intergenic 30.0%
AACAGTTAAGAAATAACAGC+TGG + chr2_1:6021820-6021839 Msa0190530:CDS 30.0%
TCATATTGTGTATCTGATGT+TGG - chr2_1:6021864-6021883 None:intergenic 30.0%
TGTGTAATTCAAATCAGCAA+AGG - chr2_1:6021913-6021932 None:intergenic 30.0%
!!! GTACTAGTGTTATCGATTTT+CGG - chr2_1:6021978-6021997 None:intergenic 30.0%
! TGAGCTTGAGAGATTTTATT+AGG - chr2_1:6022095-6022114 None:intergenic 30.0%
! TTTGATACCTTCTTTAGGTT+TGG - chr2_1:6022191-6022210 None:intergenic 30.0%
! ATGTTTTATAGTTCCTCGTA+AGG - chr2_1:6022272-6022291 None:intergenic 30.0%
AACATCGTGATATCTTTGTT+AGG + chr2_1:6022287-6022306 Msa0190530:intron 30.0%
!!! CATGTTTTTTATGACAAACC+AGG + chr2_1:6022344-6022363 Msa0190530:intron 30.0%
! TTTTACATACTCATGATTCC+TGG - chr2_1:6022365-6022384 None:intergenic 30.0%
ACAAAAAAGGAAGAAAACTG+TGG + chr2_1:6022796-6022815 Msa0190530:CDS 30.0%
CAAAATCTTGCTTCAATTTC+AGG - chr2_1:6022914-6022933 None:intergenic 30.0%
!! TCAAACAATGTAGTCTTATG+AGG - chr2_1:6022949-6022968 None:intergenic 30.0%
AGCAATGATGGTTATATCAA+GGG - chr2_1:6023065-6023084 None:intergenic 30.0%
TAAAATTACCTGAGCAATGA+TGG - chr2_1:6023077-6023096 None:intergenic 30.0%
TAATAATCATGTTTGCATGG+CGG + chr2_1:6023610-6023629 Msa0190530:three_prime_UTR 30.0%
! ATGCTAGCTTCCACAATATT+TGG + chr2_1:6020613-6020632 Msa0190530:CDS 35.0%
! TGCTAGCTTCCACAATATTT+GGG + chr2_1:6020614-6020633 Msa0190530:CDS 35.0%
TTATTATATGGTCACGGGTT+TGG - chr2_1:6021038-6021057 None:intergenic 35.0%
TTTCAGGATGAGTTCTCATA+TGG + chr2_1:6021348-6021367 Msa0190530:intron 35.0%
ATGGAGATTTCATCTATCAG+AGG + chr2_1:6021367-6021386 Msa0190530:CDS 35.0%
TGGAGATTTCATCTATCAGA+GGG + chr2_1:6021368-6021387 Msa0190530:CDS 35.0%
CCACAAAAATTCAGAAGCTA+AGG - chr2_1:6021572-6021591 None:intergenic 35.0%
! CCTTAGCTTCTGAATTTTTG+TGG + chr2_1:6021569-6021588 Msa0190530:intron 35.0%
! TCTGAATTTTTGTGGTAGCT+AGG + chr2_1:6021577-6021596 Msa0190530:intron 35.0%
TGGTAGCTAGGACTAATTAA+GGG + chr2_1:6021589-6021608 Msa0190530:intron 35.0%
! ATGTTTTATGAACTCTGCAG+GGG + chr2_1:6021616-6021635 Msa0190530:intron 35.0%
AGCTTAGGTGATTATTGAAG+TGG - chr2_1:6021668-6021687 None:intergenic 35.0%
AGCAGAAGCAGTTAAGTTAT+TGG - chr2_1:6021700-6021719 None:intergenic 35.0%
! AACTTAACTGCTTCTGCTTT+TGG + chr2_1:6021702-6021721 Msa0190530:CDS 35.0%
CTTCAACAACAAAACATGCA+TGG + chr2_1:6021764-6021783 Msa0190530:CDS 35.0%
TATTGTGTATCTGATGTTGG+AGG - chr2_1:6021861-6021880 None:intergenic 35.0%
!! ATCACTCAAGGTAACTTGTT+TGG + chr2_1:6022014-6022033 Msa0190530:CDS 35.0%
!! TCACTCAAGGTAACTTGTTT+GGG + chr2_1:6022015-6022034 Msa0190530:CDS 35.0%
!! CTTGAACAGCTTTAAAGACA+TGG - chr2_1:6022049-6022068 None:intergenic 35.0%
TCTTGTTCCAAACCTAAAGA+AGG + chr2_1:6022181-6022200 Msa0190530:CDS 35.0%
! TTCAGTTTTCTGCATACAGA+TGG + chr2_1:6022697-6022716 Msa0190530:intron 35.0%
TTCTTGAGGAGGAACAAAAA+AGG + chr2_1:6022783-6022802 Msa0190530:CDS 35.0%
CTACATTGTTTGAAGAGTCA+AGG + chr2_1:6022956-6022975 Msa0190530:CDS 35.0%
! AATAGCAGTTCCTTGACTTT+TGG + chr2_1:6023031-6023050 Msa0190530:CDS 35.0%
! ATAGCAGTTCCTTGACTTTT+GGG + chr2_1:6023032-6023051 Msa0190530:CDS 35.0%
GAGCAATGATGGTTATATCA+AGG - chr2_1:6023066-6023085 None:intergenic 35.0%
TGATATAACCATCATTGCTC+AGG + chr2_1:6023066-6023085 Msa0190530:CDS 35.0%
ATTGTTTGGCAATTTGCAGA+TGG + chr2_1:6023451-6023470 Msa0190530:intron 35.0%
AATAATCATGTTTGCATGGC+GGG + chr2_1:6023611-6023630 Msa0190530:three_prime_UTR 35.0%
!!! CCTTGAGAGCAAACATTTTT+TGG - chr2_1:6023660-6023679 None:intergenic 35.0%
CCAAAAAATGTTTGCTCTCA+AGG + chr2_1:6023657-6023676 Msa0190530:three_prime_UTR 35.0%
! TCAAGGTTCATTTTGCAGAA+GGG + chr2_1:6023674-6023693 Msa0190530:three_prime_UTR 35.0%
!!! TGTTTTTTTGCGGACTTTGG+TGG - chr2_1:6020893-6020912 None:intergenic 40.0%
TATCAGAGGGTTACCTGAAA+TGG + chr2_1:6021381-6021400 Msa0190530:CDS 40.0%
GTGGTAGCTAGGACTAATTA+AGG + chr2_1:6021588-6021607 Msa0190530:intron 40.0%
ATTGAAGCCTAAGTCTGAGA+TGG + chr2_1:6021947-6021966 Msa0190530:CDS 40.0%
GCAAACATGTTGATCACTCA+AGG + chr2_1:6022002-6022021 Msa0190530:CDS 40.0%
TTTCATCTTAGGTCCTTACG+AGG + chr2_1:6022256-6022275 Msa0190530:intron 40.0%
! CGAGTTAGTTGGTATATCGA+GGG - chr2_1:6022471-6022490 None:intergenic 40.0%
CCTCGATATACCAACTAACT+CGG + chr2_1:6022469-6022488 Msa0190530:intron 40.0%
ATACCAACTAACTCGGATAG+AGG + chr2_1:6022476-6022495 Msa0190530:intron 40.0%
TTTCCTCTATCCGAGTTAGT+TGG - chr2_1:6022482-6022501 None:intergenic 40.0%
CAAATGTCATCTTTCCAAGC+AGG - chr2_1:6022614-6022633 None:intergenic 40.0%
ATGGACAAAGCTTCTGTTCT+TGG + chr2_1:6022716-6022735 Msa0190530:CDS 40.0%
CTGTTCTTGGAGAAGCTATA+AGG + chr2_1:6022729-6022748 Msa0190530:CDS 40.0%
AGAGAAAGTGAGTGTTCTTG+AGG + chr2_1:6022769-6022788 Msa0190530:CDS 40.0%
GGTGAAATTCCCAAAAGTCA+AGG - chr2_1:6023044-6023063 None:intergenic 40.0%
! GGAATTTTGCATGACAGTGA+AGG + chr2_1:6023478-6023497 Msa0190530:CDS 40.0%
! CTCAAGGTTCATTTTGCAGA+AGG + chr2_1:6023673-6023692 Msa0190530:three_prime_UTR 40.0%
AACGTTAGAAGCTTGAGACG+TGG + chr2_1:6020791-6020810 Msa0190530:intron 45.0%
CACGGGTTTGGATGTGATAT+TGG - chr2_1:6021026-6021045 None:intergenic 45.0%
ATGAACTCTGCAGGGGATAA+TGG + chr2_1:6021623-6021642 Msa0190530:intron 45.0%
TTTCACCGGTCTTTCGTTTC+CGG - chr2_1:6021802-6021821 None:intergenic 45.0%
AGCTCATGATCACATCGTAG+CGG + chr2_1:6022109-6022128 Msa0190530:CDS 45.0%
GGTTTGAACTCTAGACCTCT+TGG + chr2_1:6022427-6022446 Msa0190530:intron 45.0%
! CCGAGTTAGTTGGTATATCG+AGG - chr2_1:6022472-6022491 None:intergenic 45.0%
!! GTAGCTCAGTTGGTAAGTTG+GGG - chr2_1:6022592-6022611 None:intergenic 45.0%
!! GGTAGCTCAGTTGGTAAGTT+GGG - chr2_1:6022593-6022612 None:intergenic 45.0%
!! AGGTAGCTCAGTTGGTAAGT+TGG - chr2_1:6022594-6022613 None:intergenic 45.0%
GAAAGTGAGTGTTCTTGAGG+AGG + chr2_1:6022772-6022791 Msa0190530:CDS 45.0%
TGGCAATTTGCAGATGGATG+TGG + chr2_1:6023457-6023476 Msa0190530:intron 45.0%
TGACAGTGAAGGATCTTGTG+AGG + chr2_1:6023489-6023508 Msa0190530:CDS 45.0%
AGAAGCTTGAGACGTGGCAA+AGG + chr2_1:6020797-6020816 Msa0190530:intron 50.0%
GAAGCTTGAGACGTGGCAAA+GGG + chr2_1:6020798-6020817 Msa0190530:intron 50.0%
! AACTCTGCAGGGGATAATGG+AGG + chr2_1:6021626-6021645 Msa0190530:intron 50.0%
GGACACACCATCTCAGACTT+AGG - chr2_1:6021957-6021976 None:intergenic 50.0%
! ATGATCACATCGTAGCGGAG+AGG + chr2_1:6022114-6022133 Msa0190530:CDS 50.0%
CAGACAGAGCGATGAATCGT+TGG - chr2_1:6022160-6022179 None:intergenic 50.0%
! GTAAGTTGGGGTCAGCTACA+TGG - chr2_1:6022580-6022599 None:intergenic 50.0%
TACCAACTGAGCTACCTGCT+TGG + chr2_1:6022597-6022616 Msa0190530:intron 50.0%
TTCCAAGCAGGTAGCTCAGT+TGG - chr2_1:6022602-6022621 None:intergenic 50.0%
ACGTGGCAAAGGGACCACAA+TGG + chr2_1:6020808-6020827 Msa0190530:intron 55.0%
TGCATGGAGACTTCGCCTAC+CGG + chr2_1:6021780-6021799 Msa0190530:CDS 55.0%
GCCTACCGGAAACGAAAGAC+CGG + chr2_1:6021794-6021813 Msa0190530:CDS 55.0%
ACCGGTCTTTCGTTTCCGGT+AGG - chr2_1:6021798-6021817 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 6020613 6023751 6020613 ID=Msa0190530;Name=Msa0190530
chr2_1 mRNA 6020613 6023751 6020613 ID=Msa0190530-mRNA-1;Parent=Msa0190530;Name=Msa0190530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.6|0.8|1|1|5|207|361
chr2_1 exon 6020613 6020635 6020613 ID=Msa0190530-mRNA-1:exon:2709;Parent=Msa0190530-mRNA-1
chr2_1 exon 6021354 6021402 6021354 ID=Msa0190530-mRNA-1:exon:2710;Parent=Msa0190530-mRNA-1
chr2_1 exon 6021636 6022202 6021636 ID=Msa0190530-mRNA-1:exon:2711;Parent=Msa0190530-mRNA-1
chr2_1 exon 6022716 6023087 6022716 ID=Msa0190530-mRNA-1:exon:2712;Parent=Msa0190530-mRNA-1
chr2_1 exon 6023470 6023751 6023470 ID=Msa0190530-mRNA-1:exon:2713;Parent=Msa0190530-mRNA-1
chr2_1 CDS 6020613 6020635 6020613 ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1 CDS 6021354 6021402 6021354 ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1 CDS 6021636 6022202 6021636 ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1 CDS 6022716 6023087 6022716 ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1 CDS 6023470 6023544 6023470 ID=Msa0190530-mRNA-1:cds;Parent=Msa0190530-mRNA-1
chr2_1 three_prime_UTR 6023545 6023751 6023545 ID=Msa0190530-mRNA-1:three_prime_utr;Parent=Msa0190530-mRNA-1
Gene Sequence

>Msa0190530

ATGCTAGCTTCCACAATATTTGGGATGAGTTCTCATATGGAGATTTCATCTATCAGAGGGTTACCTGAAATGGGGATAATGGAGGATCCTAATTTTTTACACCACTTCAATAATCACCTAAGCTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATATTTTGTCCAATAATCCAAACTTCAACAACAAAACATGCATGGAGACTTCGCCTACCGGAAACGAAAGACCGGTGAAACAGTTAAGAAATAACAGCTGGAATTACAACAATAGTCCTCCAACATCAGATACACAATATGATAATTGTTGCTCTAATAATCTTCTTTCCTTTGCTGATTTGAATTACACAAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCGAAAATCGATAACACTAGTACTCTTGCAAACATGTTGATCACTCAAGGTAACTTGTTTGGGAATCAAAACCATGTCTTTAAAGCTGTTCAAGAAGCTAAAGATATTGAGAATCGTCCTAATAAAATCTCTCAAGCTCATGATCACATCGTAGCGGAGAGGAAGCGTCGCGAGAAGCTTAGCCAACGATTCATCGCTCTGTCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTAAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAAAAAAGGAAGAAAACTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTATTAATGATGCTGAAAACTCTTGTTCAGACACTGATAGTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGACTACATTGTTTGAAGAGTCAAGGAGTTATTGAGAAAATTATGAGTGAAATTGAGAAACTTCATCTGAAAGTCATCAATAGCAGTTCCTTGACTTTTGGGAATTTCACCCTTGATATAACCATCATTGCTCAGATGGATGTGGAATTTTGCATGACAGTGAAGGATCTTGTGAGGAAGCTACGTTCAGCATATTCATCTTTCATGTGA

Protein sequence

>Msa0190530

MLASTIFGMSSHMEISSIRGLPEMGIMEDPNFLHHFNNHLSSIDTNNLTASAFGDALQKHILSNNPNFNNKTCMETSPTGNERPVKQLRNNSWNYNNSPPTSDTQYDNCCSNNLLSFADLNYTNQLGLLKPKSEMVCPKIDNTSTLANMLITQGNLFGNQNHVFKAVQEAKDIENRPNKISQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSQLSINDAENSCSDTDSTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKIMSEIEKLHLKVINSSSLTFGNFTLDITIIAQMDVEFCMTVKDLVRKLRSAYSSFM*