AlfalfaGEDB | Msa1445500

M. sativa cultivar zhongmu-4 / Msa1445500

KEGG: K14961
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034708 GO:0034968 GO:0035064 GO:0035097 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044666 GO:0048188 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051568 GO:0051716 GO:0061458 GO:0070013 GO:0071339 GO:0071704 GO:0071840 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901564 GO:1902494 GO:1990234
PFAM: PF00400.35

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445500	sp\|Q5E915\|RBBP_ARATH	65.750	400	132	3	1	400	136	530	2.18e-174	501

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445500	G7L7T0	98.554	415	6	0	1	415	136	550	0.0	831

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007480	Msa1445500	0.810392	1.179347e-50	-8.615850e-47
Msa0124990	Msa1445500	0.810011	1.424890e-50	-8.615850e-47
Msa0169690	Msa1445500	0.804181	2.443627e-49	-8.615850e-47
Msa0294160	Msa1445500	0.803158	3.984223e-49	-8.615850e-47
Msa0349710	Msa1445500	0.822857	1.892785e-53	-8.615850e-47
Msa0434920	Msa1445500	0.804141	2.491278e-49	-8.615850e-47
Msa0444070	Msa1445500	0.804491	2.106167e-49	-8.615850e-47
Msa0475790	Msa1445500	0.800366	1.490877e-48	-8.615850e-47
Msa0577390	Msa1445500	0.822469	2.329954e-53	-8.615850e-47
Msa0751570	Msa1445500	0.818753	1.662852e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1445500	MtrunA17_Chr8g0355681	98.554	415	6	0	1	415	136	550	831
Msa1445500	MtrunA17_Chr8g0354361	92.289	415	31	1	1	415	136	549	743
Msa1445500	MtrunA17_Chr8g0355701	87.290	417	41	3	1	415	110	516	698

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445500	AT3G21060.1	65.750	400	132	3	1	400	136	530	2.22e-175	501

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Find 134 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCTATCTTCCTGTTC+AGG	0.357336	tig0031137:-14525	None:intergenic
AAACCCTGTCTCACGCAACA+AGG	0.574516	tig0031137:+13580	Msa1445500:CDS
AAAGAAACAGACACAACAAT+TGG	0.439804	tig0031137:-14148	None:intergenic
AAATCAATAAGGGCTTCCTT+AGG	0.523475	tig0031137:-14106	None:intergenic
AAATCAATCATATTTATATA+TGG	0.293497	tig0031137:-15181	None:intergenic
AAATGGTGTTGAGAAGTTGA+AGG	0.591187	tig0031137:+13901	Msa1445500:CDS
AACATTGTATTCAGCAGGAA+TGG	0.517859	tig0031137:+13764	Msa1445500:CDS
AACCCTGTCTCACGCAACAA+GGG	0.615851	tig0031137:+13581	Msa1445500:CDS
AACCCTTGTTGCGTGAGACA+GGG	0.563354	tig0031137:-13583	None:intergenic
AACTCCAACACCTTCTCTGA+TGG	0.531649	tig0031137:-14922	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGTAATTGACAGTAAAGA+TGG	+	tig0031137:13695-13714	Msa1445500:CDS	30.0%
AGAGCACAAGATTTACATAT+GGG	+	tig0031137:14048-14067	Msa1445500:CDS	30.0%
ATCTTGTGAAAATCCTTGAA+GGG	+	tig0031137:14083-14102	Msa1445500:CDS	30.0%
AAAGAAACAGACACAACAAT+TGG	-	tig0031137:14151-14170	None:intergenic	30.0%
ACTTGGTTAAGACCATAAAA+TGG	-	tig0031137:14359-14378	None:intergenic	30.0%
TTCATATTCTTGCAGGTAAA+AGG	+	tig0031137:14378-14397	Msa1445500:intron	30.0%
TTAGATAGTTCTTCGAAGAT+TGG	+	tig0031137:14546-14565	Msa1445500:CDS	30.0%
TAGATAGTTCTTCGAAGATT+GGG	+	tig0031137:14547-14566	Msa1445500:CDS	30.0%
GAAGAAACCTAAACTCATAA+AGG	-	tig0031137:14753-14772	None:intergenic	30.0%
ATTATTTACAGATGATGCTG+TGG	+	tig0031137:14873-14892	Msa1445500:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0031137	gene	13159	15329	13159	ID=Msa1445500;Name=Msa1445500
tig0031137	mRNA	13159	15329	13159	ID=Msa1445500-mRNA-1;Parent=Msa1445500;Name=Msa1445500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=350\|1\|1\|1\|1\|1\|3\|261\|415
tig0031137	exon	13159	14309	13159	ID=Msa1445500-mRNA-1:exon:15009;Parent=Msa1445500-mRNA-1
tig0031137	exon	14393	14654	14393	ID=Msa1445500-mRNA-1:exon:15010;Parent=Msa1445500-mRNA-1
tig0031137	exon	14884	15329	14884	ID=Msa1445500-mRNA-1:exon:15011;Parent=Msa1445500-mRNA-1
tig0031137	five_prime_UTR	13159	13508	13159	ID=Msa1445500-mRNA-1:five_prime_utr;Parent=Msa1445500-mRNA-1
tig0031137	CDS	13509	14309	13509	ID=Msa1445500-mRNA-1:cds;Parent=Msa1445500-mRNA-1
tig0031137	CDS	14393	14654	14393	ID=Msa1445500-mRNA-1:cds;Parent=Msa1445500-mRNA-1
tig0031137	CDS	14884	15068	14884	ID=Msa1445500-mRNA-1:cds;Parent=Msa1445500-mRNA-1
tig0031137	three_prime_UTR	15069	15329	15069	ID=Msa1445500-mRNA-1:three_prime_utr;Parent=Msa1445500-mRNA-1

Gene Sequence

>Msa1445500

ATGATTGTTGACTTGAACACTGAAAATACAACTTATCTTCAAGTTTCTGTCTCTGACAAACCAAGTGGACCAAACCCTGTCTCACGCAACAAGGGTTCTGATGGAAGTACCTCCTTCACACCTACTGCTGCATGTTTTAGTAAGTATGGAAACCTGGTTTATGTGGGAAACTCGAAAGGTGAAATTCTTGTAATTGACAGTAAAGATGGTGAGGTGCGTGGCATGGTTTCTATCTCTGGTGGTTCAGTAGTGAAGAACATTGTATTCAGCAGGAATGGACAGTATCTTCTAACAAACTCAAATGATCGAGTAATCAGAATCTATGAAAATCTTCTTCCACCAAAAGATGAAGTTAGAGCATTAGCTGAATTGAACGAGAACCTCGGTGATCTAAATGGTGTTGAGAAGTTGAAGGCTGTAGGATCAAAATGTTTAACTCTGTTCCGTGAGTTTCAAGATGCAATCACGAAAGTGCACTGGAAGGCACCCTGTTTCAGTGGTGATGGAGAGTGGGTTGTTGGTGGTTCTGCTAGCAAAGGAGAGCACAAGATTTACATATGGGATAGAGCTGGACATCTTGTGAAAATCCTTGAAGGGCCTAAGGAAGCCCTTATTGATTTAGCGTGGCATCCTGTACGTCCAATTGTTGTGTCTGTTTCTTTGTGTGGCATAGTTTATATCTGGGCCAAAGAGTACATAGAGAACTGGAGTGCTTTTGCTCCTGATTTCAAAGAGATTGAGGAAAATGAGGAGTATGTGGAGCGAGAAGATGAATTTGATTTGAATCCTGACACTGATAATGTAAAAGGATCTGATGTCAATGAAGATGAGGACGTTGACATTGTGACAGTCGAGAAGGATCCTAATTTCAGCGACTCTGATATGTCCGAGGAAGAGCTACGTTATCTACCAGTGTCTCCCATTCCCGATGTTCCTGAACAGGAAGATAGGCTTTTAGATAGTTCTTCGAAGATTGGGGACAGCAATAACTCTGGATCACCATTTTCGGAAGAAGTGGTAGCAAATGGACACATGATGAGCCATGCCTCAAGTCCACTTGAAGATGATGCTGTGGGAACAAGAATTAAAAGAAGGCGGAAACCATCAGAGAAGGTGTTGGAGTTGCAGGCTGAAAGAGTCAATAAAACCTCAAACTCTAGCAAACCATCAAGAACCAAAACTAAATCTTTTGTTGATGAGAGCAATGGTAATGATTTTTATTATGATGATGACCTGTCTGATGAATGA

Protein sequence

>Msa1445500

MIVDLNTENTTYLQVSVSDKPSGPNPVSRNKGSDGSTSFTPTAACFSKYGNLVYVGNSKGEILVIDSKDGEVRGMVSISGGSVVKNIVFSRNGQYLLTNSNDRVIRIYENLLPPKDEVRALAELNENLGDLNGVEKLKAVGSKCLTLFREFQDAITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVRPIVVSVSLCGIVYIWAKEYIENWSAFAPDFKEIEENEEYVEREDEFDLNPDTDNVKGSDVNEDEDVDIVTVEKDPNFSDSDMSEEELRYLPVSPIPDVPEQEDRLLDSSSKIGDSNNSGSPFSEEVVANGHMMSHASSPLEDDAVGTRIKRRRKPSEKVLELQAERVNKTSNSSKPSRTKTKSFVDESNGNDFYYDDDLSDE*