AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124990 MtrunA17_Chr1g0186521 96.616 591 19 1 10 599 2 592 0.0 1199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124990 AT5G43500.1 60.504 595 222 2 7 598 11 595 0.0 749
Msa0124990 AT5G43500.2 60.811 592 219 2 10 598 2 583 0.0 747
Msa0124990 AT5G43500.4 59.600 500 189 2 7 503 11 500 0.0 613
Msa0124990 AT5G43500.3 59.960 497 186 2 10 503 2 488 0.0 612

Find 152 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATCTGTACCTTCTTT+TGG 0.143352 1_3:+52975038 None:intergenic
TTGAAATACCTATAAATTAA+TGG 0.158674 1_3:-52969415 Msa0124990:three_prime_UTR
ACTTTAATCCATTAATTTAT+AGG 0.181310 1_3:+52969407 None:intergenic
GTGAAGGAAGCGCAGATTTA+AGG 0.219002 1_3:+52977389 None:intergenic
CCACGATTATCAAATGTTTC+TGG 0.235555 1_3:+52974247 None:intergenic
TGATCTTGAACATTCTTCTT+AGG 0.237962 1_3:+52977104 None:intergenic
GGTACAGATTTGAAGGAAAT+TGG 0.238968 1_3:-52975029 Msa0124990:CDS
ACTTTCTATCACAATGTTAA+TGG 0.242936 1_3:-52970700 Msa0124990:CDS
ATTCTTGGAGTACTTGATTT+AGG 0.248981 1_3:-52969564 Msa0124990:three_prime_UTR
ACTGTTGAAGATACCGTTTC+TGG 0.255750 1_3:-52976331 Msa0124990:CDS
ATAGATTACTGCTAATTTCA+TGG 0.260106 1_3:-52969682 Msa0124990:three_prime_UTR
CTTCTAAAGTTTCGACGTTC+AGG 0.269380 1_3:-52978442 Msa0124990:CDS
ATGCAATGAGGGATATTATA+AGG 0.277489 1_3:+52977149 None:intergenic
TTGAGGATCTACGTTCTATT+TGG 0.279989 1_3:-52974342 Msa0124990:CDS
GTATTACATGAATTGAATTC+TGG 0.280774 1_3:-52969462 Msa0124990:three_prime_UTR
ACTGTATCAATTGCTTCATT+TGG 0.293011 1_3:+52970179 None:intergenic
AAGTAAATTCAATTGATTCT+TGG 0.311421 1_3:-52969579 Msa0124990:three_prime_UTR
TCGTCTTCAGTTTCAGCATT+AGG 0.312854 1_3:-52975554 Msa0124990:intron
GGTTCTGCAAATATTAGAAT+TGG 0.330623 1_3:-52977191 Msa0124990:CDS
GTCGGACATGTCAGACCTTC+GGG 0.346155 1_3:+52970723 None:intergenic
AGATGAGACTAGTGAGTCTT+TGG 0.346917 1_3:-52975063 Msa0124990:CDS
AACATATCTGTTCGAATTTG+TGG 0.349833 1_3:+52971816 None:intergenic
GTAGGGATGCATGAATAAAT+TGG 0.361878 1_3:-52969542 Msa0124990:three_prime_UTR
TGAGGATCTACGTTCTATTT+GGG 0.364966 1_3:-52974341 Msa0124990:CDS
ATTCTTCTTAGGAACTTGTT+TGG 0.368771 1_3:+52977115 None:intergenic
CATGCCACAAACAGAAATAA+AGG 0.379273 1_3:-52974112 Msa0124990:intron
CTTACGAGGGAAAGAGTTAC+TGG 0.381614 1_3:+52976296 None:intergenic
GTAGGGATGCATGGATAAAT+CGG 0.385530 1_3:-52969832 Msa0124990:CDS
TAAGAAGAATGTTCAAGATC+AGG 0.389217 1_3:-52977102 Msa0124990:intron
GTATCAATTGCTTCATTTGG+AGG 0.400578 1_3:+52970182 None:intergenic
GCTATTAGGTTATACAATCA+AGG 0.404540 1_3:-52970033 Msa0124990:intron
AGTTACAACTGCACAGCATA+TGG 0.406231 1_3:-52976473 Msa0124990:CDS
ATTGGACGACATAAACAATA+TGG 0.409714 1_3:+52974939 None:intergenic
TGCAAATATTAGAATTGGAT+TGG 0.415664 1_3:-52977186 Msa0124990:CDS
TGCAATGAGGGATATTATAA+GGG 0.416246 1_3:+52977150 None:intergenic
GGAAATTCTATCTGTAGTAC+TGG 0.418480 1_3:-52974091 Msa0124990:CDS
TGTGTTACATGAATTCTTGA+AGG 0.424584 1_3:-52969730 Msa0124990:exon
TGGGTTGATTACAACGAGAT+TGG 0.431225 1_3:+52977345 None:intergenic
TTCGAATTTGTGGCCAGGTC+TGG 0.433048 1_3:+52971826 None:intergenic
CATGGATAAATCGGGAAGAC+TGG 0.438222 1_3:-52969823 Msa0124990:CDS
GCACAGATGGGGCGCGCTGA+TGG 0.454386 1_3:-52975641 Msa0124990:intron
ACAGCTTGTGTAGTGAATAT+TGG 0.458030 1_3:-52973883 Msa0124990:CDS
AAAAGAAGGTACAGATTTGA+AGG 0.461794 1_3:-52975036 Msa0124990:CDS
TGTCGGACATGTCAGACCTT+CGG 0.465786 1_3:+52970722 None:intergenic
ATCTACGTTCTATTTGGGAC+TGG 0.465973 1_3:-52974336 Msa0124990:CDS
TATTGCATAGGTTCCTCCTA+TGG 0.468761 1_3:-52970949 Msa0124990:intron
GGAAAGATTCACCCTTCACT+TGG 0.475731 1_3:-52975604 Msa0124990:CDS
CATTTGTGTCATGGAAGGGC+GGG 0.476693 1_3:-52970000 Msa0124990:CDS
ATCCTCCTCCACCACGGACT+TGG 0.480153 1_3:-52970890 Msa0124990:intron
TTCAAATGTCCTCTGCGGAT+TGG 0.480699 1_3:+52974921 None:intergenic
TGGCACCACTTTGTCCTCAT+AGG 0.480851 1_3:+52971087 None:intergenic
CCCTTCCATGACACAAATGT+TGG 0.481668 1_3:+52970004 None:intergenic
AGTCTTGTCTTGTGAGATCC+TGG 0.484114 1_3:+52971067 None:intergenic
CAGTAACTCTTTCCCTCGTA+AGG 0.484178 1_3:-52976295 Msa0124990:intron
AAGTTCAGAAAGTTCATTTG+TGG 0.487448 1_3:-52974993 Msa0124990:CDS
TAGTTCCTGCAGTTGAAGAA+AGG 0.489413 1_3:-52970333 Msa0124990:intron
GGCGGCGTGGCTCTGACAAA+TGG 0.490488 1_3:-52970358 Msa0124990:CDS
GTACTGGAAGAACTCTGCTT+TGG 0.490704 1_3:-52974075 Msa0124990:CDS
TTTAACATTAACAGATCGAT+TGG 0.492015 1_3:+52971786 None:intergenic
ATCTGTTCGAATTTGTGGCC+AGG 0.492395 1_3:+52971821 None:intergenic
TTCTAAAGTTTCGACGTTCA+GGG 0.495923 1_3:-52978441 Msa0124990:intron
TGGCTCAGCAGTGGTGCACC+AGG 0.497650 1_3:-52974055 Msa0124990:intron
GAAACTTTAAGATGTATGAC+AGG 0.507930 1_3:+52969707 None:intergenic
ATTGCATAGGTTCCTCCTAT+GGG 0.508669 1_3:-52970948 Msa0124990:intron
ACAGCATATGGAAAGGGAAA+AGG 0.511763 1_3:-52976461 Msa0124990:CDS
ATTCTTGGAGTACTTGATGT+AGG 0.512582 1_3:-52969854 Msa0124990:CDS
CTATTAGGTTATACAATCAA+GGG 0.512637 1_3:-52970032 Msa0124990:intron
ACAAACCTTTCTTCAACTGC+AGG 0.513692 1_3:+52970328 None:intergenic
ACCAACTGCATTCTCTCAGC+TGG 0.513823 1_3:-52970595 Msa0124990:intron
AACCAAGTCCGTGGTGGAGG+AGG 0.516033 1_3:+52970888 None:intergenic
TATGAGGACAAAGTGGTGCC+AGG 0.517306 1_3:-52971085 Msa0124990:CDS
TGTAGTGAATATTGGTGCTC+AGG 0.518128 1_3:-52973875 Msa0124990:CDS
TGCAGTAGTTCATTCCTATG+AGG 0.519165 1_3:-52971101 Msa0124990:CDS
CACAAAGACATCACCAGACC+TGG 0.520166 1_3:-52971839 Msa0124990:CDS
CATAAACAATATGGTTCAGT+GGG 0.521195 1_3:+52974948 None:intergenic
TTGGAGTACTTGATTTAGGT+AGG 0.524708 1_3:-52969560 Msa0124990:three_prime_UTR
TGGAGTACTTGATTTAGGTA+GGG 0.527586 1_3:-52969559 Msa0124990:three_prime_UTR
ATTTGTGTCATGGAAGGGCG+GGG 0.530610 1_3:-52969999 Msa0124990:CDS
TTGATGTAGGTAGGGATGCA+TGG 0.532058 1_3:-52969841 Msa0124990:CDS
TTGGAGTACTTGATGTAGGT+AGG 0.535455 1_3:-52969850 Msa0124990:CDS
TGGAGTACTTGATGTAGGTA+GGG 0.535632 1_3:-52969849 Msa0124990:CDS
TTCTATCACAATGTTAATGG+AGG 0.539658 1_3:-52970697 Msa0124990:CDS
TCCAACATTTGTGTCATGGA+AGG 0.542569 1_3:-52970005 Msa0124990:CDS
AACTGCACAGCATATGGAAA+GGG 0.542759 1_3:-52976467 Msa0124990:CDS
CACTTGGACTAATGTTTACG+AGG 0.545644 1_3:-52975588 Msa0124990:CDS
CAAATCCAACATTTGTGTCA+TGG 0.547362 1_3:-52970009 Msa0124990:CDS
TAGGGATGCATGGATAAATC+GGG 0.548359 1_3:-52969831 Msa0124990:CDS
ACTAACCAAGTCCGTGGTGG+AGG 0.552841 1_3:+52970885 None:intergenic
GGTGGAGGAGGATACACATC+AGG 0.561073 1_3:+52970900 None:intergenic
GTGACATGTACCTGCTGCAT+GGG 0.562567 1_3:+52974882 None:intergenic
CCAGAAACATTTGATAATCG+TGG 0.568663 1_3:-52974247 Msa0124990:intron
GACATCAATTATATGCATAG+AGG 0.569721 1_3:-52973851 Msa0124990:intron
AGCTGGATAACTTTCCCACA+TGG 0.579450 1_3:+52970669 None:intergenic
TACATGTTTCTTTCATTGCG+AGG 0.582238 1_3:+52974289 None:intergenic
GAGTCTTTGGACCCAAAAGA+AGG 0.582561 1_3:-52975050 Msa0124990:CDS
GAAGGTTCTTCATCCAGAAA+CGG 0.582688 1_3:+52976318 None:intergenic
TATAATGAGCAATGCAATGA+GGG 0.584288 1_3:+52977138 None:intergenic
ACATAAACAATATGGTTCAG+TGG 0.591646 1_3:+52974947 None:intergenic
TCTATCACAATGTTAATGGA+GGG 0.595323 1_3:-52970696 Msa0124990:CDS
AGGATATGCTAGAAGATACA+TGG 0.596286 1_3:-52970759 Msa0124990:CDS
CCAACATTTGTGTCATGGAA+GGG 0.599203 1_3:-52970004 Msa0124990:CDS
CAGAAAGTTCATTTGTGGCG+AGG 0.601311 1_3:-52974988 Msa0124990:CDS
GATGTCTTTGTGTATAGAGA+AGG 0.601867 1_3:+52971850 None:intergenic
ACCAGCTGAGAGAATGCAGT+TGG 0.602297 1_3:+52970594 None:intergenic
CGTTCTGACATAACTTGTGA+AGG 0.603077 1_3:+52977373 None:intergenic
TACATGAATTGAATTCTGGA+AGG 0.604909 1_3:-52969458 Msa0124990:three_prime_UTR
CGAGGGAAAGAGTTACTGGA+AGG 0.606527 1_3:+52976300 None:intergenic
CGGGAAGACTGGATTCAAAG+TGG 0.607187 1_3:-52969812 Msa0124990:CDS
GGGAAGACTGGATTCAAAGT+GGG 0.609217 1_3:-52969811 Msa0124990:CDS
GTAAACATTAGTCCAAGTGA+AGG 0.610678 1_3:+52975592 None:intergenic
GGATGCATGAATAAATTGGT+AGG 0.612056 1_3:-52969538 Msa0124990:three_prime_UTR
ACAACACTATCCCATGCAGC+AGG 0.612753 1_3:-52974892 Msa0124990:intron
ACATTTGTGTCATGGAAGGG+CGG 0.614236 1_3:-52970001 Msa0124990:CDS
TGGAAGTAACAGAAAATACA+AGG 0.617533 1_3:-52969780 Msa0124990:CDS
ATTCAAAGTGGGATTCACGT+TGG 0.618245 1_3:-52969800 Msa0124990:CDS
AAATGAAGCAATTGATACAG+TGG 0.621512 1_3:-52970177 Msa0124990:CDS
CAACTGCACAGCATATGGAA+AGG 0.621679 1_3:-52976468 Msa0124990:CDS
TATCTTCTAGCATATCCTCA+TGG 0.625355 1_3:+52970764 None:intergenic
GGATAGAACAATCCCATAGG+AGG 0.628934 1_3:+52970936 None:intergenic
ACTCTGCTTTGGCTCAGCAG+TGG 0.631545 1_3:-52974064 Msa0124990:CDS
TAAACATTAGTCCAAGTGAA+GGG 0.632014 1_3:+52975593 None:intergenic
AGAAAATCTTGGCCTTGCAG+AGG 0.635161 1_3:-52970623 Msa0124990:CDS
AAGAAATCATATACCTTACG+AGG 0.639184 1_3:+52976282 None:intergenic
GTTGGATAGAACAATCCCAT+AGG 0.642202 1_3:+52970933 None:intergenic
GCTGGATAACTTTCCCACAT+GGG 0.649782 1_3:+52970670 None:intergenic
TGCTAGGTTTAATGACCATG+AGG 0.650205 1_3:-52970779 Msa0124990:intron
TTATCAGGAAGGACTTGCTG+CGG 0.652812 1_3:-52973926 Msa0124990:intron
TGTGTCATGGAAGGGCGGGG+CGG 0.653067 1_3:-52969996 Msa0124990:intron
TGCACTAACCAAGTCCGTGG+TGG 0.653843 1_3:+52970882 None:intergenic
AACATTGTGATAGAAAGTGT+CGG 0.656239 1_3:+52970705 None:intergenic
GCAATGAGGGATATTATAAG+GGG 0.657448 1_3:+52977151 None:intergenic
TCATTCCTATGAGGACAAAG+TGG 0.658798 1_3:-52971092 Msa0124990:CDS
TGAAGCAATTGATACAGTGG+AGG 0.664138 1_3:-52970174 Msa0124990:intron
TCAAAATAACTGAAAACACA+AGG 0.664680 1_3:-52969513 Msa0124990:three_prime_UTR
AGTGACATGTACCTGCTGCA+TGG 0.665261 1_3:+52974881 None:intergenic
AATCTCGTTGTAATCAACCC+AGG 0.667580 1_3:-52977343 Msa0124990:intron
AGTTGGTAATAGCCTCTGCA+AGG 0.670862 1_3:+52970611 None:intergenic
GAATGCACTAACCAAGTCCG+TGG 0.674854 1_3:+52970879 None:intergenic
GTATAATGAGCAATGCAATG+AGG 0.675081 1_3:+52977137 None:intergenic
ATGTGTATCCTCCTCCACCA+CGG 0.675895 1_3:-52970896 Msa0124990:CDS
AGAAATCATATACCTTACGA+GGG 0.682496 1_3:+52976283 None:intergenic
TTGGACTAATGTTTACGAGG+AGG 0.691273 1_3:-52975585 Msa0124990:CDS
TCTGGAATAGACTGGCGGCG+TGG 0.691757 1_3:-52970371 Msa0124990:intron
AAGGGTGAATCTTTCCTGTG+TGG 0.694794 1_3:+52975611 None:intergenic
AAATATTCAAATGTCCTCTG+CGG 0.696571 1_3:+52974916 None:intergenic
TAAACAATATGGTTCAGTGG+GGG 0.697515 1_3:+52974950 None:intergenic
CTGATGGACAAAATCCACAC+AGG 0.705164 1_3:-52975625 Msa0124990:CDS
TCACAAGTTATGTCAGAACG+TGG 0.710551 1_3:-52977370 Msa0124990:CDS
TTATGTCGTCCAATCCGCAG+AGG 0.714929 1_3:-52974930 Msa0124990:CDS
TTAATGGAGGGATGCCCATG+TGG 0.717952 1_3:-52970684 Msa0124990:CDS
TAATGGAGGGATGCCCATGT+GGG 0.735919 1_3:-52970683 Msa0124990:CDS
ATAAACAATATGGTTCAGTG+GGG 0.752024 1_3:+52974949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTGATTTTTTTTTTTATAA+AGG + chr1_3:52969616-52969635 None:intergenic 10.0%
!!! AATAAAACTAAGTTTTTTTA+GGG + chr1_3:52969736-52969755 None:intergenic 10.0%
!!! AAATAAAACTAAGTTTTTTT+AGG + chr1_3:52969737-52969756 None:intergenic 10.0%
!!! TATTTTATTTCGTTAATTTA+TGG - chr1_3:52970780-52970799 Msa0124990:intron 10.0%
!! TTATTTATTTCGTTAATTTA+TGG - chr1_3:52970965-52970984 Msa0124990:intron 10.0%
!!! TTTGTTATAATACTTTATAA+TGG - chr1_3:52971637-52971656 Msa0124990:intron 10.0%
!!! TTTTTTTAATTAAATAAGCA+CGG + chr1_3:52975802-52975821 None:intergenic 10.0%
!!! ATAAAACTAAGTTTTTTTAG+GGG + chr1_3:52969735-52969754 None:intergenic 15.0%
!! TCTATTGTATGAAATTAAAA+AGG - chr1_3:52969941-52969960 Msa0124990:intron 15.0%
!! TTACTCAAATATAAATACAA+CGG - chr1_3:52970004-52970023 Msa0124990:CDS 15.0%
!! ACAAAATTGTTAAATTGAAA+GGG + chr1_3:52970414-52970433 None:intergenic 15.0%
!! AACAAAATTGTTAAATTGAA+AGG + chr1_3:52970415-52970434 None:intergenic 15.0%
!! AAATAAATAATTCAAAAACC+TGG + chr1_3:52970955-52970974 None:intergenic 15.0%
!!! AACAATTTTTTTAATTTGCA+TGG - chr1_3:52971164-52971183 Msa0124990:intron 15.0%
!! TTATAATACTTTATAATGGT+TGG - chr1_3:52971641-52971660 Msa0124990:intron 15.0%
!! AAAAATAAAAAATTCTCACA+TGG - chr1_3:52972481-52972500 Msa0124990:intron 15.0%
!! AACTTAAATTGAATACATTT+GGG + chr1_3:52973001-52973020 None:intergenic 15.0%
!! TAACTTAAATTGAATACATT+TGG + chr1_3:52973002-52973021 None:intergenic 15.0%
!! CAGTAATAATAATTAGTTAT+AGG - chr1_3:52973141-52973160 Msa0124990:intron 15.0%
!! AAAGTTTATATAATGAATGT+AGG - chr1_3:52973840-52973859 Msa0124990:intron 15.0%
!! TGATAAAAAACAATTCAATA+TGG + chr1_3:52973910-52973929 None:intergenic 15.0%
!!! ATATTGAATTGTTTTTTATC+AGG - chr1_3:52973909-52973928 Msa0124990:CDS 15.0%
!!! TACAAAATATATTTTCATGT+TGG - chr1_3:52974564-52974583 Msa0124990:intron 15.0%
!! AATTAATGTAAAGAAAAGAT+TGG + chr1_3:52974721-52974740 None:intergenic 15.0%
!!! TAAACTTTAAAAGATTATGT+AGG + chr1_3:52974928-52974947 None:intergenic 15.0%
!!! CATTTGTATTAATTTTATGA+AGG - chr1_3:52975566-52975585 Msa0124990:CDS 15.0%
!!! TCAATTTGTTTTCAATATTT+AGG + chr1_3:52975638-52975657 None:intergenic 15.0%
!!! TTTTTTAATTAAATAAGCAC+GGG + chr1_3:52975801-52975820 None:intergenic 15.0%
!! TGAAAATATGAAGTTATTAT+TGG + chr1_3:52975965-52975984 None:intergenic 15.0%
!!! AATAATAACTTCATATTTTC+AGG - chr1_3:52975964-52975983 Msa0124990:intron 15.0%
!! AGTTAATAAAGTGATAATTT+GGG + chr1_3:52976147-52976166 None:intergenic 15.0%
!!! TGAATTTTTTTTGCAAAAAA+AGG - chr1_3:52976617-52976636 Msa0124990:intron 15.0%
!! ATAAAACTATTTAATAACCA+CGG + chr1_3:52977925-52977944 None:intergenic 15.0%
!! TTGAAATACCTATAAATTAA+TGG - chr1_3:52978435-52978454 Msa0124990:intron 15.0%
!! ACTTTAATCCATTAATTTAT+AGG + chr1_3:52978446-52978465 None:intergenic 15.0%
!!! TGATGGTTAATTTTAAACTT+TGG - chr1_3:52969443-52969462 Msa0124990:three_prime_UTR 20.0%
!!! TACTCTTTCTCTATATTTTT+CGG + chr1_3:52970226-52970245 None:intergenic 20.0%
!!! AAGAGCATAAGATAAAAAAT+GGG + chr1_3:52970563-52970582 None:intergenic 20.0%
!!! AAAGAGCATAAGATAAAAAA+TGG + chr1_3:52970564-52970583 None:intergenic 20.0%
!! TAAAACATATATACCTCTAA+AGG + chr1_3:52971315-52971334 None:intergenic 20.0%
!!! TTTTTACACACAAGAAAAAA+TGG + chr1_3:52971489-52971508 None:intergenic 20.0%
!! TAGCTTAGAATTTCAAAAAA+GGG + chr1_3:52971843-52971862 None:intergenic 20.0%
!! ATAGCTTAGAATTTCAAAAA+AGG + chr1_3:52971844-52971863 None:intergenic 20.0%
!! CCTAATTCATATAAAAGTAA+CGG + chr1_3:52972723-52972742 None:intergenic 20.0%
!!! TTACTTTTATTATCTCGAAT+TGG - chr1_3:52973338-52973357 Msa0124990:CDS 20.0%
!!! TACTTTTATTATCTCGAATT+GGG - chr1_3:52973339-52973358 Msa0124990:CDS 20.0%
!! AAAAACTAAATGTGTAACAT+TGG + chr1_3:52973654-52973673 None:intergenic 20.0%
!! AAGATGATGATAAAAGTTAA+AGG + chr1_3:52974043-52974062 None:intergenic 20.0%
!!! AATTTTCATAGAAACTAAGA+TGG + chr1_3:52974329-52974348 None:intergenic 20.0%
!! CTATGAAAATTTACATTTAC+TGG - chr1_3:52974338-52974357 Msa0124990:CDS 20.0%
!! ATAGATTGAAAAATAAAAGC+TGG - chr1_3:52974450-52974469 Msa0124990:intron 20.0%
!! TTTAAAAGATTATGTAGGAT+GGG + chr1_3:52974923-52974942 None:intergenic 20.0%
!! AAACATTTGTATTAGGTATT+TGG - chr1_3:52974956-52974975 Msa0124990:CDS 20.0%
!! TAAATACAAATGAATACAGA+GGG + chr1_3:52974986-52975005 None:intergenic 20.0%
!!! ACAGAATTTTATTATTAGAG+AGG + chr1_3:52975069-52975088 None:intergenic 20.0%
!! TTGAAAACAAATTGAACAAT+TGG - chr1_3:52975643-52975662 Msa0124990:intron 20.0%
!! GAGTTAATAAAGTGATAATT+TGG + chr1_3:52976148-52976167 None:intergenic 20.0%
!! TCAGCTATGAATTATTAAAA+TGG + chr1_3:52976181-52976200 None:intergenic 20.0%
!! ATGTTCAATTTCAATGTTAT+GGG + chr1_3:52976590-52976609 None:intergenic 20.0%
!! ATTTAAATTGAACTCAAGTT+TGG + chr1_3:52976688-52976707 None:intergenic 20.0%
!! TTATCTAGTATCTTATCTAT+AGG - chr1_3:52976707-52976726 Msa0124990:intron 20.0%
!!! ATTATTTTGTAGCATACAAT+TGG - chr1_3:52977380-52977399 Msa0124990:CDS 20.0%
!!! AAGTAAATTCAATTGATTCT+TGG - chr1_3:52978271-52978290 Msa0124990:intron 20.0%
! CAATCAAAAGCAAATCAATT+AGG + chr1_3:52969480-52969499 None:intergenic 25.0%
!!! CTTTTTTGTCGAATTTTTTC+TGG - chr1_3:52969643-52969662 Msa0124990:three_prime_UTR 25.0%
! CCTCAAAAAAAAAAAAGACT+GGG + chr1_3:52969687-52969706 None:intergenic 25.0%
! TCCTCAAAAAAAAAAAAGAC+TGG + chr1_3:52969688-52969707 None:intergenic 25.0%
!!! TTTTAGGGGAAAATAAAACT+AGG + chr1_3:52969721-52969740 None:intergenic 25.0%
!!! GATTTTCTATAGTTTTGCTA+TGG + chr1_3:52969783-52969802 None:intergenic 25.0%
! TAAATACAACGGAAAAAGTA+TGG - chr1_3:52970015-52970034 Msa0124990:CDS 25.0%
!!! TGACTTTATGTTATTTTCTC+AGG - chr1_3:52970638-52970657 Msa0124990:CDS 25.0%
! TGCAAATATTAGAATTGGAT+TGG - chr1_3:52970664-52970683 Msa0124990:CDS 25.0%
!!! TCTATGCAAGTTTTTTTGTT+GGG - chr1_3:52971035-52971054 Msa0124990:intron 25.0%
!! TCAATAGTTTTTGAATTTGC+AGG + chr1_3:52971067-52971086 None:intergenic 25.0%
!!! AAAACTATTGATTTTAGTCC+CGG - chr1_3:52971076-52971095 Msa0124990:CDS 25.0%
!! TAATTTTATTGGACCATGTA+TGG - chr1_3:52971125-52971144 Msa0124990:intron 25.0%
! ATTCTAAGCAAAAAAGCTTA+TGG - chr1_3:52971191-52971210 Msa0124990:intron 25.0%
! TTCTAAGCAAAAAAGCTTAT+GGG - chr1_3:52971192-52971211 Msa0124990:intron 25.0%
! ATAGCACGATAAAATAATGA+AGG + chr1_3:52971268-52971287 None:intergenic 25.0%
!! ATGCTACATTTTGCTAATAT+TGG - chr1_3:52971457-52971476 Msa0124990:intron 25.0%
! TAAGATCAAAATCTTCAACA+TGG + chr1_3:52971738-52971757 None:intergenic 25.0%
!!! ATGTATTTTTGTATGCTGTT+GGG + chr1_3:52971957-52971976 None:intergenic 25.0%
!!! TATGTATTTTTGTATGCTGT+TGG + chr1_3:52971958-52971977 None:intergenic 25.0%
! GAATCATAGTATTCATTGAA+GGG + chr1_3:52972074-52972093 None:intergenic 25.0%
! ATACTATGATTCCGTATATT+TGG - chr1_3:52972082-52972101 Msa0124990:intron 25.0%
!! GACAGTATTTTCCAAATATA+CGG + chr1_3:52972096-52972115 None:intergenic 25.0%
! GAAAATACTGTCAAATACTT+AGG - chr1_3:52972104-52972123 Msa0124990:intron 25.0%
!!! AAATACTTAGGTTGTGTTTT+TGG - chr1_3:52972116-52972135 Msa0124990:intron 25.0%
! ACCAAGTAACTAATATTAGA+CGG - chr1_3:52972443-52972462 Msa0124990:intron 25.0%
!!! TTACACTTTAAGTTGTTAGT+CGG - chr1_3:52972626-52972645 Msa0124990:intron 25.0%
!!! CCGTTACTTTTATATGAATT+AGG - chr1_3:52972720-52972739 Msa0124990:intron 25.0%
!! AAATTGAATACATTTGGGTT+AGG + chr1_3:52972996-52973015 None:intergenic 25.0%
!!! AGGATTTGTTGTCATTAATT+TGG - chr1_3:52973256-52973275 Msa0124990:intron 25.0%
!!! GGATTTGTTGTCATTAATTT+GGG - chr1_3:52973257-52973276 Msa0124990:intron 25.0%
! GTGTGAAATACAAATTCAAA+GGG + chr1_3:52973689-52973708 None:intergenic 25.0%
! AGTGTGAAATACAAATTCAA+AGG + chr1_3:52973690-52973709 None:intergenic 25.0%
!!! ATTTCCTTTATTTCTGTTTG+TGG + chr1_3:52973745-52973764 None:intergenic 25.0%
!!! TGAATGTAGGATTTCTTTTT+TGG - chr1_3:52973853-52973872 Msa0124990:CDS 25.0%
!!! TGAATTGTTTTTTATCAGGA+AGG - chr1_3:52973913-52973932 Msa0124990:CDS 25.0%
! TTTCAAAGGTTTAAGCTATT+AGG + chr1_3:52974133-52974152 None:intergenic 25.0%
!! TTTAGGGAAAACAACTTTTA+TGG - chr1_3:52974242-52974261 Msa0124990:intron 25.0%
! GAAACAGTTTCTATTTACTA+TGG - chr1_3:52974266-52974285 Msa0124990:CDS 25.0%
! CAAGCTAATTTATTTGAAGA+TGG + chr1_3:52974377-52974396 None:intergenic 25.0%
!!! AGTTTTAAGAGGAGAAATTT+TGG + chr1_3:52974893-52974912 None:intergenic 25.0%
!! CTTTAAAAGATTATGTAGGA+TGG + chr1_3:52974924-52974943 None:intergenic 25.0%
! CAAACACAAACATTTGTATT+AGG - chr1_3:52974949-52974968 Msa0124990:CDS 25.0%
! GTAAATACAAATGAATACAG+AGG + chr1_3:52974987-52975006 None:intergenic 25.0%
!! GAATTTTATTATTAGAGAGG+CGG + chr1_3:52975066-52975085 None:intergenic 25.0%
! AAACACAAAATCTCATTAAG+CGG + chr1_3:52975205-52975224 None:intergenic 25.0%
! ACAGTATAAAATTAGGCATT+TGG + chr1_3:52975242-52975261 None:intergenic 25.0%
! AGCTGATACAGTATAAAATT+AGG + chr1_3:52975249-52975268 None:intergenic 25.0%
! TGGATTTAGTAAAAGTAAAG+AGG + chr1_3:52975366-52975385 None:intergenic 25.0%
!! ACTTTTACTAAATCCATCAT+AGG - chr1_3:52975370-52975389 Msa0124990:intron 25.0%
! TGAGAAGTTGAAAGAATTTA+TGG - chr1_3:52975674-52975693 Msa0124990:intron 25.0%
! GAGAAGTTGAAAGAATTTAT+GGG - chr1_3:52975675-52975694 Msa0124990:intron 25.0%
! AGAAGTTGAAAGAATTTATG+GGG - chr1_3:52975676-52975695 Msa0124990:intron 25.0%
!!! TTCTGAATATTTTTAACTGG+TGG + chr1_3:52975764-52975783 None:intergenic 25.0%
!!! GTGTTCTGAATATTTTTAAC+TGG + chr1_3:52975767-52975786 None:intergenic 25.0%
! TTGTATGTGTATTTATGCAA+TGG - chr1_3:52975886-52975905 Msa0124990:intron 25.0%
!!! CATATTTTCAGGATATATCA+AGG - chr1_3:52975975-52975994 Msa0124990:intron 25.0%
! TTTAACATTAACAGATCGAT+TGG + chr1_3:52976067-52976086 None:intergenic 25.0%
! TGCATTTACATTAATGTCAA+TGG - chr1_3:52976410-52976429 Msa0124990:intron 25.0%
! ATTTACATTAATGTCAATGG+CGG - chr1_3:52976413-52976432 Msa0124990:intron 25.0%
!!! ATTTTCTAAAGACTACAATG+TGG + chr1_3:52976543-52976562 None:intergenic 25.0%
! CATGTTCAATTTCAATGTTA+TGG + chr1_3:52976591-52976610 None:intergenic 25.0%
! ACTTTCTATCACAATGTTAA+TGG - chr1_3:52977150-52977169 Msa0124990:CDS 25.0%
!! CCAAGATTTTCTTCTTTTTT+CGG + chr1_3:52977219-52977238 None:intergenic 25.0%
! CTTGAACTCTATGTATAAAA+TGG + chr1_3:52977305-52977324 None:intergenic 25.0%
!!! ACAAAATCATTGATAATGCT+AGG + chr1_3:52977577-52977596 None:intergenic 25.0%
!!! ACTTTTTCAAGTTTAACTGA+TGG - chr1_3:52977602-52977621 Msa0124990:intron 25.0%
! CTATTAGGTTATACAATCAA+GGG - chr1_3:52977818-52977837 Msa0124990:intron 25.0%
! ATAGATTACTGCTAATTTCA+TGG - chr1_3:52978168-52978187 Msa0124990:intron 25.0%
!!! ATTTCATGGATTCAAGTTTT+TGG - chr1_3:52978182-52978201 Msa0124990:intron 25.0%
! TCAAAATAACTGAAAACACA+AGG - chr1_3:52978337-52978356 Msa0124990:intron 25.0%
! GTATTACATGAATTGAATTC+TGG - chr1_3:52978388-52978407 Msa0124990:intron 25.0%
TCAGGGTAATTAAAGTTTGA+TGG - chr1_3:52969426-52969445 Msa0124990:three_prime_UTR 30.0%
!!! CCCAGTCTTTTTTTTTTTTG+AGG - chr1_3:52969684-52969703 Msa0124990:three_prime_UTR 30.0%
!! TATAGTTTTGCTATGGATGT+AGG + chr1_3:52969776-52969795 None:intergenic 30.0%
! GTCGTCTATCTGAAATTAAA+CGG + chr1_3:52970150-52970169 None:intergenic 30.0%
TTGCAAACTCTAATTTCCAA+TGG - chr1_3:52970363-52970382 Msa0124990:CDS 30.0%
!!! TGGATTTTTTTTGCATACCT+GGG + chr1_3:52970527-52970546 None:intergenic 30.0%
!!! TTGGATTTTTTTTGCATACC+TGG + chr1_3:52970528-52970547 None:intergenic 30.0%
GGTTCTGCAAATATTAGAAT+TGG - chr1_3:52970659-52970678 Msa0124990:CDS 30.0%
TGCAATGAGGGATATTATAA+GGG + chr1_3:52970703-52970722 None:intergenic 30.0%
ATGCAATGAGGGATATTATA+AGG + chr1_3:52970704-52970723 None:intergenic 30.0%
TATAATGAGCAATGCAATGA+GGG + chr1_3:52970715-52970734 None:intergenic 30.0%
! ATTCTTCTTAGGAACTTGTT+TGG + chr1_3:52970738-52970757 None:intergenic 30.0%
TGATCTTGAACATTCTTCTT+AGG + chr1_3:52970749-52970768 None:intergenic 30.0%
TAAGAAGAATGTTCAAGATC+AGG - chr1_3:52970748-52970767 Msa0124990:CDS 30.0%
! TCCTGCAATTATAGTGTTTT+TGG - chr1_3:52970821-52970840 Msa0124990:intron 30.0%
ACCAAAAACACTATAATTGC+AGG + chr1_3:52970825-52970844 None:intergenic 30.0%
!! AATTCTAAAACCTGATCTCA+GGG + chr1_3:52970854-52970873 None:intergenic 30.0%
!! TAATTCTAAAACCTGATCTC+AGG + chr1_3:52970855-52970874 None:intergenic 30.0%
! TCCTGCAATTATAGTGTTTT+TGG - chr1_3:52970821-52970840 Msa0124990:intron 30.0%
ACCAAAAACACTATAATTGC+AGG + chr1_3:52970825-52970844 None:intergenic 30.0%
! TCCTGCAATTATAGTGTTTT+TGG - chr1_3:52970821-52970840 Msa0124990:intron 30.0%
ACCAAAAACACTATAATTGC+AGG + chr1_3:52970825-52970844 None:intergenic 30.0%
!!! GTCTATGCAAGTTTTTTTGT+TGG - chr1_3:52971034-52971053 Msa0124990:intron 30.0%
!!! AAACTATTGATTTTAGTCCC+GGG - chr1_3:52971077-52971096 Msa0124990:CDS 30.0%
TCTAAGCAAAAAAGCTTATG+GGG - chr1_3:52971193-52971212 Msa0124990:intron 30.0%
AGAAATCATATACCTTACGA+GGG + chr1_3:52971570-52971589 None:intergenic 30.0%
AAGAAATCATATACCTTACG+AGG + chr1_3:52971571-52971590 None:intergenic 30.0%
CATGAAATCAAACAAAACTG+AGG + chr1_3:52971617-52971636 None:intergenic 30.0%
TTGGGAATGCATTTCAAATA+GGG - chr1_3:52971694-52971713 Msa0124990:intron 30.0%
AAGGGTCAATCAAATTACAA+CGG + chr1_3:52971825-52971844 None:intergenic 30.0%
! CTAAGCTATGTTGTTTATCT+CGG - chr1_3:52971855-52971874 Msa0124990:CDS 30.0%
TATCTGCTATATCACTTTAG+CGG + chr1_3:52971910-52971929 None:intergenic 30.0%
TAAAGTGATATAGCAGATAG+CGG - chr1_3:52971911-52971930 Msa0124990:intron 30.0%
CTGTTGGGATTTATATTTAG+TGG + chr1_3:52971942-52971961 None:intergenic 30.0%
GGAATCATAGTATTCATTGA+AGG + chr1_3:52972075-52972094 None:intergenic 30.0%
ATTGTACTAAATGCACAGAT+GGG - chr1_3:52972197-52972216 Msa0124990:intron 30.0%
TAAACATTAGTCCAAGTGAA+GGG + chr1_3:52972260-52972279 None:intergenic 30.0%
! ATGTCAACTAGTTTAGCATT+TGG - chr1_3:52972401-52972420 Msa0124990:intron 30.0%
ACCGTCTAATATTAGTTACT+TGG + chr1_3:52972447-52972466 None:intergenic 30.0%
ACTAATATTAGACGGTAATC+AGG - chr1_3:52972451-52972470 Msa0124990:intron 30.0%
! TCAAATCTGTACCTTCTTTT+GGG + chr1_3:52972814-52972833 None:intergenic 30.0%
! TTCAAATCTGTACCTTCTTT+TGG + chr1_3:52972815-52972834 None:intergenic 30.0%
! AAAAGAAGGTACAGATTTGA+AGG - chr1_3:52972814-52972833 Msa0124990:intron 30.0%
AAGTTCAGAAAGTTCATTTG+TGG - chr1_3:52972857-52972876 Msa0124990:intron 30.0%
ATAAACAATATGGTTCAGTG+GGG + chr1_3:52972904-52972923 None:intergenic 30.0%
CATAAACAATATGGTTCAGT+GGG + chr1_3:52972905-52972924 None:intergenic 30.0%
ACATAAACAATATGGTTCAG+TGG + chr1_3:52972906-52972925 None:intergenic 30.0%
ATTGGACGACATAAACAATA+TGG + chr1_3:52972914-52972933 None:intergenic 30.0%
AAATATTCAAATGTCCTCTG+CGG + chr1_3:52972937-52972956 None:intergenic 30.0%
AATGCAACAGCTAACTTATA+AGG + chr1_3:52973076-52973095 None:intergenic 30.0%
! AGATATGCTAGTGTTTGTTT+TGG - chr1_3:52973226-52973245 Msa0124990:intron 30.0%
!!! GTGTTTGTTTTGGTGATTTA+AGG - chr1_3:52973236-52973255 Msa0124990:intron 30.0%
! GTCATTAATTTGGGAGTTTA+TGG - chr1_3:52973266-52973285 Msa0124990:intron 30.0%
!! ATATTGGTTCCCAAATTGAA+TGG - chr1_3:52973310-52973329 Msa0124990:CDS 30.0%
TGAAAGCAAGAAATAATCAG+AGG + chr1_3:52973452-52973471 None:intergenic 30.0%
!!! ACACATTTAGTTTTTCCTGT+TGG - chr1_3:52973659-52973678 Msa0124990:intron 30.0%
GAATTTGTATTTCACACTTC+TGG - chr1_3:52973692-52973711 Msa0124990:intron 30.0%
! AACTTTTAGCAGCAAATAGA+AGG + chr1_3:52973826-52973845 None:intergenic 30.0%
!!! TGTAGGATTTCTTTTTTGGT+AGG - chr1_3:52973857-52973876 Msa0124990:CDS 30.0%
GACATCAATTATATGCATAG+AGG - chr1_3:52973999-52974018 Msa0124990:intron 30.0%
CATCTTGTATTGTTCATTTC+TGG - chr1_3:52974077-52974096 Msa0124990:CDS 30.0%
AATCAAGACTCATAACAACT+TGG + chr1_3:52974193-52974212 None:intergenic 30.0%
!! TCTTGATTCTTGATAGTGAT+TGG - chr1_3:52974205-52974224 Msa0124990:intron 30.0%
!! CTTGATTCTTGATAGTGATT+GGG - chr1_3:52974206-52974225 Msa0124990:intron 30.0%
!! AAAAGTTGTTTTCCCTAAAG+TGG + chr1_3:52974241-52974260 None:intergenic 30.0%
GCTAATTTATTTGAAGATGG+TGG + chr1_3:52974374-52974393 None:intergenic 30.0%
CAAATCTGATAGATAATTCG+AGG + chr1_3:52974402-52974421 None:intergenic 30.0%
! ACTGCAAAAACTCTAACTTT+TGG - chr1_3:52974533-52974552 Msa0124990:intron 30.0%
!!! GAGACAATTTCATTGGTTTT+TGG + chr1_3:52974788-52974807 None:intergenic 30.0%
AAGAGAAGAGACAATTTCAT+TGG + chr1_3:52974795-52974814 None:intergenic 30.0%
AGTTTATTGAGATGAAGTGA+AGG - chr1_3:52974824-52974843 Msa0124990:intron 30.0%
TTGTATTTACTGTGTGTGTT+TGG - chr1_3:52974997-52975016 Msa0124990:CDS 30.0%
TGTATTTACTGTGTGTGTTT+GGG - chr1_3:52974998-52975017 Msa0124990:CDS 30.0%
CAGATTCATTCAATTTCTCT+TGG - chr1_3:52975129-52975148 Msa0124990:intron 30.0%
GAACATAACAGTCATCTTTA+AGG + chr1_3:52975290-52975309 None:intergenic 30.0%
! GTAAAGAGGCTAAACTTTTA+TGG + chr1_3:52975352-52975371 None:intergenic 30.0%
TCAGCACATTAGATACAAAA+TGG + chr1_3:52975855-52975874 None:intergenic 30.0%
ACTACGACAAACACAAAATT+TGG + chr1_3:52975928-52975947 None:intergenic 30.0%
AACATATCTGTTCGAATTTG+TGG + chr1_3:52976037-52976056 None:intergenic 30.0%
AAAAACGAGATAACAGCTTT+AGG + chr1_3:52976322-52976341 None:intergenic 30.0%
! TTTTTCACTCATTTCTCTCT+CGG - chr1_3:52976358-52976377 Msa0124990:intron 30.0%
ACTATGGCATGTTTATATAG+GGG + chr1_3:52976451-52976470 None:intergenic 30.0%
CACTATGGCATGTTTATATA+GGG + chr1_3:52976452-52976471 None:intergenic 30.0%
TCTAGTATCTTATCTATAGG+AGG - chr1_3:52976710-52976729 Msa0124990:intron 30.0%
CTAGTATCTTATCTATAGGA+GGG - chr1_3:52976711-52976730 Msa0124990:intron 30.0%
TAGTATCTTATCTATAGGAG+GGG - chr1_3:52976712-52976731 Msa0124990:intron 30.0%
TATCTACTGGCAAAATTTGA+GGG + chr1_3:52976856-52976875 None:intergenic 30.0%
TTATCTACTGGCAAAATTTG+AGG + chr1_3:52976857-52976876 None:intergenic 30.0%
AATGACAAACACTATTGCAT+AGG - chr1_3:52976889-52976908 Msa0124990:intron 30.0%
TGCAAAATTGTTCACAAACA+TGG + chr1_3:52977026-52977045 None:intergenic 30.0%
! AACATTGTGATAGAAAGTGT+CGG + chr1_3:52977148-52977167 None:intergenic 30.0%
TTCTATCACAATGTTAATGG+AGG - chr1_3:52977153-52977172 Msa0124990:CDS 30.0%
TCTATCACAATGTTAATGGA+GGG - chr1_3:52977154-52977173 Msa0124990:CDS 30.0%
CCGAAAAAAGAAGAAAATCT+TGG - chr1_3:52977216-52977235 Msa0124990:intron 30.0%
GAACTCTATGTATAAAATGG+AGG + chr1_3:52977302-52977321 None:intergenic 30.0%
!! TCTTTGGTGATTATTTTCAC+AGG - chr1_3:52977336-52977355 Msa0124990:intron 30.0%
! AGAAAGTGACACATTTTATC+TGG - chr1_3:52977461-52977480 Msa0124990:intron 30.0%
!! ACATTTTATCTGGAATAGAC+TGG - chr1_3:52977471-52977490 Msa0124990:intron 30.0%
! AGGTTTGTTTCAATTTCCAT+TGG - chr1_3:52977537-52977556 Msa0124990:intron 30.0%
ACTGTATCAATTGCTTCATT+TGG + chr1_3:52977674-52977693 None:intergenic 30.0%
AAATGAAGCAATTGATACAG+TGG - chr1_3:52977673-52977692 Msa0124990:intron 30.0%
!! TGTTTCTTCTCTTTGCTATT+AGG - chr1_3:52977803-52977822 Msa0124990:intron 30.0%
GCTATTAGGTTATACAATCA+AGG - chr1_3:52977817-52977836 Msa0124990:intron 30.0%
AGAATCTGCAAAAACATTAC+AGG + chr1_3:52977981-52978000 None:intergenic 30.0%
!! GTAATGTTTTTGCAGATTCT+TGG - chr1_3:52977981-52978000 Msa0124990:intron 30.0%
TGGAAGTAACAGAAAATACA+AGG - chr1_3:52978070-52978089 Msa0124990:intron 30.0%
TGTGTTACATGAATTCTTGA+AGG - chr1_3:52978120-52978139 Msa0124990:intron 30.0%
!! GAAACTTTAAGATGTATGAC+AGG + chr1_3:52978146-52978165 None:intergenic 30.0%
! ATTCTTGGAGTACTTGATTT+AGG - chr1_3:52978286-52978305 Msa0124990:intron 30.0%
TACATGAATTGAATTCTGGA+AGG - chr1_3:52978392-52978411 Msa0124990:intron 30.0%
!! TTCTAAAGTTTCGACGTTCA+GGG - chr1_3:52969409-52969428 Msa0124990:three_prime_UTR 35.0%
! ACAACGGAAAAAGTATGGAA+TGG - chr1_3:52970020-52970039 Msa0124990:CDS 35.0%
!! TTCTCTATATTTTTCGGACC+AGG + chr1_3:52970220-52970239 None:intergenic 35.0%
TTGCTAAGAACAAGAACAAG+AGG - chr1_3:52970325-52970344 Msa0124990:intron 35.0%
!! AAGATGAGAGAAAGTACCAT+TGG + chr1_3:52970382-52970401 None:intergenic 35.0%
AAATGGGTAATGCGCAAAAT+TGG + chr1_3:52970547-52970566 None:intergenic 35.0%
GCAATGAGGGATATTATAAG+GGG + chr1_3:52970702-52970721 None:intergenic 35.0%
GTATAATGAGCAATGCAATG+AGG + chr1_3:52970716-52970735 None:intergenic 35.0%
AATTCAAAAACCTGGTCTCA+GGG + chr1_3:52970947-52970966 None:intergenic 35.0%
TAATTCAAAAACCTGGTCTC+AGG + chr1_3:52970948-52970967 None:intergenic 35.0%
!! TCTTTGGAACTGTTTAAGCT+TGG - chr1_3:52971675-52971694 Msa0124990:intron 35.0%
!! CTTTGGAACTGTTTAAGCTT+GGG - chr1_3:52971676-52971695 Msa0124990:intron 35.0%
CTTGGGAATGCATTTCAAAT+AGG - chr1_3:52971693-52971712 Msa0124990:intron 35.0%
TGACAGACACATATCATTTG+TGG - chr1_3:52971791-52971810 Msa0124990:CDS 35.0%
TATATCACTTTAGCGGTTTC+AGG + chr1_3:52971903-52971922 None:intergenic 35.0%
AAAGTGATATAGCAGATAGC+GGG - chr1_3:52971912-52971931 Msa0124990:intron 35.0%
CATCTGTGCATTTAGTACAA+TGG + chr1_3:52972198-52972217 None:intergenic 35.0%
CATTGTACTAAATGCACAGA+TGG - chr1_3:52972196-52972215 Msa0124990:intron 35.0%
TTGTACTAAATGCACAGATG+GGG - chr1_3:52972198-52972217 Msa0124990:intron 35.0%
GTAAACATTAGTCCAAGTGA+AGG + chr1_3:52972261-52972280 None:intergenic 35.0%
CAGCATTAGGTAAGAGTAAA+TGG - chr1_3:52972309-52972328 Msa0124990:intron 35.0%
GGTACAGATTTGAAGGAAAT+TGG - chr1_3:52972821-52972840 Msa0124990:intron 35.0%
TAAACAATATGGTTCAGTGG+GGG + chr1_3:52972903-52972922 None:intergenic 35.0%
ATTTGGGAACCAATATCCAA+TGG + chr1_3:52973306-52973325 None:intergenic 35.0%
GTAAAGTCGCCATTCAATTT+GGG + chr1_3:52973322-52973341 None:intergenic 35.0%
AGTAAAGTCGCCATTCAATT+TGG + chr1_3:52973323-52973342 None:intergenic 35.0%
ACAACAGACTCTAGATTACT+GGG + chr1_3:52973396-52973415 None:intergenic 35.0%
CATTCTACATCACTATTGCT+TGG - chr1_3:52973470-52973489 Msa0124990:intron 35.0%
TTGAGGATCTACGTTCTATT+TGG - chr1_3:52973508-52973527 Msa0124990:intron 35.0%
TGAGGATCTACGTTCTATTT+GGG - chr1_3:52973509-52973528 Msa0124990:intron 35.0%
TACATGTTTCTTTCATTGCG+AGG + chr1_3:52973564-52973583 None:intergenic 35.0%
CCACGATTATCAAATGTTTC+TGG + chr1_3:52973606-52973625 None:intergenic 35.0%
! CCAGAAACATTTGATAATCG+TGG - chr1_3:52973603-52973622 Msa0124990:intron 35.0%
!! ATGTGTAACATTGGCTTTGA+AGG + chr1_3:52973645-52973664 None:intergenic 35.0%
!! CTTTATTTCTGTTTGTGGCA+TGG + chr1_3:52973740-52973759 None:intergenic 35.0%
CATGCCACAAACAGAAATAA+AGG - chr1_3:52973738-52973757 Msa0124990:intron 35.0%
GGAAATTCTATCTGTAGTAC+TGG - chr1_3:52973759-52973778 Msa0124990:intron 35.0%
ACAGCTTGTGTAGTGAATAT+TGG - chr1_3:52973967-52973986 Msa0124990:intron 35.0%
GTCAGTAGCAACTATTTCAA+AGG + chr1_3:52974147-52974166 None:intergenic 35.0%
TGAAATAGTTGCTACTGACA+TGG - chr1_3:52974148-52974167 Msa0124990:intron 35.0%
ATAAAAGCTGGCCAAGTATT+TGG - chr1_3:52974462-52974481 Msa0124990:intron 35.0%
GCAGTTAACTACCAAATACT+TGG + chr1_3:52974476-52974495 None:intergenic 35.0%
!!! AACTGCTTCTTTTGCTGTTT+AGG - chr1_3:52974490-52974509 Msa0124990:intron 35.0%
! GTTAGAGTTTTTGCAGTTGA+AGG + chr1_3:52974530-52974549 None:intergenic 35.0%
! GCAAAAACTCTAACTTTTGG+CGG - chr1_3:52974536-52974555 Msa0124990:intron 35.0%
TTTCATGTTGGACAAGTTAC+TGG - chr1_3:52974576-52974595 Msa0124990:intron 35.0%
AACCTGAAGAATCTGAACTT+AGG - chr1_3:52975174-52975193 Msa0124990:intron 35.0%
ACCTGAAGAATCTGAACTTA+GGG - chr1_3:52975175-52975194 Msa0124990:intron 35.0%
! CATAACAGTCATCTTTAAGG+AGG + chr1_3:52975287-52975306 None:intergenic 35.0%
TTTATGGCAAAGTGCAATCT+AGG + chr1_3:52975336-52975355 None:intergenic 35.0%
! AATACAGTGTTCAGCCTTTT+TGG + chr1_3:52975443-52975462 None:intergenic 35.0%
GCTGAACACTGTATTTCATA+AGG - chr1_3:52975448-52975467 Msa0124990:intron 35.0%
!! GGAGTTTTGTAAGTTGTAAG+TGG + chr1_3:52975743-52975762 None:intergenic 35.0%
GATGTCTTTGTGTATAGAGA+AGG + chr1_3:52976003-52976022 None:intergenic 35.0%
CGGCTTCATTATCTCTTAAT+TGG - chr1_3:52976378-52976397 Msa0124990:intron 35.0%
CCACTATGGCATGTTTATAT+AGG + chr1_3:52976453-52976472 None:intergenic 35.0%
CCTATATAAACATGCCATAG+TGG - chr1_3:52976450-52976469 Msa0124990:CDS 35.0%
ATCGAAACAGCATTATCTAC+TGG + chr1_3:52976869-52976888 None:intergenic 35.0%
ACATCAGGAACAAAAAACGT+TGG + chr1_3:52976938-52976957 None:intergenic 35.0%
! ATTTTGCATTTACACAACCC+TGG - chr1_3:52977038-52977057 Msa0124990:intron 35.0%
ATGGTCATTAAACCTAGCAA+GGG + chr1_3:52977070-52977089 None:intergenic 35.0%
TATCTTCTAGCATATCCTCA+TGG + chr1_3:52977089-52977108 None:intergenic 35.0%
AGGATATGCTAGAAGATACA+TGG - chr1_3:52977091-52977110 Msa0124990:intron 35.0%
AATCACCAAAGAGCTAAACA+AGG + chr1_3:52977328-52977347 None:intergenic 35.0%
!! TTTTATCTGGAATAGACTGG+CGG - chr1_3:52977474-52977493 Msa0124990:intron 35.0%
GTATCAATTGCTTCATTTGG+AGG + chr1_3:52977671-52977690 None:intergenic 35.0%
ACTAGAGCAATTGCTTCATT+TGG + chr1_3:52977707-52977726 None:intergenic 35.0%
CAAATCCAACATTTGTGTCA+TGG - chr1_3:52977841-52977860 Msa0124990:intron 35.0%
CTTCATTAATTTCTTCTCCG+TGG - chr1_3:52977905-52977924 Msa0124990:intron 35.0%
! ATTCTTGGAGTACTTGATGT+AGG - chr1_3:52977996-52978015 Msa0124990:intron 35.0%
! TTGGAGTACTTGATTTAGGT+AGG - chr1_3:52978290-52978309 Msa0124990:intron 35.0%
! TGGAGTACTTGATTTAGGTA+GGG - chr1_3:52978291-52978310 Msa0124990:intron 35.0%
GTAGGGATGCATGAATAAAT+TGG - chr1_3:52978308-52978327 Msa0124990:intron 35.0%
GGATGCATGAATAAATTGGT+AGG - chr1_3:52978312-52978331 Msa0124990:intron 35.0%
!! CTTCTAAAGTTTCGACGTTC+AGG - chr1_3:52969408-52969427 Msa0124990:three_prime_UTR 40.0%
GATTTCCTGCTGTTACAGTA+GGG - chr1_3:52970042-52970061 Msa0124990:intron 40.0%
CTCGATCGTACAGTTATGAT+CGG + chr1_3:52970090-52970109 None:intergenic 40.0%
TTTGCTACAGCATCAAAACC+TGG - chr1_3:52970199-52970218 Msa0124990:CDS 40.0%
TCTCATGTGTTCTATGTCAC+AGG - chr1_3:52970434-52970453 Msa0124990:intron 40.0%
! CGTTCTGACATAACTTGTGA+AGG + chr1_3:52970480-52970499 None:intergenic 40.0%
TCACAAGTTATGTCAGAACG+TGG - chr1_3:52970480-52970499 Msa0124990:CDS 40.0%
!! TGGGTTGATTACAACGAGAT+TGG + chr1_3:52970508-52970527 None:intergenic 40.0%
AATCTCGTTGTAATCAACCC+AGG - chr1_3:52970507-52970526 Msa0124990:intron 40.0%
TCCAATAAAATTACGCCCCA+TGG + chr1_3:52971118-52971137 None:intergenic 40.0%
!! GTTGTTTTCGCTTCCTTTAG+AGG - chr1_3:52971299-52971318 Msa0124990:intron 40.0%
AGTTACAACTGCACAGCATA+TGG - chr1_3:52971377-52971396 Msa0124990:intron 40.0%
AACTGCACAGCATATGGAAA+GGG - chr1_3:52971383-52971402 Msa0124990:intron 40.0%
ACAGCATATGGAAAGGGAAA+AGG - chr1_3:52971389-52971408 Msa0124990:intron 40.0%
ACTGTTGAAGATACCGTTTC+TGG - chr1_3:52971519-52971538 Msa0124990:intron 40.0%
GAAGGTTCTTCATCCAGAAA+CGG + chr1_3:52971535-52971554 None:intergenic 40.0%
GTTGGAACTTCTTCGTTCTT+TGG - chr1_3:52971659-52971678 Msa0124990:intron 40.0%
CAGACACATATCATTTGTGG+AGG - chr1_3:52971794-52971813 Msa0124990:CDS 40.0%
!! ACTTTAGCGGTTTCAGGTTT+GGG + chr1_3:52971897-52971916 None:intergenic 40.0%
CACTTGGACTAATGTTTACG+AGG - chr1_3:52972262-52972281 Msa0124990:intron 40.0%
TTGGACTAATGTTTACGAGG+AGG - chr1_3:52972265-52972284 Msa0124990:intron 40.0%
TCGTCTTCAGTTTCAGCATT+AGG - chr1_3:52972296-52972315 Msa0124990:intron 40.0%
TCACATGGAAGTTTGCATGT+AGG - chr1_3:52972496-52972515 Msa0124990:intron 40.0%
AGTTTGCATGTAGGTATCTC+AGG - chr1_3:52972505-52972524 Msa0124990:intron 40.0%
! CCATGTTCTAAGTTCAAGAC+AGG + chr1_3:52972566-52972585 None:intergenic 40.0%
CCTGTCTTGAACTTAGAACA+TGG - chr1_3:52972563-52972582 Msa0124990:intron 40.0%
AGATGAGACTAGTGAGTCTT+TGG - chr1_3:52972787-52972806 Msa0124990:intron 40.0%
TTGCTTGAGCCATTGGATAT+TGG - chr1_3:52973294-52973313 Msa0124990:intron 40.0%
CACAACAGACTCTAGATTAC+TGG + chr1_3:52973397-52973416 None:intergenic 40.0%
!! CTATTGCTTGGCTATTTTGC+AGG - chr1_3:52973482-52973501 Msa0124990:intron 40.0%
! ATCTACGTTCTATTTGGGAC+TGG - chr1_3:52973514-52973533 Msa0124990:intron 40.0%
AATTCAAAGGGAACTCCAAC+AGG + chr1_3:52973677-52973696 None:intergenic 40.0%
! TGTAGTGAATATTGGTGCTC+AGG - chr1_3:52973975-52973994 Msa0124990:intron 40.0%
! ATTAGGTGAAAGCACATGCA+TGG + chr1_3:52974116-52974135 None:intergenic 40.0%
ATAGTTGCTACTGACATGGT+AGG - chr1_3:52974152-52974171 Msa0124990:intron 40.0%
!! TGGGTTTACTTTGCCACTTT+AGG - chr1_3:52974225-52974244 Msa0124990:intron 40.0%
!! GGGTTTACTTTGCCACTTTA+GGG - chr1_3:52974226-52974245 Msa0124990:intron 40.0%
!!! GCTTCTTTTGCTGTTTAGGA+AGG - chr1_3:52974494-52974513 Msa0124990:intron 40.0%
!!! TGGGAGATACGAGTTTTAAG+AGG + chr1_3:52974904-52974923 None:intergenic 40.0%
CATCTATTCAGCCCATCTAA+GGG - chr1_3:52975029-52975048 Msa0124990:CDS 40.0%
ATCTATTCAGCCCATCTAAG+GGG - chr1_3:52975030-52975049 Msa0124990:CDS 40.0%
TCCCTAAGTTCAGATTCTTC+AGG + chr1_3:52975179-52975198 None:intergenic 40.0%
! AGTCAGCAAAAGTTGATCCA+AGG - chr1_3:52975394-52975413 Msa0124990:intron 40.0%
GTGAATGTTGGGAGTAAGAT+TGG + chr1_3:52975421-52975440 None:intergenic 40.0%
ACTCCCAACATTCACCAAAA+AGG - chr1_3:52975426-52975445 Msa0124990:intron 40.0%
!! CAGCCTTTTTGGTGAATGTT+GGG + chr1_3:52975432-52975451 None:intergenic 40.0%
!! TCAGCCTTTTTGGTGAATGT+TGG + chr1_3:52975433-52975452 None:intergenic 40.0%
! ATCGACAAAGTATCAAGGCT+TGG + chr1_3:52975717-52975736 None:intergenic 40.0%
AAATAAGCACGGGATTGAGA+AGG + chr1_3:52975791-52975810 None:intergenic 40.0%
TAGCTGAGAGAAAACAGAGT+TGG - chr1_3:52976194-52976213 Msa0124990:intron 40.0%
AGCTGAGAGAAAACAGAGTT+GGG - chr1_3:52976195-52976214 Msa0124990:intron 40.0%
! ACATTAATGTCAATGGCGGA+AGG - chr1_3:52976417-52976436 Msa0124990:intron 40.0%
TGCAGTAGTTCATTCCTATG+AGG - chr1_3:52976749-52976768 Msa0124990:intron 40.0%
TCATTCCTATGAGGACAAAG+TGG - chr1_3:52976758-52976777 Msa0124990:intron 40.0%
TATTGCATAGGTTCCTCCTA+TGG - chr1_3:52976901-52976920 Msa0124990:intron 40.0%
ATTGCATAGGTTCCTCCTAT+GGG - chr1_3:52976902-52976921 Msa0124990:intron 40.0%
GTTGGATAGAACAATCCCAT+AGG + chr1_3:52976920-52976939 None:intergenic 40.0%
TTGTTCACAAACATGGTCAC+AGG + chr1_3:52977019-52977038 None:intergenic 40.0%
CATGGTCATTAAACCTAGCA+AGG + chr1_3:52977071-52977090 None:intergenic 40.0%
TGCTAGGTTTAATGACCATG+AGG - chr1_3:52977071-52977090 Msa0124990:intron 40.0%
!! GGCAAATTGATTTTACCCGA+AGG - chr1_3:52977112-52977131 Msa0124990:CDS 40.0%
TTCGGCTTAGTTGAAAAAGC+TGG + chr1_3:52977201-52977220 None:intergenic 40.0%
!! TCAAGCCTTGTTTAGCTCTT+TGG - chr1_3:52977320-52977339 Msa0124990:intron 40.0%
TAGTTCCTGCAGTTGAAGAA+AGG - chr1_3:52977517-52977536 Msa0124990:intron 40.0%
ACAAACCTTTCTTCAACTGC+AGG + chr1_3:52977525-52977544 None:intergenic 40.0%
! GTTTCAATTTCCATTGGCCT+TGG - chr1_3:52977543-52977562 Msa0124990:intron 40.0%
AATGCTAGGCAAATCTACCA+AGG + chr1_3:52977563-52977582 None:intergenic 40.0%
TGAAGCAATTGATACAGTGG+AGG - chr1_3:52977676-52977695 Msa0124990:intron 40.0%
TCCAACATTTGTGTCATGGA+AGG - chr1_3:52977845-52977864 Msa0124990:intron 40.0%
CCAACATTTGTGTCATGGAA+GGG - chr1_3:52977846-52977865 Msa0124990:intron 40.0%
! TTGGAGTACTTGATGTAGGT+AGG - chr1_3:52978000-52978019 Msa0124990:intron 40.0%
! TGGAGTACTTGATGTAGGTA+GGG - chr1_3:52978001-52978020 Msa0124990:intron 40.0%
GTAGGGATGCATGGATAAAT+CGG - chr1_3:52978018-52978037 Msa0124990:intron 40.0%
TAGGGATGCATGGATAAATC+GGG - chr1_3:52978019-52978038 Msa0124990:intron 40.0%
ATTCAAAGTGGGATTCACGT+TGG - chr1_3:52978050-52978069 Msa0124990:intron 40.0%
GGATTTCCTGCTGTTACAGT+AGG - chr1_3:52970041-52970060 Msa0124990:intron 45.0%
! GTGAAGGAAGCGCAGATTTA+AGG + chr1_3:52970464-52970483 None:intergenic 45.0%
!!! TGGTTTTAGTCCCTGAGATC+AGG - chr1_3:52970841-52970860 Msa0124990:intron 45.0%
! GCCATGGGGCGTAATTTTAT+TGG - chr1_3:52971114-52971133 Msa0124990:CDS 45.0%
ATTGGACCATGTATGGCATG+AGG - chr1_3:52971132-52971151 Msa0124990:intron 45.0%
TTGGACCATGTATGGCATGA+GGG - chr1_3:52971133-52971152 Msa0124990:intron 45.0%
TTAGTCCCTCATGCCATACA+TGG + chr1_3:52971141-52971160 None:intergenic 45.0%
CAACTGCACAGCATATGGAA+AGG - chr1_3:52971382-52971401 Msa0124990:intron 45.0%
CTTACGAGGGAAAGAGTTAC+TGG + chr1_3:52971557-52971576 None:intergenic 45.0%
CAGTAACTCTTTCCCTCGTA+AGG - chr1_3:52971555-52971574 Msa0124990:intron 45.0%
!! CACTTTAGCGGTTTCAGGTT+TGG + chr1_3:52971898-52971917 None:intergenic 45.0%
GTTGCTCTTGAGAGTGAAAG+TGG + chr1_3:52972050-52972069 None:intergenic 45.0%
! CTGATGGACAAAATCCACAC+AGG - chr1_3:52972225-52972244 Msa0124990:intron 45.0%
AAGGGTGAATCTTTCCTGTG+TGG + chr1_3:52972242-52972261 None:intergenic 45.0%
GGAAAGATTCACCCTTCACT+TGG - chr1_3:52972246-52972265 Msa0124990:intron 45.0%
GTGTTCTTCAGTTCCATCTG+TGG - chr1_3:52972364-52972383 Msa0124990:intron 45.0%
TTCAGTTCCATCTGTGGCTT+TGG - chr1_3:52972370-52972389 Msa0124990:intron 45.0%
TCAGTTCCATCTGTGGCTTT+GGG - chr1_3:52972371-52972390 Msa0124990:intron 45.0%
AACATACCCAAAGCCACAGA+TGG + chr1_3:52972380-52972399 None:intergenic 45.0%
ATGGTCTGACAAGTTGCTGA+AGG - chr1_3:52972582-52972601 Msa0124990:intron 45.0%
GAGTCTTTGGACCCAAAAGA+AGG - chr1_3:52972800-52972819 Msa0124990:intron 45.0%
CAGAAAGTTCATTTGTGGCG+AGG - chr1_3:52972862-52972881 Msa0124990:intron 45.0%
TTCAAATGTCCTCTGCGGAT+TGG + chr1_3:52972932-52972951 None:intergenic 45.0%
GGTTTAGTTGCTTGAGCCAT+TGG - chr1_3:52973287-52973306 Msa0124990:intron 45.0%
!! GGCTATTTTGCAGGTGTTTG+AGG - chr1_3:52973491-52973510 Msa0124990:intron 45.0%
GTACTGGAAGAACTCTGCTT+TGG - chr1_3:52973775-52973794 Msa0124990:intron 45.0%
AGCAAATAGAAGGCCATACC+TGG + chr1_3:52973816-52973835 None:intergenic 45.0%
! ATGGACTGTCAAGCATACAG+TGG + chr1_3:52973891-52973910 None:intergenic 45.0%
!! TTATCAGGAAGGACTTGCTG+CGG - chr1_3:52973924-52973943 Msa0124990:intron 45.0%
!! CTTGCTGCGGTTTTTGGAAA+TGG - chr1_3:52973937-52973956 Msa0124990:intron 45.0%
TTGCTACTGACATGGTAGGT+AGG - chr1_3:52974156-52974175 Msa0124990:intron 45.0%
! AACTCTAACTTTTGGCGGTG+AGG - chr1_3:52974541-52974560 Msa0124990:intron 45.0%
!! CCTTAGATGGGCTGAATAGA+TGG + chr1_3:52975031-52975050 None:intergenic 45.0%
CCATCTATTCAGCCCATCTA+AGG - chr1_3:52975028-52975047 Msa0124990:CDS 45.0%
!! CTTTTGCTGACTGCCTATGA+TGG + chr1_3:52975386-52975405 None:intergenic 45.0%
! TTGGGAGTAAGATTGGTCCT+TGG + chr1_3:52975414-52975433 None:intergenic 45.0%
TTTATGTGTGCTACGTGTGG+TGG + chr1_3:52975515-52975534 None:intergenic 45.0%
! AGCTTTATGTGTGCTACGTG+TGG + chr1_3:52975518-52975537 None:intergenic 45.0%
! TAGGTCTTTTCCGAACGCTA+GGG + chr1_3:52975619-52975638 None:intergenic 45.0%
! TTAGGTCTTTTCCGAACGCT+AGG + chr1_3:52975620-52975639 None:intergenic 45.0%
! GGCTCATCGACAAAGTATCA+AGG + chr1_3:52975722-52975741 None:intergenic 45.0%
ATCTGTTCGAATTTGTGGCC+AGG + chr1_3:52976032-52976051 None:intergenic 45.0%
AAACATGCCATAGTGGCCAA+TGG - chr1_3:52976457-52976476 Msa0124990:CDS 45.0%
CGCTATGGCCAATTTGTGAA+GGG + chr1_3:52976501-52976520 None:intergenic 45.0%
CCTTCACAAATTGGCCATAG+CGG - chr1_3:52976499-52976518 Msa0124990:intron 45.0%
! AGTCTTGTCTTGTGAGATCC+TGG + chr1_3:52976786-52976805 None:intergenic 45.0%
GGATAGAACAATCCCATAGG+AGG + chr1_3:52976917-52976936 None:intergenic 45.0%
GCTGGATAACTTTCCCACAT+GGG + chr1_3:52977183-52977202 None:intergenic 45.0%
AGCTGGATAACTTTCCCACA+TGG + chr1_3:52977184-52977203 None:intergenic 45.0%
!! AGAAAATCTTGGCCTTGCAG+AGG - chr1_3:52977227-52977246 Msa0124990:intron 45.0%
!! AGTTGGTAATAGCCTCTGCA+AGG + chr1_3:52977242-52977261 None:intergenic 45.0%
CCCTTCCATGACACAAATGT+TGG + chr1_3:52977849-52977868 None:intergenic 45.0%
ACATTTGTGTCATGGAAGGG+CGG - chr1_3:52977849-52977868 Msa0124990:intron 45.0%
TTGATGTAGGTAGGGATGCA+TGG - chr1_3:52978009-52978028 Msa0124990:intron 45.0%
CATGGATAAATCGGGAAGAC+TGG - chr1_3:52978027-52978046 Msa0124990:intron 45.0%
GGGAAGACTGGATTCAAAGT+GGG - chr1_3:52978039-52978058 Msa0124990:intron 45.0%
!! TTATATTATTAGTATTTAAT+AGG + chr1_3:52969557-52969576 None:intergenic 5.0%
!! TTTAAAAATAAAATATAAAG+AGG - chr1_3:52969873-52969892 Msa0124990:intron 5.0%
!!! TGGTTTTAGTCCCTGAGACC+AGG - chr1_3:52970934-52970953 Msa0124990:CDS 50.0%
CGAGGGAAAGAGTTACTGGA+AGG + chr1_3:52971553-52971572 None:intergenic 50.0%
TTATGTCGTCCAATCCGCAG+AGG - chr1_3:52972920-52972939 Msa0124990:intron 50.0%
ACAACACTATCCCATGCAGC+AGG - chr1_3:52972958-52972977 Msa0124990:intron 50.0%
GTGACATGTACCTGCTGCAT+GGG + chr1_3:52972971-52972990 None:intergenic 50.0%
AGTGACATGTACCTGCTGCA+TGG + chr1_3:52972972-52972991 None:intergenic 50.0%
!!! GAAGGACTTGCTGCGGTTTT+TGG - chr1_3:52973931-52973950 Msa0124990:intron 50.0%
TGGGCTGAATAGATGGCTCA+GGG + chr1_3:52975024-52975043 None:intergenic 50.0%
! ATGGGCTGAATAGATGGCTC+AGG + chr1_3:52975025-52975044 None:intergenic 50.0%
CTAGTCTGCACCCCTTAGAT+GGG + chr1_3:52975043-52975062 None:intergenic 50.0%
ACTCTTGTAGCCCTAGCGTT+CGG - chr1_3:52975606-52975625 Msa0124990:CDS 50.0%
CACAAAGACATCACCAGACC+TGG - chr1_3:52976011-52976030 Msa0124990:intron 50.0%
TTCGAATTTGTGGCCAGGTC+TGG + chr1_3:52976027-52976046 None:intergenic 50.0%
GTGGGCATCCCTTCACAAAT+TGG - chr1_3:52976490-52976509 Msa0124990:CDS 50.0%
CCGCTATGGCCAATTTGTGA+AGG + chr1_3:52976502-52976521 None:intergenic 50.0%
TGCACAATCGACAACCGCTA+TGG + chr1_3:52976516-52976535 None:intergenic 50.0%
TGGCACCACTTTGTCCTCAT+AGG + chr1_3:52976766-52976785 None:intergenic 50.0%
TATGAGGACAAAGTGGTGCC+AGG - chr1_3:52976765-52976784 Msa0124990:intron 50.0%
ATGTGTATCCTCCTCCACCA+CGG - chr1_3:52976954-52976973 Msa0124990:intron 50.0%
GAATGCACTAACCAAGTCCG+TGG + chr1_3:52976974-52976993 None:intergenic 50.0%
TGTCGGACATGTCAGACCTT+CGG + chr1_3:52977131-52977150 None:intergenic 50.0%
TTAATGGAGGGATGCCCATG+TGG - chr1_3:52977166-52977185 Msa0124990:CDS 50.0%
TAATGGAGGGATGCCCATGT+GGG - chr1_3:52977167-52977186 Msa0124990:CDS 50.0%
ACCAACTGCATTCTCTCAGC+TGG - chr1_3:52977255-52977274 Msa0124990:intron 50.0%
ACCAGCTGAGAGAATGCAGT+TGG + chr1_3:52977259-52977278 None:intergenic 50.0%
GGCAAATCTACCAAGGCCAA+TGG + chr1_3:52977556-52977575 None:intergenic 50.0%
CATTTGTGTCATGGAAGGGC+GGG - chr1_3:52977850-52977869 Msa0124990:intron 50.0%
ATTTGTGTCATGGAAGGGCG+GGG - chr1_3:52977851-52977870 Msa0124990:intron 50.0%
CGGGAAGACTGGATTCAAAG+TGG - chr1_3:52978038-52978057 Msa0124990:intron 50.0%
CAGCACCCTACTGTAACAGC+AGG + chr1_3:52970050-52970069 None:intergenic 55.0%
GCGTCAGCTTATTGGGCCAT+GGG - chr1_3:52971099-52971118 Msa0124990:CDS 55.0%
CGTCAGCTTATTGGGCCATG+GGG - chr1_3:52971100-52971119 Msa0124990:CDS 55.0%
! ACTCTGCTTTGGCTCAGCAG+TGG - chr1_3:52973786-52973805 Msa0124990:intron 55.0%
! GCTAGTCTGCACCCCTTAGA+TGG + chr1_3:52975044-52975063 None:intergenic 55.0%
TGTGTGCTACGTGTGGTGGT+TGG + chr1_3:52975511-52975530 None:intergenic 55.0%
!! GGAAGCACCATTGGCCACTA+TGG + chr1_3:52976467-52976486 None:intergenic 55.0%
TTGTGAAGGGATGCCCACCA+CGG + chr1_3:52976488-52976507 None:intergenic 55.0%
GGTGGAGGAGGATACACATC+AGG + chr1_3:52976953-52976972 None:intergenic 55.0%
ACTAACCAAGTCCGTGGTGG+AGG + chr1_3:52976968-52976987 None:intergenic 55.0%
TGCACTAACCAAGTCCGTGG+TGG + chr1_3:52976971-52976990 None:intergenic 55.0%
CCTAGCAAGGGAAACGACCA+GGG + chr1_3:52977058-52977077 None:intergenic 55.0%
ACCTAGCAAGGGAAACGACC+AGG + chr1_3:52977059-52977078 None:intergenic 55.0%
GTCGGACATGTCAGACCTTC+GGG + chr1_3:52977130-52977149 None:intergenic 55.0%
AGTCCCGGGCGTCAGCTTAT+TGG - chr1_3:52971091-52971110 Msa0124990:CDS 60.0%
GTCCCGGGCGTCAGCTTATT+GGG - chr1_3:52971092-52971111 Msa0124990:CDS 60.0%
TGGCCCAATAAGCTGACGCC+CGG + chr1_3:52971098-52971117 None:intergenic 60.0%
GGCGTCAGCTTATTGGGCCA+TGG - chr1_3:52971098-52971117 Msa0124990:CDS 60.0%
CAGCAGTGGTGCACCAGGTA+TGG - chr1_3:52973800-52973819 Msa0124990:intron 60.0%
AGTGGCCAATGGTGCTTCCG+TGG - chr1_3:52976468-52976487 Msa0124990:CDS 60.0%
GCCAATGGTGCTTCCGTGGT+GGG - chr1_3:52976472-52976491 Msa0124990:CDS 60.0%
ATCCTCCTCCACCACGGACT+TGG - chr1_3:52976960-52976979 Msa0124990:intron 60.0%
! AACCAAGTCCGTGGTGGAGG+AGG + chr1_3:52976965-52976984 None:intergenic 60.0%
CCCTGGTCGTTTCCCTTGCT+AGG - chr1_3:52977055-52977074 Msa0124990:intron 60.0%
! TCTGGAATAGACTGGCGGCG+TGG - chr1_3:52977479-52977498 Msa0124990:intron 60.0%
GGCCCAATAAGCTGACGCCC+GGG + chr1_3:52971097-52971116 None:intergenic 65.0%
TGGCTCAGCAGTGGTGCACC+AGG - chr1_3:52973795-52973814 Msa0124990:intron 65.0%
GGCCAATGGTGCTTCCGTGG+TGG - chr1_3:52976471-52976490 Msa0124990:CDS 65.0%
!! GCCCACCACGGAAGCACCAT+TGG + chr1_3:52976476-52976495 None:intergenic 65.0%
!! GGCGGCGTGGCTCTGACAAA+TGG - chr1_3:52977492-52977511 Msa0124990:intron 65.0%
TGTGTCATGGAAGGGCGGGG+CGG - chr1_3:52977854-52977873 Msa0124990:intron 65.0%
GCACAGATGGGGCGCGCTGA+TGG - chr1_3:52972209-52972228 Msa0124990:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52969404 52978468 52969404 ID=Msa0124990;Name=Msa0124990
chr1_3 mRNA 52969404 52978468 52969404 ID=Msa0124990-mRNA-1;Parent=Msa0124990;Name=Msa0124990-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.94|0.95|0.95|1|1|20|329|599
chr1_3 exon 52969404 52969876 52969404 ID=Msa0124990-mRNA-1:exon:16314;Parent=Msa0124990-mRNA-1
chr1_3 exon 52969997 52970047 52969997 ID=Msa0124990-mRNA-1:exon:16313;Parent=Msa0124990-mRNA-1
chr1_3 exon 52970175 52970220 52970175 ID=Msa0124990-mRNA-1:exon:16312;Parent=Msa0124990-mRNA-1
chr1_3 exon 52970334 52970383 52970334 ID=Msa0124990-mRNA-1:exon:16311;Parent=Msa0124990-mRNA-1
chr1_3 exon 52970471 52970514 52970471 ID=Msa0124990-mRNA-1:exon:16310;Parent=Msa0124990-mRNA-1
chr1_3 exon 52970596 52970795 52970596 ID=Msa0124990-mRNA-1:exon:16309;Parent=Msa0124990-mRNA-1
chr1_3 exon 52970891 52970961 52970891 ID=Msa0124990-mRNA-1:exon:16308;Parent=Msa0124990-mRNA-1
chr1_3 exon 52971054 52971143 52971054 ID=Msa0124990-mRNA-1:exon:16307;Parent=Msa0124990-mRNA-1
chr1_3 exon 52971755 52971886 52971755 ID=Msa0124990-mRNA-1:exon:16306;Parent=Msa0124990-mRNA-1
chr1_3 exon 52973310 52973360 52973310 ID=Msa0124990-mRNA-1:exon:16305;Parent=Msa0124990-mRNA-1
chr1_3 exon 52973852 52973941 52973852 ID=Msa0124990-mRNA-1:exon:16304;Parent=Msa0124990-mRNA-1
chr1_3 exon 52974056 52974120 52974056 ID=Msa0124990-mRNA-1:exon:16303;Parent=Msa0124990-mRNA-1
chr1_3 exon 52974248 52974368 52974248 ID=Msa0124990-mRNA-1:exon:16302;Parent=Msa0124990-mRNA-1
chr1_3 exon 52974893 52975098 52974893 ID=Msa0124990-mRNA-1:exon:16301;Parent=Msa0124990-mRNA-1
chr1_3 exon 52975555 52975657 52975555 ID=Msa0124990-mRNA-1:exon:16300;Parent=Msa0124990-mRNA-1
chr1_3 exon 52976296 52976361 52976296 ID=Msa0124990-mRNA-1:exon:16299;Parent=Msa0124990-mRNA-1
chr1_3 exon 52976450 52976509 52976450 ID=Msa0124990-mRNA-1:exon:16298;Parent=Msa0124990-mRNA-1
chr1_3 exon 52977103 52977212 52977103 ID=Msa0124990-mRNA-1:exon:16297;Parent=Msa0124990-mRNA-1
chr1_3 exon 52977344 52977416 52977344 ID=Msa0124990-mRNA-1:exon:16296;Parent=Msa0124990-mRNA-1
chr1_3 exon 52978442 52978468 52978442 ID=Msa0124990-mRNA-1:exon:16295;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52978442 52978468 52978442 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52977344 52977416 52977344 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52977103 52977212 52977103 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52976450 52976509 52976450 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52976296 52976361 52976296 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52975555 52975657 52975555 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52974893 52975098 52974893 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52974248 52974368 52974248 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52974056 52974120 52974056 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52973852 52973941 52973852 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52973310 52973360 52973310 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52971755 52971886 52971755 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52971054 52971143 52971054 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52970891 52970961 52970891 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52970596 52970795 52970596 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52970471 52970514 52970471 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52970334 52970383 52970334 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52970175 52970220 52970175 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52969997 52970047 52969997 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 CDS 52969733 52969876 52969733 ID=Msa0124990-mRNA-1:cds;Parent=Msa0124990-mRNA-1
chr1_3 three_prime_UTR 52969404 52969732 52969404 ID=Msa0124990-mRNA-1:three_prime_utr;Parent=Msa0124990-mRNA-1
Gene Sequence

>Msa0124990

ATGGCTTCTAAAGTTTCGACGTTCAGGGATTACCTTAAATCTGCGCTTCCTTCACAAGTTATGTCAGAACGTGGTTCCAATCTCGTTGTAATCAACCCAGGTTCTGCAAATATTAGAATTGGATTGGCTTCACAAGATACCCCTTATAATATCCCTCATTGCATTGCTCATTATACCAAACAAGTTCCTAAGAAGAATGTTCAAGATCAGATGCTCAATAGTCAAGTTACAACTGCACAGCATATGGAAAGGGAAAAGGCTTATGATGTTATTGCATCACTGTTGAAGATACCGTTTCTGGATGAAGAACCTTCCAGTAACTCTTTCCCTCGTAAGATGGGGCGCGCTGATGGACAAAATCCACACAGGAAAGATTCACCCTTCACTTGGACTAATGTTTACGAGGAGGTCATTAGTTCGTCTTCAGTTTCAGCATTAGATACTGCGAGTAAAGATGAGACTAGTGAGTCTTTGGACCCAAAAGAAGGTACAGATTTGAAGGAAATTGGTGCGAGCAATCAAAAGTTCAGAAAGTTCATTTGTGGCGAGGAAGCATTAAGAATATCCCCCACTGAACCATATTGTTTATGTCGTCCAATCCGCAGAGGACATTTGAATATTTCACAACACTATCCCATGCAGCAGGTGTTTGAGGATCTACGTTCTATTTGGGACTGGATTTTAATAGAGAAACTGCATATTCCTCGCAATGAAAGAAACATGTACTCAGCTATTCTTGTGTTGCCAGAAACATTTGATAATCGTGAAATAAAGGAAATTCTATCTGTAGTACTGGAAGAACTCTGCTTTGGCTCAGCAGTGGTGCACCAGGAAGGACTTGCTGCGGTTTTTGGAAATGGATTATCAACAGCTTGTGTAGTGAATATTGGTGCTCAGGTGACATCAATTATATGCATAGAGGAAGGAGCTACTCTGCCTTCAACTGCAAAAACTCTAACTTTTGGCGGTGAGGATATATCAAGGAGCCTTCTCTATACACAAAGACATCACCAGACCTGGCCACAAATTCGAACAGATATGTTGACAAAGCCAATCGATCTGTTAATGTTAAATCAACTCAAAGAGTCATATTGTGAAATCAGAGAGGGGCAACTTGATGCTGTTGCAGTAGTTCATTCCTATGAGGACAAAGTGGTGCCAGGATCTCACAAGACAAGACTTACTGCTCTTAATGTTCCTCCTATGGGATTGTTCTATCCAACGTTTTTTGTTCCTGATGTGTATCCTCCTCCACCACGGACTTGGTTTAATGACCATGAGGATATGCTAGAAGATACATGGCAAATTGATTTTACCCGAAGGTCTGACATGTCCGACACTTTCTATCACAATGTTAATGGAGGGATGCCCATGTGGGAAAGTTATCCAGCTTTTTCAACTAAGCCGAAAAAAGAAGAAAATCTTGGCCTTGCAGAGGCTATTACCAACTGCATTCTCTCAGCTGGTCGCATAGACATGCAAAGAAAATTATTTTGTAGCATACAATTGACTGGCGGCGTGGCTCTGACAAATGGTTTAGTTCCTGCAGTTGAAGAAAGAGTTTTACATGCTATTCCTCCAAATGAAGCAATTGATACAGTGGAGGTTATACAATCAAGGGCAAATCCAACATTTGTGTCATGGAAGGGCGGGGCGATTCTTGGAGTACTTGATGTAGGTAGGGATGCATGGATAAATCGGGAAGACTGGATTCAAAGTGGGATTCACGTTGGAAGTAACAGAAAATACAAGGATTCTTATTATCTTCAAGCTCAAGCTATGTGTTACATGAATTCTTGA

Protein sequence

>Msa0124990

MASKVSTFRDYLKSALPSQVMSERGSNLVVINPGSANIRIGLASQDTPYNIPHCIAHYTKQVPKKNVQDQMLNSQVTTAQHMEREKAYDVIASLLKIPFLDEEPSSNSFPRKMGRADGQNPHRKDSPFTWTNVYEEVISSSSVSALDTASKDETSESLDPKEGTDLKEIGASNQKFRKFICGEEALRISPTEPYCLCRPIRRGHLNISQHYPMQQVFEDLRSIWDWILIEKLHIPRNERNMYSAILVLPETFDNREIKEILSVVLEELCFGSAVVHQEGLAAVFGNGLSTACVVNIGAQVTSIICIEEGATLPSTAKTLTFGGEDISRSLLYTQRHHQTWPQIRTDMLTKPIDLLMLNQLKESYCEIREGQLDAVAVVHSYEDKVVPGSHKTRLTALNVPPMGLFYPTFFVPDVYPPPPRTWFNDHEDMLEDTWQIDFTRRSDMSDTFYHNVNGGMPMWESYPAFSTKPKKEENLGLAEAITNCILSAGRIDMQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPNEAIDTVEVIQSRANPTFVSWKGGAILGVLDVGRDAWINREDWIQSGIHVGSNRKYKDSYYLQAQAMCYMNS*