Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174120 | G7ICX7 | 96.636 | 327 | 11 | 0 | 1 | 327 | 1 | 327 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034120 | Msa0174120 | 0.969569 | 2.575866e-130 | -8.615850e-47 |
| Msa0035340 | Msa0174120 | 0.807661 | 4.532591e-50 | -8.615850e-47 |
| Msa0065020 | Msa0174120 | 0.809053 | 2.287993e-50 | -8.615850e-47 |
| Msa0067330 | Msa0174120 | 0.811239 | 7.731414e-51 | -8.615850e-47 |
| Msa0158860 | Msa0174120 | 0.819605 | 1.064033e-52 | -8.615850e-47 |
| Msa0174120 | Msa0226310 | 0.822641 | 2.125099e-53 | -8.615850e-47 |
| Msa0174120 | Msa0304570 | 0.828572 | 8.343385e-55 | -8.615850e-47 |
| Msa0174120 | Msa0304680 | 0.839924 | 1.184463e-57 | -8.615850e-47 |
| Msa0174120 | Msa0453040 | 0.800927 | 1.145695e-48 | -8.615850e-47 |
| Msa0174120 | Msa0580370 | 0.812299 | 4.547082e-51 | -8.615850e-47 |
| Msa0174120 | Msa0658640 | 0.800532 | 1.379226e-48 | -8.615850e-47 |
| Msa0174120 | Msa0701220 | 0.815647 | 8.306906e-52 | -8.615850e-47 |
| Msa0174120 | Msa0795870 | 0.807613 | 4.639874e-50 | -8.615850e-47 |
| Msa0174120 | Msa0833650 | 0.810666 | 1.028923e-50 | -8.615850e-47 |
| Msa0174120 | Msa0894790 | 0.806275 | 8.901226e-50 | -8.615850e-47 |
| Msa0174120 | Msa1132840 | 0.812579 | 3.949984e-51 | -8.615850e-47 |
| Msa0174120 | Msa1174230 | 0.815812 | 7.631442e-52 | -8.615850e-47 |
| Msa0174120 | Msa1174780 | 0.820260 | 7.533151e-53 | -8.615850e-47 |
| Msa0174120 | Msa1460040 | 0.894717 | 1.896906e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174120 | MtrunA17_Chr1g0194641 | 96.636 | 327 | 11 | 0 | 1 | 327 | 1 | 327 | 0.0 | 647 |
| Msa0174120 | MtrunA17_Chr7g0221421 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 2.63e-30 | 118 |
| Msa0174120 | MtrunA17_Chr1g0160321 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 3.12e-28 | 112 |
| Msa0174120 | MtrunA17_Chr3g0113571 | 31.274 | 259 | 158 | 9 | 64 | 307 | 16 | 269 | 4.94e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174120 | AT2G16760.1 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 4.83e-142 | 404 |
| Msa0174120 | AT2G47370.1 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 3.38e-134 | 385 |
| Msa0174120 | AT2G47370.2 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 5.57e-108 | 316 |
| Msa0174120 | AT5G28660.1 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.26e-45 | 153 |
| Msa0174120 | AT2G01410.1 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 3.59e-24 | 102 |
Find 88 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAATCTGTTTAGGTTTA+TGG | 0.005941 | 1_4:+59757850 | None:intergenic |
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | 1_4:-59760736 | Msa0174120:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | 1_4:-59758250 | Msa0174120:CDS |
| AAACAGATTTGGTTAAAATT+TGG | 0.186616 | 1_4:-59757840 | Msa0174120:three_prime_UTR |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1_4:+59761126 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1_4:-59758121 | Msa0174120:CDS |
| CCTATTAAGGTTGTGGTTGC+TGG | 0.230469 | 1_4:-59758076 | Msa0174120:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1_4:-59758139 | Msa0174120:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | 1_4:+59760861 | None:intergenic |
| CCAGCAACCACAACCTTAAT+AGG | 0.262718 | 1_4:+59758076 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1_4:-59758040 | Msa0174120:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1_4:-59760830 | Msa0174120:CDS |
| GATAAACTCTGGTAGAAATT+TGG | 0.292992 | 1_4:-59757761 | Msa0174120:three_prime_UTR |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1_4:-59758064 | Msa0174120:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1_4:-59758333 | Msa0174120:CDS |
| AGAGTTATTGTCTCCTATTA+AGG | 0.305162 | 1_4:-59758089 | Msa0174120:CDS |
| GTTAAAATTTGGTGTTCCTT+TGG | 0.311459 | 1_4:-59757829 | Msa0174120:three_prime_UTR |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1_4:+59757930 | None:intergenic |
| TCCATAAACCTAAACAGATT+TGG | 0.320624 | 1_4:-59757851 | Msa0174120:three_prime_UTR |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1_4:-59758342 | Msa0174120:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1_4:-59758146 | Msa0174120:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1_4:-59757929 | Msa0174120:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | 1_4:-59760865 | Msa0174120:CDS |
| TCAGTTGTTGCAAAATTCTC+AGG | 0.366423 | 1_4:-59758004 | Msa0174120:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1_4:-59758334 | Msa0174120:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | 1_4:+59758236 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1_4:-59757987 | Msa0174120:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1_4:-59758325 | Msa0174120:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1_4:+59757924 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | 1_4:+59758214 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1_4:-59758324 | Msa0174120:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1_4:-59760837 | Msa0174120:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1_4:-59758036 | Msa0174120:CDS |
| ATTGTCTCCTATTAAGGTTG+TGG | 0.471777 | 1_4:-59758083 | Msa0174120:CDS |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | 1_4:+59760913 | None:intergenic |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | 1_4:-59760917 | Msa0174120:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1_4:-59760808 | Msa0174120:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1_4:-59758053 | Msa0174120:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | 1_4:-59760866 | Msa0174120:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1_4:+59758112 | None:intergenic |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1_4:-59758276 | Msa0174120:CDS |
| GGTATAATGCTCAATGTCAA+TGG | 0.522644 | 1_4:-59757692 | Msa0174120:three_prime_UTR |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | 1_4:-59758164 | Msa0174120:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1_4:-59757939 | Msa0174120:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1_4:-59758136 | Msa0174120:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1_4:+59761092 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1_4:-59758063 | Msa0174120:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | 1_4:-59760880 | Msa0174120:CDS |
| CAGTTGTTGCAAAATTCTCA+GGG | 0.533397 | 1_4:-59758003 | Msa0174120:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1_4:-59761013 | Msa0174120:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1_4:+59761086 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | 1_4:-59758229 | Msa0174120:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1_4:+59761051 | None:intergenic |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1_4:+59760830 | None:intergenic |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | 1_4:-59760890 | Msa0174120:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1_4:+59760737 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | 1_4:-59758259 | Msa0174120:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1_4:+59758393 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1_4:+59757980 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1_4:-59758263 | Msa0174120:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1_4:+59761113 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1_4:+59758049 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | 1_4:-59758170 | Msa0174120:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1_4:-59757962 | Msa0174120:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1_4:-59761102 | Msa0174120:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | 1_4:-59758169 | Msa0174120:CDS |
| TAATGCTCAATGTCAATGGT+AGG | 0.584520 | 1_4:-59757688 | Msa0174120:three_prime_UTR |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1_4:-59757961 | Msa0174120:CDS |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | 1_4:-59760849 | Msa0174120:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1_4:-59757935 | Msa0174120:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1_4:-59760947 | Msa0174120:CDS |
| CTATCTAGAAAGATAAACTC+TGG | 0.603512 | 1_4:-59757772 | Msa0174120:three_prime_UTR |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1_4:-59757897 | Msa0174120:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | 1_4:-59760884 | Msa0174120:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1_4:-59761039 | Msa0174120:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1_4:-59757966 | Msa0174120:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1_4:-59758332 | Msa0174120:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1_4:+59761087 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | 1_4:-59760864 | Msa0174120:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1_4:-59760843 | Msa0174120:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | 1_4:+59758215 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1_4:-59758382 | Msa0174120:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1_4:+59761103 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1_4:-59758135 | Msa0174120:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1_4:+59761118 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1_4:+59761050 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | 1_4:+59758218 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | 1_4:-59760765 | Msa0174120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATAAGTCTTTTTTTT+GGG | + | chr1_4:59758581-59758600 | None:intergenic | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+TGG | + | chr1_4:59758582-59758601 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1_4:59758670-59758689 | None:intergenic | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | + | chr1_4:59759765-59759784 | None:intergenic | 10.0% |
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1_4:59760304-59760323 | Msa0174120:intron | 10.0% |
| !! | TTTATATATATAAATTGGGA+CGG | + | chr1_4:59758264-59758283 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | - | chr1_4:59758277-59758296 | Msa0174120:CDS | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1_4:59758586-59758605 | Msa0174120:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | - | chr1_4:59758587-59758606 | Msa0174120:intron | 15.0% |
| !!! | TTGTAGATCTTTTTTTTTTT+TGG | - | chr1_4:59758908-59758927 | Msa0174120:intron | 15.0% |
| !!! | CTCATTTACTTTTTTTTTTT+TGG | + | chr1_4:59759129-59759148 | None:intergenic | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1_4:59759740-59759759 | None:intergenic | 15.0% |
| !!! | GTTGTTTTATATATATGAAA+AGG | - | chr1_4:59759764-59759783 | Msa0174120:intron | 15.0% |
| !! | AAGTTGTTTATAAATATGAT+TGG | + | chr1_4:59760033-59760052 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1_4:59760117-59760136 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1_4:59760117-59760136 | None:intergenic | 15.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1_4:59758217-59758236 | None:intergenic | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1_4:59758215-59758234 | Msa0174120:CDS | 20.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1_4:59758385-59758404 | None:intergenic | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1_4:59758386-59758405 | None:intergenic | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1_4:59758476-59758495 | Msa0174120:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1_4:59759286-59759305 | Msa0174120:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1_4:59759659-59759678 | Msa0174120:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1_4:59759678-59759697 | Msa0174120:intron | 20.0% |
| !! | TTGTTTATAAATATGATTGG+AGG | + | chr1_4:59760030-59760049 | None:intergenic | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1_4:59760115-59760134 | Msa0174120:intron | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1_4:59760115-59760134 | Msa0174120:intron | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1_4:59760317-59760336 | Msa0174120:intron | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1_4:59760489-59760508 | Msa0174120:intron | 20.0% |
| !!! | AATTTTAACCAAATCTGTTT+AGG | + | chr1_4:59760991-59761010 | None:intergenic | 20.0% |
| !!! | AAACAGATTTGGTTAAAATT+TGG | - | chr1_4:59760991-59761010 | Msa0174120:CDS | 20.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1_4:59757857-59757876 | None:intergenic | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1_4:59757858-59757877 | Msa0174120:three_prime_UTR | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1_4:59758122-59758141 | None:intergenic | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1_4:59758214-59758233 | Msa0174120:CDS | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | + | chr1_4:59758338-59758357 | None:intergenic | 25.0% |
| ! | TATCAACTGATCTAAGTTTA+CGG | + | chr1_4:59758515-59758534 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1_4:59758543-59758562 | Msa0174120:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1_4:59758548-59758567 | Msa0174120:intron | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1_4:59758735-59758754 | Msa0174120:intron | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1_4:59759059-59759078 | None:intergenic | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1_4:59759150-59759169 | Msa0174120:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1_4:59759154-59759173 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1_4:59759191-59759210 | None:intergenic | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1_4:59759555-59759574 | None:intergenic | 25.0% |
| !!! | TTGACTCAACTTTTTCATAT+GGG | + | chr1_4:59759961-59759980 | None:intergenic | 25.0% |
| !!! | ATTGACTCAACTTTTTCATA+TGG | + | chr1_4:59759962-59759981 | None:intergenic | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1_4:59760227-59760246 | Msa0174120:intron | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1_4:59760316-59760335 | Msa0174120:intron | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1_4:59760498-59760517 | Msa0174120:intron | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1_4:59760499-59760518 | Msa0174120:intron | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | + | chr1_4:59760619-59760638 | None:intergenic | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | + | chr1_4:59760620-59760639 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1_4:59760632-59760651 | Msa0174120:intron | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1_4:59760662-59760681 | Msa0174120:intron | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1_4:59760692-59760711 | Msa0174120:intron | 25.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1_4:59760695-59760714 | Msa0174120:intron | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1_4:59760696-59760715 | Msa0174120:intron | 25.0% |
| !!! | TTCCTTTGGTTTTTTATGTT+TGG | - | chr1_4:59761016-59761035 | Msa0174120:CDS | 25.0% |
| ! | AACCAAACATAAAAAACCAA+AGG | + | chr1_4:59761021-59761040 | None:intergenic | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1_4:59757854-59757873 | None:intergenic | 30.0% | |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1_4:59757861-59757880 | Msa0174120:three_prime_UTR | 30.0% |
| ATCAACTGATCTAAGTTTAC+GGG | + | chr1_4:59758514-59758533 | None:intergenic | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1_4:59758719-59758738 | Msa0174120:intron | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1_4:59758796-59758815 | Msa0174120:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1_4:59758845-59758864 | None:intergenic | 30.0% | |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1_4:59758845-59758864 | Msa0174120:intron | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | + | chr1_4:59759084-59759103 | None:intergenic | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1_4:59759304-59759323 | Msa0174120:intron | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1_4:59759453-59759472 | Msa0174120:intron | 30.0% |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1_4:59759573-59759592 | None:intergenic | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1_4:59759628-59759647 | None:intergenic | 30.0% |
| ! | AATGCAAAGTTGCTCTTTTT+AGG | - | chr1_4:59759897-59759916 | Msa0174120:intron | 30.0% |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1_4:59760191-59760210 | Msa0174120:intron | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1_4:59760192-59760211 | Msa0174120:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | + | chr1_4:59760235-59760254 | None:intergenic | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | - | chr1_4:59760235-59760254 | Msa0174120:intron | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1_4:59760497-59760516 | Msa0174120:intron | 30.0% | |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1_4:59760556-59760575 | None:intergenic | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1_4:59760569-59760588 | None:intergenic | 30.0% |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1_4:59760568-59760587 | Msa0174120:intron | 30.0% | |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1_4:59760661-59760680 | Msa0174120:intron | 30.0% |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1_4:59760685-59760704 | Msa0174120:intron | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1_4:59760722-59760741 | None:intergenic | 30.0% | |
| AGAGTTATTGTCTCCTATTA+AGG | - | chr1_4:59760742-59760761 | Msa0174120:CDS | 30.0% | |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1_4:59760931-59760950 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1_4:59760932-59760951 | None:intergenic | 30.0% |
| TCCATAAACCTAAACAGATT+TGG | - | chr1_4:59760980-59760999 | Msa0174120:CDS | 30.0% | |
| ! | ACCAAATCTGTTTAGGTTTA+TGG | + | chr1_4:59760984-59761003 | None:intergenic | 30.0% |
| !! | GTTAAAATTTGGTGTTCCTT+TGG | - | chr1_4:59761002-59761021 | Msa0174120:CDS | 30.0% |
| CTATCTAGAAAGATAAACTC+TGG | - | chr1_4:59761059-59761078 | Msa0174120:CDS | 30.0% | |
| GATAAACTCTGGTAGAAATT+TGG | - | chr1_4:59761070-59761089 | Msa0174120:CDS | 30.0% | |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1_4:59757817-59757836 | Msa0174120:three_prime_UTR | 35.0% |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1_4:59757818-59757837 | Msa0174120:three_prime_UTR | 35.0% | |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1_4:59757867-59757886 | Msa0174120:exon | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | - | chr1_4:59757941-59757960 | Msa0174120:CDS | 35.0% |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1_4:59758066-59758085 | Msa0174120:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1_4:59758097-59758116 | None:intergenic | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1_4:59758095-59758114 | Msa0174120:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | - | chr1_4:59758290-59758309 | Msa0174120:CDS | 35.0% | |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1_4:59758296-59758315 | Msa0174120:CDS | 35.0% |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1_4:59759013-59759032 | Msa0174120:intron | 35.0% | |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | + | chr1_4:59759079-59759098 | None:intergenic | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1_4:59759317-59759336 | Msa0174120:intron | 35.0% |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1_4:59759442-59759461 | None:intergenic | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1_4:59759528-59759547 | None:intergenic | 35.0% | |
| TTCTTTAACATGTGCCCTTA+GGG | - | chr1_4:59759920-59759939 | Msa0174120:intron | 35.0% | |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1_4:59760276-59760295 | Msa0174120:intron | 35.0% |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1_4:59760356-59760375 | Msa0174120:intron | 35.0% | |
| !! | TCCAATTTTTGACTCAATGC+AGG | - | chr1_4:59760404-59760423 | Msa0174120:intron | 35.0% |
| ACCTGCATTGAGTCAAAAAT+TGG | + | chr1_4:59760408-59760427 | None:intergenic | 35.0% | |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1_4:59760557-59760576 | None:intergenic | 35.0% |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1_4:59760555-59760574 | Msa0174120:intron | 35.0% | |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1_4:59760581-59760600 | Msa0174120:intron | 35.0% |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1_4:59760598-59760617 | None:intergenic | 35.0% | |
| ATTGTCTCCTATTAAGGTTG+TGG | - | chr1_4:59760748-59760767 | Msa0174120:CDS | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1_4:59760791-59760810 | Msa0174120:CDS | 35.0% | |
| TCAGTTGTTGCAAAATTCTC+AGG | - | chr1_4:59760827-59760846 | Msa0174120:CDS | 35.0% | |
| CAGTTGTTGCAAAATTCTCA+GGG | - | chr1_4:59760828-59760847 | Msa0174120:CDS | 35.0% | |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1_4:59760892-59760911 | Msa0174120:CDS | 35.0% |
| CAATTCCAACCATATGGTTT+AGG | + | chr1_4:59760904-59760923 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1_4:59760902-59760921 | Msa0174120:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1_4:59760934-59760953 | Msa0174120:CDS | 35.0% |
| TATACCGACAGAGAAAAACA+AGG | + | chr1_4:59761125-59761144 | None:intergenic | 35.0% | |
| GGTATAATGCTCAATGTCAA+TGG | - | chr1_4:59761139-59761158 | Msa0174120:CDS | 35.0% | |
| TAATGCTCAATGTCAATGGT+AGG | - | chr1_4:59761143-59761162 | Msa0174120:CDS | 35.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1_4:59757708-59757727 | None:intergenic | 40.0% |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1_4:59757747-59757766 | None:intergenic | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1_4:59757748-59757767 | None:intergenic | 40.0% | |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1_4:59757783-59757802 | None:intergenic | 40.0% |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1_4:59757784-59757803 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1_4:59757792-59757811 | Msa0174120:three_prime_UTR | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1_4:59757884-59757903 | Msa0174120:exon | 40.0% | |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | + | chr1_4:59757901-59757920 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | - | chr1_4:59757947-59757966 | Msa0174120:CDS | 40.0% |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1_4:59758023-59758042 | Msa0174120:CDS | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1_4:59758826-59758845 | Msa0174120:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1_4:59759246-59759265 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1_4:59759488-59759507 | None:intergenic | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1_4:59759489-59759508 | Msa0174120:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr1_4:59759789-59759808 | Msa0174120:intron | 40.0% |
| !! | ATGTTAACTTGTGCCCTCAA+GGG | - | chr1_4:59759790-59759809 | Msa0174120:intron | 40.0% |
| TCTTTAACATGTGCCCTTGA+GGG | + | chr1_4:59759806-59759825 | None:intergenic | 40.0% | |
| TTCTTTAACATGTGCCCTTG+AGG | + | chr1_4:59759807-59759826 | None:intergenic | 40.0% | |
| GTTCTTTAACATGTGCCCTT+AGG | - | chr1_4:59759919-59759938 | Msa0174120:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr1_4:59759937-59759956 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr1_4:59759938-59759957 | None:intergenic | 40.0% |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1_4:59760266-59760285 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1_4:59760263-59760282 | Msa0174120:intron | 40.0% |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1_4:59760506-59760525 | Msa0174120:intron | 40.0% | |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1_4:59760507-59760526 | Msa0174120:intron | 40.0% |
| GAATGGCACAAAACATTGGT+TGG | - | chr1_4:59760572-59760591 | Msa0174120:intron | 40.0% | |
| CTATTAAGAATCCATCTGGG+TGG | + | chr1_4:59760616-59760635 | None:intergenic | 40.0% | |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1_4:59760667-59760686 | Msa0174120:intron | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1_4:59760710-59760729 | Msa0174120:intron | 40.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1_4:59760778-59760797 | Msa0174120:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1_4:59760795-59760814 | Msa0174120:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1_4:59760854-59760873 | None:intergenic | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1_4:59760896-59760915 | Msa0174120:CDS | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1_4:59760910-59760929 | None:intergenic | 40.0% | |
| !!! | CAGTCCTTGTTTTTCTCTGT+CGG | - | chr1_4:59761118-59761137 | Msa0174120:CDS | 40.0% |
| GATGATTATGCCGATGGGTA+TGG | + | chr1_4:59757742-59757761 | None:intergenic | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | - | chr1_4:59757902-59757921 | Msa0174120:CDS | 45.0% | |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | + | chr1_4:59757906-59757925 | None:intergenic | 45.0% |
| CCGGAAAAAGAATCACCAGA+GGG | - | chr1_4:59757903-59757922 | Msa0174120:CDS | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | - | chr1_4:59757914-59757933 | Msa0174120:CDS | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | + | chr1_4:59757921-59757940 | None:intergenic | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1_4:59759027-59759046 | Msa0174120:intron | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1_4:59759233-59759252 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1_4:59759336-59759355 | Msa0174120:intron | 45.0% | |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1_4:59759348-59759367 | Msa0174120:intron | 45.0% |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1_4:59759432-59759451 | None:intergenic | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1_4:59759614-59759633 | Msa0174120:intron | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1_4:59760254-59760273 | None:intergenic | 45.0% | |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1_4:59760441-59760460 | None:intergenic | 45.0% | |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1_4:59760449-59760468 | Msa0174120:intron | 45.0% |
| GGAATTGTTTACCACCCAGA+TGG | - | chr1_4:59760602-59760621 | Msa0174120:intron | 45.0% | |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1_4:59760716-59760735 | Msa0174120:intron | 45.0% |
| CCAGCAACCACAACCTTAAT+AGG | + | chr1_4:59760758-59760777 | None:intergenic | 45.0% | |
| CCTATTAAGGTTGTGGTTGC+TGG | - | chr1_4:59760755-59760774 | Msa0174120:CDS | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1_4:59760768-59760787 | Msa0174120:CDS | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1_4:59760869-59760888 | Msa0174120:CDS | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1_4:59760870-59760889 | Msa0174120:CDS | 45.0% | |
| !!! | GTTTTTTATATATATAAATT+GGG | + | chr1_4:59758268-59758287 | None:intergenic | 5.0% |
| !!! | AGTTTTTTATATATATAAAT+TGG | + | chr1_4:59758269-59758288 | None:intergenic | 5.0% |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1_4:59758614-59758633 | Msa0174120:intron | 5.0% |
| !!! | ATAATATTTTGATTTTTAAA+AGG | + | chr1_4:59759870-59759889 | None:intergenic | 5.0% |
| CTCTCTCTCTCTCTCTCTCA+TGG | - | chr1_4:59757662-59757681 | Msa0174120:three_prime_UTR | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1_4:59757716-59757735 | None:intergenic | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1_4:59757721-59757740 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1_4:59757729-59757748 | Msa0174120:three_prime_UTR | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1_4:59757951-59757970 | Msa0174120:CDS | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1_4:59757994-59758013 | Msa0174120:CDS | 50.0% | |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1_4:59758004-59758023 | None:intergenic | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1_4:59759040-59759059 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1_4:59759226-59759245 | Msa0174120:intron | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1_4:59759227-59759246 | Msa0174120:intron | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1_4:59759234-59759253 | Msa0174120:intron | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1_4:59759343-59759362 | None:intergenic | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | - | chr1_4:59760248-59760267 | Msa0174120:intron | 50.0% |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1_4:59760767-59760786 | Msa0174120:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1_4:59760785-59760804 | None:intergenic | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1_4:59760844-59760863 | Msa0174120:CDS | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1_4:59760865-59760884 | Msa0174120:CDS | 50.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1_4:59757731-59757750 | None:intergenic | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | - | chr1_4:59757966-59757985 | Msa0174120:CDS | 55.0% | |
| CATCCCCAACGACGCATTTC+CGG | + | chr1_4:59757973-59757992 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | - | chr1_4:59757982-59758001 | Msa0174120:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1_4:59757988-59758007 | Msa0174120:CDS | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1_4:59758001-59758020 | Msa0174120:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | - | chr1_4:59757965-59757984 | Msa0174120:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | - | chr1_4:59757967-59757986 | Msa0174120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 59757646 | 59761207 | 59757646 | ID=Msa0174120;Name=Msa0174120 |
| chr1_4 | mRNA | 59757646 | 59761207 | 59757646 | ID=Msa0174120-mRNA-1;Parent=Msa0174120;Name=Msa0174120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=35|1|1|1|1|1|2|240|327 |
| chr1_4 | exon | 59757646 | 59758427 | 59757646 | ID=Msa0174120-mRNA-1:exon:18729;Parent=Msa0174120-mRNA-1 |
| chr1_4 | exon | 59760731 | 59761207 | 59760731 | ID=Msa0174120-mRNA-1:exon:18728;Parent=Msa0174120-mRNA-1 |
| chr1_4 | five_prime_UTR | 59761173 | 59761207 | 59761173 | ID=Msa0174120-mRNA-1:five_prime_utr;Parent=Msa0174120-mRNA-1 |
| chr1_4 | CDS | 59760731 | 59761172 | 59760731 | ID=Msa0174120-mRNA-1:cds;Parent=Msa0174120-mRNA-1 |
| chr1_4 | CDS | 59757886 | 59758427 | 59757886 | ID=Msa0174120-mRNA-1:cds;Parent=Msa0174120-mRNA-1 |
| chr1_4 | three_prime_UTR | 59757646 | 59757885 | 59757646 | ID=Msa0174120-mRNA-1:three_prime_utr;Parent=Msa0174120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
