AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701220 MtrunA17_Chr8g0379151 95.055 364 18 0 1 364 17 380 0.0 730
Msa0701220 MtrunA17_Chr2g0283741 46.575 365 180 8 2 357 1 359 1.11e-107 320
Msa0701220 MtrunA17_Chr2g0283901 50.145 345 161 8 18 357 18 356 2.08e-106 321
Msa0701220 MtrunA17_Chr3g0144281 41.292 356 181 14 14 357 9 348 9.70e-78 243
Msa0701220 MtrunA17_Chr4g0053311 39.678 373 185 12 6 363 1 348 1.37e-76 240
Msa0701220 MtrunA17_Chr3g0134231 41.484 364 186 13 10 357 10 362 1.77e-76 243
Msa0701220 MtrunA17_Chr3g0142071 42.500 320 166 9 49 359 48 358 1.21e-75 241
Msa0701220 MtrunA17_Chr4g0040851 39.945 363 193 14 1 356 15 359 5.34e-75 236
Msa0701220 MtrunA17_Chr3g0116551 40.730 356 186 13 15 359 6 347 3.93e-74 234
Msa0701220 MtrunA17_Chr1g0208261 42.308 338 171 13 32 357 71 396 2.57e-73 236
Msa0701220 MtrunA17_Chr2g0283751 45.055 273 138 7 9 274 11 278 2.16e-70 222
Msa0701220 MtrunA17_Chr2g0325121 41.401 314 162 11 51 357 39 337 4.70e-70 223
Msa0701220 MtrunA17_Chr4g0041481 40.063 317 164 11 49 355 38 338 1.14e-68 219
Msa0701220 MtrunA17_Chr1g0153011 37.875 367 193 11 2 357 1 343 1.20e-68 222
Msa0701220 MtrunA17_Chr4g0041521 40.379 317 163 11 49 355 38 338 4.81e-68 217
Msa0701220 MtrunA17_Chr4g0024411 38.994 318 179 8 45 355 32 341 5.36e-68 217
Msa0701220 MtrunA17_Chr4g0058081 39.665 358 187 15 14 359 6 346 1.67e-67 216
Msa0701220 MtrunA17_Chr7g0248391 40.575 313 166 9 49 356 40 337 3.93e-67 215
Msa0701220 MtrunA17_Chr5g0405751 38.318 321 179 9 44 355 32 342 6.15e-66 212
Msa0701220 MtrunA17_Chr4g0040881 36.957 322 187 8 41 355 31 343 6.86e-64 207
Msa0701220 MtrunA17_Chr4g0041061 37.304 319 184 8 44 355 34 343 7.24e-64 207
Msa0701220 MtrunA17_Chr4g0041471 36.512 367 182 14 9 356 7 341 1.11e-63 206
Msa0701220 MtrunA17_Chr4g0060251 37.695 321 179 10 45 355 34 343 2.28e-63 205
Msa0701220 MtrunA17_Chr2g0315491 35.457 361 186 11 11 355 10 339 2.02e-62 203
Msa0701220 MtrunA17_Chr7g0248811 39.423 312 170 11 49 355 37 334 2.46e-62 202
Msa0701220 MtrunA17_Chr4g0041081 36.760 321 183 9 44 355 34 343 1.29e-61 201
Msa0701220 MtrunA17_Chr2g0319991 37.963 324 178 12 46 356 30 343 2.46e-60 197
Msa0701220 MtrunA17_Chr1g0155781 35.202 321 174 12 51 352 51 356 2.84e-55 185
Msa0701220 MtrunA17_Chr1g0199131 32.888 374 211 11 6 352 2 362 5.25e-55 185
Msa0701220 MtrunA17_Chr4g0035551 33.155 374 204 13 3 352 1 352 1.06e-54 183
Msa0701220 MtrunA17_Chr2g0311381 35.826 321 168 12 51 348 36 341 4.05e-54 182
Msa0701220 MtrunA17_Chr2g0311471 36.760 321 167 10 54 354 39 343 8.31e-53 178
Msa0701220 MtrunA17_Chr0c27g0493921 31.492 362 226 8 3 356 1 348 4.37e-49 168
Msa0701220 MtrunA17_Chr4g0070441 32.938 337 210 7 3 331 1 329 2.98e-48 166
Msa0701220 MtrunA17_Chr2g0311391 32.564 390 192 16 14 355 4 370 9.68e-48 166
Msa0701220 MtrunA17_Chr2g0283671 42.342 222 118 6 139 356 12 227 3.16e-45 155
Msa0701220 MtrunA17_Chr4g0036731 31.232 349 190 11 14 352 8 316 3.37e-41 147
Msa0701220 MtrunA17_Chr4g0036281 33.010 309 164 10 51 352 48 320 2.33e-40 145
Msa0701220 MtrunA17_Chr1g0156161 38.009 221 126 6 139 354 47 261 2.50e-40 143
Msa0701220 MtrunA17_Chr4g0037291 30.791 354 189 12 14 352 49 361 3.31e-40 145
Msa0701220 MtrunA17_Chr1g0156771 48.077 104 51 2 139 239 53 156 1.20e-26 103
Msa0701220 MtrunA17_Chr2g0283661 26.496 351 173 11 8 355 2 270 2.80e-26 105
Msa0701220 MtrunA17_Chr7g0248421 40.288 139 80 2 166 301 58 196 5.69e-25 100
Msa0701220 MtrunA17_Chr2g0311091 36.424 151 80 5 54 191 37 184 3.57e-22 92.4
Msa0701220 MtrunA17_Chr7g0248371 44.954 109 50 6 250 356 31 131 2.95e-18 80.9
Msa0701220 MtrunA17_Chr7g0271031 26.033 242 139 9 141 352 147 378 3.19e-12 67.4
Msa0701220 MtrunA17_Chr8g0379671 30.709 127 79 4 182 306 23 142 6.43e-12 63.5
Msa0701220 MtrunA17_Chr7g0248661 44.444 81 38 4 277 356 2 76 8.34e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701220 AT5G43060.1 41.944 360 180 12 13 357 9 354 3.52e-82 258
Msa0701220 AT4G23520.1 39.516 372 197 13 2 363 3 356 1.02e-80 251
Msa0701220 AT4G35350.1 41.111 360 192 12 6 358 8 354 2.16e-79 247
Msa0701220 AT1G20850.1 44.543 339 166 13 29 358 30 355 1.70e-78 245
Msa0701220 AT1G09850.1 43.252 326 157 10 45 358 26 335 2.38e-78 247
Msa0701220 AT1G47128.1 40.331 362 192 12 9 357 3 353 1.50e-76 243
Msa0701220 AT4G11310.1 39.178 365 192 13 13 362 9 358 7.35e-75 236
Msa0701220 AT5G50260.1 41.341 358 183 14 13 359 4 345 2.82e-74 234
Msa0701220 AT4G11320.2 37.197 371 210 11 4 362 6 365 9.09e-73 231
Msa0701220 AT4G11320.1 37.197 371 210 11 4 362 6 365 9.09e-73 231
Msa0701220 AT4G36880.1 40.000 350 186 12 25 357 20 362 6.73e-72 229
Msa0701220 AT3G48340.1 38.315 368 189 12 11 362 4 349 1.49e-70 225
Msa0701220 AT3G19400.1 40.361 332 177 13 43 364 36 356 1.18e-69 223
Msa0701220 AT3G19390.1 37.940 369 201 16 2 361 1 350 9.50e-69 223
Msa0701220 AT1G06260.1 37.394 353 197 10 12 357 8 343 4.35e-67 215
Msa0701220 AT3G48350.1 37.883 359 194 15 11 357 3 344 1.30e-66 215
Msa0701220 AT1G29090.1 39.335 361 182 14 13 356 14 354 3.99e-66 213
Msa0701220 AT2G34080.1 36.517 356 205 12 10 356 1 344 6.82e-66 212
Msa0701220 AT3G43960.1 40.244 328 178 12 46 364 36 354 6.46e-65 211
Msa0701220 AT5G45890.1 35.598 368 200 14 1 355 1 344 1.12e-64 209
Msa0701220 AT1G29080.1 36.134 357 205 12 9 356 3 345 3.83e-64 208
Msa0701220 AT3G49340.1 35.942 345 198 11 22 356 9 340 1.72e-63 206
Msa0701220 AT2G27420.1 37.363 364 194 15 10 356 1 347 1.24e-60 199
Msa0701220 AT4G35350.2 40.070 287 152 11 6 282 8 284 8.03e-57 187
Msa0701220 AT1G29110.1 33.894 357 191 13 15 356 7 333 9.78e-56 186
Msa0701220 AT3G54940.2 35.758 330 181 9 51 362 51 367 1.67e-55 186
Msa0701220 AT4G39090.1 34.234 333 183 11 51 363 51 367 1.13e-53 181
Msa0701220 AT5G60360.1 35.256 312 182 8 51 356 59 356 1.33e-52 178
Msa0701220 AT5G60360.2 36.934 287 167 7 51 331 59 337 1.58e-51 175
Msa0701220 AT2G21430.1 35.974 303 164 11 51 333 48 340 2.23e-51 175
Msa0701220 AT5G60360.3 36.934 287 167 7 51 331 59 337 2.45e-51 175
Msa0701220 AT4G16190.1 31.551 374 205 14 13 352 6 362 1.02e-49 171
Msa0701220 AT3G48350.2 35.254 295 169 11 11 294 3 286 1.89e-48 166
Msa0701220 AT3G45310.1 33.333 312 188 9 51 356 59 356 5.33e-48 166
Msa0701220 AT3G45310.2 35.192 287 172 8 51 331 59 337 2.14e-47 164
Msa0701220 AT3G19400.2 40.496 242 131 8 46 279 39 275 2.30e-47 162
Msa0701220 AT3G54940.3 36.139 202 116 3 51 243 51 248 8.42e-36 132
Msa0701220 AT4G01610.1 28.692 237 129 11 141 342 103 334 2.90e-12 67.8

Find 107 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATTTGCAACAAATTT+TGG 0.101082 4_4:-72612899 None:intergenic
CAAAATTTGTTGCAAATTAT+TGG 0.108351 4_4:+72612900 Msa0701220:three_prime_UTR
CTCATTGATATACTTAAAAT+TGG 0.205591 4_4:-72610969 None:intergenic
TGTAGTGCTAGCATGGAATT+TGG 0.210591 4_4:+72612642 Msa0701220:three_prime_UTR
TATTGACAACCTTCTGGTTT+TGG 0.238326 4_4:+72611890 Msa0701220:CDS
CCTATCAGCACAAGAAATTA+TGG 0.278118 4_4:+72611592 Msa0701220:CDS
CGGTGAATGGTGAAGACTAT+TGG 0.304070 4_4:+72612386 Msa0701220:CDS
GTTATTGAAGATTGGCCTTA+TGG 0.314718 4_4:+72612472 Msa0701220:CDS
CTTAGAAAAGGGAAACTAAA+TGG 0.315033 4_4:-72612766 None:intergenic
TTTACTTTAATGCATTTGGC+TGG 0.318534 4_4:+72611651 Msa0701220:CDS
TTTGGCTGGGTTATTGAAAA+TGG 0.328155 4_4:+72611665 Msa0701220:CDS
GTTACCAATGTTTGATCTCT+TGG 0.334563 4_4:-72610704 None:intergenic
CCATAATTTCTTGTGCTGAT+AGG 0.338269 4_4:-72611592 None:intergenic
CGTGCTCCTTCTTCCACAAT+TGG 0.339247 4_4:-72610889 None:intergenic
ACAACCTCTTAGTGTGAGTT+TGG 0.347332 4_4:+72611950 Msa0701220:CDS
CATCTCTATCTTTGGTAAGT+AGG 0.351412 4_4:-72611077 None:intergenic
TGTTAGTATTGACAACCTTC+TGG 0.352494 4_4:+72611884 Msa0701220:CDS
GTAGTGCTAGCATGGAATTT+GGG 0.355855 4_4:+72612643 Msa0701220:three_prime_UTR
ACCTTCCCACTTCTGTAGAT+TGG 0.361626 4_4:+72611155 Msa0701220:CDS
AAGGAGCTGTGACTGAAGTT+AGG 0.364375 4_4:+72611185 Msa0701220:CDS
CATTGGGCATTCTCAGTCAC+TGG 0.368149 4_4:+72611524 Msa0701220:CDS
AATGTTTGATCTCTTGGTCT+TGG 0.369653 4_4:-72610698 None:intergenic
AAAGGAATGTTATTGAAGAT+TGG 0.377330 4_4:+72612464 Msa0701220:CDS
TTTAAATATCTCAAATCTCT+TGG 0.377666 4_4:-72610945 None:intergenic
TGACTAAAATAGGGAGTCTA+TGG 0.386085 4_4:+72612298 Msa0701220:intron
TCTCATAATATATATAATAA+TGG 0.390953 4_4:+72612717 Msa0701220:three_prime_UTR
TCTGTAGATTGGAGGGAAAA+AGG 0.392044 4_4:+72611166 Msa0701220:CDS
AAACTCATGGGGAAAAGATT+GGG 0.397399 4_4:+72612417 Msa0701220:CDS
AGTACTAGTACATACATAAA+GGG 0.400009 4_4:-72612691 None:intergenic
TAGTACTAGTACATACATAA+AGG 0.400483 4_4:-72612692 None:intergenic
TCCATGCTAGCACTACAATA+TGG 0.402696 4_4:-72612636 None:intergenic
GGAATCTGCATCTCTATCTT+TGG 0.403742 4_4:-72611085 None:intergenic
AAGGTTACTTGTTTATCAAA+AGG 0.408095 4_4:+72612446 Msa0701220:CDS
GGACTGTGACCCTGCTAGTA+AGG 0.414218 4_4:+72611613 Msa0701220:CDS
GGCAAATGAAAGACATGTAA+TGG 0.429471 4_4:-72610789 None:intergenic
TCAGTCACTGGGGCAATTGA+AGG 0.431508 4_4:+72611536 Msa0701220:CDS
TCAAGGAATGCAAATCTTGT+TGG 0.438289 4_4:+72612343 Msa0701220:CDS
AAAACTCATGGGGAAAAGAT+TGG 0.442756 4_4:+72612416 Msa0701220:CDS
AAATCTTACGACAATTTCCT+TGG 0.443422 4_4:-72611210 None:intergenic
TTCCCTCCAATCGGGACAAT+GGG 0.454262 4_4:+72611104 Msa0701220:CDS
ATCTTCAGCCATGTAGTGGT+TGG 0.459545 4_4:+72612543 Msa0701220:exon
GCTTAGAGAAACCGATAGAT+AGG 0.462516 4_4:-72612609 None:intergenic
TCTAATCGTGGGTTATGATT+CGG 0.463790 4_4:+72612366 Msa0701220:CDS
ACCGATAGATAGGTCTCAAA+AGG 0.478652 4_4:-72612599 None:intergenic
AGGAGCTGTGACTGAAGTTA+GGG 0.480944 4_4:+72611186 Msa0701220:CDS
TTACACCAGCATAGAATTGA+AGG 0.485435 4_4:-72611983 None:intergenic
AAGCTTCCCATTGTCCCGAT+TGG 0.485909 4_4:-72611110 None:intergenic
AGTGTGAGTTTGGATGCAAC+TGG 0.487456 4_4:+72611960 Msa0701220:CDS
AGATGCAGATTCCCTCCAAT+CGG 0.487597 4_4:+72611095 Msa0701220:CDS
CCTGCTAGTAAGGGTTGTGC+TGG 0.489644 4_4:+72611623 Msa0701220:CDS
CTTGAAGGAAAATGCAAACA+AGG 0.490268 4_4:+72611860 Msa0701220:intron
GCATCCAAACTCACACTAAG+AGG 0.491176 4_4:-72611954 None:intergenic
CCAGCACAACCCTTACTAGC+AGG 0.492421 4_4:-72611623 None:intergenic
TTACTTTAATGCATTTGGCT+GGG 0.503500 4_4:+72611652 Msa0701220:CDS
GGCTGGGTTATTGAAAATGG+TGG 0.510307 4_4:+72611668 Msa0701220:CDS
CTTCCCATTGTCCCGATTGG+AGG 0.510526 4_4:-72611107 None:intergenic
GCCATATTGTAGTGCTAGCA+TGG 0.511168 4_4:+72612635 Msa0701220:three_prime_UTR
ATTCCCTCCAATCGGGACAA+TGG 0.514126 4_4:+72611103 Msa0701220:CDS
ACTCTTCCAATTGTGGAAGA+AGG 0.517582 4_4:+72610883 Msa0701220:CDS
GGAAAAGATTGGGGAGAGAA+AGG 0.518533 4_4:+72612427 Msa0701220:CDS
GCTAGTAAGGGTTGTGCTGG+AGG 0.520226 4_4:+72611626 Msa0701220:CDS
ACTGGCCTTCAATTCTATGC+TGG 0.521431 4_4:+72611978 Msa0701220:CDS
TTCCCACTTCTGTAGATTGG+AGG 0.523180 4_4:+72611158 Msa0701220:CDS
TTCCCTCCAATCTACAGAAG+TGG 0.526210 4_4:-72611161 None:intergenic
TCCCTCCAATCTACAGAAGT+GGG 0.527833 4_4:-72611160 None:intergenic
AAAGACATGTAATGGAAATG+AGG 0.531576 4_4:-72610781 None:intergenic
TGTTTGAACTCTTCCAATTG+TGG 0.531957 4_4:+72610876 Msa0701220:CDS
CTTTATCTTCAGCCATGTAG+TGG 0.532318 4_4:+72612539 Msa0701220:CDS
TTGATTGCACATACACCATA+AGG 0.533070 4_4:-72612487 None:intergenic
GTGGGTTATGATTCGGTGAA+TGG 0.534697 4_4:+72612373 Msa0701220:CDS
TGCTCTAACCAACCACTACA+TGG 0.537247 4_4:-72612551 None:intergenic
GATGCAGATTCCCTCCAATC+GGG 0.537566 4_4:+72611096 Msa0701220:CDS
TTCCCATTGTCCCGATTGGA+GGG 0.544474 4_4:-72611106 None:intergenic
GCTGGGTTATTGAAAATGGT+GGG 0.551387 4_4:+72611669 Msa0701220:CDS
AATCTTGTTGGTCTAATCGT+GGG 0.553988 4_4:+72612355 Msa0701220:CDS
TCCCACTTCTGTAGATTGGA+GGG 0.556871 4_4:+72611159 Msa0701220:CDS
TTCAAACACTTCTTCATCAG+AGG 0.560590 4_4:-72610861 None:intergenic
AATTTCTAGCCATGGCAAGT+TGG 0.565364 4_4:+72610829 Msa0701220:CDS
GACTGTGACCCTGCTAGTAA+GGG 0.569928 4_4:+72611614 Msa0701220:CDS
ATTGGGCATTCTCAGTCACT+GGG 0.573858 4_4:+72611525 Msa0701220:CDS
AAATCTTGTTGGTCTAATCG+TGG 0.581439 4_4:+72612354 Msa0701220:CDS
CAGAATGAACTTTGTGATGT+GGG 0.582146 4_4:-72610747 None:intergenic
TAGTGCTAGCATGGAATTTG+GGG 0.591842 4_4:+72612644 Msa0701220:three_prime_UTR
GGACTAAACAAAATAGTCAC+GGG 0.593846 4_4:+72611557 Msa0701220:CDS
AAAACTTGTCCAACTTGCCA+TGG 0.594424 4_4:-72610838 None:intergenic
GAGTACTCAATTTCTAGCCA+TGG 0.600592 4_4:+72610821 Msa0701220:CDS
AATTGTGGAAGAAGGAGCAC+GGG 0.602772 4_4:+72610891 Msa0701220:CDS
CTAAAATAGGGAGTCTATGG+TGG 0.604269 4_4:+72612301 Msa0701220:intron
CAATTGTGGAAGAAGGAGCA+CGG 0.616767 4_4:+72610890 Msa0701220:CDS
ACAGAATGAACTTTGTGATG+TGG 0.621850 4_4:-72610748 None:intergenic
AGGACTAAACAAAATAGTCA+CGG 0.622654 4_4:+72611556 Msa0701220:CDS
GTGACTGAAGTTAGGGACCA+AGG 0.628455 4_4:+72611193 Msa0701220:CDS
AACTCATGGGGAAAAGATTG+GGG 0.629466 4_4:+72612418 Msa0701220:CDS
CATAATATATATAATAATGG+TGG 0.629674 4_4:+72612720 Msa0701220:three_prime_UTR
TCCAATCTACAGAAGTGGGA+AGG 0.633136 4_4:-72611156 None:intergenic
CAGCACAACCCTTACTAGCA+GGG 0.633326 4_4:-72611622 None:intergenic
CTGATCCATCCAAAACCAGA+AGG 0.636040 4_4:-72611899 None:intergenic
TGTGCAATCAATGCTGCGGT+TGG 0.646120 4_4:+72612499 Msa0701220:CDS
GTACTAGTACATACATAAAG+GGG 0.652331 4_4:-72612690 None:intergenic
CAGTGACTGAGAATGCCCAA+TGG 0.662774 4_4:-72611523 None:intergenic
AATTGAGTACTCACTAGACA+AGG 0.669581 4_4:-72610810 None:intergenic
AGACTATGCCAATTCAGAGG+AGG 0.671634 4_4:+72610916 Msa0701220:CDS
GCGAGACTATGCCAATTCAG+AGG 0.673652 4_4:+72610913 Msa0701220:CDS
GTTTGCTGATATGAGTCCTG+AGG 0.681956 4_4:+72611042 Msa0701220:CDS
AAGACCAAGAGATCAAACAT+TGG 0.686288 4_4:+72610700 Msa0701220:five_prime_UTR
TTGGGCATTCTCAGTCACTG+GGG 0.757924 4_4:+72611526 Msa0701220:CDS
TGTATGTGCAATCAATGCTG+CGG 0.774207 4_4:+72612495 Msa0701220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTCATAAACATATAT+AGG - chr4_4:72611287-72611306 None:intergenic 10.0%
!! AAAAAAAACATATAATTTGA+TGG - chr4_4:72611840-72611859 None:intergenic 10.0%
!!! AAATTTTTAAAACATTAACT+TGG + chr4_4:72612114-72612133 Msa0701220:intron 10.0%
!! TCTCATAATATATATAATAA+TGG + chr4_4:72612717-72612736 Msa0701220:three_prime_UTR 10.0%
!! ATAAAAATATACTTAGAAAA+GGG - chr4_4:72612780-72612799 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG - chr4_4:72612781-72612800 None:intergenic 10.0%
!! TTAAATTCATAAACATATAT+AGG - chr4_4:72611287-72611306 None:intergenic 10.0%
!! AAAAAAAACATATAATTTGA+TGG - chr4_4:72611840-72611859 None:intergenic 10.0%
!!! AAATTTTTAAAACATTAACT+TGG + chr4_4:72612114-72612133 Msa0701220:intron 10.0%
!! TCTCATAATATATATAATAA+TGG + chr4_4:72612717-72612736 Msa0701220:three_prime_UTR 10.0%
!! ATAAAAATATACTTAGAAAA+GGG - chr4_4:72612780-72612799 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG - chr4_4:72612781-72612800 None:intergenic 10.0%
!! TGAAAATTACTAATAAAGAA+TGG - chr4_4:72611249-72611268 None:intergenic 15.0%
!!! AATATACAAGTGAATTTTTA+AGG + chr4_4:72611395-72611414 Msa0701220:intron 15.0%
!!! TAATAATCCATATATTTTCT+TGG + chr4_4:72611466-72611485 Msa0701220:intron 15.0%
!!! TTATATGTTTTTTTTCTTGA+AGG + chr4_4:72611845-72611864 Msa0701220:intron 15.0%
!! CATAATATATATAATAATGG+TGG + chr4_4:72612720-72612739 Msa0701220:three_prime_UTR 15.0%
!! TGAAAATTACTAATAAAGAA+TGG - chr4_4:72611249-72611268 None:intergenic 15.0%
!!! AATATACAAGTGAATTTTTA+AGG + chr4_4:72611395-72611414 Msa0701220:intron 15.0%
!!! TAATAATCCATATATTTTCT+TGG + chr4_4:72611466-72611485 Msa0701220:intron 15.0%
!!! TTATATGTTTTTTTTCTTGA+AGG + chr4_4:72611845-72611864 Msa0701220:intron 15.0%
!! CATAATATATATAATAATGG+TGG + chr4_4:72612720-72612739 Msa0701220:three_prime_UTR 15.0%
!! TTTAAATATCTCAAATCTCT+TGG - chr4_4:72610948-72610967 None:intergenic 20.0%
!! CTCATTGATATACTTAAAAT+TGG - chr4_4:72610972-72610991 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG + chr4_4:72611315-72611334 Msa0701220:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG - chr4_4:72611320-72611339 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG - chr4_4:72611476-72611495 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG + chr4_4:72611710-72611729 Msa0701220:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG - chr4_4:72611772-72611791 None:intergenic 20.0%
!!! TGCACTTAAGAAATTTTTTT+AGG + chr4_4:72612139-72612158 Msa0701220:intron 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG + chr4_4:72612288-72612307 Msa0701220:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG + chr4_4:72612289-72612308 Msa0701220:intron 20.0%
!! TTTAAATATCTCAAATCTCT+TGG - chr4_4:72610948-72610967 None:intergenic 20.0%
!! CTCATTGATATACTTAAAAT+TGG - chr4_4:72610972-72610991 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG + chr4_4:72611315-72611334 Msa0701220:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG - chr4_4:72611320-72611339 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG - chr4_4:72611476-72611495 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG + chr4_4:72611710-72611729 Msa0701220:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG - chr4_4:72611772-72611791 None:intergenic 20.0%
!!! TGCACTTAAGAAATTTTTTT+AGG + chr4_4:72612139-72612158 Msa0701220:intron 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG + chr4_4:72612288-72612307 Msa0701220:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG + chr4_4:72612289-72612308 Msa0701220:intron 20.0%
!! GGTTTTTACTTTAATGCATT+TGG + chr4_4:72611647-72611666 Msa0701220:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG - chr4_4:72611716-72611735 None:intergenic 25.0%
!! AAAGTCAATTGGTTTAACTA+TGG - chr4_4:72612086-72612105 None:intergenic 25.0%
! TTTGACTATTGAAAGTCAAT+TGG - chr4_4:72612097-72612116 None:intergenic 25.0%
! AAGGTTACTTGTTTATCAAA+AGG + chr4_4:72612446-72612465 Msa0701220:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG + chr4_4:72612464-72612483 Msa0701220:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG - chr4_4:72612528-72612547 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG - chr4_4:72612694-72612713 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG - chr4_4:72612695-72612714 None:intergenic 25.0%
!! GGTTTTTACTTTAATGCATT+TGG + chr4_4:72611647-72611666 Msa0701220:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG - chr4_4:72611716-72611735 None:intergenic 25.0%
!! AAAGTCAATTGGTTTAACTA+TGG - chr4_4:72612086-72612105 None:intergenic 25.0%
! TTTGACTATTGAAAGTCAAT+TGG - chr4_4:72612097-72612116 None:intergenic 25.0%
! AAGGTTACTTGTTTATCAAA+AGG + chr4_4:72612446-72612465 Msa0701220:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG + chr4_4:72612464-72612483 Msa0701220:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG - chr4_4:72612528-72612547 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG - chr4_4:72612694-72612713 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG - chr4_4:72612695-72612714 None:intergenic 25.0%
! AAAGACATGTAATGGAAATG+AGG - chr4_4:72610784-72610803 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG - chr4_4:72611213-72611232 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG + chr4_4:72611508-72611527 Msa0701220:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG + chr4_4:72611556-72611575 Msa0701220:CDS 30.0%
TTTACTTTAATGCATTTGGC+TGG + chr4_4:72611651-72611670 Msa0701220:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG + chr4_4:72611652-72611671 Msa0701220:CDS 30.0%
! GTGTCGATATATCTTTCAAA+AGG + chr4_4:72612185-72612204 Msa0701220:intron 30.0%
ATCTTTCAAAAGGTTGAATC+TGG + chr4_4:72612195-72612214 Msa0701220:intron 30.0%
AGAACTGCAAAAAAGATTCA+AGG + chr4_4:72612326-72612345 Msa0701220:CDS 30.0%
ATTGGATTGTGAAAAACTCA+TGG + chr4_4:72612404-72612423 Msa0701220:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG + chr4_4:72612405-72612424 Msa0701220:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG - chr4_4:72612529-72612548 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG - chr4_4:72612693-72612712 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG - chr4_4:72612769-72612788 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG - chr4_4:72612897-72612916 None:intergenic 30.0%
! AAAGACATGTAATGGAAATG+AGG - chr4_4:72610784-72610803 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG - chr4_4:72611213-72611232 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG + chr4_4:72611508-72611527 Msa0701220:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG + chr4_4:72611556-72611575 Msa0701220:CDS 30.0%
TTTACTTTAATGCATTTGGC+TGG + chr4_4:72611651-72611670 Msa0701220:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG + chr4_4:72611652-72611671 Msa0701220:CDS 30.0%
! GTGTCGATATATCTTTCAAA+AGG + chr4_4:72612185-72612204 Msa0701220:intron 30.0%
ATCTTTCAAAAGGTTGAATC+TGG + chr4_4:72612195-72612214 Msa0701220:intron 30.0%
AGAACTGCAAAAAAGATTCA+AGG + chr4_4:72612326-72612345 Msa0701220:CDS 30.0%
ATTGGATTGTGAAAAACTCA+TGG + chr4_4:72612404-72612423 Msa0701220:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG + chr4_4:72612405-72612424 Msa0701220:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG - chr4_4:72612529-72612548 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG - chr4_4:72612693-72612712 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG - chr4_4:72612769-72612788 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG - chr4_4:72612897-72612916 None:intergenic 30.0%
AATGTTTGATCTCTTGGTCT+TGG - chr4_4:72610701-72610720 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG + chr4_4:72610700-72610719 Msa0701220:five_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG - chr4_4:72610707-72610726 None:intergenic 35.0%
CAGAATGAACTTTGTGATGT+GGG - chr4_4:72610750-72610769 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG - chr4_4:72610751-72610770 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG - chr4_4:72610792-72610811 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG - chr4_4:72610813-72610832 None:intergenic 35.0%
TTCAAACACTTCTTCATCAG+AGG - chr4_4:72610864-72610883 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG + chr4_4:72610876-72610895 Msa0701220:CDS 35.0%
! TAGGTTTTACTAAACTCCTC+AGG - chr4_4:72611061-72611080 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG - chr4_4:72611080-72611099 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG + chr4_4:72611507-72611526 Msa0701220:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG + chr4_4:72611557-72611576 Msa0701220:CDS 35.0%
! CCATAATTTCTTGTGCTGAT+AGG - chr4_4:72611595-72611614 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG + chr4_4:72611592-72611611 Msa0701220:CDS 35.0%
TTTGGCTGGGTTATTGAAAA+TGG + chr4_4:72611665-72611684 Msa0701220:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG + chr4_4:72611721-72611740 Msa0701220:CDS 35.0%
! CATTCTAACATCTTAGCTTG+TGG + chr4_4:72611812-72611831 Msa0701220:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG + chr4_4:72611860-72611879 Msa0701220:intron 35.0%
!! TGTTAGTATTGACAACCTTC+TGG + chr4_4:72611884-72611903 Msa0701220:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG + chr4_4:72611890-72611909 Msa0701220:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG - chr4_4:72611986-72612005 None:intergenic 35.0%
TAAAGTTTAGTGCTAATGCG+AGG + chr4_4:72612163-72612182 Msa0701220:intron 35.0%
TGACTAAAATAGGGAGTCTA+TGG + chr4_4:72612298-72612317 Msa0701220:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG + chr4_4:72612343-72612362 Msa0701220:CDS 35.0%
! AAATCTTGTTGGTCTAATCG+TGG + chr4_4:72612354-72612373 Msa0701220:CDS 35.0%
! AATCTTGTTGGTCTAATCGT+GGG + chr4_4:72612355-72612374 Msa0701220:CDS 35.0%
! TCTAATCGTGGGTTATGATT+CGG + chr4_4:72612366-72612385 Msa0701220:CDS 35.0%
TGGATTGTGAAAAACTCATG+GGG + chr4_4:72612406-72612425 Msa0701220:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG + chr4_4:72612416-72612435 Msa0701220:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG + chr4_4:72612417-72612436 Msa0701220:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG + chr4_4:72612472-72612491 Msa0701220:CDS 35.0%
TTGATTGCACATACACCATA+AGG - chr4_4:72612490-72612509 None:intergenic 35.0%
!!! TCCTTTTGAGACCTATCTAT+CGG + chr4_4:72612598-72612617 Msa0701220:three_prime_UTR 35.0%
! GTCTACTCATTTTGTATGCT+GGG - chr4_4:72612874-72612893 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG - chr4_4:72612896-72612915 None:intergenic 35.0%
AATGTTTGATCTCTTGGTCT+TGG - chr4_4:72610701-72610720 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG + chr4_4:72610700-72610719 Msa0701220:five_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG - chr4_4:72610707-72610726 None:intergenic 35.0%
CAGAATGAACTTTGTGATGT+GGG - chr4_4:72610750-72610769 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG - chr4_4:72610751-72610770 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG - chr4_4:72610792-72610811 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG - chr4_4:72610813-72610832 None:intergenic 35.0%
TTCAAACACTTCTTCATCAG+AGG - chr4_4:72610864-72610883 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG + chr4_4:72610876-72610895 Msa0701220:CDS 35.0%
! TAGGTTTTACTAAACTCCTC+AGG - chr4_4:72611061-72611080 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG - chr4_4:72611080-72611099 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG + chr4_4:72611507-72611526 Msa0701220:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG + chr4_4:72611557-72611576 Msa0701220:CDS 35.0%
! CCATAATTTCTTGTGCTGAT+AGG - chr4_4:72611595-72611614 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG + chr4_4:72611592-72611611 Msa0701220:CDS 35.0%
TTTGGCTGGGTTATTGAAAA+TGG + chr4_4:72611665-72611684 Msa0701220:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG + chr4_4:72611721-72611740 Msa0701220:CDS 35.0%
! CATTCTAACATCTTAGCTTG+TGG + chr4_4:72611812-72611831 Msa0701220:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG + chr4_4:72611860-72611879 Msa0701220:intron 35.0%
!! TGTTAGTATTGACAACCTTC+TGG + chr4_4:72611884-72611903 Msa0701220:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG + chr4_4:72611890-72611909 Msa0701220:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG - chr4_4:72611986-72612005 None:intergenic 35.0%
TAAAGTTTAGTGCTAATGCG+AGG + chr4_4:72612163-72612182 Msa0701220:intron 35.0%
TGACTAAAATAGGGAGTCTA+TGG + chr4_4:72612298-72612317 Msa0701220:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG + chr4_4:72612343-72612362 Msa0701220:CDS 35.0%
! AAATCTTGTTGGTCTAATCG+TGG + chr4_4:72612354-72612373 Msa0701220:CDS 35.0%
! AATCTTGTTGGTCTAATCGT+GGG + chr4_4:72612355-72612374 Msa0701220:CDS 35.0%
! TCTAATCGTGGGTTATGATT+CGG + chr4_4:72612366-72612385 Msa0701220:CDS 35.0%
TGGATTGTGAAAAACTCATG+GGG + chr4_4:72612406-72612425 Msa0701220:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG + chr4_4:72612416-72612435 Msa0701220:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG + chr4_4:72612417-72612436 Msa0701220:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG + chr4_4:72612472-72612491 Msa0701220:CDS 35.0%
TTGATTGCACATACACCATA+AGG - chr4_4:72612490-72612509 None:intergenic 35.0%
!!! TCCTTTTGAGACCTATCTAT+CGG + chr4_4:72612598-72612617 Msa0701220:three_prime_UTR 35.0%
! GTCTACTCATTTTGTATGCT+GGG - chr4_4:72612874-72612893 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG - chr4_4:72612896-72612915 None:intergenic 35.0%
!! GAGTACTCAATTTCTAGCCA+TGG + chr4_4:72610821-72610840 Msa0701220:CDS 40.0%
!! AATTTCTAGCCATGGCAAGT+TGG + chr4_4:72610829-72610848 Msa0701220:CDS 40.0%
AAAACTTGTCCAACTTGCCA+TGG - chr4_4:72610841-72610860 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG + chr4_4:72610883-72610902 Msa0701220:CDS 40.0%
GGAATCTGCATCTCTATCTT+TGG - chr4_4:72611088-72611107 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG + chr4_4:72611166-72611185 Msa0701220:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG + chr4_4:72611669-72611688 Msa0701220:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG + chr4_4:72611950-72611969 Msa0701220:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG + chr4_4:72612301-72612320 Msa0701220:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG + chr4_4:72612418-72612437 Msa0701220:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG + chr4_4:72612495-72612514 Msa0701220:CDS 40.0%
CTTTATCTTCAGCCATGTAG+TGG + chr4_4:72612539-72612558 Msa0701220:CDS 40.0%
ACCGATAGATAGGTCTCAAA+AGG - chr4_4:72612602-72612621 None:intergenic 40.0%
GCTTAGAGAAACCGATAGAT+AGG - chr4_4:72612612-72612631 None:intergenic 40.0%
TCCATGCTAGCACTACAATA+TGG - chr4_4:72612639-72612658 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG + chr4_4:72612642-72612661 Msa0701220:three_prime_UTR 40.0%
GTAGTGCTAGCATGGAATTT+GGG + chr4_4:72612643-72612662 Msa0701220:three_prime_UTR 40.0%
TAGTGCTAGCATGGAATTTG+GGG + chr4_4:72612644-72612663 Msa0701220:three_prime_UTR 40.0%
!!! GAGCTAGTTTGCTCATTTTC+AGG - chr4_4:72612826-72612845 None:intergenic 40.0%
! GGTCTACTCATTTTGTATGC+TGG - chr4_4:72612875-72612894 None:intergenic 40.0%
!! GAGTACTCAATTTCTAGCCA+TGG + chr4_4:72610821-72610840 Msa0701220:CDS 40.0%
!! AATTTCTAGCCATGGCAAGT+TGG + chr4_4:72610829-72610848 Msa0701220:CDS 40.0%
AAAACTTGTCCAACTTGCCA+TGG - chr4_4:72610841-72610860 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG + chr4_4:72610883-72610902 Msa0701220:CDS 40.0%
GGAATCTGCATCTCTATCTT+TGG - chr4_4:72611088-72611107 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG + chr4_4:72611166-72611185 Msa0701220:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG + chr4_4:72611669-72611688 Msa0701220:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG + chr4_4:72611950-72611969 Msa0701220:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG + chr4_4:72612301-72612320 Msa0701220:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG + chr4_4:72612418-72612437 Msa0701220:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG + chr4_4:72612495-72612514 Msa0701220:CDS 40.0%
CTTTATCTTCAGCCATGTAG+TGG + chr4_4:72612539-72612558 Msa0701220:CDS 40.0%
ACCGATAGATAGGTCTCAAA+AGG - chr4_4:72612602-72612621 None:intergenic 40.0%
GCTTAGAGAAACCGATAGAT+AGG - chr4_4:72612612-72612631 None:intergenic 40.0%
TCCATGCTAGCACTACAATA+TGG - chr4_4:72612639-72612658 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG + chr4_4:72612642-72612661 Msa0701220:three_prime_UTR 40.0%
GTAGTGCTAGCATGGAATTT+GGG + chr4_4:72612643-72612662 Msa0701220:three_prime_UTR 40.0%
TAGTGCTAGCATGGAATTTG+GGG + chr4_4:72612644-72612663 Msa0701220:three_prime_UTR 40.0%
!!! GAGCTAGTTTGCTCATTTTC+AGG - chr4_4:72612826-72612845 None:intergenic 40.0%
! GGTCTACTCATTTTGTATGC+TGG - chr4_4:72612875-72612894 None:intergenic 40.0%
CAATTGTGGAAGAAGGAGCA+CGG + chr4_4:72610890-72610909 Msa0701220:CDS 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG + chr4_4:72610891-72610910 Msa0701220:CDS 45.0%
AGACTATGCCAATTCAGAGG+AGG + chr4_4:72610916-72610935 Msa0701220:CDS 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG - chr4_4:72610927-72610946 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG + chr4_4:72611042-72611061 Msa0701220:CDS 45.0%
AGATGCAGATTCCCTCCAAT+CGG + chr4_4:72611095-72611114 Msa0701220:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG + chr4_4:72611155-72611174 Msa0701220:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG - chr4_4:72611159-72611178 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG + chr4_4:72611158-72611177 Msa0701220:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG + chr4_4:72611159-72611178 Msa0701220:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG - chr4_4:72611163-72611182 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG - chr4_4:72611164-72611183 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG + chr4_4:72611185-72611204 Msa0701220:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG + chr4_4:72611186-72611205 Msa0701220:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG + chr4_4:72611525-72611544 Msa0701220:CDS 45.0%
GGCTGGGTTATTGAAAATGG+TGG + chr4_4:72611668-72611687 Msa0701220:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG + chr4_4:72611894-72611913 Msa0701220:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG - chr4_4:72611902-72611921 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG - chr4_4:72611957-72611976 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG + chr4_4:72611960-72611979 Msa0701220:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG + chr4_4:72611978-72611997 Msa0701220:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG + chr4_4:72612373-72612392 Msa0701220:CDS 45.0%
CGGTGAATGGTGAAGACTAT+TGG + chr4_4:72612386-72612405 Msa0701220:CDS 45.0%
GGAAAAGATTGGGGAGAGAA+AGG + chr4_4:72612427-72612446 Msa0701220:CDS 45.0%
ATCTTCAGCCATGTAGTGGT+TGG + chr4_4:72612543-72612562 Msa0701220:exon 45.0%
TGCTCTAACCAACCACTACA+TGG - chr4_4:72612554-72612573 None:intergenic 45.0%
GCCATATTGTAGTGCTAGCA+TGG + chr4_4:72612635-72612654 Msa0701220:three_prime_UTR 45.0%
CAATTGTGGAAGAAGGAGCA+CGG + chr4_4:72610890-72610909 Msa0701220:CDS 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG + chr4_4:72610891-72610910 Msa0701220:CDS 45.0%
AGACTATGCCAATTCAGAGG+AGG + chr4_4:72610916-72610935 Msa0701220:CDS 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG - chr4_4:72610927-72610946 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG + chr4_4:72611042-72611061 Msa0701220:CDS 45.0%
AGATGCAGATTCCCTCCAAT+CGG + chr4_4:72611095-72611114 Msa0701220:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG + chr4_4:72611155-72611174 Msa0701220:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG - chr4_4:72611159-72611178 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG + chr4_4:72611158-72611177 Msa0701220:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG + chr4_4:72611159-72611178 Msa0701220:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG - chr4_4:72611163-72611182 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG - chr4_4:72611164-72611183 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG + chr4_4:72611185-72611204 Msa0701220:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG + chr4_4:72611186-72611205 Msa0701220:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG + chr4_4:72611525-72611544 Msa0701220:CDS 45.0%
GGCTGGGTTATTGAAAATGG+TGG + chr4_4:72611668-72611687 Msa0701220:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG + chr4_4:72611894-72611913 Msa0701220:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG - chr4_4:72611902-72611921 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG - chr4_4:72611957-72611976 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG + chr4_4:72611960-72611979 Msa0701220:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG + chr4_4:72611978-72611997 Msa0701220:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG + chr4_4:72612373-72612392 Msa0701220:CDS 45.0%
CGGTGAATGGTGAAGACTAT+TGG + chr4_4:72612386-72612405 Msa0701220:CDS 45.0%
GGAAAAGATTGGGGAGAGAA+AGG + chr4_4:72612427-72612446 Msa0701220:CDS 45.0%
ATCTTCAGCCATGTAGTGGT+TGG + chr4_4:72612543-72612562 Msa0701220:exon 45.0%
TGCTCTAACCAACCACTACA+TGG - chr4_4:72612554-72612573 None:intergenic 45.0%
GCCATATTGTAGTGCTAGCA+TGG + chr4_4:72612635-72612654 Msa0701220:three_prime_UTR 45.0%
CGTGCTCCTTCTTCCACAAT+TGG - chr4_4:72610892-72610911 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG + chr4_4:72610913-72610932 Msa0701220:CDS 50.0%
GATGCAGATTCCCTCCAATC+GGG + chr4_4:72611096-72611115 Msa0701220:CDS 50.0%
ATTCCCTCCAATCGGGACAA+TGG + chr4_4:72611103-72611122 Msa0701220:CDS 50.0%
TTCCCTCCAATCGGGACAAT+GGG + chr4_4:72611104-72611123 Msa0701220:CDS 50.0%
TTCCCATTGTCCCGATTGGA+GGG - chr4_4:72611109-72611128 None:intergenic 50.0%
AAGCTTCCCATTGTCCCGAT+TGG - chr4_4:72611113-72611132 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG + chr4_4:72611193-72611212 Msa0701220:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG - chr4_4:72611526-72611545 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG + chr4_4:72611524-72611543 Msa0701220:CDS 50.0%
TTGGGCATTCTCAGTCACTG+GGG + chr4_4:72611526-72611545 Msa0701220:CDS 50.0%
TCAGTCACTGGGGCAATTGA+AGG + chr4_4:72611536-72611555 Msa0701220:CDS 50.0%
GACTGTGACCCTGCTAGTAA+GGG + chr4_4:72611614-72611633 Msa0701220:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG - chr4_4:72611625-72611644 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG + chr4_4:72612499-72612518 Msa0701220:CDS 50.0%
CGTGCTCCTTCTTCCACAAT+TGG - chr4_4:72610892-72610911 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG + chr4_4:72610913-72610932 Msa0701220:CDS 50.0%
GATGCAGATTCCCTCCAATC+GGG + chr4_4:72611096-72611115 Msa0701220:CDS 50.0%
ATTCCCTCCAATCGGGACAA+TGG + chr4_4:72611103-72611122 Msa0701220:CDS 50.0%
TTCCCTCCAATCGGGACAAT+GGG + chr4_4:72611104-72611123 Msa0701220:CDS 50.0%
TTCCCATTGTCCCGATTGGA+GGG - chr4_4:72611109-72611128 None:intergenic 50.0%
AAGCTTCCCATTGTCCCGAT+TGG - chr4_4:72611113-72611132 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG + chr4_4:72611193-72611212 Msa0701220:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG - chr4_4:72611526-72611545 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG + chr4_4:72611524-72611543 Msa0701220:CDS 50.0%
TTGGGCATTCTCAGTCACTG+GGG + chr4_4:72611526-72611545 Msa0701220:CDS 50.0%
TCAGTCACTGGGGCAATTGA+AGG + chr4_4:72611536-72611555 Msa0701220:CDS 50.0%
GACTGTGACCCTGCTAGTAA+GGG + chr4_4:72611614-72611633 Msa0701220:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG - chr4_4:72611625-72611644 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG + chr4_4:72612499-72612518 Msa0701220:CDS 50.0%
CTTCCCATTGTCCCGATTGG+AGG - chr4_4:72611110-72611129 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG + chr4_4:72611613-72611632 Msa0701220:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG - chr4_4:72611626-72611645 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG + chr4_4:72611623-72611642 Msa0701220:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG + chr4_4:72611626-72611645 Msa0701220:CDS 55.0%
CTTCCCATTGTCCCGATTGG+AGG - chr4_4:72611110-72611129 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG + chr4_4:72611613-72611632 Msa0701220:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG - chr4_4:72611626-72611645 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG + chr4_4:72611623-72611642 Msa0701220:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG + chr4_4:72611626-72611645 Msa0701220:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 72610694 72612920 72610694 ID=Msa0701220;Name=Msa0701220
chr4_4 mRNA 72610694 72612920 72610694 ID=Msa0701220-mRNA-1;Parent=Msa0701220;Name=Msa0701220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|4|362|364
chr4_4 exon 72610694 72611223 72610694 ID=Msa0701220-mRNA-1:exon:22196;Parent=Msa0701220-mRNA-1
chr4_4 exon 72611519 72611742 72611519 ID=Msa0701220-mRNA-1:exon:22197;Parent=Msa0701220-mRNA-1
chr4_4 exon 72611867 72612001 72611867 ID=Msa0701220-mRNA-1:exon:22198;Parent=Msa0701220-mRNA-1
chr4_4 exon 72612310 72612920 72612310 ID=Msa0701220-mRNA-1:exon:22199;Parent=Msa0701220-mRNA-1
chr4_4 five_prime_UTR 72610694 72610736 72610694 ID=Msa0701220-mRNA-1:five_prime_utr;Parent=Msa0701220-mRNA-1
chr4_4 CDS 72610737 72611223 72610737 ID=Msa0701220-mRNA-1:cds;Parent=Msa0701220-mRNA-1
chr4_4 CDS 72611519 72611742 72611519 ID=Msa0701220-mRNA-1:cds;Parent=Msa0701220-mRNA-1
chr4_4 CDS 72611867 72612001 72611867 ID=Msa0701220-mRNA-1:cds;Parent=Msa0701220-mRNA-1
chr4_4 CDS 72612310 72612558 72612310 ID=Msa0701220-mRNA-1:cds;Parent=Msa0701220-mRNA-1
chr4_4 three_prime_UTR 72612559 72612920 72612559 ID=Msa0701220-mRNA-1:three_prime_utr;Parent=Msa0701220-mRNA-1
Gene Sequence

>Msa0701220

ATGATGATATCCCACATCACAAAGTTCATTCTGTCTTTTTTAATCCTCATTTCCATTACATGTCTTTCATTTGCCTTGTCTAGTGAGTACTCAATTTCTAGCCATGGCAAGTTGGACAAGTTTTCCTCTGATGAAGAAGTGTTTGAACTCTTCCAATTGTGGAAGAAGGAGCACGGGCGAGACTATGCCAATTCAGAGGAGGAAAATGCCAAGAGATTTGAGATATTTAAAACCAATTTTAAGTATATCAATGAGATGAATGCAAAGAGAAAATCGCAAACACAACATCGTTTGAGTCTCAACAAGTTTGCTGATATGAGTCCTGAGGAGTTTAGTAAAACCTACTTACCAAAGATAGAGATGCAGATTCCCTCCAATCGGGACAATGGGAAGCTTAGAGATGATGATGATTGTGAAAACCTTCCCACTTCTGTAGATTGGAGGGAAAAAGGAGCTGTGACTGAAGTTAGGGACCAAGGAAATTGTCAGAGCCATTGGGCATTCTCAGTCACTGGGGCAATTGAAGGACTAAACAAAATAGTCACGGGAAATCTTATCAACCTATCAGCACAAGAAATTATGGACTGTGACCCTGCTAGTAAGGGTTGTGCTGGAGGTTTTTACTTTAATGCATTTGGCTGGGTTATTGAAAATGGTGGGATTGATACAGAAGCTAACTATCCTTATTTAGCTAAAAATGGTACTTGCAAGGAAAATGCAAACAAGGTTGTTAGTATTGACAACCTTCTGGTTTTGGATGGATCAGAAGAAGCACTTTTGTGTCGTTCTAGTAAACAACCTCTTAGTGTGAGTTTGGATGCAACTGGCCTTCAATTCTATGCTGGTGGAGTCTATGGTGGTGAGAACTGCAAAAAAGATTCAAGGAATGCAAATCTTGTTGGTCTAATCGTGGGTTATGATTCGGTGAATGGTGAAGACTATTGGATTGTGAAAAACTCATGGGGAAAAGATTGGGGAGAGAAAGGTTACTTGTTTATCAAAAGGAATGTTATTGAAGATTGGCCTTATGGTGTATGTGCAATCAATGCTGCGGTTGGTTACCCAATCAAAACAGCTTTATCTTCAGCCATGTAG
Protein sequence

>Msa0701220

MMISHITKFILSFLILISITCLSFALSSEYSISSHGKLDKFSSDEEVFELFQLWKKEHGRDYANSEEENAKRFEIFKTNFKYINEMNAKRKSQTQHRLSLNKFADMSPEEFSKTYLPKIEMQIPSNRDNGKLRDDDDCENLPTSVDWREKGAVTEVRDQGNCQSHWAFSVTGAIEGLNKIVTGNLINLSAQEIMDCDPASKGCAGGFYFNAFGWVIENGGIDTEANYPYLAKNGTCKENANKVVSIDNLLVLDGSEEALLCRSSKQPLSVSLDATGLQFYAGGVYGGENCKKDSRNANLVGLIVGYDSVNGEDYWIVKNSWGKDWGEKGYLFIKRNVIEDWPYGVCAINAAVGYPIKTALSSAM*