AlfalfaGEDB | Msa0067330

M. sativa cultivar zhongmu-4 / Msa0067330

KEGG: K07024
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067330	XP_013467363.3	98.329	359	6	0	72	430	17	375	0.0	746

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067330	sp\|Q940H3\|TBL36_ARATH	63.585	357	122	4	79	430	21	374	4.69e-169	482

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067330	A0A072VTJ0	98.329	359	6	0	72	430	17	375	0.0	746

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0067330	0.844514	7.212856e-59	-8.615850e-47
Msa0005890	Msa0067330	0.836515	8.945413e-57	-8.615850e-47
Msa0017670	Msa0067330	0.812908	3.345828e-51	-8.615850e-47
Msa0019900	Msa0067330	0.837183	6.040899e-57	-8.615850e-47
Msa0025160	Msa0067330	0.827477	1.531447e-54	-8.615850e-47
Msa0025580	Msa0067330	0.819920	9.013816e-53	-8.615850e-47
Msa0027820	Msa0067330	0.801878	7.313031e-49	-8.615850e-47
Msa0032460	Msa0067330	0.811454	6.945293e-51	-8.615850e-47
Msa0034120	Msa0067330	0.819563	1.087447e-52	-8.615850e-47
Msa0035270	Msa0067330	0.810001	1.431650e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067330	MtrunA17_Chr1g0171171	98.329	359	6	0	72	430	17	375	0.0	746
Msa0067330	MtrunA17_Chr1g0210771	74.792	361	86	3	74	430	23	382	0.0	580
Msa0067330	MtrunA17_Chr5g0430371	39.316	351	190	5	100	430	52	399	4.36e-96	294
Msa0067330	MtrunA17_Chr2g0283581	43.544	333	168	7	105	430	39	358	5.85e-94	287
Msa0067330	MtrunA17_Chr7g0258851	41.449	345	185	6	103	430	243	587	3.46e-93	293
Msa0067330	MtrunA17_Chr2g0325481	42.560	336	173	7	102	430	44	366	4.98e-93	285
Msa0067330	MtrunA17_Chr1g0175671	40.870	345	187	6	103	430	165	509	3.46e-91	285
Msa0067330	MtrunA17_Chr2g0314801	41.791	335	177	5	104	430	29	353	9.07e-91	278
Msa0067330	MtrunA17_Chr3g0097891	43.202	331	169	8	108	430	31	350	1.65e-90	278
Msa0067330	MtrunA17_Chr2g0314791	43.413	334	161	9	108	430	29	345	7.26e-90	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0067330	AT3G54260.1	63.585	357	122	4	79	430	21	374	4.77e-170	482
Msa0067330	AT2G31110.2	39.835	364	200	6	75	430	10	362	1.59e-91	281
Msa0067330	AT5G58600.1	40.290	345	189	7	99	430	60	400	1.25e-90	280
Msa0067330	AT5G06700.1	40.870	345	187	6	103	430	250	594	2.38e-90	286
Msa0067330	AT1G29050.1	39.714	350	185	5	96	430	40	378	2.72e-89	276
Msa0067330	AT2G30900.1	41.964	336	173	9	106	430	41	365	6.14e-88	272
Msa0067330	AT2G42570.1	39.940	333	183	5	104	430	43	364	4.20e-87	270
Msa0067330	AT2G34070.1	38.576	337	189	5	101	430	58	383	5.24e-87	270
Msa0067330	AT3G12060.1	39.710	345	191	5	103	430	191	535	2.59e-86	274
Msa0067330	AT5G20590.1	38.841	345	193	6	103	430	136	479	1.44e-85	270

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Find 125 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATACTTATCCTATA+TGG	0.347597	1_2:+32285835	None:intergenic
AAACAAGAGAGTCTTACATT+TGG	0.395362	1_2:-32287118	Msa0067330:CDS
AAACTGATAATAGACTCACA+TGG	0.751169	1_2:+32285548	None:intergenic
AAATATCAGGCACACCAGGG+AGG	0.749580	1_2:+32286013	None:intergenic
AACATCTCATTCCAAATATC+AGG	0.370214	1_2:+32286000	None:intergenic
AACTCTTCTGTGTAGGTGGA+GGG	0.455050	1_2:-32285597	Msa0067330:three_prime_UTR
AACTGTTTGTCAACATGTAA+CGG	0.562704	1_2:-32285885	Msa0067330:three_prime_UTR
AAGCTTCAACAACGACTCTT+TGG	0.267863	1_2:-32290670	Msa0067330:CDS
AAGGAAGAGAATCATGTTGG+TGG	0.613045	1_2:-32287401	Msa0067330:CDS
AAGGACTGAGCACATGGGCA+AGG	0.610853	1_2:-32286594	Msa0067330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTTCACACCTCTATATAA+AGG	-	chr1_2:32285450-32285469	Msa0067330:three_prime_UTR	30.0%
ATCTTCACTCCTTTATATAG+AGG	+	chr1_2:32285462-32285481	None:intergenic	30.0%
AACACTTGATATACAATCAG+AGG	+	chr1_2:32285647-32285666	None:intergenic	30.0%
TAATCAGAATCTAAATGCAG+CGG	+	chr1_2:32285958-32285977	None:intergenic	30.0%
ATACCAATATTTGTCCATGA+AGG	+	chr1_2:32286090-32286109	None:intergenic	30.0%
TCATGGACAAATATTGGTAT+TGG	-	chr1_2:32286090-32286109	Msa0067330:CDS	30.0%
ACATTAAGTACTCTCTCTTT+CGG	+	chr1_2:32286368-32286387	None:intergenic	30.0%
TGCTTATGTTATATACTTGG+TGG	+	chr1_2:32286611-32286630	None:intergenic	30.0%
AAAGAAAGCAAATGAGTCAT+TGG	+	chr1_2:32286899-32286918	None:intergenic	30.0%
TAACTGCAGTACTAAGATAA+GGG	+	chr1_2:32287108-32287127	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	32285338	32290759	32285338	ID=Msa0067330;Name=Msa0067330
chr1_2	mRNA	32285338	32290759	32285338	ID=Msa0067330-mRNA-1;Parent=Msa0067330;Name=Msa0067330-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.66\|0.57\|0.71\|1\|1\|7\|646\|430
chr1_2	exon	32285338	32286281	32285338	ID=Msa0067330-mRNA-1:exon:10600;Parent=Msa0067330-mRNA-1
chr1_2	exon	32286523	32286681	32286523	ID=Msa0067330-mRNA-1:exon:10599;Parent=Msa0067330-mRNA-1
chr1_2	exon	32287024	32287205	32287024	ID=Msa0067330-mRNA-1:exon:10598;Parent=Msa0067330-mRNA-1
chr1_2	exon	32287285	32287456	32287285	ID=Msa0067330-mRNA-1:exon:10597;Parent=Msa0067330-mRNA-1
chr1_2	exon	32288894	32289163	32288894	ID=Msa0067330-mRNA-1:exon:10596;Parent=Msa0067330-mRNA-1
chr1_2	exon	32290274	32290395	32290274	ID=Msa0067330-mRNA-1:exon:10595;Parent=Msa0067330-mRNA-1
chr1_2	exon	32290670	32290759	32290670	ID=Msa0067330-mRNA-1:exon:10594;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32290670	32290759	32290670	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32290274	32290395	32290274	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32288894	32289163	32288894	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32287285	32287456	32287285	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32287024	32287205	32287024	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32286523	32286681	32286523	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	CDS	32285984	32286281	32285984	ID=Msa0067330-mRNA-1:cds;Parent=Msa0067330-mRNA-1
chr1_2	three_prime_UTR	32285338	32285983	32285338	ID=Msa0067330-mRNA-1:three_prime_utr;Parent=Msa0067330-mRNA-1

Gene Sequence

>Msa0067330

ATGGATTTCAAATTAGTTCTTCATAGGACAACAACCAAATCAGGCAAAAGATCAAAGGTGAAAGATCAAGCTTCAACAACGACTCTTTGGTTAGGAAGTCTCTTGCAGTTGTGCTTGAGCAGGAAGTCTCTTGATTGTGTTCTTGAGCAAAGGAAGTCTCTAGCTTGTGTGCTTGAGCAAAGGAAGTCTCTTGCTTGTGTGCTTGAGCAATTCATCTTCCACTGCACATTATCTCTTCTGGACCCACAAGATGATGTTGGCTTTCTAGTTGAACCTGATGATGTTAACATCGTCCAAAACAATAGAGAATCTAGCAAGAGATGTGACTTTTCTGTTGGAAAATGGGTTTATGATGAATCTTACCCTCTTTATGATCCTAACTGCCCTTATCTTAGTACTGCAGTTACTTGTCAAAAGAATGGGAGGCCAGATTCCGATTATGAGAAGTGGAAGTGGAAGCCAAGTGGTTGTTCCATCCCAAGGTTTGATGCACTAAGGTTTCTTGGAAAAATGAGAAGGAAGAGAATCATGTTGGTGGGTGATTCAATAATGAGAAATCAGTGGGAATCTTTAGTATGCTTAGTACAAGGTGTAATACCAACTGGTAGAAAAAGGGTGACCTACCATGGACCTGCAATGGCCTTCCATTCAATGGATTTTGAGACATCAATTGAGTTTCTTTGGGCACCACTGTTAGTTGAACTGAAGAAAAGTCCAGAAAACAAGAGAGTCTTACATTTGGATTTGATTGAGGAGAATGCGAAGTATTGGAGAGGAGTTGATATCCTTGTATTTGATTCAGCTCAGTGGTGGACTCACTCCGATAAAACAAGCTCGTGGGATTACTACAAGGAGGGAAATAATCTGATCAAAAACATGACTCTTATGGTTGCTTATCAAAAAGGACTGAGCACATGGGCAAGGTGGGTCGATCTAAATCTAAACCCTCAAAAAACGAAAGTCATTTTCAGAAGCATGTCACCTAGGCATAACAGGGAAAATGGTTCGAAATGCGACAATCAGAAACAACCTCTACCATTTTTCAGCCTTCAGCAACATGCTCCTGAACCTTTAGTAGTGCTCCAAGGAGTGCTGAAGAAAATGAGATTTCCGGTATACCTGCAAGATATTACGACAATGACTGCCTTACGCAGAGATGGACATCCTTCAGTGTATAGGAAGGCAACCAGCCAAGATGAGAAACAAAGAATAGGCCATTCCTCTGATTGCAGTCATTGGTGCCTCCCTGGTGTGCCTGATATTTGGAATGAGATGTTGAGTGCGCTGCTTTGA

Protein sequence

>Msa0067330

MDFKLVLHRTTTKSGKRSKVKDQASTTTLWLGSLLQLCLSRKSLDCVLEQRKSLACVLEQRKSLACVLEQFIFHCTLSLLDPQDDVGFLVEPDDVNIVQNNRESSKRCDFSVGKWVYDESYPLYDPNCPYLSTAVTCQKNGRPDSDYEKWKWKPSGCSIPRFDALRFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTGRKRVTYHGPAMAFHSMDFETSIEFLWAPLLVELKKSPENKRVLHLDLIEENAKYWRGVDILVFDSAQWWTHSDKTSSWDYYKEGNNLIKNMTLMVAYQKGLSTWARWVDLNLNPQKTKVIFRSMSPRHNRENGSKCDNQKQPLPFFSLQQHAPEPLVVLQGVLKKMRFPVYLQDITTMTALRRDGHPSVYRKATSQDEKQRIGHSSDCSHWCLPGVPDIWNEMLSALL*