AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174230 MtrunA17_Chr8g0379151 95.055 364 18 0 1 364 17 380 0.0 730
Msa1174230 MtrunA17_Chr2g0283741 46.575 365 180 8 2 357 1 359 1.11e-107 320
Msa1174230 MtrunA17_Chr2g0283901 50.145 345 161 8 18 357 18 356 2.08e-106 321
Msa1174230 MtrunA17_Chr3g0144281 41.292 356 181 14 14 357 9 348 9.70e-78 243
Msa1174230 MtrunA17_Chr4g0053311 39.678 373 185 12 6 363 1 348 1.37e-76 240
Msa1174230 MtrunA17_Chr3g0134231 41.484 364 186 13 10 357 10 362 1.77e-76 243
Msa1174230 MtrunA17_Chr3g0142071 42.500 320 166 9 49 359 48 358 1.21e-75 241
Msa1174230 MtrunA17_Chr4g0040851 39.945 363 193 14 1 356 15 359 5.34e-75 236
Msa1174230 MtrunA17_Chr3g0116551 40.730 356 186 13 15 359 6 347 3.93e-74 234
Msa1174230 MtrunA17_Chr1g0208261 42.308 338 171 13 32 357 71 396 2.57e-73 236
Msa1174230 MtrunA17_Chr2g0283751 45.055 273 138 7 9 274 11 278 2.16e-70 222
Msa1174230 MtrunA17_Chr2g0325121 41.401 314 162 11 51 357 39 337 4.70e-70 223
Msa1174230 MtrunA17_Chr4g0041481 40.063 317 164 11 49 355 38 338 1.14e-68 219
Msa1174230 MtrunA17_Chr1g0153011 37.875 367 193 11 2 357 1 343 1.20e-68 222
Msa1174230 MtrunA17_Chr4g0041521 40.379 317 163 11 49 355 38 338 4.81e-68 217
Msa1174230 MtrunA17_Chr4g0024411 38.994 318 179 8 45 355 32 341 5.36e-68 217
Msa1174230 MtrunA17_Chr4g0058081 39.665 358 187 15 14 359 6 346 1.67e-67 216
Msa1174230 MtrunA17_Chr7g0248391 40.575 313 166 9 49 356 40 337 3.93e-67 215
Msa1174230 MtrunA17_Chr5g0405751 38.318 321 179 9 44 355 32 342 6.15e-66 212
Msa1174230 MtrunA17_Chr4g0040881 36.957 322 187 8 41 355 31 343 6.86e-64 207
Msa1174230 MtrunA17_Chr4g0041061 37.304 319 184 8 44 355 34 343 7.24e-64 207
Msa1174230 MtrunA17_Chr4g0041471 36.512 367 182 14 9 356 7 341 1.11e-63 206
Msa1174230 MtrunA17_Chr4g0060251 37.695 321 179 10 45 355 34 343 2.28e-63 205
Msa1174230 MtrunA17_Chr2g0315491 35.457 361 186 11 11 355 10 339 2.02e-62 203
Msa1174230 MtrunA17_Chr7g0248811 39.423 312 170 11 49 355 37 334 2.46e-62 202
Msa1174230 MtrunA17_Chr4g0041081 36.760 321 183 9 44 355 34 343 1.29e-61 201
Msa1174230 MtrunA17_Chr2g0319991 37.963 324 178 12 46 356 30 343 2.46e-60 197
Msa1174230 MtrunA17_Chr1g0155781 35.202 321 174 12 51 352 51 356 2.84e-55 185
Msa1174230 MtrunA17_Chr1g0199131 32.888 374 211 11 6 352 2 362 5.25e-55 185
Msa1174230 MtrunA17_Chr4g0035551 33.155 374 204 13 3 352 1 352 1.06e-54 183
Msa1174230 MtrunA17_Chr2g0311381 35.826 321 168 12 51 348 36 341 4.05e-54 182
Msa1174230 MtrunA17_Chr2g0311471 36.760 321 167 10 54 354 39 343 8.31e-53 178
Msa1174230 MtrunA17_Chr0c27g0493921 31.492 362 226 8 3 356 1 348 4.37e-49 168
Msa1174230 MtrunA17_Chr4g0070441 32.938 337 210 7 3 331 1 329 2.98e-48 166
Msa1174230 MtrunA17_Chr2g0311391 32.564 390 192 16 14 355 4 370 9.68e-48 166
Msa1174230 MtrunA17_Chr2g0283671 42.342 222 118 6 139 356 12 227 3.16e-45 155
Msa1174230 MtrunA17_Chr4g0036731 31.232 349 190 11 14 352 8 316 3.37e-41 147
Msa1174230 MtrunA17_Chr4g0036281 33.010 309 164 10 51 352 48 320 2.33e-40 145
Msa1174230 MtrunA17_Chr1g0156161 38.009 221 126 6 139 354 47 261 2.50e-40 143
Msa1174230 MtrunA17_Chr4g0037291 30.791 354 189 12 14 352 49 361 3.31e-40 145
Msa1174230 MtrunA17_Chr1g0156771 48.077 104 51 2 139 239 53 156 1.20e-26 103
Msa1174230 MtrunA17_Chr2g0283661 26.496 351 173 11 8 355 2 270 2.80e-26 105
Msa1174230 MtrunA17_Chr7g0248421 40.288 139 80 2 166 301 58 196 5.69e-25 100
Msa1174230 MtrunA17_Chr2g0311091 36.424 151 80 5 54 191 37 184 3.57e-22 92.4
Msa1174230 MtrunA17_Chr7g0248371 44.954 109 50 6 250 356 31 131 2.95e-18 80.9
Msa1174230 MtrunA17_Chr7g0271031 26.033 242 139 9 141 352 147 378 3.19e-12 67.4
Msa1174230 MtrunA17_Chr8g0379671 30.709 127 79 4 182 306 23 142 6.43e-12 63.5
Msa1174230 MtrunA17_Chr7g0248661 44.444 81 38 4 277 356 2 76 8.34e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174230 AT5G43060.1 41.944 360 180 12 13 357 9 354 3.52e-82 258
Msa1174230 AT4G23520.1 39.516 372 197 13 2 363 3 356 1.02e-80 251
Msa1174230 AT4G35350.1 41.111 360 192 12 6 358 8 354 2.16e-79 247
Msa1174230 AT1G20850.1 44.543 339 166 13 29 358 30 355 1.70e-78 245
Msa1174230 AT1G09850.1 43.252 326 157 10 45 358 26 335 2.38e-78 247
Msa1174230 AT1G47128.1 40.331 362 192 12 9 357 3 353 1.50e-76 243
Msa1174230 AT4G11310.1 39.178 365 192 13 13 362 9 358 7.35e-75 236
Msa1174230 AT5G50260.1 41.341 358 183 14 13 359 4 345 2.82e-74 234
Msa1174230 AT4G11320.2 37.197 371 210 11 4 362 6 365 9.09e-73 231
Msa1174230 AT4G11320.1 37.197 371 210 11 4 362 6 365 9.09e-73 231
Msa1174230 AT4G36880.1 40.000 350 186 12 25 357 20 362 6.73e-72 229
Msa1174230 AT3G48340.1 38.315 368 189 12 11 362 4 349 1.49e-70 225
Msa1174230 AT3G19400.1 40.361 332 177 13 43 364 36 356 1.18e-69 223
Msa1174230 AT3G19390.1 37.940 369 201 16 2 361 1 350 9.50e-69 223
Msa1174230 AT1G06260.1 37.394 353 197 10 12 357 8 343 4.35e-67 215
Msa1174230 AT3G48350.1 37.883 359 194 15 11 357 3 344 1.30e-66 215
Msa1174230 AT1G29090.1 39.335 361 182 14 13 356 14 354 3.99e-66 213
Msa1174230 AT2G34080.1 36.517 356 205 12 10 356 1 344 6.82e-66 212
Msa1174230 AT3G43960.1 40.244 328 178 12 46 364 36 354 6.46e-65 211
Msa1174230 AT5G45890.1 35.598 368 200 14 1 355 1 344 1.12e-64 209
Msa1174230 AT1G29080.1 36.134 357 205 12 9 356 3 345 3.83e-64 208
Msa1174230 AT3G49340.1 35.942 345 198 11 22 356 9 340 1.72e-63 206
Msa1174230 AT2G27420.1 37.363 364 194 15 10 356 1 347 1.24e-60 199
Msa1174230 AT4G35350.2 40.070 287 152 11 6 282 8 284 8.03e-57 187
Msa1174230 AT1G29110.1 33.894 357 191 13 15 356 7 333 9.78e-56 186
Msa1174230 AT3G54940.2 35.758 330 181 9 51 362 51 367 1.67e-55 186
Msa1174230 AT4G39090.1 34.234 333 183 11 51 363 51 367 1.13e-53 181
Msa1174230 AT5G60360.1 35.256 312 182 8 51 356 59 356 1.33e-52 178
Msa1174230 AT5G60360.2 36.934 287 167 7 51 331 59 337 1.58e-51 175
Msa1174230 AT2G21430.1 35.974 303 164 11 51 333 48 340 2.23e-51 175
Msa1174230 AT5G60360.3 36.934 287 167 7 51 331 59 337 2.45e-51 175
Msa1174230 AT4G16190.1 31.551 374 205 14 13 352 6 362 1.02e-49 171
Msa1174230 AT3G48350.2 35.254 295 169 11 11 294 3 286 1.89e-48 166
Msa1174230 AT3G45310.1 33.333 312 188 9 51 356 59 356 5.33e-48 166
Msa1174230 AT3G45310.2 35.192 287 172 8 51 331 59 337 2.14e-47 164
Msa1174230 AT3G19400.2 40.496 242 131 8 46 279 39 275 2.30e-47 162
Msa1174230 AT3G54940.3 36.139 202 116 3 51 243 51 248 8.42e-36 132
Msa1174230 AT4G01610.1 28.692 237 129 11 141 342 103 334 2.90e-12 67.8

Find 107 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAATTTGCAACAAATTT+TGG 0.101082 8_1:-5312060 None:intergenic
CAAAATTTGTTGCAAATTAT+TGG 0.108351 8_1:+5312061 Msa1174230:three_prime_UTR
CTCATTGATATACTTAAAAT+TGG 0.205591 8_1:-5310130 None:intergenic
TGTAGTGCTAGCATGGAATT+TGG 0.210591 8_1:+5311803 Msa1174230:three_prime_UTR
TATTGACAACCTTCTGGTTT+TGG 0.238326 8_1:+5311051 Msa1174230:CDS
CCTATCAGCACAAGAAATTA+TGG 0.278118 8_1:+5310753 Msa1174230:CDS
CGGTGAATGGTGAAGACTAT+TGG 0.304070 8_1:+5311547 Msa1174230:CDS
GTTATTGAAGATTGGCCTTA+TGG 0.314718 8_1:+5311633 Msa1174230:CDS
CTTAGAAAAGGGAAACTAAA+TGG 0.315033 8_1:-5311927 None:intergenic
TTTACTTTAATGCATTTGGC+TGG 0.318534 8_1:+5310812 Msa1174230:CDS
TTTGGCTGGGTTATTGAAAA+TGG 0.328155 8_1:+5310826 Msa1174230:CDS
GTTACCAATGTTTGATCTCT+TGG 0.334563 8_1:-5309865 None:intergenic
CCATAATTTCTTGTGCTGAT+AGG 0.338269 8_1:-5310753 None:intergenic
CGTGCTCCTTCTTCCACAAT+TGG 0.339247 8_1:-5310050 None:intergenic
ACAACCTCTTAGTGTGAGTT+TGG 0.347332 8_1:+5311111 Msa1174230:CDS
CATCTCTATCTTTGGTAAGT+AGG 0.351412 8_1:-5310238 None:intergenic
TGTTAGTATTGACAACCTTC+TGG 0.352494 8_1:+5311045 Msa1174230:CDS
GTAGTGCTAGCATGGAATTT+GGG 0.355855 8_1:+5311804 Msa1174230:three_prime_UTR
ACCTTCCCACTTCTGTAGAT+TGG 0.361626 8_1:+5310316 Msa1174230:CDS
AAGGAGCTGTGACTGAAGTT+AGG 0.364375 8_1:+5310346 Msa1174230:CDS
CATTGGGCATTCTCAGTCAC+TGG 0.368149 8_1:+5310685 Msa1174230:CDS
AATGTTTGATCTCTTGGTCT+TGG 0.369653 8_1:-5309859 None:intergenic
AAAGGAATGTTATTGAAGAT+TGG 0.377330 8_1:+5311625 Msa1174230:CDS
TTTAAATATCTCAAATCTCT+TGG 0.377666 8_1:-5310106 None:intergenic
TGACTAAAATAGGGAGTCTA+TGG 0.386085 8_1:+5311459 Msa1174230:intron
TCTCATAATATATATAATAA+TGG 0.390953 8_1:+5311878 Msa1174230:three_prime_UTR
TCTGTAGATTGGAGGGAAAA+AGG 0.392044 8_1:+5310327 Msa1174230:CDS
AAACTCATGGGGAAAAGATT+GGG 0.397399 8_1:+5311578 Msa1174230:CDS
AGTACTAGTACATACATAAA+GGG 0.400009 8_1:-5311852 None:intergenic
TAGTACTAGTACATACATAA+AGG 0.400483 8_1:-5311853 None:intergenic
TCCATGCTAGCACTACAATA+TGG 0.402696 8_1:-5311797 None:intergenic
GGAATCTGCATCTCTATCTT+TGG 0.403742 8_1:-5310246 None:intergenic
AAGGTTACTTGTTTATCAAA+AGG 0.408095 8_1:+5311607 Msa1174230:CDS
GGACTGTGACCCTGCTAGTA+AGG 0.414218 8_1:+5310774 Msa1174230:CDS
GGCAAATGAAAGACATGTAA+TGG 0.429471 8_1:-5309950 None:intergenic
TCAGTCACTGGGGCAATTGA+AGG 0.431508 8_1:+5310697 Msa1174230:CDS
TCAAGGAATGCAAATCTTGT+TGG 0.438289 8_1:+5311504 Msa1174230:CDS
AAAACTCATGGGGAAAAGAT+TGG 0.442756 8_1:+5311577 Msa1174230:CDS
AAATCTTACGACAATTTCCT+TGG 0.443422 8_1:-5310371 None:intergenic
TTCCCTCCAATCGGGACAAT+GGG 0.454262 8_1:+5310265 Msa1174230:CDS
ATCTTCAGCCATGTAGTGGT+TGG 0.459545 8_1:+5311704 Msa1174230:exon
GCTTAGAGAAACCGATAGAT+AGG 0.462516 8_1:-5311770 None:intergenic
TCTAATCGTGGGTTATGATT+CGG 0.463790 8_1:+5311527 Msa1174230:CDS
ACCGATAGATAGGTCTCAAA+AGG 0.478652 8_1:-5311760 None:intergenic
AGGAGCTGTGACTGAAGTTA+GGG 0.480944 8_1:+5310347 Msa1174230:CDS
TTACACCAGCATAGAATTGA+AGG 0.485435 8_1:-5311144 None:intergenic
AAGCTTCCCATTGTCCCGAT+TGG 0.485909 8_1:-5310271 None:intergenic
AGTGTGAGTTTGGATGCAAC+TGG 0.487456 8_1:+5311121 Msa1174230:CDS
AGATGCAGATTCCCTCCAAT+CGG 0.487597 8_1:+5310256 Msa1174230:CDS
CCTGCTAGTAAGGGTTGTGC+TGG 0.489644 8_1:+5310784 Msa1174230:CDS
CTTGAAGGAAAATGCAAACA+AGG 0.490268 8_1:+5311021 Msa1174230:intron
GCATCCAAACTCACACTAAG+AGG 0.491176 8_1:-5311115 None:intergenic
CCAGCACAACCCTTACTAGC+AGG 0.492421 8_1:-5310784 None:intergenic
TTACTTTAATGCATTTGGCT+GGG 0.503500 8_1:+5310813 Msa1174230:CDS
GGCTGGGTTATTGAAAATGG+TGG 0.510307 8_1:+5310829 Msa1174230:CDS
CTTCCCATTGTCCCGATTGG+AGG 0.510526 8_1:-5310268 None:intergenic
GCCATATTGTAGTGCTAGCA+TGG 0.511168 8_1:+5311796 Msa1174230:three_prime_UTR
ATTCCCTCCAATCGGGACAA+TGG 0.514126 8_1:+5310264 Msa1174230:CDS
ACTCTTCCAATTGTGGAAGA+AGG 0.517582 8_1:+5310044 Msa1174230:CDS
GGAAAAGATTGGGGAGAGAA+AGG 0.518533 8_1:+5311588 Msa1174230:CDS
GCTAGTAAGGGTTGTGCTGG+AGG 0.520226 8_1:+5310787 Msa1174230:CDS
ACTGGCCTTCAATTCTATGC+TGG 0.521431 8_1:+5311139 Msa1174230:CDS
TTCCCACTTCTGTAGATTGG+AGG 0.523180 8_1:+5310319 Msa1174230:CDS
TTCCCTCCAATCTACAGAAG+TGG 0.526210 8_1:-5310322 None:intergenic
TCCCTCCAATCTACAGAAGT+GGG 0.527833 8_1:-5310321 None:intergenic
AAAGACATGTAATGGAAATG+AGG 0.531576 8_1:-5309942 None:intergenic
TGTTTGAACTCTTCCAATTG+TGG 0.531957 8_1:+5310037 Msa1174230:CDS
CTTTATCTTCAGCCATGTAG+TGG 0.532318 8_1:+5311700 Msa1174230:CDS
TTGATTGCACATACACCATA+AGG 0.533070 8_1:-5311648 None:intergenic
GTGGGTTATGATTCGGTGAA+TGG 0.534697 8_1:+5311534 Msa1174230:CDS
TGCTCTAACCAACCACTACA+TGG 0.537247 8_1:-5311712 None:intergenic
GATGCAGATTCCCTCCAATC+GGG 0.537566 8_1:+5310257 Msa1174230:CDS
TTCCCATTGTCCCGATTGGA+GGG 0.544474 8_1:-5310267 None:intergenic
GCTGGGTTATTGAAAATGGT+GGG 0.551387 8_1:+5310830 Msa1174230:CDS
AATCTTGTTGGTCTAATCGT+GGG 0.553988 8_1:+5311516 Msa1174230:CDS
TCCCACTTCTGTAGATTGGA+GGG 0.556871 8_1:+5310320 Msa1174230:CDS
TTCAAACACTTCTTCATCAG+AGG 0.560590 8_1:-5310022 None:intergenic
AATTTCTAGCCATGGCAAGT+TGG 0.565364 8_1:+5309990 Msa1174230:CDS
GACTGTGACCCTGCTAGTAA+GGG 0.569928 8_1:+5310775 Msa1174230:CDS
ATTGGGCATTCTCAGTCACT+GGG 0.573858 8_1:+5310686 Msa1174230:CDS
AAATCTTGTTGGTCTAATCG+TGG 0.581439 8_1:+5311515 Msa1174230:CDS
CAGAATGAACTTTGTGATGT+GGG 0.582146 8_1:-5309908 None:intergenic
TAGTGCTAGCATGGAATTTG+GGG 0.591842 8_1:+5311805 Msa1174230:three_prime_UTR
GGACTAAACAAAATAGTCAC+GGG 0.593846 8_1:+5310718 Msa1174230:CDS
AAAACTTGTCCAACTTGCCA+TGG 0.594424 8_1:-5309999 None:intergenic
GAGTACTCAATTTCTAGCCA+TGG 0.600592 8_1:+5309982 Msa1174230:CDS
AATTGTGGAAGAAGGAGCAC+GGG 0.602772 8_1:+5310052 Msa1174230:CDS
CTAAAATAGGGAGTCTATGG+TGG 0.604269 8_1:+5311462 Msa1174230:intron
CAATTGTGGAAGAAGGAGCA+CGG 0.616767 8_1:+5310051 Msa1174230:CDS
ACAGAATGAACTTTGTGATG+TGG 0.621850 8_1:-5309909 None:intergenic
AGGACTAAACAAAATAGTCA+CGG 0.622654 8_1:+5310717 Msa1174230:CDS
GTGACTGAAGTTAGGGACCA+AGG 0.628455 8_1:+5310354 Msa1174230:CDS
AACTCATGGGGAAAAGATTG+GGG 0.629466 8_1:+5311579 Msa1174230:CDS
CATAATATATATAATAATGG+TGG 0.629674 8_1:+5311881 Msa1174230:three_prime_UTR
TCCAATCTACAGAAGTGGGA+AGG 0.633136 8_1:-5310317 None:intergenic
CAGCACAACCCTTACTAGCA+GGG 0.633326 8_1:-5310783 None:intergenic
CTGATCCATCCAAAACCAGA+AGG 0.636040 8_1:-5311060 None:intergenic
TGTGCAATCAATGCTGCGGT+TGG 0.646120 8_1:+5311660 Msa1174230:CDS
GTACTAGTACATACATAAAG+GGG 0.652331 8_1:-5311851 None:intergenic
CAGTGACTGAGAATGCCCAA+TGG 0.662774 8_1:-5310684 None:intergenic
AATTGAGTACTCACTAGACA+AGG 0.669581 8_1:-5309971 None:intergenic
AGACTATGCCAATTCAGAGG+AGG 0.671634 8_1:+5310077 Msa1174230:CDS
GCGAGACTATGCCAATTCAG+AGG 0.673652 8_1:+5310074 Msa1174230:CDS
GTTTGCTGATATGAGTCCTG+AGG 0.681956 8_1:+5310203 Msa1174230:CDS
AAGACCAAGAGATCAAACAT+TGG 0.686288 8_1:+5309861 Msa1174230:five_prime_UTR
TTGGGCATTCTCAGTCACTG+GGG 0.757924 8_1:+5310687 Msa1174230:CDS
TGTATGTGCAATCAATGCTG+CGG 0.774207 8_1:+5311656 Msa1174230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTCATAAACATATAT+AGG - chr8_1:5310448-5310467 None:intergenic 10.0%
!! AAAAAAAACATATAATTTGA+TGG - chr8_1:5311001-5311020 None:intergenic 10.0%
!!! AAATTTTTAAAACATTAACT+TGG + chr8_1:5311275-5311294 Msa1174230:intron 10.0%
!! TCTCATAATATATATAATAA+TGG + chr8_1:5311878-5311897 Msa1174230:three_prime_UTR 10.0%
!! ATAAAAATATACTTAGAAAA+GGG - chr8_1:5311941-5311960 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG - chr8_1:5311942-5311961 None:intergenic 10.0%
!! TTAAATTCATAAACATATAT+AGG - chr8_1:5310448-5310467 None:intergenic 10.0%
!! AAAAAAAACATATAATTTGA+TGG - chr8_1:5311001-5311020 None:intergenic 10.0%
!!! AAATTTTTAAAACATTAACT+TGG + chr8_1:5311275-5311294 Msa1174230:intron 10.0%
!! TCTCATAATATATATAATAA+TGG + chr8_1:5311878-5311897 Msa1174230:three_prime_UTR 10.0%
!! ATAAAAATATACTTAGAAAA+GGG - chr8_1:5311941-5311960 None:intergenic 10.0%
!! TATAAAAATATACTTAGAAA+AGG - chr8_1:5311942-5311961 None:intergenic 10.0%
!! TGAAAATTACTAATAAAGAA+TGG - chr8_1:5310410-5310429 None:intergenic 15.0%
!!! AATATACAAGTGAATTTTTA+AGG + chr8_1:5310556-5310575 Msa1174230:intron 15.0%
!!! TAATAATCCATATATTTTCT+TGG + chr8_1:5310627-5310646 Msa1174230:intron 15.0%
!!! TTATATGTTTTTTTTCTTGA+AGG + chr8_1:5311006-5311025 Msa1174230:intron 15.0%
!! CATAATATATATAATAATGG+TGG + chr8_1:5311881-5311900 Msa1174230:three_prime_UTR 15.0%
!! TGAAAATTACTAATAAAGAA+TGG - chr8_1:5310410-5310429 None:intergenic 15.0%
!!! AATATACAAGTGAATTTTTA+AGG + chr8_1:5310556-5310575 Msa1174230:intron 15.0%
!!! TAATAATCCATATATTTTCT+TGG + chr8_1:5310627-5310646 Msa1174230:intron 15.0%
!!! TTATATGTTTTTTTTCTTGA+AGG + chr8_1:5311006-5311025 Msa1174230:intron 15.0%
!! CATAATATATATAATAATGG+TGG + chr8_1:5311881-5311900 Msa1174230:three_prime_UTR 15.0%
!! TTTAAATATCTCAAATCTCT+TGG - chr8_1:5310109-5310128 None:intergenic 20.0%
!! CTCATTGATATACTTAAAAT+TGG - chr8_1:5310133-5310152 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG + chr8_1:5310476-5310495 Msa1174230:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG - chr8_1:5310481-5310500 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG - chr8_1:5310637-5310656 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG + chr8_1:5310871-5310890 Msa1174230:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG - chr8_1:5310933-5310952 None:intergenic 20.0%
!!! TGCACTTAAGAAATTTTTTT+AGG + chr8_1:5311300-5311319 Msa1174230:intron 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG + chr8_1:5311449-5311468 Msa1174230:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG + chr8_1:5311450-5311469 Msa1174230:intron 20.0%
!! TTTAAATATCTCAAATCTCT+TGG - chr8_1:5310109-5310128 None:intergenic 20.0%
!! CTCATTGATATACTTAAAAT+TGG - chr8_1:5310133-5310152 None:intergenic 20.0%
!!! TACCTTTAGAAAGTATATAT+AGG + chr8_1:5310476-5310495 Msa1174230:intron 20.0%
!! TTCCTATATATACTTTCTAA+AGG - chr8_1:5310481-5310500 None:intergenic 20.0%
!! AATAAGTCCAAGAAAATATA+TGG - chr8_1:5310637-5310656 None:intergenic 20.0%
!!! TATCCTTATTTAGCTAAAAA+TGG + chr8_1:5310871-5310890 Msa1174230:CDS 20.0%
!! TTAGAAAAGACAAATAGTTA+AGG - chr8_1:5310933-5310952 None:intergenic 20.0%
!!! TGCACTTAAGAAATTTTTTT+AGG + chr8_1:5311300-5311319 Msa1174230:intron 20.0%
!!! ATTGTTGTTTTGACTAAAAT+AGG + chr8_1:5311449-5311468 Msa1174230:intron 20.0%
!!! TTGTTGTTTTGACTAAAATA+GGG + chr8_1:5311450-5311469 Msa1174230:intron 20.0%
!! GGTTTTTACTTTAATGCATT+TGG + chr8_1:5310808-5310827 Msa1174230:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG - chr8_1:5310877-5310896 None:intergenic 25.0%
!! AAAGTCAATTGGTTTAACTA+TGG - chr8_1:5311247-5311266 None:intergenic 25.0%
! TTTGACTATTGAAAGTCAAT+TGG - chr8_1:5311258-5311277 None:intergenic 25.0%
! AAGGTTACTTGTTTATCAAA+AGG + chr8_1:5311607-5311626 Msa1174230:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG + chr8_1:5311625-5311644 Msa1174230:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG - chr8_1:5311689-5311708 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG - chr8_1:5311855-5311874 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG - chr8_1:5311856-5311875 None:intergenic 25.0%
!! GGTTTTTACTTTAATGCATT+TGG + chr8_1:5310808-5310827 Msa1174230:CDS 25.0%
!!! GTACCATTTTTAGCTAAATA+AGG - chr8_1:5310877-5310896 None:intergenic 25.0%
!! AAAGTCAATTGGTTTAACTA+TGG - chr8_1:5311247-5311266 None:intergenic 25.0%
! TTTGACTATTGAAAGTCAAT+TGG - chr8_1:5311258-5311277 None:intergenic 25.0%
! AAGGTTACTTGTTTATCAAA+AGG + chr8_1:5311607-5311626 Msa1174230:CDS 25.0%
! AAAGGAATGTTATTGAAGAT+TGG + chr8_1:5311625-5311644 Msa1174230:CDS 25.0%
!!! AAGATAAAGCTGTTTTGATT+GGG - chr8_1:5311689-5311708 None:intergenic 25.0%
! AGTACTAGTACATACATAAA+GGG - chr8_1:5311855-5311874 None:intergenic 25.0%
! TAGTACTAGTACATACATAA+AGG - chr8_1:5311856-5311875 None:intergenic 25.0%
! AAAGACATGTAATGGAAATG+AGG - chr8_1:5309945-5309964 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG - chr8_1:5310374-5310393 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG + chr8_1:5310669-5310688 Msa1174230:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG + chr8_1:5310717-5310736 Msa1174230:CDS 30.0%
TTTACTTTAATGCATTTGGC+TGG + chr8_1:5310812-5310831 Msa1174230:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG + chr8_1:5310813-5310832 Msa1174230:CDS 30.0%
! GTGTCGATATATCTTTCAAA+AGG + chr8_1:5311346-5311365 Msa1174230:intron 30.0%
ATCTTTCAAAAGGTTGAATC+TGG + chr8_1:5311356-5311375 Msa1174230:intron 30.0%
AGAACTGCAAAAAAGATTCA+AGG + chr8_1:5311487-5311506 Msa1174230:CDS 30.0%
ATTGGATTGTGAAAAACTCA+TGG + chr8_1:5311565-5311584 Msa1174230:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG + chr8_1:5311566-5311585 Msa1174230:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG - chr8_1:5311690-5311709 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG - chr8_1:5311854-5311873 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG - chr8_1:5311930-5311949 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG - chr8_1:5312058-5312077 None:intergenic 30.0%
! AAAGACATGTAATGGAAATG+AGG - chr8_1:5309945-5309964 None:intergenic 30.0%
AAATCTTACGACAATTTCCT+TGG - chr8_1:5310374-5310393 None:intergenic 30.0%
!! TTATTTTCTAGAGAGCCATT+GGG + chr8_1:5310669-5310688 Msa1174230:intron 30.0%
AGGACTAAACAAAATAGTCA+CGG + chr8_1:5310717-5310736 Msa1174230:CDS 30.0%
TTTACTTTAATGCATTTGGC+TGG + chr8_1:5310812-5310831 Msa1174230:CDS 30.0%
TTACTTTAATGCATTTGGCT+GGG + chr8_1:5310813-5310832 Msa1174230:CDS 30.0%
! GTGTCGATATATCTTTCAAA+AGG + chr8_1:5311346-5311365 Msa1174230:intron 30.0%
ATCTTTCAAAAGGTTGAATC+TGG + chr8_1:5311356-5311375 Msa1174230:intron 30.0%
AGAACTGCAAAAAAGATTCA+AGG + chr8_1:5311487-5311506 Msa1174230:CDS 30.0%
ATTGGATTGTGAAAAACTCA+TGG + chr8_1:5311565-5311584 Msa1174230:CDS 30.0%
TTGGATTGTGAAAAACTCAT+GGG + chr8_1:5311566-5311585 Msa1174230:CDS 30.0%
!!! GAAGATAAAGCTGTTTTGAT+TGG - chr8_1:5311690-5311709 None:intergenic 30.0%
GTACTAGTACATACATAAAG+GGG - chr8_1:5311854-5311873 None:intergenic 30.0%
CTTAGAAAAGGGAAACTAAA+TGG - chr8_1:5311930-5311949 None:intergenic 30.0%
!!! ATTTGCAACAAATTTTGGCT+CGG - chr8_1:5312058-5312077 None:intergenic 30.0%
AATGTTTGATCTCTTGGTCT+TGG - chr8_1:5309862-5309881 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG + chr8_1:5309861-5309880 Msa1174230:five_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG - chr8_1:5309868-5309887 None:intergenic 35.0%
CAGAATGAACTTTGTGATGT+GGG - chr8_1:5309911-5309930 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG - chr8_1:5309912-5309931 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG - chr8_1:5309953-5309972 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG - chr8_1:5309974-5309993 None:intergenic 35.0%
TTCAAACACTTCTTCATCAG+AGG - chr8_1:5310025-5310044 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG + chr8_1:5310037-5310056 Msa1174230:CDS 35.0%
! TAGGTTTTACTAAACTCCTC+AGG - chr8_1:5310222-5310241 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG - chr8_1:5310241-5310260 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG + chr8_1:5310668-5310687 Msa1174230:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG + chr8_1:5310718-5310737 Msa1174230:CDS 35.0%
! CCATAATTTCTTGTGCTGAT+AGG - chr8_1:5310756-5310775 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG + chr8_1:5310753-5310772 Msa1174230:CDS 35.0%
TTTGGCTGGGTTATTGAAAA+TGG + chr8_1:5310826-5310845 Msa1174230:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG + chr8_1:5310882-5310901 Msa1174230:CDS 35.0%
! CATTCTAACATCTTAGCTTG+TGG + chr8_1:5310973-5310992 Msa1174230:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG + chr8_1:5311021-5311040 Msa1174230:intron 35.0%
!! TGTTAGTATTGACAACCTTC+TGG + chr8_1:5311045-5311064 Msa1174230:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG + chr8_1:5311051-5311070 Msa1174230:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG - chr8_1:5311147-5311166 None:intergenic 35.0%
TAAAGTTTAGTGCTAATGCG+AGG + chr8_1:5311324-5311343 Msa1174230:intron 35.0%
TGACTAAAATAGGGAGTCTA+TGG + chr8_1:5311459-5311478 Msa1174230:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG + chr8_1:5311504-5311523 Msa1174230:CDS 35.0%
! AAATCTTGTTGGTCTAATCG+TGG + chr8_1:5311515-5311534 Msa1174230:CDS 35.0%
! AATCTTGTTGGTCTAATCGT+GGG + chr8_1:5311516-5311535 Msa1174230:CDS 35.0%
! TCTAATCGTGGGTTATGATT+CGG + chr8_1:5311527-5311546 Msa1174230:CDS 35.0%
TGGATTGTGAAAAACTCATG+GGG + chr8_1:5311567-5311586 Msa1174230:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG + chr8_1:5311577-5311596 Msa1174230:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG + chr8_1:5311578-5311597 Msa1174230:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG + chr8_1:5311633-5311652 Msa1174230:CDS 35.0%
TTGATTGCACATACACCATA+AGG - chr8_1:5311651-5311670 None:intergenic 35.0%
!!! TCCTTTTGAGACCTATCTAT+CGG + chr8_1:5311759-5311778 Msa1174230:three_prime_UTR 35.0%
! GTCTACTCATTTTGTATGCT+GGG - chr8_1:5312035-5312054 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG - chr8_1:5312057-5312076 None:intergenic 35.0%
AATGTTTGATCTCTTGGTCT+TGG - chr8_1:5309862-5309881 None:intergenic 35.0%
AAGACCAAGAGATCAAACAT+TGG + chr8_1:5309861-5309880 Msa1174230:five_prime_UTR 35.0%
GTTACCAATGTTTGATCTCT+TGG - chr8_1:5309868-5309887 None:intergenic 35.0%
CAGAATGAACTTTGTGATGT+GGG - chr8_1:5309911-5309930 None:intergenic 35.0%
ACAGAATGAACTTTGTGATG+TGG - chr8_1:5309912-5309931 None:intergenic 35.0%
GGCAAATGAAAGACATGTAA+TGG - chr8_1:5309953-5309972 None:intergenic 35.0%
AATTGAGTACTCACTAGACA+AGG - chr8_1:5309974-5309993 None:intergenic 35.0%
TTCAAACACTTCTTCATCAG+AGG - chr8_1:5310025-5310044 None:intergenic 35.0%
TGTTTGAACTCTTCCAATTG+TGG + chr8_1:5310037-5310056 Msa1174230:CDS 35.0%
! TAGGTTTTACTAAACTCCTC+AGG - chr8_1:5310222-5310241 None:intergenic 35.0%
CATCTCTATCTTTGGTAAGT+AGG - chr8_1:5310241-5310260 None:intergenic 35.0%
!! GTTATTTTCTAGAGAGCCAT+TGG + chr8_1:5310668-5310687 Msa1174230:intron 35.0%
GGACTAAACAAAATAGTCAC+GGG + chr8_1:5310718-5310737 Msa1174230:CDS 35.0%
! CCATAATTTCTTGTGCTGAT+AGG - chr8_1:5310756-5310775 None:intergenic 35.0%
CCTATCAGCACAAGAAATTA+TGG + chr8_1:5310753-5310772 Msa1174230:CDS 35.0%
TTTGGCTGGGTTATTGAAAA+TGG + chr8_1:5310826-5310845 Msa1174230:CDS 35.0%
AGCTAAAAATGGTACTTGCA+AGG + chr8_1:5310882-5310901 Msa1174230:CDS 35.0%
! CATTCTAACATCTTAGCTTG+TGG + chr8_1:5310973-5310992 Msa1174230:intron 35.0%
CTTGAAGGAAAATGCAAACA+AGG + chr8_1:5311021-5311040 Msa1174230:intron 35.0%
!! TGTTAGTATTGACAACCTTC+TGG + chr8_1:5311045-5311064 Msa1174230:CDS 35.0%
!!! TATTGACAACCTTCTGGTTT+TGG + chr8_1:5311051-5311070 Msa1174230:CDS 35.0%
TTACACCAGCATAGAATTGA+AGG - chr8_1:5311147-5311166 None:intergenic 35.0%
TAAAGTTTAGTGCTAATGCG+AGG + chr8_1:5311324-5311343 Msa1174230:intron 35.0%
TGACTAAAATAGGGAGTCTA+TGG + chr8_1:5311459-5311478 Msa1174230:intron 35.0%
TCAAGGAATGCAAATCTTGT+TGG + chr8_1:5311504-5311523 Msa1174230:CDS 35.0%
! AAATCTTGTTGGTCTAATCG+TGG + chr8_1:5311515-5311534 Msa1174230:CDS 35.0%
! AATCTTGTTGGTCTAATCGT+GGG + chr8_1:5311516-5311535 Msa1174230:CDS 35.0%
! TCTAATCGTGGGTTATGATT+CGG + chr8_1:5311527-5311546 Msa1174230:CDS 35.0%
TGGATTGTGAAAAACTCATG+GGG + chr8_1:5311567-5311586 Msa1174230:CDS 35.0%
AAAACTCATGGGGAAAAGAT+TGG + chr8_1:5311577-5311596 Msa1174230:CDS 35.0%
AAACTCATGGGGAAAAGATT+GGG + chr8_1:5311578-5311597 Msa1174230:CDS 35.0%
!! GTTATTGAAGATTGGCCTTA+TGG + chr8_1:5311633-5311652 Msa1174230:CDS 35.0%
TTGATTGCACATACACCATA+AGG - chr8_1:5311651-5311670 None:intergenic 35.0%
!!! TCCTTTTGAGACCTATCTAT+CGG + chr8_1:5311759-5311778 Msa1174230:three_prime_UTR 35.0%
! GTCTACTCATTTTGTATGCT+GGG - chr8_1:5312035-5312054 None:intergenic 35.0%
!!! TTTGCAACAAATTTTGGCTC+GGG - chr8_1:5312057-5312076 None:intergenic 35.0%
!! GAGTACTCAATTTCTAGCCA+TGG + chr8_1:5309982-5310001 Msa1174230:CDS 40.0%
!! AATTTCTAGCCATGGCAAGT+TGG + chr8_1:5309990-5310009 Msa1174230:CDS 40.0%
AAAACTTGTCCAACTTGCCA+TGG - chr8_1:5310002-5310021 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG + chr8_1:5310044-5310063 Msa1174230:CDS 40.0%
GGAATCTGCATCTCTATCTT+TGG - chr8_1:5310249-5310268 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG + chr8_1:5310327-5310346 Msa1174230:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG + chr8_1:5310830-5310849 Msa1174230:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG + chr8_1:5311111-5311130 Msa1174230:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG + chr8_1:5311462-5311481 Msa1174230:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG + chr8_1:5311579-5311598 Msa1174230:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG + chr8_1:5311656-5311675 Msa1174230:CDS 40.0%
CTTTATCTTCAGCCATGTAG+TGG + chr8_1:5311700-5311719 Msa1174230:CDS 40.0%
ACCGATAGATAGGTCTCAAA+AGG - chr8_1:5311763-5311782 None:intergenic 40.0%
GCTTAGAGAAACCGATAGAT+AGG - chr8_1:5311773-5311792 None:intergenic 40.0%
TCCATGCTAGCACTACAATA+TGG - chr8_1:5311800-5311819 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG + chr8_1:5311803-5311822 Msa1174230:three_prime_UTR 40.0%
GTAGTGCTAGCATGGAATTT+GGG + chr8_1:5311804-5311823 Msa1174230:three_prime_UTR 40.0%
TAGTGCTAGCATGGAATTTG+GGG + chr8_1:5311805-5311824 Msa1174230:three_prime_UTR 40.0%
!!! GAGCTAGTTTGCTCATTTTC+AGG - chr8_1:5311987-5312006 None:intergenic 40.0%
! GGTCTACTCATTTTGTATGC+TGG - chr8_1:5312036-5312055 None:intergenic 40.0%
!! GAGTACTCAATTTCTAGCCA+TGG + chr8_1:5309982-5310001 Msa1174230:CDS 40.0%
!! AATTTCTAGCCATGGCAAGT+TGG + chr8_1:5309990-5310009 Msa1174230:CDS 40.0%
AAAACTTGTCCAACTTGCCA+TGG - chr8_1:5310002-5310021 None:intergenic 40.0%
ACTCTTCCAATTGTGGAAGA+AGG + chr8_1:5310044-5310063 Msa1174230:CDS 40.0%
GGAATCTGCATCTCTATCTT+TGG - chr8_1:5310249-5310268 None:intergenic 40.0%
TCTGTAGATTGGAGGGAAAA+AGG + chr8_1:5310327-5310346 Msa1174230:CDS 40.0%
GCTGGGTTATTGAAAATGGT+GGG + chr8_1:5310830-5310849 Msa1174230:CDS 40.0%
ACAACCTCTTAGTGTGAGTT+TGG + chr8_1:5311111-5311130 Msa1174230:CDS 40.0%
CTAAAATAGGGAGTCTATGG+TGG + chr8_1:5311462-5311481 Msa1174230:intron 40.0%
AACTCATGGGGAAAAGATTG+GGG + chr8_1:5311579-5311598 Msa1174230:CDS 40.0%
TGTATGTGCAATCAATGCTG+CGG + chr8_1:5311656-5311675 Msa1174230:CDS 40.0%
CTTTATCTTCAGCCATGTAG+TGG + chr8_1:5311700-5311719 Msa1174230:CDS 40.0%
ACCGATAGATAGGTCTCAAA+AGG - chr8_1:5311763-5311782 None:intergenic 40.0%
GCTTAGAGAAACCGATAGAT+AGG - chr8_1:5311773-5311792 None:intergenic 40.0%
TCCATGCTAGCACTACAATA+TGG - chr8_1:5311800-5311819 None:intergenic 40.0%
TGTAGTGCTAGCATGGAATT+TGG + chr8_1:5311803-5311822 Msa1174230:three_prime_UTR 40.0%
GTAGTGCTAGCATGGAATTT+GGG + chr8_1:5311804-5311823 Msa1174230:three_prime_UTR 40.0%
TAGTGCTAGCATGGAATTTG+GGG + chr8_1:5311805-5311824 Msa1174230:three_prime_UTR 40.0%
!!! GAGCTAGTTTGCTCATTTTC+AGG - chr8_1:5311987-5312006 None:intergenic 40.0%
! GGTCTACTCATTTTGTATGC+TGG - chr8_1:5312036-5312055 None:intergenic 40.0%
CAATTGTGGAAGAAGGAGCA+CGG + chr8_1:5310051-5310070 Msa1174230:CDS 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG + chr8_1:5310052-5310071 Msa1174230:CDS 45.0%
AGACTATGCCAATTCAGAGG+AGG + chr8_1:5310077-5310096 Msa1174230:CDS 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG - chr8_1:5310088-5310107 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG + chr8_1:5310203-5310222 Msa1174230:CDS 45.0%
AGATGCAGATTCCCTCCAAT+CGG + chr8_1:5310256-5310275 Msa1174230:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG + chr8_1:5310316-5310335 Msa1174230:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG - chr8_1:5310320-5310339 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG + chr8_1:5310319-5310338 Msa1174230:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG + chr8_1:5310320-5310339 Msa1174230:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG - chr8_1:5310324-5310343 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG - chr8_1:5310325-5310344 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG + chr8_1:5310346-5310365 Msa1174230:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG + chr8_1:5310347-5310366 Msa1174230:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG + chr8_1:5310686-5310705 Msa1174230:CDS 45.0%
GGCTGGGTTATTGAAAATGG+TGG + chr8_1:5310829-5310848 Msa1174230:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG + chr8_1:5311055-5311074 Msa1174230:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG - chr8_1:5311063-5311082 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG - chr8_1:5311118-5311137 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG + chr8_1:5311121-5311140 Msa1174230:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG + chr8_1:5311139-5311158 Msa1174230:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG + chr8_1:5311534-5311553 Msa1174230:CDS 45.0%
CGGTGAATGGTGAAGACTAT+TGG + chr8_1:5311547-5311566 Msa1174230:CDS 45.0%
GGAAAAGATTGGGGAGAGAA+AGG + chr8_1:5311588-5311607 Msa1174230:CDS 45.0%
ATCTTCAGCCATGTAGTGGT+TGG + chr8_1:5311704-5311723 Msa1174230:exon 45.0%
TGCTCTAACCAACCACTACA+TGG - chr8_1:5311715-5311734 None:intergenic 45.0%
GCCATATTGTAGTGCTAGCA+TGG + chr8_1:5311796-5311815 Msa1174230:three_prime_UTR 45.0%
CAATTGTGGAAGAAGGAGCA+CGG + chr8_1:5310051-5310070 Msa1174230:CDS 45.0%
! AATTGTGGAAGAAGGAGCAC+GGG + chr8_1:5310052-5310071 Msa1174230:CDS 45.0%
AGACTATGCCAATTCAGAGG+AGG + chr8_1:5310077-5310096 Msa1174230:CDS 45.0%
! GGCATTTTCCTCCTCTGAAT+TGG - chr8_1:5310088-5310107 None:intergenic 45.0%
! GTTTGCTGATATGAGTCCTG+AGG + chr8_1:5310203-5310222 Msa1174230:CDS 45.0%
AGATGCAGATTCCCTCCAAT+CGG + chr8_1:5310256-5310275 Msa1174230:CDS 45.0%
ACCTTCCCACTTCTGTAGAT+TGG + chr8_1:5310316-5310335 Msa1174230:CDS 45.0%
TCCAATCTACAGAAGTGGGA+AGG - chr8_1:5310320-5310339 None:intergenic 45.0%
TTCCCACTTCTGTAGATTGG+AGG + chr8_1:5310319-5310338 Msa1174230:CDS 45.0%
TCCCACTTCTGTAGATTGGA+GGG + chr8_1:5310320-5310339 Msa1174230:CDS 45.0%
TCCCTCCAATCTACAGAAGT+GGG - chr8_1:5310324-5310343 None:intergenic 45.0%
TTCCCTCCAATCTACAGAAG+TGG - chr8_1:5310325-5310344 None:intergenic 45.0%
AAGGAGCTGTGACTGAAGTT+AGG + chr8_1:5310346-5310365 Msa1174230:CDS 45.0%
AGGAGCTGTGACTGAAGTTA+GGG + chr8_1:5310347-5310366 Msa1174230:CDS 45.0%
ATTGGGCATTCTCAGTCACT+GGG + chr8_1:5310686-5310705 Msa1174230:CDS 45.0%
GGCTGGGTTATTGAAAATGG+TGG + chr8_1:5310829-5310848 Msa1174230:CDS 45.0%
!!! GACAACCTTCTGGTTTTGGA+TGG + chr8_1:5311055-5311074 Msa1174230:CDS 45.0%
CTGATCCATCCAAAACCAGA+AGG - chr8_1:5311063-5311082 None:intergenic 45.0%
GCATCCAAACTCACACTAAG+AGG - chr8_1:5311118-5311137 None:intergenic 45.0%
AGTGTGAGTTTGGATGCAAC+TGG + chr8_1:5311121-5311140 Msa1174230:CDS 45.0%
!! ACTGGCCTTCAATTCTATGC+TGG + chr8_1:5311139-5311158 Msa1174230:CDS 45.0%
!! GTGGGTTATGATTCGGTGAA+TGG + chr8_1:5311534-5311553 Msa1174230:CDS 45.0%
CGGTGAATGGTGAAGACTAT+TGG + chr8_1:5311547-5311566 Msa1174230:CDS 45.0%
GGAAAAGATTGGGGAGAGAA+AGG + chr8_1:5311588-5311607 Msa1174230:CDS 45.0%
ATCTTCAGCCATGTAGTGGT+TGG + chr8_1:5311704-5311723 Msa1174230:exon 45.0%
TGCTCTAACCAACCACTACA+TGG - chr8_1:5311715-5311734 None:intergenic 45.0%
GCCATATTGTAGTGCTAGCA+TGG + chr8_1:5311796-5311815 Msa1174230:three_prime_UTR 45.0%
CGTGCTCCTTCTTCCACAAT+TGG - chr8_1:5310053-5310072 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG + chr8_1:5310074-5310093 Msa1174230:CDS 50.0%
GATGCAGATTCCCTCCAATC+GGG + chr8_1:5310257-5310276 Msa1174230:CDS 50.0%
ATTCCCTCCAATCGGGACAA+TGG + chr8_1:5310264-5310283 Msa1174230:CDS 50.0%
TTCCCTCCAATCGGGACAAT+GGG + chr8_1:5310265-5310284 Msa1174230:CDS 50.0%
TTCCCATTGTCCCGATTGGA+GGG - chr8_1:5310270-5310289 None:intergenic 50.0%
AAGCTTCCCATTGTCCCGAT+TGG - chr8_1:5310274-5310293 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG + chr8_1:5310354-5310373 Msa1174230:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG - chr8_1:5310687-5310706 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG + chr8_1:5310685-5310704 Msa1174230:CDS 50.0%
TTGGGCATTCTCAGTCACTG+GGG + chr8_1:5310687-5310706 Msa1174230:CDS 50.0%
TCAGTCACTGGGGCAATTGA+AGG + chr8_1:5310697-5310716 Msa1174230:CDS 50.0%
GACTGTGACCCTGCTAGTAA+GGG + chr8_1:5310775-5310794 Msa1174230:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG - chr8_1:5310786-5310805 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG + chr8_1:5311660-5311679 Msa1174230:CDS 50.0%
CGTGCTCCTTCTTCCACAAT+TGG - chr8_1:5310053-5310072 None:intergenic 50.0%
GCGAGACTATGCCAATTCAG+AGG + chr8_1:5310074-5310093 Msa1174230:CDS 50.0%
GATGCAGATTCCCTCCAATC+GGG + chr8_1:5310257-5310276 Msa1174230:CDS 50.0%
ATTCCCTCCAATCGGGACAA+TGG + chr8_1:5310264-5310283 Msa1174230:CDS 50.0%
TTCCCTCCAATCGGGACAAT+GGG + chr8_1:5310265-5310284 Msa1174230:CDS 50.0%
TTCCCATTGTCCCGATTGGA+GGG - chr8_1:5310270-5310289 None:intergenic 50.0%
AAGCTTCCCATTGTCCCGAT+TGG - chr8_1:5310274-5310293 None:intergenic 50.0%
GTGACTGAAGTTAGGGACCA+AGG + chr8_1:5310354-5310373 Msa1174230:CDS 50.0%
CAGTGACTGAGAATGCCCAA+TGG - chr8_1:5310687-5310706 None:intergenic 50.0%
CATTGGGCATTCTCAGTCAC+TGG + chr8_1:5310685-5310704 Msa1174230:CDS 50.0%
TTGGGCATTCTCAGTCACTG+GGG + chr8_1:5310687-5310706 Msa1174230:CDS 50.0%
TCAGTCACTGGGGCAATTGA+AGG + chr8_1:5310697-5310716 Msa1174230:CDS 50.0%
GACTGTGACCCTGCTAGTAA+GGG + chr8_1:5310775-5310794 Msa1174230:CDS 50.0%
CAGCACAACCCTTACTAGCA+GGG - chr8_1:5310786-5310805 None:intergenic 50.0%
TGTGCAATCAATGCTGCGGT+TGG + chr8_1:5311660-5311679 Msa1174230:CDS 50.0%
CTTCCCATTGTCCCGATTGG+AGG - chr8_1:5310271-5310290 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG + chr8_1:5310774-5310793 Msa1174230:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG - chr8_1:5310787-5310806 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG + chr8_1:5310784-5310803 Msa1174230:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG + chr8_1:5310787-5310806 Msa1174230:CDS 55.0%
CTTCCCATTGTCCCGATTGG+AGG - chr8_1:5310271-5310290 None:intergenic 55.0%
GGACTGTGACCCTGCTAGTA+AGG + chr8_1:5310774-5310793 Msa1174230:CDS 55.0%
CCAGCACAACCCTTACTAGC+AGG - chr8_1:5310787-5310806 None:intergenic 55.0%
CCTGCTAGTAAGGGTTGTGC+TGG + chr8_1:5310784-5310803 Msa1174230:CDS 55.0%
GCTAGTAAGGGTTGTGCTGG+AGG + chr8_1:5310787-5310806 Msa1174230:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5309855 5312081 5309855 ID=Msa1174230;Name=Msa1174230
chr8_1 mRNA 5309855 5312081 5309855 ID=Msa1174230-mRNA-1;Parent=Msa1174230;Name=Msa1174230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=43|1|1|1|1|1|4|362|364
chr8_1 exon 5309855 5310384 5309855 ID=Msa1174230-mRNA-1:exon:1759;Parent=Msa1174230-mRNA-1
chr8_1 exon 5310680 5310903 5310680 ID=Msa1174230-mRNA-1:exon:1760;Parent=Msa1174230-mRNA-1
chr8_1 exon 5311028 5311162 5311028 ID=Msa1174230-mRNA-1:exon:1761;Parent=Msa1174230-mRNA-1
chr8_1 exon 5311471 5312081 5311471 ID=Msa1174230-mRNA-1:exon:1762;Parent=Msa1174230-mRNA-1
chr8_1 five_prime_UTR 5309855 5309897 5309855 ID=Msa1174230-mRNA-1:five_prime_utr;Parent=Msa1174230-mRNA-1
chr8_1 CDS 5309898 5310384 5309898 ID=Msa1174230-mRNA-1:cds;Parent=Msa1174230-mRNA-1
chr8_1 CDS 5310680 5310903 5310680 ID=Msa1174230-mRNA-1:cds;Parent=Msa1174230-mRNA-1
chr8_1 CDS 5311028 5311162 5311028 ID=Msa1174230-mRNA-1:cds;Parent=Msa1174230-mRNA-1
chr8_1 CDS 5311471 5311719 5311471 ID=Msa1174230-mRNA-1:cds;Parent=Msa1174230-mRNA-1
chr8_1 three_prime_UTR 5311720 5312081 5311720 ID=Msa1174230-mRNA-1:three_prime_utr;Parent=Msa1174230-mRNA-1
Gene Sequence

>Msa1174230

ATGATGATATCCCACATCACAAAGTTCATTCTGTCTTTTTTAATCCTCATTTCCATTACATGTCTTTCATTTGCCTTGTCTAGTGAGTACTCAATTTCTAGCCATGGCAAGTTGGACAAGTTTTCCTCTGATGAAGAAGTGTTTGAACTCTTCCAATTGTGGAAGAAGGAGCACGGGCGAGACTATGCCAATTCAGAGGAGGAAAATGCCAAGAGATTTGAGATATTTAAAACCAATTTTAAGTATATCAATGAGATGAATGCAAAGAGAAAATCGCAAACACAACATCGTTTGAGTCTCAACAAGTTTGCTGATATGAGTCCTGAGGAGTTTAGTAAAACCTACTTACCAAAGATAGAGATGCAGATTCCCTCCAATCGGGACAATGGGAAGCTTAGAGATGATGATGATTGTGAAAACCTTCCCACTTCTGTAGATTGGAGGGAAAAAGGAGCTGTGACTGAAGTTAGGGACCAAGGAAATTGTCAGAGCCATTGGGCATTCTCAGTCACTGGGGCAATTGAAGGACTAAACAAAATAGTCACGGGAAATCTTATCAACCTATCAGCACAAGAAATTATGGACTGTGACCCTGCTAGTAAGGGTTGTGCTGGAGGTTTTTACTTTAATGCATTTGGCTGGGTTATTGAAAATGGTGGGATTGATACAGAAGCTAACTATCCTTATTTAGCTAAAAATGGTACTTGCAAGGAAAATGCAAACAAGGTTGTTAGTATTGACAACCTTCTGGTTTTGGATGGATCAGAAGAAGCACTTTTGTGTCGTTCTAGTAAACAACCTCTTAGTGTGAGTTTGGATGCAACTGGCCTTCAATTCTATGCTGGTGGAGTCTATGGTGGTGAGAACTGCAAAAAAGATTCAAGGAATGCAAATCTTGTTGGTCTAATCGTGGGTTATGATTCGGTGAATGGTGAAGACTATTGGATTGTGAAAAACTCATGGGGAAAAGATTGGGGAGAGAAAGGTTACTTGTTTATCAAAAGGAATGTTATTGAAGATTGGCCTTATGGTGTATGTGCAATCAATGCTGCGGTTGGTTACCCAATCAAAACAGCTTTATCTTCAGCCATGTAG
Protein sequence

>Msa1174230

MMISHITKFILSFLILISITCLSFALSSEYSISSHGKLDKFSSDEEVFELFQLWKKEHGRDYANSEEENAKRFEIFKTNFKYINEMNAKRKSQTQHRLSLNKFADMSPEEFSKTYLPKIEMQIPSNRDNGKLRDDDDCENLPTSVDWREKGAVTEVRDQGNCQSHWAFSVTGAIEGLNKIVTGNLINLSAQEIMDCDPASKGCAGGFYFNAFGWVIENGGIDTEANYPYLAKNGTCKENANKVVSIDNLLVLDGSEEALLCRSSKQPLSVSLDATGLQFYAGGVYGGENCKKDSRNANLVGLIVGYDSVNGEDYWIVKNSWGKDWGEKGYLFIKRNVIEDWPYGVCAINAAVGYPIKTALSSAM*