AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002292.t1 MTR_2g010580 94.776 134 7 0 6 139 8 141 7.74e-95 272
MS.gene002292.t1 MTR_4g092540 55.224 134 54 3 7 139 8 136 1.38e-48 155
MS.gene002292.t1 MTR_2g435490 45.055 182 89 6 1 178 1 175 3.31e-48 155
MS.gene002292.t1 MTR_2g010590 48.120 133 63 2 8 139 9 136 1.65e-43 142
MS.gene002292.t1 MTR_2g010600 50.000 126 60 2 17 139 13 138 1.57e-42 140
MS.gene002292.t1 MTR_4g050762 43.195 169 80 5 23 181 19 181 1.67e-42 140
MS.gene002292.t1 MTR_2g012370 43.195 169 80 5 23 181 19 181 1.67e-42 140
MS.gene002292.t1 MTR_2g010650 48.551 138 65 3 7 139 6 142 1.04e-41 138
MS.gene002292.t1 MTR_2g010630 51.613 124 52 4 23 139 20 142 5.35e-39 131
MS.gene002292.t1 MTR_2g010690 41.727 139 70 4 7 139 8 141 8.74e-34 117
MS.gene002292.t1 MTR_2g010670 41.007 139 73 4 9 139 4 141 8.21e-33 115
MS.gene002292.t1 MTR_2g010610 45.763 118 42 2 23 139 19 115 9.65e-32 111
MS.gene002292.t1 MTR_2g010640 42.336 137 69 4 8 139 9 140 1.75e-31 112
MS.gene002292.t1 MTR_2g010700 41.732 127 63 5 23 139 20 145 4.42e-29 105
MS.gene002292.t1 MTR_4g128750 49.558 113 55 2 33 143 41 153 5.05e-29 105
MS.gene002292.t1 MTR_4g092515 50.633 79 38 1 8 86 9 86 6.86e-23 89.0
MS.gene002292.t1 MTR_4g128770 42.105 114 60 3 32 139 70 183 1.82e-22 89.7
MS.gene002292.t1 MTR_1g067290 38.739 111 65 2 32 139 73 183 1.68e-21 87.4
MS.gene002292.t1 MTR_8g078770 34.722 144 79 6 8 141 12 150 3.89e-20 82.8
MS.gene002292.t1 MTR_5g018770 36.207 116 66 5 31 139 46 160 2.05e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002292.t1 AT2G14610 55.039 129 57 1 11 139 11 138 1.08e-48 155
MS.gene002292.t1 AT4G33720 52.857 140 62 2 1 139 4 140 7.70e-48 153
MS.gene002292.t1 AT2G14580 57.391 115 48 1 25 139 25 138 5.87e-47 151
MS.gene002292.t1 AT2G19990 57.658 111 46 1 30 139 42 152 6.71e-46 149
MS.gene002292.t1 AT1G50060 48.592 142 65 3 1 140 4 139 6.11e-41 136
MS.gene002292.t1 AT3G19690 51.667 120 53 2 24 139 20 138 1.08e-39 132
MS.gene002292.t1 AT5G26130 47.183 142 70 3 1 139 4 143 2.42e-39 132
MS.gene002292.t1 AT4G33730 48.855 131 58 2 18 139 19 149 3.84e-37 126
MS.gene002292.t1 AT4G33710 48.305 118 58 2 25 139 26 143 1.06e-33 117
MS.gene002292.t1 AT4G07820 48.276 116 58 2 25 139 24 138 4.36e-32 113
MS.gene002292.t1 AT2G19970 46.218 119 54 3 30 139 35 152 6.24e-32 113
MS.gene002292.t1 AT1G50050 44.366 142 70 4 1 139 4 139 1.18e-30 111
MS.gene002292.t1 AT1G50050 44.366 142 70 4 1 139 4 139 1.34e-30 109
MS.gene002292.t1 AT4G30320 40.714 140 79 2 1 139 1 137 6.06e-30 108
MS.gene002292.t1 AT4G25790 45.946 111 58 2 31 139 76 186 2.42e-29 107
MS.gene002292.t1 AT5G57625 45.872 109 57 2 33 139 75 183 6.11e-28 104
MS.gene002292.t1 AT1G01310 45.946 111 58 2 32 140 87 197 5.47e-27 102
MS.gene002292.t1 AT2G19980 35.429 175 79 7 13 172 8 163 1.63e-25 96.7
MS.gene002292.t1 AT3G09590 37.705 122 73 2 21 139 41 162 5.34e-25 95.9
MS.gene002292.t1 AT5G02730 42.342 111 61 2 32 139 59 169 7.74e-25 96.3
MS.gene002292.t1 AT4G31470 43.243 111 61 2 31 139 52 162 9.79e-25 95.1
MS.gene002292.t1 AT5G66590 41.026 117 63 4 31 141 47 163 2.86e-23 91.7
MS.gene002292.t1 AT4G25780 44.248 113 57 4 33 139 55 167 4.41e-22 88.6

Find 42 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTATACTCAAATTATT+TGG 0.165449 2.3:-72861821 MS.gene002292:CDS
TGGTGTTGGTCCACTTTATT+GGG 0.256190 2.3:-72862045 MS.gene002292:CDS
TTGGTGTTGGTCCACTTTAT+TGG 0.259570 2.3:-72862046 MS.gene002292:CDS
TTAGAGTGATAATCATAATT+AGG 0.290359 2.3:+72861867 None:intergenic
GTACGGATTCTGTGAAGTTT+TGG 0.310490 2.3:-72861902 MS.gene002292:CDS
TTGTGAACTTGAGCACTCTA+TGG 0.332156 2.3:-72861970 MS.gene002292:CDS
GGTTGAGCAAATGAAGAAAA+TGG 0.360878 2.3:+72862148 None:intergenic
GGGAAATATTAATGCAACTA+AGG 0.364039 2.3:+72862126 None:intergenic
CAGGCCCTTGTCAAGTCAAC+TGG 0.382889 2.3:+72859975 None:intergenic
CAAGTCAACTGGAACACAAC+AGG 0.401326 2.3:+72859986 None:intergenic
CGCATCCCAGGGGCTGTCCC+TGG 0.404256 2.3:+72860026 None:intergenic
GAGCACTCTATGGGTCCTTA+TGG 0.410346 2.3:-72861960 MS.gene002292:CDS
TGGCGTGATTCTGTTCATCT+TGG 0.440436 2.3:-72861801 MS.gene002292:CDS
GAGAACCTTGCTGAGGGTTA+TGG 0.444830 2.3:-72861936 MS.gene002292:CDS
GAAGGAATCTCTGCTGTGTC+AGG 0.447453 2.3:-72860068 MS.gene002292:CDS
GAGCGTAGGCTTCAAGGGTA+TGG 0.465241 2.3:+72862021 None:intergenic
AATATACCAGGGACAGCCCC+TGG 0.471976 2.3:-72860032 MS.gene002292:CDS
GTACCTCAAGGTAATCTTGA+GGG 0.504079 2.3:+72862090 None:intergenic
CTGTCCCTGGTATATTCTGT+CGG 0.513305 2.3:+72860039 None:intergenic
GGAAATATTAATGCAACTAA+GGG 0.514988 2.3:+72862127 None:intergenic
TCAGCAAGGTTCTCACCATA+AGG 0.519070 2.3:+72861945 None:intergenic
ATTGAAATTTCAAAAGCAGA+AGG 0.550035 2.3:-72860086 MS.gene002292:CDS
TGTGAACTTGAGCACTCTAT+GGG 0.557267 2.3:-72861969 MS.gene002292:CDS
TTATGGTGAGAACCTTGCTG+AGG 0.564497 2.3:-72861943 MS.gene002292:CDS
AGGGTATGGTCCCAATAAAG+TGG 0.564583 2.3:+72862035 None:intergenic
ATGGCTAAGATCATATTATG+TGG 0.564871 2.3:+72862167 None:intergenic
GCTCGAGATGAGGTTGGTGT+TGG 0.566361 2.3:-72862059 MS.gene002292:CDS
GAGGGTTATGGTGAAGTGAA+TGG 0.598130 2.3:-72861924 MS.gene002292:CDS
TTATGGTGAAGTGAATGGTA+CGG 0.605852 2.3:-72861919 MS.gene002292:CDS
GAGCTTGATTATGTACCTCA+AGG 0.611826 2.3:+72862078 None:intergenic
TATGGTGAGAACCTTGCTGA+GGG 0.618070 2.3:-72861942 MS.gene002292:CDS
AATCAAGCTCGAGATGAGGT+TGG 0.619159 2.3:-72862065 MS.gene002292:CDS
ATATACCAGGGACAGCCCCT+GGG 0.619656 2.3:-72860031 MS.gene002292:CDS
AAGTCAACTGGAACACAACA+GGG 0.619962 2.3:+72859987 None:intergenic
TGTACCTCAAGGTAATCTTG+AGG 0.625790 2.3:+72862089 None:intergenic
TACCTCAAGGTAATCTTGAG+GGG 0.626699 2.3:+72862091 None:intergenic
TCTTGTGTTAATGATGAGTG+TGG 0.652987 2.3:-72861843 MS.gene002292:CDS
ACATAATCAAGCTCGAGATG+AGG 0.662626 2.3:-72862069 MS.gene002292:CDS
CTTCACCATAACCCTCAGCA+AGG 0.671746 2.3:+72861931 None:intergenic
CTTGTGTTAATGATGAGTGT+GGG 0.697366 2.3:-72861842 MS.gene002292:CDS
CTCCCCTCAAGATTACCTTG+AGG 0.725233 2.3:-72862093 MS.gene002292:CDS
AAAACCGACAGAATATACCA+GGG 0.762864 2.3:-72860043 MS.gene002292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAAGAAAATCAATA+TGG + chr2.3:72860468-72860487 None:intergenic 10.0%
!!! TGCTTTTATTTACTATTTAT+TGG - chr2.3:72860958-72860977 MS.gene002292:intron 15.0%
!! ATAAGTTAATTAGTACTACA+TGG - chr2.3:72860498-72860517 MS.gene002292:intron 20.0%
!! CGGATTAATAATAAGAAATA+AGG - chr2.3:72860749-72860768 MS.gene002292:intron 20.0%
!! TATCATAATAACTAAATGAG+AGG + chr2.3:72860546-72860565 None:intergenic 20.0%
!! TGTTATATATACACAGTAAA+CGG - chr2.3:72860729-72860748 MS.gene002292:intron 20.0%
!! TTAGAGTGATAATCATAATT+AGG + chr2.3:72860297-72860316 None:intergenic 20.0%
!!! AACACTTTTCTTCTATTTAT+TGG - chr2.3:72860854-72860873 MS.gene002292:intron 20.0%
!!! ACACTTGTTTTAACAAAATA+CGG + chr2.3:72861101-72861120 None:intergenic 20.0%
!!! GTTTACTTTAAGTTGTTATT+TGG - chr2.3:72861874-72861893 MS.gene002292:CDS 20.0%
!!! TTAAGTTTGTTGTTTGTAAT+TGG - chr2.3:72861075-72861094 MS.gene002292:intron 20.0%
! ACAACAAGTACAAATCAAAA+TGG + chr2.3:72861617-72861636 None:intergenic 25.0%
! ACCATATTGTAATATGAAGA+AGG - chr2.3:72860613-72860632 MS.gene002292:intron 25.0%
! AGTAAACTGTAGAAAGTAAA+TGG + chr2.3:72861861-72861880 None:intergenic 25.0%
! ATTGAAATTTCAAAAGCAGA+AGG - chr2.3:72862075-72862094 MS.gene002292:CDS 25.0%
! CATATTGTAATATGAAGAAG+GGG - chr2.3:72860615-72860634 MS.gene002292:intron 25.0%
! CCATATTGTAATATGAAGAA+GGG - chr2.3:72860614-72860633 MS.gene002292:intron 25.0%
! GAATGATGTCAAAACATTTA+AGG - chr2.3:72861288-72861307 MS.gene002292:intron 25.0%
! GGAAATATTAATGCAACTAA+GGG + chr2.3:72860037-72860056 None:intergenic 25.0%
! GGCATTATACTCAAATTATT+TGG - chr2.3:72860340-72860359 MS.gene002292:intron 25.0%
!! ACTTTTCTTCTATTTATTGG+AGG - chr2.3:72860857-72860876 MS.gene002292:intron 25.0%
!! ATTTAGATCTTTTAAACAGG+TGG - chr2.3:72860996-72861015 MS.gene002292:intron 25.0%
!! GAGATTTAGATCTTTTAAAC+AGG - chr2.3:72860993-72861012 MS.gene002292:intron 25.0%
!!! AATAGAAGAAAAGTGTTGTT+TGG + chr2.3:72860851-72860870 None:intergenic 25.0%
!!! AATGTTTTGACATCATTCTT+AGG + chr2.3:72861286-72861305 None:intergenic 25.0%
!!! AATTCTGAAAGTGTCAATTA+GGG - chr2.3:72861454-72861473 MS.gene002292:intron 25.0%
!!! ATTGGAGGATTCTTTTTTTA+AGG - chr2.3:72860872-72860891 MS.gene002292:intron 25.0%
!!! TAAAATAATCATTAGCCTTC+CGG + chr2.3:72860663-72860682 None:intergenic 25.0%
!!! TTGGAGGATTCTTTTTTTAA+GGG - chr2.3:72860873-72860892 MS.gene002292:intron 25.0%
ATATAGCCTAAGAATGACAT+GGG + chr2.3:72861395-72861414 None:intergenic 30.0%
ATGGCTAAGATCATATTATG+TGG + chr2.3:72859997-72860016 None:intergenic 30.0%
CCCTTCTTCATATTACAATA+TGG + chr2.3:72860617-72860636 None:intergenic 30.0%
GGGAAATATTAATGCAACTA+AGG + chr2.3:72860038-72860057 None:intergenic 30.0%
TATATAGCCTAAGAATGACA+TGG + chr2.3:72861396-72861415 None:intergenic 30.0%
TGTTCAAGAATATTCAAGTC+TGG + chr2.3:72860687-72860706 None:intergenic 30.0%
! AGGTATTTGTTAACCCATAT+CGG + chr2.3:72861834-72861853 None:intergenic 30.0%
! TCTTTTAAACAGGTGGTTAA+AGG - chr2.3:72861003-72861022 MS.gene002292:intron 30.0%
!! CAATTCTGAAAGTGTCAATT+AGG - chr2.3:72861453-72861472 MS.gene002292:intron 30.0%
!! TTTGTACTTGTTGTAATCAC+TGG - chr2.3:72861623-72861642 MS.gene002292:intron 30.0%
!!! AAAGGTCATTTTTCTTGTAG+TGG + chr2.3:72861920-72861939 None:intergenic 30.0%
!!! CTGCTTTTGAAATTTCAATC+TGG + chr2.3:72862074-72862093 None:intergenic 30.0%
AAAAACCGACAGAATATACC+AGG - chr2.3:72862117-72862136 MS.gene002292:CDS 35.0%
AAAACCGACAGAATATACCA+GGG - chr2.3:72862118-72862137 MS.gene002292:CDS 35.0%
AAATATCACGGGTAGTGATT+AGG - chr2.3:72861700-72861719 MS.gene002292:intron 35.0%
AACACACAGCTGATCTAATT+CGG + chr2.3:72861351-72861370 None:intergenic 35.0%
AACCCAACCATTCTTACATT+TGG + chr2.3:72860397-72860416 None:intergenic 35.0%
AGTCCAAATGTAAGAATGGT+TGG - chr2.3:72860391-72860410 MS.gene002292:intron 35.0%
ATCAATCCCATGTCATTCTT+AGG - chr2.3:72861386-72861405 MS.gene002292:intron 35.0%
CAAGTGTTCTAGTAAGATGT+TGG - chr2.3:72861114-72861133 MS.gene002292:intron 35.0%
CATGTCATGTTTCACTTTCT+TGG - chr2.3:72861170-72861189 MS.gene002292:intron 35.0%
CTTGTGTTAATGATGAGTGT+GGG - chr2.3:72860319-72860338 MS.gene002292:intron 35.0%
GAAACAATACAAACAACAGC+AGG + chr2.3:72860524-72860543 None:intergenic 35.0%
GACATCATTCTTAGGAAACA+CGG + chr2.3:72861278-72861297 None:intergenic 35.0%
GAGTGACTTACAAACATCAA+TGG + chr2.3:72861491-72861510 None:intergenic 35.0%
GCTAAGTCCAAATGTAAGAA+TGG - chr2.3:72860387-72860406 MS.gene002292:intron 35.0%
GGTTGAGCAAATGAAGAAAA+TGG + chr2.3:72860016-72860035 None:intergenic 35.0%
GTCCAAATGTAAGAATGGTT+GGG - chr2.3:72860392-72860411 MS.gene002292:intron 35.0%
TATAGTAGAGATTTCCTTCC+TGG - chr2.3:72861776-72861795 MS.gene002292:intron 35.0%
TATCATCTTGATGCTAGAGT+TGG - chr2.3:72861514-72861533 MS.gene002292:intron 35.0%
TCTTGTGTTAATGATGAGTG+TGG - chr2.3:72860318-72860337 MS.gene002292:intron 35.0%
TGTAGAAAGTAAATGGCACA+AGG + chr2.3:72861854-72861873 None:intergenic 35.0%
TGTCTTGGAGAGAAATATCA+CGG - chr2.3:72861688-72861707 MS.gene002292:intron 35.0%
TTATGGTGAAGTGAATGGTA+CGG - chr2.3:72860242-72860261 MS.gene002292:intron 35.0%
! AAGAAAAATGACCTTTTGCC+AGG - chr2.3:72861924-72861943 MS.gene002292:CDS 35.0%
! AGAAAAATGACCTTTTGCCA+GGG - chr2.3:72861925-72861944 MS.gene002292:CDS 35.0%
! GTTTCTCGTAGTCCAAATTT+TGG - chr2.3:72860637-72860656 MS.gene002292:intron 35.0%
!! GTGTTGTTTGGCATACTAAA+CGG + chr2.3:72860839-72860858 None:intergenic 35.0%
AAGTCAACTGGAACACAACA+GGG + chr2.3:72862177-72862196 None:intergenic 40.0%
ACATAATCAAGCTCGAGATG+AGG - chr2.3:72860092-72860111 MS.gene002292:CDS 40.0%
ATTTGTAGCTATTCACCACC+TGG - chr2.3:72860423-72860442 MS.gene002292:intron 40.0%
GAGCTTGATTATGTACCTCA+AGG + chr2.3:72860086-72860105 None:intergenic 40.0%
GTACCTCAAGGTAATCTTGA+GGG + chr2.3:72860074-72860093 None:intergenic 40.0%
GTCTTGGAGAGAAATATCAC+GGG - chr2.3:72861689-72861708 MS.gene002292:intron 40.0%
TACCTCAAGGTAATCTTGAG+GGG + chr2.3:72860073-72860092 None:intergenic 40.0%
TCTCATATCTAGGTGTGTCT+TGG - chr2.3:72861673-72861692 MS.gene002292:intron 40.0%
TGTACCTCAAGGTAATCTTG+AGG + chr2.3:72860075-72860094 None:intergenic 40.0%
TGTGAACTTGAGCACTCTAT+GGG - chr2.3:72860192-72860211 MS.gene002292:intron 40.0%
TTGTGAACTTGAGCACTCTA+TGG - chr2.3:72860191-72860210 MS.gene002292:intron 40.0%
! AGGGCCTTTGAAAATAAACG+AGG + chr2.3:72862036-72862055 None:intergenic 40.0%
! CAAGAGTGACTTCTGTTTCT+TGG - chr2.3:72861582-72861601 MS.gene002292:intron 40.0%
! GGCCTTTGAAAATAAACGAG+GGG + chr2.3:72862034-72862053 None:intergenic 40.0%
! GGGCCTTTGAAAATAAACGA+GGG + chr2.3:72862035-72862054 None:intergenic 40.0%
! GTACGGATTCTGTGAAGTTT+TGG - chr2.3:72860259-72860278 MS.gene002292:intron 40.0%
! TGTACTTCTGATTCGCAAGT+AGG - chr2.3:72860782-72860801 MS.gene002292:intron 40.0%
! TTTGAATTTTGCGCATCCCA+GGG + chr2.3:72862149-72862168 None:intergenic 40.0%
! TTTTGAATTTTGCGCATCCC+AGG + chr2.3:72862150-72862169 None:intergenic 40.0%
!! TCGTTTATTTTCAAAGGCCC+TGG - chr2.3:72862035-72862054 MS.gene002292:CDS 40.0%
!! TGCCCCTCGTTTATTTTCAA+AGG - chr2.3:72862029-72862048 MS.gene002292:CDS 40.0%
!! TGGTGTTGGTCCACTTTATT+GGG - chr2.3:72860116-72860135 MS.gene002292:intron 40.0%
!! TTGGTGTTGGTCCACTTTAT+TGG - chr2.3:72860115-72860134 MS.gene002292:intron 40.0%
!! TTTTGCCAGGGATTTTGACA+GGG - chr2.3:72861937-72861956 MS.gene002292:CDS 40.0%
!!! CAAAGGCCCTGGTTTTTTTT+AGG - chr2.3:72862046-72862065 MS.gene002292:CDS 40.0%
!!! GTTTGCATAGTTTTGAGCGT+AGG + chr2.3:72860157-72860176 None:intergenic 40.0%
AAACCGGAGGTTGTTTACGT+AGG - chr2.3:72861736-72861755 MS.gene002292:intron 45.0%
AACCGCTGACATACAACACA+GGG - chr2.3:72862003-72862022 MS.gene002292:CDS 45.0%
AATCAAGCTCGAGATGAGGT+TGG - chr2.3:72860096-72860115 MS.gene002292:CDS 45.0%
AGGGTATGGTCCCAATAAAG+TGG + chr2.3:72860129-72860148 None:intergenic 45.0%
AGGTGCGAATGCAAGTAAAC+CGG - chr2.3:72861720-72861739 MS.gene002292:intron 45.0%
AGTCCTACGTAAACAACCTC+CGG + chr2.3:72861742-72861761 None:intergenic 45.0%
ATCACTGGTGAGTGATTGAG+AGG - chr2.3:72861638-72861657 MS.gene002292:intron 45.0%
ATGGGATTGATGAGCAACTC+AGG + chr2.3:72861377-72861396 None:intergenic 45.0%
ATTTGCCAGGGAAAATGCCA+AGG - chr2.3:72861978-72861997 MS.gene002292:CDS 45.0%
CAAGTCAACTGGAACACAAC+AGG + chr2.3:72862178-72862197 None:intergenic 45.0%
CGTTCTCCTTCAACATTTCC+AGG + chr2.3:72860444-72860463 None:intergenic 45.0%
CTGGCGCCTAAAAAAAACCA+GGG + chr2.3:72862055-72862074 None:intergenic 45.0%
CTGTCAAAATCCCTGGCAAA+AGG + chr2.3:72861938-72861957 None:intergenic 45.0%
CTGTCCCTGGTATATTCTGT+CGG + chr2.3:72862125-72862144 None:intergenic 45.0%
GAGGGTTATGGTGAAGTGAA+TGG - chr2.3:72860237-72860256 MS.gene002292:intron 45.0%
GCAGCTTCAGTAGTCTTCTT+AGG + chr2.3:72861434-72861453 None:intergenic 45.0%
GTGAGAGAGGTCTCATATCT+AGG - chr2.3:72861663-72861682 MS.gene002292:intron 45.0%
TATGGTGAGAACCTTGCTGA+GGG - chr2.3:72860219-72860238 MS.gene002292:intron 45.0%
TCACCACCTGGAAATGTTGA+AGG - chr2.3:72860435-72860454 MS.gene002292:intron 45.0%
TCAGCAAGGTTCTCACCATA+AGG + chr2.3:72860219-72860238 None:intergenic 45.0%
TCTCCTTCAACATTTCCAGG+TGG + chr2.3:72860441-72860460 None:intergenic 45.0%
TCTGGCGCCTAAAAAAAACC+AGG + chr2.3:72862056-72862075 None:intergenic 45.0%
TGATTGAGAGGAAGTGAGAG+AGG - chr2.3:72861650-72861669 MS.gene002292:intron 45.0%
TGGACAAGATGTCGACATGT+TGG - chr2.3:72861134-72861153 MS.gene002292:intron 45.0%
TGGCGTGATTCTGTTCATCT+TGG - chr2.3:72860360-72860379 MS.gene002292:intron 45.0%
TTATGGTGAGAACCTTGCTG+AGG - chr2.3:72860218-72860237 MS.gene002292:intron 45.0%
TTCGCAAGTAGGAAGTTGAG+TGG - chr2.3:72860793-72860812 MS.gene002292:intron 45.0%
TTTCCCTGGCAAATTTGCCA+GGG + chr2.3:72861972-72861991 None:intergenic 45.0%
! GTGGTGCCAAAATGTGTTCA+CGG - chr2.3:72860812-72860831 MS.gene002292:intron 45.0%
! TGGTGCCAAAATGTGTTCAC+GGG - chr2.3:72860813-72860832 MS.gene002292:intron 45.0%
! TTAGCCTTCCGGCCAAAATT+TGG + chr2.3:72860652-72860671 None:intergenic 45.0%
! TTGAATTTTGCGCATCCCAG+GGG + chr2.3:72862148-72862167 None:intergenic 45.0%
! TTTTCCCTGGCAAATTTGCC+AGG + chr2.3:72861973-72861992 None:intergenic 45.0%
!! CTCGTAGTCCAAATTTTGGC+CGG - chr2.3:72860641-72860660 MS.gene002292:intron 45.0%
!! CTTTTGCCAGGGATTTTGAC+AGG - chr2.3:72861936-72861955 MS.gene002292:CDS 45.0%
!! GTTTTGAGCGTAGGCTTCAA+GGG + chr2.3:72860148-72860167 None:intergenic 45.0%
!! TAGTCCAAATTTTGGCCGGA+AGG - chr2.3:72860645-72860664 MS.gene002292:intron 45.0%
!! TTGAGGGGAGTTTTGTGCTT+GGG + chr2.3:72860058-72860077 None:intergenic 45.0%
!! TTTGCCAGGGATTTTGACAG+GGG - chr2.3:72861938-72861957 MS.gene002292:CDS 45.0%
!!! AGTTTTGAGCGTAGGCTTCA+AGG + chr2.3:72860149-72860168 None:intergenic 45.0%
AAACCCCTGGCAAATTTGCC+AGG - chr2.3:72861965-72861984 MS.gene002292:CDS 50.0%
AACCCCTGGCAAATTTGCCA+GGG - chr2.3:72861966-72861985 MS.gene002292:CDS 50.0%
ACCCCTGTGTTGTATGTCAG+CGG + chr2.3:72862008-72862027 None:intergenic 50.0%
ACCGCTGACATACAACACAG+GGG - chr2.3:72862004-72862023 MS.gene002292:CDS 50.0%
CAAACCCCTGTCAAAATCCC+TGG + chr2.3:72861945-72861964 None:intergenic 50.0%
CTCCCCTCAAGATTACCTTG+AGG - chr2.3:72860068-72860087 MS.gene002292:CDS 50.0%
CTTCACCATAACCCTCAGCA+AGG + chr2.3:72860233-72860252 None:intergenic 50.0%
GAACCGCTGACATACAACAC+AGG - chr2.3:72862002-72862021 MS.gene002292:CDS 50.0%
GAAGGAATCTCTGCTGTGTC+AGG - chr2.3:72862093-72862112 MS.gene002292:CDS 50.0%
GAGAACCTTGCTGAGGGTTA+TGG - chr2.3:72860225-72860244 MS.gene002292:intron 50.0%
GAGCACTCTATGGGTCCTTA+TGG - chr2.3:72860201-72860220 MS.gene002292:intron 50.0%
GCTTGAATGCCTCCAGATGT+AGG - chr2.3:72861798-72861817 MS.gene002292:CDS 50.0%
TGCGAATGCAAGTAAACCGG+AGG - chr2.3:72861723-72861742 MS.gene002292:intron 50.0%
TGTATGTCAGCGGTTCTCCT+TGG + chr2.3:72861998-72862017 None:intergenic 50.0%
TTCCCTGGCAAATTTGCCAG+GGG + chr2.3:72861971-72861990 None:intergenic 50.0%
! AACGGCCCGTGAACACATTT+TGG + chr2.3:72860821-72860840 None:intergenic 50.0%
! AGGCGACATTGCACCGATAT+GGG - chr2.3:72861818-72861837 MS.gene002292:CDS 50.0%
! GTTCTCCTTGGCATTTTCCC+TGG + chr2.3:72861986-72862005 None:intergenic 50.0%
! TAGGCGACATTGCACCGATA+TGG - chr2.3:72861817-72861836 MS.gene002292:CDS 50.0%
!! CTTGAGGGGAGTTTTGTGCT+TGG + chr2.3:72860059-72860078 None:intergenic 50.0%
AATATACCAGGGACAGCCCC+TGG - chr2.3:72862129-72862148 MS.gene002292:CDS 55.0%
ACACGGCAAAGCACGCTTCT+TGG + chr2.3:72861261-72861280 None:intergenic 55.0%
ATATACCAGGGACAGCCCCT+GGG - chr2.3:72862130-72862149 MS.gene002292:CDS 55.0%
GAGCGTAGGCTTCAAGGGTA+TGG + chr2.3:72860143-72860162 None:intergenic 55.0%
GCAATGTCGCCTACATCTGG+AGG + chr2.3:72861810-72861829 None:intergenic 55.0%
GGTGCAATGTCGCCTACATC+TGG + chr2.3:72861813-72861832 None:intergenic 55.0%
! TGACAGGGGTTTGAAACCCC+TGG - chr2.3:72861952-72861971 MS.gene002292:CDS 55.0%
!! CATCTGGAGGCATTCAAGCC+AGG + chr2.3:72861797-72861816 None:intergenic 55.0%
!! GCTCGAGATGAGGTTGGTGT+TGG - chr2.3:72860102-72860121 MS.gene002292:intron 55.0%
!! TGGAGGCATTCAAGCCAGGA+AGG + chr2.3:72861793-72861812 None:intergenic 55.0%
CGCATCCCAGGGGCTGTCCC+TGG + chr2.3:72862138-72862157 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 72859985 72862198 72859985 ID=MS.gene002292
chr2.3 mRNA 72859985 72862198 72859985 ID=MS.gene002292.t1;Parent=MS.gene002292
chr2.3 exon 72861784 72862198 72861784 ID=MS.gene002292.t1.exon1;Parent=MS.gene002292.t1
chr2.3 CDS 72861784 72862198 72861784 ID=cds.MS.gene002292.t1;Parent=MS.gene002292.t1
chr2.3 exon 72859985 72860115 72859985 ID=MS.gene002292.t1.exon2;Parent=MS.gene002292.t1
chr2.3 CDS 72859985 72860115 72859985 ID=cds.MS.gene002292.t1;Parent=MS.gene002292.t1
Gene Sequence

>MS.gene002292

ATGAGGTCTCCACATAATATGATCTTAGCCATTTTCTTCATTTGCTCAACCCTTAGTTGCATTAATATTTCCCAAGCACAAAACTCCCCTCAAGATTACCTTGAGGTACATAATCAAGCTCGAGATGAGGTTGGTGTTGGTCCACTTTATTGGGACCATACCCTTGAAGCCTACGCTCAAAACTATGCAAACAAGAGAATCAAAGATTGTGAACTTGAGCACTCTATGGGTCCTTATGGTGAGAACCTTGCTGAGGGTTATGGTGAAGTGAATGGTACGGATTCTGTGAAGTTTTGGCTAAGTGAAAAGCCTAATTATGATTATCACTCTAACTCTTGTGTTAATGATGAGTGTGGGCATTATACTCAAATTATTTGGCGTGATTCTGTTCATCTTGGTTGTGCTAAGTCCAAATGTAAGAATGGTTGGGTTTTTGTCATTTGTAGCTATTCACCACCTGGAAATGTTGAAGGAGAACGACCATATTGATTTTCTTTTATATATTTTCTAAAAATAAGTTAATTAGTACTACATGGCCTGCTGTTGTTTGTATTGTTTCCTCTCATTTAGTTATTATGATAATTATAATATAATAAGCAATTATAATGTATATTTTTTTTTGTCTTAGACCATATTGTAATATGAAGAAGGGGTTTCTCGTAGTCCAAATTTTGGCCGGAAGGCTAATGATTATTTTATCCAGACTTGAATATTCTTGAACAATTTATCGTTAACACTCTTACATGTTATATATACACAGTAAACGGATTAATAATAAGAAATAAGGCTGATTCTCTTGTACTTCTGATTCGCAAGTAGGAAGTTGAGTGGTGCCAAAATGTGTTCACGGGCCGTTTAGTATGCCAAACAACACTTTTCTTCTATTTATTGGAGGATTCTTTTTTTAAGGGTTAATAATTAATAATTTGCAGTCTTTAGTTCTAAATTATTTAAGAATTAACAATGTTTAATATGCTTTTATTTACTATTTATTGGTTTTAGTAGTAAGAGATTTAGATCTTTTAAACAGGTGGTTAAAGGTTCGATCTATGACTCTTGTATAAAGAAAAATTCAATTATGATGAAAGTGTTAAGTTTGTTGTTTGTAATTGGCCGTATTTTGTTAAAACAAGTGTTCTAGTAAGATGTTGGACAAGATGTCGACATGTTGGTACGACATCGTAGCATGTCATGTTTCACTTTCTTGGAAAATTTGTTTTAAGCGTGAGATCTCTGAAGATTCTATAAAGATATGATTCATGTAGTGTGTTGACCAAGAAGCGTGCTTTGCCGTGTTTCCTAAGAATGATGTCAAAACATTTAAGGAAACAATATATATGCTTCAAGAATATTGTGCTGAAGACCGAATTAGATCAGCTGTGTGTTTTGCCTGAGTTGCTCATCAATCCCATGTCATTCTTAGGCTATATAAACAAAGACTATAAACCTAAGAAGACTACTGAAGCTGCAATTCTGAAAGTGTCAATTAGGGTTTTAGTCTGTCCATTGATGTTTGTAAGTCACTCTTGTATCATCTTGATGCTAGAGTTGGACTAATAGTTGAGTTGTAATTGTGAATCACTCGTACGCTTTTACGCAAGAGTGACTTCTGTTTCTTGGAGTGTGTCTCCATTTTGATTTGTACTTGTTGTAATCACTGGTGAGTGATTGAGAGGAAGTGAGAGAGGTCTCATATCTAGGTGTGTCTTGGAGAGAAATATCACGGGTAGTGATTAGGTGCGAATGCAAGTAAACCGGAGGTTGTTTACGTAGGACTTCAATTTAATACTATATAGTAGAGATTTCCTTCCTGGCTTGAATGCCTCCAGATGTAGGCGACATTGCACCGATATGGGTTAACAAATACCTTGTGCCATTTACTTTCTACAGTTTACTTTAAGTTGTTATTTGGTAATTGTGTTGTTACGATGTCCACTACAAGAAAAATGACCTTTTGCCAGGGATTTTGACAGGGGTTTGAAACCCCTGGCAAATTTGCCAGGGAAAATGCCAAGGAGAACCGCTGACATACAACACAGGGGTTTGCCCCTCGTTTATTTTCAAAGGCCCTGGTTTTTTTTAGGCGCCAGATTGAAATTTCAAAAGCAGAAGGAATCTCTGCTGTGTCAGGCAAAAACCGACAGAATATACCAGGGACAGCCCCTGGGATGCGCAAAATTCAAAAGAATCCCTGTTGTGTTCCAGTTGACTTGA
Protein sequence

>MS.gene002292.t1

MRSPHNMILAIFFICSTLSCINISQAQNSPQDYLEVHNQARDEVGVGPLYWDHTLEAYAQNYANKRIKDCELEHSMGPYGENLAEGYGEVNGTDSVKFWLSEKPNYDYHSNSCVNDECGHYTQIIWRDSVHLGCAKSKCARLKFQKQKESLLCQAKTDRIYQGQPLGCAKFKRIPVVFQLT