AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005572

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005572.t1 MTR_1g088020 95.863 556 23 0 1 556 1 556 0.0 1092
MS.gene005572.t1 MTR_1g088225 94.964 556 26 1 1 556 1 554 0.0 1075
MS.gene005572.t1 MTR_1g054880 87.166 561 65 2 1 556 1 559 0.0 999
MS.gene005572.t1 MTR_0458s0010 81.655 556 65 4 1 556 1 519 0.0 886
MS.gene005572.t1 MTR_7g108890 75.376 532 128 2 26 556 34 563 0.0 847
MS.gene005572.t1 MTR_7g108875 66.229 533 175 3 26 556 36 565 0.0 742
MS.gene005572.t1 MTR_7g108900 65.784 529 174 5 26 551 32 556 0.0 724
MS.gene005572.t1 MTR_0458s0030 98.491 265 4 0 292 556 51 315 0.0 552
MS.gene005572.t1 MTR_0458s0030 82.353 51 9 0 1 51 1 51 3.09e-22 98.2
MS.gene005572.t1 MTR_1g088040 98.491 265 4 0 292 556 51 315 0.0 552
MS.gene005572.t1 MTR_1g088040 82.353 51 9 0 1 51 1 51 3.09e-22 98.2
MS.gene005572.t1 MTR_1g083520 50.547 548 237 9 12 555 11 528 0.0 524
MS.gene005572.t1 MTR_3g010770 47.514 543 262 9 32 556 39 576 6.11e-171 496
MS.gene005572.t1 MTR_8g042910 47.495 539 264 7 32 555 78 612 6.59e-170 495
MS.gene005572.t1 MTR_7g108905 50.833 480 205 9 77 551 99 552 5.52e-154 452
MS.gene005572.t1 MTR_4g025690 43.772 562 252 14 8 555 2 513 2.13e-139 414
MS.gene005572.t1 MTR_4g025730 45.574 531 228 15 32 555 33 509 3.90e-137 407
MS.gene005572.t1 MTR_8g023310 45.136 514 233 9 51 555 116 589 1.16e-132 399
MS.gene005572.t1 MTR_4g124520 46.404 431 197 6 127 555 123 521 8.67e-132 394
MS.gene005572.t1 MTR_2g044880 45.142 494 218 12 73 555 74 525 1.23e-131 394
MS.gene005572.t1 MTR_2g044810 40.493 568 282 11 5 555 6 534 1.45e-131 394
MS.gene005572.t1 MTR_4g087980 45.551 472 215 8 88 555 83 516 1.72e-130 391
MS.gene005572.t1 MTR_8g104655 42.419 554 283 12 8 555 18 541 4.22e-130 390
MS.gene005572.t1 MTR_1g008140 41.697 542 278 10 32 555 86 607 4.53e-130 393
MS.gene005572.t1 MTR_7g112580 44.093 474 219 9 91 555 106 542 1.84e-129 389
MS.gene005572.t1 MTR_8g104645 55.422 332 144 3 225 555 44 372 2.08e-129 383
MS.gene005572.t1 MTR_8g042900 45.148 474 226 11 84 555 140 581 4.28e-127 384
MS.gene005572.t1 MTR_4g025670 44.235 477 218 8 83 555 57 489 1.55e-126 380
MS.gene005572.t1 MTR_4g087970 44.017 468 226 9 91 555 83 517 1.72e-126 380
MS.gene005572.t1 MTR_3g010780 44.444 468 230 11 88 555 137 574 2.05e-126 382
MS.gene005572.t1 MTR_7g050870 44.397 473 216 10 91 555 121 554 3.86e-125 378
MS.gene005572.t1 MTR_7g050980 44.421 475 213 11 91 555 122 555 5.74e-125 378
MS.gene005572.t1 MTR_3g091380 41.744 539 276 11 32 555 82 597 1.23e-124 379
MS.gene005572.t1 MTR_7g050950 41.153 503 248 10 60 555 92 553 6.03e-121 367
MS.gene005572.t1 MTR_4g035980 40.074 539 269 13 32 555 40 539 8.63e-120 364
MS.gene005572.t1 MTR_3g033690 40.112 536 264 12 32 555 36 526 1.22e-117 358
MS.gene005572.t1 MTR_3g008720 39.106 537 269 13 32 555 36 527 3.77e-116 354
MS.gene005572.t1 MTR_3g008640 39.543 569 278 15 8 555 4 527 6.45e-116 354
MS.gene005572.t1 MTR_4g124550 40.851 470 251 7 91 555 146 593 3.15e-115 354
MS.gene005572.t1 MTR_3g008700 39.252 535 271 11 32 555 36 527 4.06e-115 352
MS.gene005572.t1 MTR_7g053360 38.732 568 284 15 8 555 4 527 2.45e-114 350
MS.gene005572.t1 MTR_8g023150 37.918 538 290 14 29 555 78 582 8.17e-106 329
MS.gene005572.t1 MTR_1g086210 37.838 481 264 7 91 555 108 569 2.05e-105 328
MS.gene005572.t1 MTR_2g044810 57.540 252 107 0 304 555 214 465 2.10e-105 325
MS.gene005572.t1 MTR_1g086190 35.795 528 321 8 31 555 51 563 1.38e-101 318
MS.gene005572.t1 MTR_8g104580 37.365 554 278 15 8 555 10 500 5.79e-100 311
MS.gene005572.t1 MTR_1g083510 38.413 479 264 12 91 554 120 582 1.24e-99 313
MS.gene005572.t1 MTR_7g112590 34.239 552 325 11 21 554 51 582 1.34e-99 313
MS.gene005572.t1 MTR_0618s0020 60.088 228 90 1 329 555 1 228 5.27e-99 300
MS.gene005572.t1 MTR_2g044660 49.521 313 151 3 243 555 327 632 7.26e-96 305
MS.gene005572.t1 MTR_1g083470 36.538 468 265 8 91 551 124 566 1.30e-94 300
MS.gene005572.t1 MTR_1g083500 36.538 468 265 8 91 551 124 566 1.30e-94 300
MS.gene005572.t1 MTR_7g110560 33.454 553 324 14 17 556 29 550 4.40e-94 298
MS.gene005572.t1 MTR_8g093460 47.799 318 150 6 238 544 228 540 2.38e-93 296
MS.gene005572.t1 MTR_1g083490 33.824 544 320 13 21 551 55 571 6.22e-93 296
MS.gene005572.t1 MTR_4g005170 33.645 535 316 12 29 551 64 571 5.49e-92 295
MS.gene005572.t1 MTR_4g005180 33.516 546 319 13 21 551 37 553 1.89e-91 292
MS.gene005572.t1 MTR_7g110490 36.897 477 275 8 88 550 105 569 7.24e-90 288
MS.gene005572.t1 MTR_7g110510 36.897 477 275 8 88 550 105 569 7.24e-90 288
MS.gene005572.t1 MTR_3g095920 36.326 479 252 11 98 554 116 563 7.82e-89 285
MS.gene005572.t1 MTR_7g110440 35.908 479 281 8 91 555 108 574 1.27e-88 285
MS.gene005572.t1 MTR_4g120280 37.387 444 237 11 125 554 155 571 3.56e-88 283
MS.gene005572.t1 MTR_4g120290 36.569 443 242 10 125 554 155 571 1.39e-85 277
MS.gene005572.t1 MTR_2g436040 32.096 539 312 11 29 552 44 543 2.80e-84 274
MS.gene005572.t1 MTR_5g083620 41.009 317 175 5 244 555 47 356 3.31e-79 253
MS.gene005572.t1 MTR_8g088610 40.483 331 183 6 225 552 54 373 1.31e-78 252
MS.gene005572.t1 MTR_2g436050 31.481 540 323 11 29 554 57 563 4.35e-75 249
MS.gene005572.t1 MTR_7g110420 33.401 491 289 10 91 555 108 586 4.00e-73 244
MS.gene005572.t1 MTR_7g107180 41.905 315 167 6 243 555 7 307 1.38e-72 234
MS.gene005572.t1 MTR_2g105560 39.365 315 173 6 243 555 41 339 9.70e-71 230
MS.gene005572.t1 MTR_7g110430 33.056 481 258 11 91 555 108 540 6.01e-70 234
MS.gene005572.t1 MTR_7g111560 29.304 546 313 14 30 554 62 555 1.67e-67 228
MS.gene005572.t1 MTR_1g086540 33.613 357 202 9 199 544 12 344 5.55e-52 181
MS.gene005572.t1 MTR_6g012800 34.954 329 180 10 242 553 5 316 2.64e-51 178
MS.gene005572.t1 MTR_6g024165 35.873 315 170 11 242 544 40 334 3.77e-50 176
MS.gene005572.t1 MTR_6g088810 35.410 305 169 7 251 544 90 377 3.93e-49 174
MS.gene005572.t1 MTR_7g011530 33.537 328 186 9 242 553 5 316 5.24e-48 169
MS.gene005572.t1 MTR_6g042660 34.323 303 163 8 221 518 25 296 5.75e-48 170
MS.gene005572.t1 MTR_8g102380 33.758 314 178 7 244 544 81 377 7.83e-48 171
MS.gene005572.t1 MTR_7g092780 33.654 312 183 6 243 544 90 387 1.86e-46 167
MS.gene005572.t1 MTR_2g039530 39.032 310 148 11 225 523 40 319 4.71e-46 165
MS.gene005572.t1 MTR_4g124740 32.268 313 176 9 242 544 53 339 1.93e-42 155
MS.gene005572.t1 MTR_1g033050 33.333 315 177 7 242 548 17 306 2.01e-42 154
MS.gene005572.t1 MTR_2g033970 32.051 312 183 7 243 545 56 347 9.34e-42 154
MS.gene005572.t1 MTR_7g102600 30.029 343 210 7 209 544 74 393 1.42e-41 154
MS.gene005572.t1 MTR_8g102380 35.496 262 140 7 244 492 81 326 1.70e-40 150
MS.gene005572.t1 MTR_5g095490 32.468 308 179 7 249 544 67 357 5.75e-40 149
MS.gene005572.t1 MTR_5g012600 31.132 318 190 7 242 547 62 362 6.09e-40 149
MS.gene005572.t1 MTR_5g083590 29.430 316 168 6 243 556 7 269 6.24e-40 146
MS.gene005572.t1 MTR_6g042690 32.808 317 171 11 243 544 39 328 9.45e-40 147
MS.gene005572.t1 MTR_5g093970 33.546 313 179 8 239 544 39 329 7.54e-39 145
MS.gene005572.t1 MTR_2g436600 30.990 313 176 10 243 545 55 337 4.68e-37 140
MS.gene005572.t1 MTR_5g088300 32.680 306 184 7 239 544 33 316 7.33e-37 139
MS.gene005572.t1 MTR_4g051810 31.068 309 192 6 238 546 32 319 1.36e-34 133
MS.gene005572.t1 MTR_5g088290 30.619 307 190 7 239 544 44 328 9.05e-34 131
MS.gene005572.t1 MTR_5g088280 30.619 307 189 7 239 544 35 318 4.48e-31 123
MS.gene005572.t1 MTR_8g036225 30.721 319 177 10 242 544 32 322 3.32e-30 121
MS.gene005572.t1 MTR_4g074290 29.032 310 199 7 240 544 68 361 1.51e-28 117
MS.gene005572.t1 MTR_2g073390 28.846 312 193 10 242 544 70 361 9.85e-27 112
MS.gene005572.t1 MTR_0009s0350 30.634 284 176 7 240 517 68 336 1.88e-26 111
MS.gene005572.t1 MTR_0009s0340 30.634 284 176 7 240 517 68 336 1.88e-26 111
MS.gene005572.t1 MTR_6g025590 36.170 188 101 7 223 400 33 211 1.42e-23 100
MS.gene005572.t1 MTR_0408s0030 35.878 131 70 4 415 544 31 148 8.96e-18 80.9
MS.gene005572.t1 MTR_7g102580 44.186 86 38 2 320 400 73 153 7.03e-15 72.8
MS.gene005572.t1 MTR_6g024200 29.651 172 100 4 374 544 125 276 1.24e-14 75.1
MS.gene005572.t1 MTR_4g130790 28.856 201 132 4 246 439 25 221 5.79e-14 72.8
MS.gene005572.t1 MTR_2g436070 25.369 339 196 13 29 343 57 362 5.57e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005572.t1 AT1G02810 60.243 576 200 9 8 556 5 578 0.0 685
MS.gene005572.t1 AT4G02330 59.162 573 215 9 1 556 2 572 0.0 676
MS.gene005572.t1 AT2G47550 60.926 540 197 8 22 556 29 559 0.0 655
MS.gene005572.t1 AT3G10720 48.519 540 257 10 32 556 83 616 2.87e-171 499
MS.gene005572.t1 AT5G04970 44.917 541 275 10 32 556 88 621 7.95e-156 459
MS.gene005572.t1 AT2G45220 42.806 563 261 13 1 555 2 511 4.81e-136 405
MS.gene005572.t1 AT2G26440 41.308 535 279 11 30 555 39 547 1.69e-134 402
MS.gene005572.t1 AT1G53830 43.333 540 278 7 29 555 63 587 3.89e-129 390
MS.gene005572.t1 AT3G60730 47.005 434 216 9 126 555 96 519 5.89e-129 387
MS.gene005572.t1 AT5G51490 41.728 544 252 11 32 555 38 536 1.73e-128 386
MS.gene005572.t1 AT3G43270 46.709 471 222 9 91 556 80 526 2.37e-128 386
MS.gene005572.t1 AT4G33220 43.931 519 255 11 53 555 25 523 2.51e-128 385
MS.gene005572.t1 AT3G05620 43.243 481 214 8 91 555 104 541 1.83e-126 381
MS.gene005572.t1 AT3G14310 42.413 547 275 10 32 555 63 592 5.53e-126 382
MS.gene005572.t1 AT1G23200 40.311 578 273 15 7 555 20 554 8.29e-126 380
MS.gene005572.t1 AT3G10720 63.462 260 95 0 297 556 1 260 6.07e-125 367
MS.gene005572.t1 AT1G11580 39.623 583 284 14 2 555 14 557 3.91e-124 376
MS.gene005572.t1 AT1G11580 46.991 432 196 7 127 555 177 578 1.62e-123 375
MS.gene005572.t1 AT4G33220 54.572 339 144 3 218 555 73 402 2.09e-123 369
MS.gene005572.t1 AT5G53370 46.065 432 211 9 127 555 173 585 1.13e-121 370
MS.gene005572.t1 AT5G53370 46.065 432 211 9 127 555 209 621 4.01e-121 370
MS.gene005572.t1 AT3G49220 45.662 438 212 9 123 555 180 596 4.02e-121 370
MS.gene005572.t1 AT4G02300 40.463 561 287 12 4 555 10 532 4.90e-121 367
MS.gene005572.t1 AT3G49220 45.662 438 212 9 123 555 225 641 1.51e-120 369
MS.gene005572.t1 AT5G04960 39.960 498 262 10 57 553 101 562 2.80e-119 363
MS.gene005572.t1 AT5G51500 39.962 533 277 12 32 555 42 540 3.15e-117 358
MS.gene005572.t1 AT2G26450 38.104 538 286 12 29 555 110 611 4.07e-117 360
MS.gene005572.t1 AT3G10710 39.700 534 278 14 26 555 68 561 3.93e-116 355
MS.gene005572.t1 AT4G02320 41.545 479 249 9 81 555 67 518 8.29e-115 350
MS.gene005572.t1 AT4G00190 39.360 531 253 15 31 555 7 474 2.86e-113 345
MS.gene005572.t1 AT3G05610 36.449 535 302 10 31 556 61 566 6.91e-113 350
MS.gene005572.t1 AT1G53840 38.208 547 285 14 27 549 64 581 4.19e-112 346
MS.gene005572.t1 AT2G43050 41.702 470 227 8 88 556 94 517 3.60e-110 338
MS.gene005572.t1 AT3G59010 43.981 432 209 7 126 556 130 529 4.95e-109 336
MS.gene005572.t1 AT4G33230 37.407 540 296 13 29 555 96 606 8.95e-109 338
MS.gene005572.t1 AT5G27870 38.495 465 263 7 91 555 121 562 1.84e-104 330
MS.gene005572.t1 AT5G49180 37.051 529 309 7 29 551 56 566 1.04e-103 323
MS.gene005572.t1 AT3G47400 40.812 468 247 6 91 555 154 594 2.20e-102 321
MS.gene005572.t1 AT3G14300 40.638 470 241 10 91 550 525 966 6.93e-99 321
MS.gene005572.t1 AT4G03930 41.995 431 217 9 126 555 126 524 4.15e-98 308
MS.gene005572.t1 AT3G06830 39.535 430 245 6 126 553 150 566 4.79e-98 309
MS.gene005572.t1 AT5G20860 34.964 552 279 14 32 555 39 538 1.39e-97 307
MS.gene005572.t1 AT3G27980 41.026 429 212 8 130 555 107 497 7.47e-97 303
MS.gene005572.t1 AT1G11590 41.299 431 220 10 126 555 126 524 2.71e-95 300
MS.gene005572.t1 AT5G09760 46.835 316 143 8 243 543 241 546 3.04e-85 275
MS.gene005572.t1 AT5G09760 46.835 316 143 8 243 543 267 572 4.88e-85 275
MS.gene005572.t1 AT1G11370 52.869 244 112 1 243 486 46 286 3.32e-84 264
MS.gene005572.t1 AT4G15980 43.675 332 181 3 223 553 374 700 8.62e-83 273
MS.gene005572.t1 AT4G15980 43.675 332 181 3 223 553 384 710 9.15e-83 273
MS.gene005572.t1 AT5G64640 35.941 473 251 10 98 548 160 602 7.55e-82 268
MS.gene005572.t1 AT5G20860 32.282 539 257 13 32 542 39 497 2.46e-77 253
MS.gene005572.t1 AT2G47030 42.857 315 173 4 244 555 278 588 1.47e-73 245
MS.gene005572.t1 AT2G47040 31.283 569 330 13 31 555 44 595 3.81e-73 244
MS.gene005572.t1 AT3G62170 30.853 551 346 12 29 555 49 588 2.96e-70 236
MS.gene005572.t1 AT5G19730 35.669 314 174 7 242 544 85 381 1.14e-51 181
MS.gene005572.t1 AT3G29090 35.154 293 164 6 237 518 1 278 1.77e-48 171
MS.gene005572.t1 AT1G05310 35.577 312 177 6 243 544 91 388 9.56e-48 171
MS.gene005572.t1 AT2G21610 32.673 303 184 6 242 544 50 332 2.45e-47 169
MS.gene005572.t1 AT2G21610 32.673 303 184 6 242 544 55 337 3.00e-47 169
MS.gene005572.t1 AT2G36710 32.698 315 191 5 242 549 90 390 5.19e-47 169
MS.gene005572.t1 AT3G24130 34.783 322 175 8 243 550 34 334 1.10e-46 167
MS.gene005572.t1 AT5G18990 37.801 291 146 8 243 518 29 299 1.49e-46 166
MS.gene005572.t1 AT3G17060 31.410 312 185 7 243 545 46 337 1.25e-45 164
MS.gene005572.t1 AT2G36700 31.494 308 191 5 242 544 41 333 2.64e-45 163
MS.gene005572.t1 AT2G19150 30.031 323 196 8 239 551 37 339 1.82e-43 158
MS.gene005572.t1 AT5G07430 32.063 315 193 7 234 544 58 355 1.71e-40 150
MS.gene005572.t1 AT5G47500 30.794 315 189 7 242 544 60 357 1.16e-39 148
MS.gene005572.t1 AT5G55590 31.761 318 188 7 239 544 78 378 2.27e-38 145
MS.gene005572.t1 AT5G26810 31.928 332 196 8 225 544 20 333 2.42e-38 144
MS.gene005572.t1 AT2G47280 31.889 323 184 10 243 550 35 336 4.86e-38 143
MS.gene005572.t1 AT2G19150 32.443 262 149 7 239 490 37 280 1.60e-37 140
MS.gene005572.t1 AT5G55590 33.460 263 148 6 239 489 78 325 3.33e-36 138
MS.gene005572.t1 AT5G07420 30.293 307 193 7 242 544 66 355 1.20e-35 137
MS.gene005572.t1 AT1G44980 42.515 167 93 1 243 409 78 241 2.80e-34 130
MS.gene005572.t1 AT5G61680 31.068 309 189 9 242 544 68 358 1.40e-33 131
MS.gene005572.t1 AT1G69940 28.896 308 196 8 242 544 66 355 1.20e-32 129
MS.gene005572.t1 AT5G07410 28.896 308 196 8 242 544 66 355 2.26e-32 128
MS.gene005572.t1 AT3G49220 29.808 208 121 8 123 326 225 411 1.74e-15 79.3

Find 0 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATACTATTAACAAAAAA+TGG - 11220:13203-13222 MS.gene005572:CDS 10.0%
!!! ATATTTTATATTGTGATTTA+TGG - 11220:13371-13390 MS.gene005572:CDS 10.0%
!! TCAAATATACGTTTAAAAAT+CGG + 11220:13235-13254 MS.gene005572:intergenic 15.0%
!! AAAGTAAAATAAGAACATCA+TGG - 11220:12745-12764 MS.gene005572:CDS 20.0%
!! AAGCATTTGAATTTCAAAAA+TGG - 11220:12780-12799 MS.gene005572:CDS 20.0%
!! TTAAACGTATATTTGATGAA+TGG - 11220:13239-13258 MS.gene005572:CDS 20.0%
!!! AATACGTTTTTACAATAAGT+AGG + 11220:12309-12328 MS.gene005572:intergenic 20.0%
!!! ATAAATGTTTCCATTTTGAT+TGG + 11220:12334-12353 MS.gene005572:intergenic 20.0%
!!! ATACGTTTTTACAATAAGTA+GGG + 11220:12308-12327 MS.gene005572:intergenic 20.0%
!!! ATCAAGTACTTTTTGTTTTT+GGG + 11220:13065-13084 MS.gene005572:intergenic 20.0%
!!! GATGTTCTTATTTTACTTTT+AGG + 11220:12744-12763 MS.gene005572:intergenic 20.0%
! AATGGAAACATTTATGACTA+TGG - 11220:12339-12358 MS.gene005572:CDS 25.0%
! CTATTGAATTCATGAACTTA+CGG + 11220:12398-12417 MS.gene005572:intergenic 25.0%
! TATTGAATTCATGAACTTAC+GGG + 11220:12397-12416 MS.gene005572:intergenic 25.0%
! TGGTAAGCAAATTTAATACT+TGG - 11220:13172-13191 MS.gene005572:CDS 25.0%
! TTAGCAATCATTGTAAAAGT+CGG + 11220:13300-13319 MS.gene005572:intergenic 25.0%
! TTCTTCATATTTATCACCAA+AGG - 11220:13014-13033 MS.gene005572:intron 25.0%
! TTTACAATAAGTAGGGTTTA+CGG + 11220:12301-12320 MS.gene005572:intergenic 25.0%
!! AGTTTTTATGCAATCTTTCA+TGG - 11220:13888-13907 MS.gene005572:CDS 25.0%
!! CTTTTACAATGATTGCTAAA+AGG - 11220:13301-13320 MS.gene005572:CDS 25.0%
!! GTTACAATTTTGCAAAACAA+CGG + 11220:13683-13702 MS.gene005572:intergenic 25.0%
!! TTAAATTTGCTTACCAAATG+TGG + 11220:13168-13187 MS.gene005572:intergenic 25.0%
!!! AAACAAAAAGTACTTGATGA+TGG - 11220:13067-13086 MS.gene005572:intron 25.0%
!!! AGATTGATTTGTTGTTGTAT+AGG + 11220:12523-12542 MS.gene005572:intergenic 25.0%
!!! CATCAAGTACTTTTTGTTTT+TGG + 11220:13066-13085 MS.gene005572:intergenic 25.0%
AACGTATTTGCCAATCAAAA+TGG - 11220:12321-12340 MS.gene005572:CDS 30.0%
ACTTTGTACTATGCAGAATA+CGG - 11220:13967-13986 MS.gene005572:CDS 30.0%
ATCAATCAAACAGTTATCAC+CGG - 11220:13101-13120 MS.gene005572:intron 30.0%
ATTCAAAACTCAATTCAGCA+AGG + 11220:12488-12507 MS.gene005572:intergenic 30.0%
CATTGTATACACATTCTCTA+AGG - 11220:13599-13618 MS.gene005572:CDS 30.0%
TACTAATGAAGATAGTGTTG+TGG - 11220:12887-12906 MS.gene005572:intron 30.0%
TATATCAATCCACTAGAGTA+TGG + 11220:14129-14148 MS.gene005572:intergenic 30.0%
TATCGAGAATGCGATATATA+CGG - 11220:13628-13647 MS.gene005572:CDS 30.0%
TATTAAAGCAGCAGATGATT+TGG - 11220:13804-13823 MS.gene005572:CDS 30.0%
TCAATAGACTCACAATTTCA+AGG - 11220:12411-12430 MS.gene005572:CDS 30.0%
TTCAAAGCTACAACTATAGA+AGG + 11220:13566-13585 MS.gene005572:intergenic 30.0%
! GTTGACTTCATATTTGGAAA+TGG - 11220:13655-13674 MS.gene005572:CDS 30.0%
! TGTTTGTTGGTTAGTCAAAA+CGG + 11220:12598-12617 MS.gene005572:intergenic 30.0%
!! AAAAAGTACTTGATGATGGT+TGG - 11220:13071-13090 MS.gene005572:intron 30.0%
!! GCTTTATTTGACATCTTCAA+TGG + 11220:12813-12832 MS.gene005572:intergenic 30.0%
!! TCTATAGTTGTAGCTTTGAA+GGG - 11220:13566-13585 MS.gene005572:CDS 30.0%
!! TTCTATAGTTGTAGCTTTGA+AGG - 11220:13565-13584 MS.gene005572:CDS 30.0%
AAAGCTACAACTATAGAAGG+CGG + 11220:13563-13582 MS.gene005572:intergenic 35.0%
AACCAACAAACATGTTTGGA+AGG - 11220:12606-12625 MS.gene005572:CDS 35.0%
ACATTCAATTCAGCCACATT+TGG - 11220:13152-13171 MS.gene005572:intron 35.0%
ACTGATCCAAATCAAAACAC+TGG - 11220:13760-13779 MS.gene005572:CDS 35.0%
ATAGACTCACAATTTCAAGG+AGG - 11220:12414-12433 MS.gene005572:CDS 35.0%
ATCATCACCACTCAAGAAAT+TGG + 11220:14085-14104 MS.gene005572:intergenic 35.0%
ATTGTCGTTGTTAGTCAAGA+TGG - 11220:12918-12937 MS.gene005572:intron 35.0%
CTTTGTCTCAATCCACAATT+CGG - 11220:12442-12461 MS.gene005572:CDS 35.0%
GAACAAGATCGAAAGTAGAT+AGG + 11220:12223-12242 MS.gene005572:intergenic 35.0%
GAATTGAATTGTCCACTTAG+CGG + 11220:13721-13740 MS.gene005572:intergenic 35.0%
GACTAACCAACAAACATGTT+TGG - 11220:12602-12621 MS.gene005572:CDS 35.0%
GTATCATTCCATGTAGCAAA+TGG - 11220:12246-12265 MS.gene005572:CDS 35.0%
GTCCTTGAATATTCTTTCCA+CGG + 11220:13868-13887 MS.gene005572:intergenic 35.0%
GTTTGAACAGTTCCAACTTT+CGG + 11220:13832-13851 MS.gene005572:intergenic 35.0%
TGAAACCATCAACAACATTG+TGG + 11220:13130-13149 MS.gene005572:intergenic 35.0%
TGGCCAAGTTATCATGTTAT+CGG - 11220:14030-14049 MS.gene005572:CDS 35.0%
TTTGTCTCAATCCACAATTC+GGG - 11220:12443-12462 MS.gene005572:CDS 35.0%
! ATTTCTTGAGTGGTGATGAT+TGG - 11220:14085-14104 MS.gene005572:CDS 35.0%
! GGAACAGTTGACTTCATATT+TGG - 11220:13649-13668 MS.gene005572:CDS 35.0%
!!! GAAGTTCCAGTGTTTTGATT+TGG + 11220:13769-13788 MS.gene005572:intergenic 35.0%
!!! TTCAAATGCTTGCCATTTTG+TGG + 11220:12771-12790 MS.gene005572:intergenic 35.0%
AACCCAACCTTTCTTGAACA+AGG + 11220:12721-12740 MS.gene005572:intergenic 40.0%
AACCTTTCTTGAACAAGGCT+AGG + 11220:12716-12735 MS.gene005572:intergenic 40.0%
AAGTCTTCTGCTTGAGAAGT+TGG + 11220:12558-12577 MS.gene005572:intergenic 40.0%
AATAACACGGTTGCTAGTGA+TGG - 11220:12987-13006 MS.gene005572:intron 40.0%
ACCTTTCTTGAACAAGGCTA+GGG + 11220:12715-12734 MS.gene005572:intergenic 40.0%
AGAACATCATGGCCACAAAA+TGG - 11220:12756-12775 MS.gene005572:CDS 40.0%
ATACTCTTGACACACACCTT+TGG + 11220:13033-13052 MS.gene005572:intergenic 40.0%
ATCAACAACATTGTGGTCTC+CGG + 11220:13123-13142 MS.gene005572:intergenic 40.0%
ATGATTCTGCTAGACGCAAT+GGG - 11220:12844-12863 MS.gene005572:CDS 40.0%
GAAATTGGACACCGTGAAAT+TGG + 11220:14070-14089 MS.gene005572:intergenic 40.0%
GACCGTGGAAAGAATATTCA+AGG - 11220:13863-13882 MS.gene005572:CDS 40.0%
GACCTTCCAAACATGTTTGT+TGG + 11220:12611-12630 MS.gene005572:intergenic 40.0%
GATGATTGGATTCCTCAAAC+TGG - 11220:14099-14118 MS.gene005572:CDS 40.0%
GGAACTGTTCAAACATACCT+AGG - 11220:13838-13857 MS.gene005572:CDS 40.0%
GTTGTTAGTCAAGATGGAAG+TGG - 11220:12924-12943 MS.gene005572:intron 40.0%
TATGATTCTGCTAGACGCAA+TGG - 11220:12843-12862 MS.gene005572:CDS 40.0%
TTCAATTCCATCACTGCTCA+AGG - 11220:13733-13752 MS.gene005572:CDS 40.0%
! GCACCGATAACATGATAACT+TGG + 11220:14036-14055 MS.gene005572:intergenic 40.0%
! TCACTAGCAACCGTGTTATT+TGG + 11220:12987-13006 MS.gene005572:intergenic 40.0%
! TGTGAATTTTCAGCCGTAGT+TGG - 11220:13445-13464 MS.gene005572:CDS 40.0%
!! AGCCTTGTTCAAGAAAGGTT+GGG - 11220:12716-12735 MS.gene005572:CDS 40.0%
!! TACTTGATGATGGTTGGAGA+GGG - 11220:13077-13096 MS.gene005572:intron 40.0%
!! TAGCCTTGTTCAAGAAAGGT+TGG - 11220:12715-12734 MS.gene005572:CDS 40.0%
!! TTGTAGCTTTGAAGGGTATC+AGG - 11220:13573-13592 MS.gene005572:CDS 40.0%
AAACATACCTAGGAAGACCG+TGG - 11220:13848-13867 MS.gene005572:CDS 45.0%
ACGGTGTCCAATTTCTTGAG+TGG - 11220:14075-14094 MS.gene005572:CDS 45.0%
ACTGGTGTTCCATACTCTAG+TGG - 11220:14117-14136 MS.gene005572:CDS 45.0%
AGCTACTGCGTCATTGATAG+TGG + 11220:12958-12977 MS.gene005572:intergenic 45.0%
AGCTGCTGCACCAAATAACA+CGG - 11220:12974-12993 MS.gene005572:intron 45.0%
ATAACATTTCGCAACACCGC+TGG - 11220:13490-13509 MS.gene005572:CDS 45.0%
ATCTTCAAGAGCCCGAATTG+TGG + 11220:12457-12476 MS.gene005572:intergenic 45.0%
ATTCTTTCCACGGTCTTCCT+AGG + 11220:13858-13877 MS.gene005572:intergenic 45.0%
CAAGCAGTTGCAATGAGAAG+TGG - 11220:13526-13545 MS.gene005572:CDS 45.0%
CACTTCTCATTGCAACTGCT+TGG + 11220:13528-13547 MS.gene005572:intergenic 45.0%
GAACTTACGGGATTGCGATA+AGG + 11220:12385-12404 MS.gene005572:intergenic 45.0%
GACAGTTTCATAAACCCTGC+TGG - 11220:13910-13929 MS.gene005572:CDS 45.0%
GAGTATGGAACACCAGTTTG+AGG + 11220:14114-14133 MS.gene005572:intergenic 45.0%
GGAGACCACAATGTTGTTGA+TGG - 11220:13122-13141 MS.gene005572:intron 45.0%
GTAGAGCTGCAAATGGTTTC+TGG + 11220:12279-12298 MS.gene005572:intergenic 45.0%
GTTTACGGTAGAGCTGCAAA+TGG + 11220:12286-12305 MS.gene005572:intergenic 45.0%
GTTTCATAAACCCTGCTGGT+TGG - 11220:13914-13933 MS.gene005572:CDS 45.0%
TACCGATGCAGCCAATTTCA+CGG - 11220:14056-14075 MS.gene005572:CDS 45.0%
TACGAACCCTTGACCAACTA+CGG + 11220:13461-13480 MS.gene005572:intergenic 45.0%
TAGCTTCTGATCAGAGAGTG+AGG - 11220:12640-12659 MS.gene005572:CDS 45.0%
TATGCAGAATACGGCAACAG+AGG - 11220:13976-13995 MS.gene005572:CDS 45.0%
TGAATTGTCCACTTAGCGGA+AGG + 11220:13717-13736 MS.gene005572:intergenic 45.0%
TTTCAGCCGTAGTTGGTCAA+GGG - 11220:13452-13471 MS.gene005572:CDS 45.0%
! GATGATTTGGCTCCGAAAGT+TGG - 11220:13817-13836 MS.gene005572:CDS 45.0%
! GTGGAACACCATTTGCTACA+TGG + 11220:12257-12276 MS.gene005572:intergenic 45.0%
! TTTTCAGCCGTAGTTGGTCA+AGG - 11220:13451-13470 MS.gene005572:CDS 45.0%
!! ACCCTAGCCTTGTTCAAGAA+AGG - 11220:12711-12730 MS.gene005572:CDS 45.0%
!! GTACTTGATGATGGTTGGAG+AGG - 11220:13076-13095 MS.gene005572:intron 45.0%
AGAATACGGCAACAGAGGAG+CGG - 11220:13981-14000 MS.gene005572:CDS 50.0%
AGTTCGACCTTGAGCAGTGA+TGG + 11220:13743-13762 MS.gene005572:intergenic 50.0%
CACCGTGAAATTGGCTGCAT+CGG + 11220:14061-14080 MS.gene005572:intergenic 50.0%
GCTGGTTGGCATGAATGGAA+TGG - 11220:13928-13947 MS.gene005572:CDS 50.0%
TCCATTCATGCCAACCAGCA+GGG + 11220:13927-13946 MS.gene005572:intergenic 50.0%
TGGCCATGTCACTCGATTCA+CGG + 11220:14016-14035 MS.gene005572:intergenic 50.0%
TTCCATTCATGCCAACCAGC+AGG + 11220:13928-13947 MS.gene005572:intergenic 50.0%
! GAGCTGCAAATGGTTTCTGG+TGG + 11220:12276-12295 MS.gene005572:intergenic 50.0%
! TTGGTGTTTGCTTGGTCCAG+CGG + 11220:13509-13528 MS.gene005572:intergenic 50.0%
!! GCAACTGCTTGGTGTTTGCT+TGG + 11220:13517-13536 MS.gene005572:intergenic 50.0%
GAATACGGCAACAGAGGAGC+GGG - 11220:13982-14001 MS.gene005572:CDS 55.0%
GCACCGTGAATCGAGTGACA+TGG - 11220:14010-14029 MS.gene005572:CDS 55.0%
TATCCTCGCCTTCCGCTAAG+TGG - 11220:13706-13725 MS.gene005572:CDS 55.0%
! ACCCTGCTGGTTGGCATGAA+TGG - 11220:13923-13942 MS.gene005572:CDS 55.0%
TGTCCACTTAGCGGAAGGCG+AGG + 11220:13712-13731 MS.gene005572:intergenic 60.0%


Chromosome Type Strat End Strand Name
11220 gene 12195 14149 12195 ID=MS.gene005572
11220 mRNA 12195 14149 12195 ID=MS.gene005572.t1;Parent=MS.gene005572
11220 exon 13171 14149 13171 ID=MS.gene005572.t1.exon1;Parent=MS.gene005572.t1
11220 CDS 13171 14149 13171 ID=cds.MS.gene005572.t1;Parent=MS.gene005572.t1
11220 exon 12195 12886 12195 ID=MS.gene005572.t1.exon2;Parent=MS.gene005572.t1
11220 CDS 12195 12886 12195 ID=cds.MS.gene005572.t1;Parent=MS.gene005572.t1
Gene Sequence

>MS.gene005572

ATGGCTCTCAAACACAAAACTATTGCCTATCTACTTTCGATCTTGTTCTTTGTATCATTCCATGTAGCAAATGGTGTTCCACCAGAAACCATTTGCAGCTCTACCGTAAACCCTACTTATTGTAAAAACGTATTTGCCAATCAAAATGGAAACATTTATGACTATGGTAAAATTTCAATTCGAAAATCCTTATCGCAATCCCGTAAGTTCATGAATTCAATAGACTCACAATTTCAAGGAGGTTCATCTTTGTCTCAATCCACAATTCGGGCTCTTGAAGATTGTCGATTCCTTGCTGAATTGAGTTTTGAATACTTATCAAACACCTATACAACAACAAATCAATCTAGTAATGTTCTTCCAACTTCTCAAGCAGAAGACTTTGAAACTTTTCTAAGTGCCGTTTTGACTAACCAACAAACATGTTTGGAAGGTCTAAACACTATAGCTTCTGATCAGAGAGTGAGGAACGACTTAACGTCATCGATCTCTGATGACATGAAGCTTCATAGTGTCACCCTAGCCTTGTTCAAGAAAGGTTGGGTTCCTAAAAGTAAAATAAGAACATCATGGCCACAAAATGGCAAGCATTTGAATTTCAAAAATGGTCGTTTGCCATTGAAGATGTCAAATAAAGCACGTGCTATTTATGATTCTGCTAGACGCAATGGGAGAAAACTACTTCAAACTAATACTAATGAAGATAGTGTTGTGGTGAGTGATATTGTCGTTGTTAGTCAAGATGGAAGTGGAAACTTTACCACTATCAATGACGCAGTAGCTGCTGCACCAAATAACACGGTTGCTAGTGATGGATACTTCTTCATATTTATCACCAAAGGTGTGTGTCAAGAGTATGTATCTATACCCAAAAACAAAAAGTACTTGATGATGGTTGGAGAGGGAATCAATCAAACAGTTATCACCGGAGACCACAATGTTGTTGATGGTTTCACAACATTCAATTCAGCCACATTTGGTAAGCAAATTTAATACTTGGACATATTAAATATACTATTAACAAAAAATGGTATATACCGATTTTTAAACGTATATTTGATGAATGGTTTGAAAATTTTGTCGCTAATGTGATTGAAAATTTCCGACTTTTACAATGATTGCTAAAAGGCAATTTTTTTTTTTTAGTTTACAATTACTCACACAAATAGTGTTAATATATTTTATATTGTGATTTATGGCATGCATGAAGATAATCTATATGTTAAAAATTTCACAAATTTGACGTTTCTTGTGAATTTTCAGCCGTAGTTGGTCAAGGGTTCGTAGCAGTTAACATAACATTTCGCAACACCGCTGGACCAAGCAAACACCAAGCAGTTGCAATGAGAAGTGGAGCAGATATGTCCGCCTTCTATAGTTGTAGCTTTGAAGGGTATCAGGACACATTGTATACACATTCTCTAAGGCAGTTTTATCGAGAATGCGATATATACGGAACAGTTGACTTCATATTTGGAAATGGTGCCGTTGTTTTGCAAAATTGTAACATTTATCCTCGCCTTCCGCTAAGTGGACAATTCAATTCCATCACTGCTCAAGGTCGAACTGATCCAAATCAAAACACTGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCGAAAGTTGGAACTGTTCAAACATACCTAGGAAGACCGTGGAAAGAATATTCAAGGACAGTTTTTATGCAATCTTTCATGGACAGTTTCATAAACCCTGCTGGTTGGCATGAATGGAATGGTGATTTTGCATTGAATACTTTGTACTATGCAGAATACGGCAACAGAGGAGCGGGTTCAAGCACCGTGAATCGAGTGACATGGCCAAGTTATCATGTTATCGGTGCTACCGATGCAGCCAATTTCACGGTGTCCAATTTCTTGAGTGGTGATGATTGGATTCCTCAAACTGGTGTTCCATACTCTAGTGGATTGATATAG
Protein sequence

>MS.gene005572.t1

MALKHKTIAYLLSILFFVSFHVANGVPPETICSSTVNPTYCKNVFANQNGNIYDYGKISIRKSLSQSRKFMNSIDSQFQGGSSLSQSTIRALEDCRFLAELSFEYLSNTYTTTNQSSNVLPTSQAEDFETFLSAVLTNQQTCLEGLNTIASDQRVRNDLTSSISDDMKLHSVTLALFKKGWVPKSKIRTSWPQNGKHLNFKNGRLPLKMSNKARAIYDSARRNGRKLLQTNTNEDSVVVSDIVVVSQDGSGNFTTINDAVAAAPNNTVASDGYFFIFITKGVCQEYVSIPKNKKYLMMVGEGINQTVITGDHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVAMRSGADMSAFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINPAGWHEWNGDFALNTLYYAEYGNRGAGSSTVNRVTWPSYHVIGATDAANFTVSNFLSGDDWIPQTGVPYSSGLI