AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22948

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22948.t1 MTR_7g108900 95.936 566 21 1 6 571 1 564 0.0 1105
MS.gene22948.t1 MTR_1g088020 64.855 552 189 4 18 567 7 555 0.0 724
MS.gene22948.t1 MTR_1g054880 63.815 561 193 7 6 563 1 554 0.0 716
MS.gene22948.t1 MTR_1g088225 64.493 552 189 5 18 567 7 553 0.0 715
MS.gene22948.t1 MTR_7g108890 64.870 538 183 5 32 567 29 562 0.0 709
MS.gene22948.t1 MTR_7g108875 62.011 537 194 7 35 567 34 564 0.0 671
MS.gene22948.t1 MTR_0458s0010 53.142 557 209 10 18 567 7 518 0.0 541
MS.gene22948.t1 MTR_1g083520 51.254 558 226 10 12 563 7 524 0.0 534
MS.gene22948.t1 MTR_8g042910 49.631 542 249 11 43 567 78 612 7.03e-169 493
MS.gene22948.t1 MTR_3g010770 48.346 544 255 12 43 567 39 575 1.22e-164 481
MS.gene22948.t1 MTR_0458s0030 78.030 264 58 0 304 567 51 314 2.14e-153 442
MS.gene22948.t1 MTR_1g088040 78.030 264 58 0 304 567 51 314 2.14e-153 442
MS.gene22948.t1 MTR_7g108905 45.599 568 272 10 13 568 15 557 2.22e-148 439
MS.gene22948.t1 MTR_2g044810 41.651 533 266 8 36 563 38 530 1.05e-135 405
MS.gene22948.t1 MTR_4g025730 42.832 565 258 16 10 567 3 509 9.96e-135 402
MS.gene22948.t1 MTR_4g025690 43.262 564 255 17 16 567 3 513 1.78e-134 401
MS.gene22948.t1 MTR_8g104655 41.840 576 280 11 1 563 4 537 4.07e-134 402
MS.gene22948.t1 MTR_7g050980 42.912 522 255 11 50 567 73 555 5.05e-128 386
MS.gene22948.t1 MTR_8g104645 57.367 319 132 2 246 563 53 368 1.66e-127 379
MS.gene22948.t1 MTR_2g044880 44.538 476 216 9 99 567 91 525 1.30e-126 382
MS.gene22948.t1 MTR_7g050870 42.278 518 247 10 60 567 79 554 3.82e-126 382
MS.gene22948.t1 MTR_4g124520 44.989 449 208 7 120 563 103 517 2.20e-125 379
MS.gene22948.t1 MTR_8g023310 41.144 542 276 12 40 563 69 585 2.84e-125 380
MS.gene22948.t1 MTR_1g008140 40.215 557 270 14 43 569 86 609 1.04e-124 380
MS.gene22948.t1 MTR_7g050950 42.600 500 246 8 71 567 92 553 1.27e-124 377
MS.gene22948.t1 MTR_4g087980 41.344 491 247 7 79 567 65 516 9.85e-121 366
MS.gene22948.t1 MTR_4g087970 42.797 472 233 8 99 568 82 518 1.94e-120 365
MS.gene22948.t1 MTR_4g025670 42.886 492 218 9 83 562 44 484 2.66e-120 364
MS.gene22948.t1 MTR_4g035980 42.917 480 237 8 86 563 91 535 4.96e-120 365
MS.gene22948.t1 MTR_3g091380 39.711 554 271 13 43 569 82 599 1.68e-117 361
MS.gene22948.t1 MTR_3g010780 39.513 534 271 13 41 563 78 570 4.85e-117 358
MS.gene22948.t1 MTR_8g042900 39.187 541 280 10 40 567 77 581 8.74e-117 358
MS.gene22948.t1 MTR_3g008720 38.272 567 290 13 15 567 7 527 1.03e-116 356
MS.gene22948.t1 MTR_3g008700 41.578 469 227 9 103 567 102 527 1.37e-116 356
MS.gene22948.t1 MTR_3g008640 37.919 567 292 13 15 567 7 527 1.63e-116 356
MS.gene22948.t1 MTR_3g033690 41.788 481 209 10 103 567 101 526 5.06e-116 354
MS.gene22948.t1 MTR_7g053360 40.966 476 232 10 96 567 97 527 3.38e-115 352
MS.gene22948.t1 MTR_4g124550 39.057 530 289 8 42 562 84 588 4.48e-111 344
MS.gene22948.t1 MTR_7g112580 40.084 474 243 10 100 568 106 543 8.19e-111 342
MS.gene22948.t1 MTR_8g104580 39.479 537 247 12 40 563 25 496 1.14e-108 335
MS.gene22948.t1 MTR_2g044810 57.258 248 106 0 316 563 214 461 1.40e-103 320
MS.gene22948.t1 MTR_1g086210 38.046 481 258 8 100 563 108 565 8.61e-102 319
MS.gene22948.t1 MTR_8g023150 36.765 544 281 14 40 563 78 578 2.57e-100 316
MS.gene22948.t1 MTR_0618s0020 61.607 224 85 1 341 563 1 224 3.39e-98 298
MS.gene22948.t1 MTR_3g095920 35.377 571 301 17 17 560 28 557 7.10e-95 301
MS.gene22948.t1 MTR_8g093460 48.903 319 146 6 249 556 228 540 9.46e-95 300
MS.gene22948.t1 MTR_1g086190 34.011 541 306 11 42 563 51 559 4.26e-94 299
MS.gene22948.t1 MTR_2g044660 48.867 309 150 3 254 562 327 627 1.43e-93 300
MS.gene22948.t1 MTR_7g110560 34.328 536 310 11 40 563 40 545 2.92e-93 296
MS.gene22948.t1 MTR_7g110440 34.058 552 308 11 42 563 45 570 1.34e-92 295
MS.gene22948.t1 MTR_1g083510 45.223 314 162 3 254 563 272 579 7.04e-91 291
MS.gene22948.t1 MTR_7g110490 33.996 553 309 11 40 562 43 569 8.42e-90 288
MS.gene22948.t1 MTR_7g110510 33.996 553 309 11 40 562 43 569 8.42e-90 288
MS.gene22948.t1 MTR_2g436040 32.750 571 326 14 9 563 14 542 1.88e-89 288
MS.gene22948.t1 MTR_7g112590 32.537 544 323 11 40 563 60 579 1.91e-88 285
MS.gene22948.t1 MTR_1g083470 42.812 313 173 2 254 563 257 566 3.74e-87 281
MS.gene22948.t1 MTR_1g083500 42.812 313 173 2 254 563 257 566 3.74e-87 281
MS.gene22948.t1 MTR_4g005180 31.502 546 324 11 35 563 41 553 3.67e-86 278
MS.gene22948.t1 MTR_4g005170 31.502 546 324 11 35 563 59 571 1.34e-85 279
MS.gene22948.t1 MTR_1g083490 31.319 546 325 11 35 563 59 571 2.25e-85 277
MS.gene22948.t1 MTR_5g083620 43.492 315 165 5 254 563 46 352 2.47e-84 267
MS.gene22948.t1 MTR_4g120290 31.341 552 308 14 40 563 60 568 2.72e-82 268
MS.gene22948.t1 MTR_8g088610 41.667 312 174 5 255 563 66 372 8.70e-81 258
MS.gene22948.t1 MTR_4g120280 30.370 540 329 12 40 563 60 568 8.95e-80 262
MS.gene22948.t1 MTR_7g110420 33.533 501 270 10 100 563 108 582 3.04e-78 258
MS.gene22948.t1 MTR_7g110430 30.797 552 292 12 42 563 45 536 4.98e-72 240
MS.gene22948.t1 MTR_2g105560 38.462 312 173 6 254 563 41 335 8.39e-71 231
MS.gene22948.t1 MTR_7g107180 40.446 314 166 7 254 563 7 303 2.44e-70 229
MS.gene22948.t1 MTR_2g436050 30.571 543 319 14 40 563 57 560 2.51e-70 236
MS.gene22948.t1 MTR_7g111560 28.464 534 328 13 41 563 62 552 1.08e-65 224
MS.gene22948.t1 MTR_6g088810 35.621 306 168 8 262 556 90 377 2.86e-50 178
MS.gene22948.t1 MTR_8g102380 33.968 315 177 9 255 556 81 377 3.35e-49 175
MS.gene22948.t1 MTR_6g042660 35.816 282 154 7 254 530 37 296 5.01e-49 173
MS.gene22948.t1 MTR_6g012800 32.219 329 186 8 253 563 5 314 5.77e-49 172
MS.gene22948.t1 MTR_1g086540 34.936 312 173 8 256 556 52 344 8.92e-49 173
MS.gene22948.t1 MTR_6g024165 35.238 315 173 9 253 556 40 334 1.29e-48 172
MS.gene22948.t1 MTR_7g011530 33.131 329 183 9 253 563 5 314 4.72e-47 167
MS.gene22948.t1 MTR_7g102600 33.117 308 184 5 256 556 101 393 9.13e-46 166
MS.gene22948.t1 MTR_7g092780 33.866 313 182 6 254 556 90 387 1.46e-44 162
MS.gene22948.t1 MTR_2g033970 32.907 313 180 8 254 557 56 347 1.03e-43 159
MS.gene22948.t1 MTR_1g033050 33.648 318 183 8 247 556 11 308 1.18e-43 158
MS.gene22948.t1 MTR_6g042690 34.722 288 154 8 254 530 39 303 3.96e-43 157
MS.gene22948.t1 MTR_5g083590 30.032 313 165 5 254 565 7 266 4.90e-43 155
MS.gene22948.t1 MTR_2g039530 37.884 293 146 9 254 535 52 319 8.37e-43 156
MS.gene22948.t1 MTR_8g102380 36.015 261 138 8 255 502 81 325 1.19e-41 153
MS.gene22948.t1 MTR_5g095490 33.333 309 176 7 260 556 67 357 8.80e-41 151
MS.gene22948.t1 MTR_5g012600 30.915 317 187 8 253 556 62 359 1.68e-39 148
MS.gene22948.t1 MTR_4g124740 31.210 314 179 10 253 556 53 339 1.43e-38 145
MS.gene22948.t1 MTR_5g093970 32.166 314 195 6 244 556 33 329 2.12e-38 144
MS.gene22948.t1 MTR_5g088300 31.529 314 190 7 244 556 27 316 1.28e-37 142
MS.gene22948.t1 MTR_2g436600 31.348 319 168 12 254 557 55 337 2.67e-36 139
MS.gene22948.t1 MTR_5g088290 30.247 324 200 8 244 566 38 336 1.11e-35 137
MS.gene22948.t1 MTR_5g088280 30.341 323 200 8 244 566 29 326 7.60e-35 134
MS.gene22948.t1 MTR_4g051810 30.841 321 190 9 244 559 27 320 2.32e-33 130
MS.gene22948.t1 MTR_8g036225 29.467 319 188 8 253 559 32 325 3.14e-32 127
MS.gene22948.t1 MTR_4g074290 30.351 313 188 10 253 556 70 361 5.56e-32 127
MS.gene22948.t1 MTR_2g073390 30.032 313 189 10 253 556 70 361 4.63e-31 124
MS.gene22948.t1 MTR_0009s0350 29.299 314 190 11 253 556 70 361 1.82e-27 114
MS.gene22948.t1 MTR_0009s0340 29.299 314 190 11 253 556 70 361 1.82e-27 114
MS.gene22948.t1 MTR_6g025590 38.323 167 91 4 253 411 48 210 1.07e-25 106
MS.gene22948.t1 MTR_0408s0030 40.385 104 51 2 427 530 31 123 1.04e-18 83.6
MS.gene22948.t1 MTR_7g102580 45.055 91 40 2 327 412 68 153 7.23e-16 75.5
MS.gene22948.t1 MTR_4g130790 30.539 167 104 4 283 441 50 212 1.09e-14 74.7
MS.gene22948.t1 MTR_6g024200 30.233 172 99 6 386 556 125 276 5.20e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22948.t1 AT4G02330 58.669 571 208 10 20 567 6 571 0.0 659
MS.gene22948.t1 AT1G02810 56.620 574 223 10 19 567 5 577 0.0 624
MS.gene22948.t1 AT2G47550 56.261 551 222 7 24 567 20 558 0.0 618
MS.gene22948.t1 AT3G10720 46.654 538 261 8 43 563 83 611 8.28e-163 478
MS.gene22948.t1 AT5G04970 45.926 540 262 11 43 563 88 616 7.80e-156 460
MS.gene22948.t1 AT2G26440 42.144 541 275 10 35 563 29 543 1.26e-135 405
MS.gene22948.t1 AT5G51490 40.713 533 274 9 43 567 38 536 1.02e-128 387
MS.gene22948.t1 AT2G45220 46.398 472 193 13 100 567 96 511 9.09e-128 384
MS.gene22948.t1 AT3G60730 44.937 474 225 10 100 563 68 515 3.78e-127 383
MS.gene22948.t1 AT5G51500 40.410 537 270 11 43 567 42 540 1.47e-122 372
MS.gene22948.t1 AT1G11580 40.183 545 272 10 33 563 49 553 3.97e-122 371
MS.gene22948.t1 AT1G11580 40.183 545 272 10 33 563 70 574 1.08e-121 371
MS.gene22948.t1 AT3G43270 40.248 564 279 14 18 569 10 527 3.38e-121 368
MS.gene22948.t1 AT4G02300 41.894 549 281 14 17 563 16 528 1.23e-120 367
MS.gene22948.t1 AT1G23200 40.700 543 272 12 41 562 36 549 1.02e-117 360
MS.gene22948.t1 AT4G02320 42.566 491 232 10 89 567 66 518 1.08e-117 358
MS.gene22948.t1 AT1G53830 41.091 550 269 11 40 563 63 583 1.29e-117 361
MS.gene22948.t1 AT3G10720 61.390 259 100 0 309 567 1 259 1.66e-117 349
MS.gene22948.t1 AT4G33220 42.680 485 226 8 99 563 67 519 5.85e-117 357
MS.gene22948.t1 AT5G53370 38.361 537 291 10 43 568 79 586 7.98e-117 358
MS.gene22948.t1 AT5G53370 38.361 537 291 10 43 568 115 622 1.95e-116 359
MS.gene22948.t1 AT4G00190 40.189 530 243 15 42 563 7 470 9.43e-116 352
MS.gene22948.t1 AT3G14310 40.293 546 281 12 43 563 63 588 2.21e-114 352
MS.gene22948.t1 AT4G33220 54.341 311 137 2 254 563 92 398 2.51e-114 346
MS.gene22948.t1 AT5G04960 37.782 532 289 13 37 563 66 560 4.95e-114 351
MS.gene22948.t1 AT3G05620 43.590 429 203 5 139 567 152 541 1.23e-113 349
MS.gene22948.t1 AT3G49220 43.439 442 212 8 137 568 184 597 1.60e-113 350
MS.gene22948.t1 AT2G26450 38.776 539 272 15 40 562 110 606 7.65e-113 349
MS.gene22948.t1 AT3G49220 43.084 441 223 7 133 568 225 642 8.82e-113 350
MS.gene22948.t1 AT2G43050 41.200 500 236 14 70 563 65 512 9.49e-113 346
MS.gene22948.t1 AT3G59010 42.449 490 231 13 81 563 79 524 1.51e-112 346
MS.gene22948.t1 AT3G10710 37.269 542 283 13 32 563 63 557 3.20e-110 341
MS.gene22948.t1 AT5G27870 36.599 541 298 9 42 571 60 566 9.41e-107 337
MS.gene22948.t1 AT4G33230 36.630 546 283 12 40 562 96 601 7.40e-105 328
MS.gene22948.t1 AT3G05610 36.007 536 310 8 42 571 61 569 6.73e-104 328
MS.gene22948.t1 AT1G53840 36.066 549 295 14 38 561 64 581 1.23e-103 324
MS.gene22948.t1 AT3G47400 41.102 472 235 11 100 563 154 590 2.07e-103 324
MS.gene22948.t1 AT5G20860 37.638 542 271 15 43 563 39 534 7.98e-102 318
MS.gene22948.t1 AT3G27980 49.518 311 150 3 254 563 189 493 1.38e-100 314
MS.gene22948.t1 AT4G03930 49.518 311 150 3 254 563 216 520 1.06e-99 312
MS.gene22948.t1 AT3G06830 40.774 439 235 7 135 567 149 568 3.02e-99 312
MS.gene22948.t1 AT5G49180 39.462 446 221 8 135 564 155 567 1.11e-98 311
MS.gene22948.t1 AT1G11590 49.196 311 151 3 254 563 216 520 1.09e-97 307
MS.gene22948.t1 AT3G14300 36.612 549 280 15 40 562 460 966 3.12e-92 304
MS.gene22948.t1 AT5G09760 35.949 548 266 21 43 555 49 546 3.86e-86 278
MS.gene22948.t1 AT5G09760 35.949 548 266 21 43 555 75 572 8.20e-86 278
MS.gene22948.t1 AT1G11370 50.813 246 117 1 254 499 46 287 2.94e-84 264
MS.gene22948.t1 AT5G20860 34.857 525 247 14 43 546 39 489 5.11e-82 266
MS.gene22948.t1 AT5G64640 33.952 539 292 16 43 555 97 597 1.98e-80 264
MS.gene22948.t1 AT4G15980 44.051 311 169 2 254 563 392 698 2.47e-79 264
MS.gene22948.t1 AT4G15980 44.051 311 169 2 254 563 402 708 4.96e-79 263
MS.gene22948.t1 AT2G47030 43.038 316 172 4 250 562 273 583 4.97e-75 249
MS.gene22948.t1 AT2G47040 41.925 322 179 4 244 562 274 590 1.72e-72 243
MS.gene22948.t1 AT3G62170 42.444 311 171 4 255 562 278 583 5.26e-71 239
MS.gene22948.t1 AT5G19730 35.238 315 175 8 253 556 85 381 1.52e-51 181
MS.gene22948.t1 AT2G21610 33.553 304 181 7 253 556 55 337 3.83e-49 174
MS.gene22948.t1 AT2G21610 33.553 304 181 7 253 556 50 332 4.51e-49 174
MS.gene22948.t1 AT1G05310 35.127 316 174 7 254 556 91 388 6.51e-48 172
MS.gene22948.t1 AT3G29090 33.636 330 180 10 253 563 6 315 3.84e-47 167
MS.gene22948.t1 AT2G36710 32.595 316 191 5 253 561 90 390 9.86e-47 169
MS.gene22948.t1 AT2G36700 32.686 309 187 6 253 556 41 333 3.40e-46 166
MS.gene22948.t1 AT5G18990 37.113 291 149 8 254 530 29 299 1.01e-45 164
MS.gene22948.t1 AT3G17060 31.949 313 183 7 254 557 46 337 1.14e-45 164
MS.gene22948.t1 AT3G24130 33.127 323 180 8 254 562 34 334 1.55e-44 161
MS.gene22948.t1 AT2G19150 31.611 329 196 7 244 563 31 339 2.56e-44 160
MS.gene22948.t1 AT5G47500 31.329 316 187 7 253 556 60 357 3.46e-41 153
MS.gene22948.t1 AT5G07430 30.769 338 208 9 223 556 40 355 8.78e-40 149
MS.gene22948.t1 AT2G47280 31.646 316 186 8 254 559 35 330 8.48e-38 142
MS.gene22948.t1 AT1G44980 42.857 189 99 3 237 421 58 241 1.14e-37 140
MS.gene22948.t1 AT5G55590 31.975 319 187 7 250 556 78 378 2.60e-37 142
MS.gene22948.t1 AT2G19150 32.959 267 152 6 244 501 31 279 3.56e-37 139
MS.gene22948.t1 AT5G55590 34.091 264 146 6 250 501 78 325 2.43e-36 139
MS.gene22948.t1 AT5G07420 29.846 325 196 10 241 556 54 355 4.09e-35 136
MS.gene22948.t1 AT5G26810 30.539 334 195 10 243 559 23 336 9.83e-35 134
MS.gene22948.t1 AT5G61680 29.260 311 193 9 253 556 68 358 1.25e-31 126
MS.gene22948.t1 AT1G69940 26.861 309 202 8 253 556 66 355 1.27e-29 120
MS.gene22948.t1 AT5G07410 27.564 312 196 9 253 556 66 355 1.46e-29 120
MS.gene22948.t1 AT3G49220 28.502 207 121 6 137 339 229 412 1.27e-14 76.6

Find 120 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAAGAATGCGACATTTA+TGG 0.109618 7.3:+5994577 MS.gene22948:CDS
GGAACGATAGATTTCATATT+TGG 0.118210 7.3:+5994598 MS.gene22948:CDS
GATGATTTACAAATGGTTTC+TGG 0.167290 7.3:-5993270 None:intergenic
GTTGCATTGATAGTGTTATT+TGG 0.255173 7.3:-5993978 None:intergenic
TTTCCAATCCATTGTTATAA+AGG 0.270242 7.3:-5993160 None:intergenic
ACCAAGCTGGTTGGTCCATT+TGG 0.308991 7.3:+5994872 MS.gene22948:CDS
TGGTTATAACCGCACTTAGA+AGG 0.312079 7.3:-5993575 None:intergenic
GTTCGATTTGACATCTTCAT+AGG 0.319362 7.3:-5993804 None:intergenic
GTCCATCTAAACATGTTTGA+TGG 0.326254 7.3:-5993599 None:intergenic
GTTGTAAGTTTGCGAATATA+AGG 0.334858 7.3:-5995075 None:intergenic
TGCTTGGAATTTGCTTGGCC+TGG 0.339642 7.3:-5994458 None:intergenic
TTGTGCAATAAGATGGATAT+TGG 0.348535 7.3:-5993293 None:intergenic
ATCACCAACGCTGCGATTGC+CGG 0.362908 7.3:-5994117 None:intergenic
AACCATCAAACATGTTTAGA+TGG 0.386604 7.3:+5993597 MS.gene22948:CDS
AACACTATCAATGCAACAAA+TGG 0.394173 7.3:+5993984 MS.gene22948:CDS
TTCTATCGTTGCAGCTTTGA+AGG 0.399049 7.3:+5994514 MS.gene22948:CDS
TTGCAGTTAACATAACATTT+CGG 0.401151 7.3:+5994428 MS.gene22948:CDS
AAAGCTGCAACGATAGAAAC+TGG 0.404108 7.3:-5994509 None:intergenic
ATTGTTGTTGTTAGTCAAGA+TGG 0.407165 7.3:+5993912 MS.gene22948:CDS
ACTTTCAATTCCCCAACATT+TGG 0.407636 7.3:+5994149 MS.gene22948:CDS
TGCAAAATCACCACTCCAAA+TGG 0.408306 7.3:-5994887 None:intergenic
TGATGATGAAAGTGGTGTTT+TGG 0.415339 7.3:+5993881 MS.gene22948:CDS
TTCATGATATTTATCAAAGA+AGG 0.417303 7.3:+5994011 MS.gene22948:CDS
GAATGTCTGGTTGCCTCAAA+TGG 0.421867 7.3:+5995047 MS.gene22948:CDS
CACTTCTCATTGCAACTGCT+TGG 0.424142 7.3:-5994474 None:intergenic
GCAACTGCTTGGAATTTGCT+TGG 0.430878 7.3:-5994463 None:intergenic
TGATCTGTTCACAAAGGGTT+GGG 0.445852 7.3:+5993710 MS.gene22948:CDS
CCAAAGTCCATGACTTTGCC+AGG 0.452848 7.3:+5993337 MS.gene22948:CDS
CTCCTCCGCCTCTTGATGAA+TGG 0.453241 7.3:-5993839 None:intergenic
ATCTAAACATGTTTGATGGT+TGG 0.462158 7.3:-5993595 None:intergenic
AAGACATTATGGGATTCTAC+AGG 0.463158 7.3:+5993750 MS.gene22948:CDS
TTTAATAGTGCAATTGTGAA+TGG 0.466964 7.3:-5994737 None:intergenic
TTTGTAGCTGTGGTAGCACC+AGG 0.467786 7.3:+5994400 MS.gene22948:intron
TCTAATAGAATTACATGGCC+AGG 0.468711 7.3:+5994964 MS.gene22948:CDS
GATTCTACAGGGTTGCATCC+TGG 0.474549 7.3:+5993762 MS.gene22948:CDS
AGTAGAGTTGTGCAATAAGA+TGG 0.475382 7.3:-5993300 None:intergenic
TATGCAGAGTTTGATAATAG+AGG 0.477171 7.3:+5994925 MS.gene22948:CDS
TGTCCTTTATAACAATGGAT+TGG 0.477658 7.3:+5993157 MS.gene22948:CDS
AACAGTAAAATTTGAAGCAT+CGG 0.478335 7.3:-5995007 None:intergenic
CCAGCTGAAGATTTATCTCC+AGG 0.484382 7.3:+5994760 MS.gene22948:CDS
TGTGCAATAAGATGGATATT+GGG 0.485618 7.3:-5993292 None:intergenic
TTCAATCCCATCACTGCTCA+AGG 0.485800 7.3:+5994682 MS.gene22948:CDS
GTTTGCTATCATTAGAGAGT+TGG 0.490337 7.3:-5993671 None:intergenic
TTGCATCCTGGTTTCAGAAA+CGG 0.494005 7.3:+5993774 MS.gene22948:CDS
AAATGGTTTCTGGAGGTACA+AGG 0.495046 7.3:-5993260 None:intergenic
CCTGGAGATAAATCTTCAGC+TGG 0.495364 7.3:-5994760 None:intergenic
TCACTTGATCTGTTCACAAA+GGG 0.496891 7.3:+5993705 MS.gene22948:CDS
CCTGGCAAAGTCATGGACTT+TGG 0.499519 7.3:-5993337 None:intergenic
GTTCTTGAATACTCTTTCCA+TGG 0.499574 7.3:-5994814 None:intergenic
TTGCATGTCCTTTATAACAA+TGG 0.500796 7.3:+5993152 None:intergenic
GTACGGTGAAAACTTACCTT+GGG 0.500841 7.3:+5994788 MS.gene22948:CDS
GGCAATCGCAGCGTTGGTGA+TGG 0.501373 7.3:+5994119 MS.gene22948:CDS
ATATTGGGATGATTTACAAA+TGG 0.502972 7.3:-5993277 None:intergenic
TTGATCTGTTCACAAAGGGT+TGG 0.516081 7.3:+5993709 MS.gene22948:CDS
GTAGCTAGAAATGCAAAGAA+TGG 0.518895 7.3:-5993225 None:intergenic
GGTTATAACCGCACTTAGAA+GGG 0.519666 7.3:-5993574 None:intergenic
TTGTTGTTGTTAGTCAAGAT+GGG 0.520771 7.3:+5993913 MS.gene22948:CDS
AATGTCTGGTTGCCTCAAAT+GGG 0.520897 7.3:+5995048 MS.gene22948:CDS
TATCCTCGTCTTCCCCTACA+TGG 0.520922 7.3:+5994655 MS.gene22948:CDS
ATGTTAACTGCAACAAATCC+TGG 0.525996 7.3:-5994418 None:intergenic
GGTACGCCCTTGAGCAGTGA+TGG 0.527914 7.3:-5994689 None:intergenic
TAACATTTCGGAACACAGCC+AGG 0.529461 7.3:+5994440 MS.gene22948:CDS
ATATAAGGAACTCCCATTTG+AGG 0.532255 7.3:-5995060 None:intergenic
ATCGCAGCGTTGGTGATGGA+TGG 0.532461 7.3:+5994123 MS.gene22948:CDS
GGGATTGAATTGTCCATGTA+GGG 0.533821 7.3:-5994668 None:intergenic
GGGTTTGAGTATCATCAACT+TGG 0.535153 7.3:-5993554 None:intergenic
GTCATTTACCATTCATCAAG+AGG 0.540411 7.3:+5993831 MS.gene22948:CDS
TACCATTCATCAAGAGGCGG+AGG 0.543436 7.3:+5993837 MS.gene22948:CDS
CTATTAGAAGTGTCTGCACC+AGG 0.544701 7.3:-5994949 None:intergenic
TCCAAATGGACCAACCAGCT+TGG 0.553536 7.3:-5994873 None:intergenic
TTGAGAACCTGGCAAAGTCA+TGG 0.555086 7.3:-5993344 None:intergenic
TGATGAATGGTAAATGACTC+TGG 0.556218 7.3:-5993826 None:intergenic
CAAGCAGTTGCAATGAGAAG+TGG 0.557342 7.3:+5994475 MS.gene22948:CDS
AAACTTACCTTGGGAGGCCA+TGG 0.557870 7.3:+5994797 MS.gene22948:CDS
AAGCAGTTGCAATGAGAAGT+GGG 0.559018 7.3:+5994476 MS.gene22948:CDS
GAAGATTTATCTCCAGGTGT+TGG 0.559516 7.3:+5994766 MS.gene22948:CDS
GGTACGGTGAAAACTTACCT+TGG 0.560722 7.3:+5994787 MS.gene22948:CDS
CTAGAAATGCAAAGAATGGA+AGG 0.560969 7.3:-5993221 None:intergenic
TTTATCTCCAGGTGTTGGTA+CGG 0.566070 7.3:+5994771 MS.gene22948:CDS
GACAATTTGATTGACCAAGC+TGG 0.571835 7.3:+5994859 MS.gene22948:CDS
TCTATCGTTGCAGCTTTGAA+GGG 0.574560 7.3:+5994515 MS.gene22948:CDS
AATGTGTATAGAGAGTATCT+TGG 0.575765 7.3:-5994540 None:intergenic
GATTGCCGGTGATAACTGTT+CGG 0.576224 7.3:-5994103 None:intergenic
ATCACCGGCAATCGCAGCGT+TGG 0.580373 7.3:+5994113 MS.gene22948:CDS
TTCACTTGATCTGTTCACAA+AGG 0.580756 7.3:+5993704 MS.gene22948:CDS
TGGGATTGAATTGTCCATGT+AGG 0.584046 7.3:-5994669 None:intergenic
GAGTTTGATAATAGAGGACC+TGG 0.590308 7.3:+5994931 MS.gene22948:CDS
GTACGCCCTTGAGCAGTGAT+GGG 0.591834 7.3:-5994688 None:intergenic
GCATTAATCACATGGTACCC+TGG 0.592231 7.3:-5994982 None:intergenic
CGGTGAAAACTTACCTTGGG+AGG 0.595512 7.3:+5994791 MS.gene22948:CDS
TGTCTCTATCCCTCAAAACA+AGG 0.597549 7.3:+5994049 MS.gene22948:CDS
CATCGGTAGCATTAATCACA+TGG 0.599691 7.3:-5994990 None:intergenic
AAGGCGTATCTGATGATGAT+CGG 0.600368 7.3:+5994068 MS.gene22948:CDS
ATTTGATTGACCAAGCTGGT+TGG 0.601009 7.3:+5994863 MS.gene22948:CDS
ACTCTTTCCATGGCCTCCCA+AGG 0.601369 7.3:-5994804 None:intergenic
GATTTACAAATGGTTTCTGG+AGG 0.601680 7.3:-5993267 None:intergenic
CTAATAGAATTACATGGCCA+GGG 0.607705 7.3:+5994965 MS.gene22948:CDS
GGTTTGAGTATCATCAACTT+GGG 0.609372 7.3:-5993553 None:intergenic
GTTGTTAGTCAAGATGGGAG+TGG 0.612193 7.3:+5993918 MS.gene22948:CDS
AATCTACCGTTTCTGAAACC+AGG 0.614566 7.3:-5993780 None:intergenic
TTGAGTATCATCAACTTGGG+AGG 0.618524 7.3:-5993550 None:intergenic
ATCAACCGAACAGTTATCAC+CGG 0.619802 7.3:+5994098 MS.gene22948:CDS
AATGGTTTCTGGAGGTACAA+GGG 0.621839 7.3:-5993259 None:intergenic
GAATGTAGTAGCAATAGAGA+AGG 0.624802 7.3:-5993184 None:intergenic
TACCGATCCAAATCAAAACA+CGG 0.627322 7.3:+5994708 MS.gene22948:CDS
AGACATTATGGGATTCTACA+GGG 0.628316 7.3:+5993751 MS.gene22948:CDS
GCTGGTTGGTCCATTTGGAG+TGG 0.634601 7.3:+5994877 MS.gene22948:CDS
TCAATCCCATCACTGCTCAA+GGG 0.638656 7.3:+5994683 MS.gene22948:CDS
ACCGATCCAAATCAAAACAC+GGG 0.644249 7.3:+5994709 MS.gene22948:CDS
TATCTGATGATGATCGGAGA+CGG 0.644508 7.3:+5994074 MS.gene22948:CDS
ACACTTCTAATAGAATTACA+TGG 0.644693 7.3:+5994959 MS.gene22948:CDS
ATTTACCATTCATCAAGAGG+CGG 0.653988 7.3:+5993834 MS.gene22948:CDS
TACTCAAACCCTTCTAAGTG+CGG 0.659867 7.3:+5993566 MS.gene22948:CDS
AGGTACAAGGGTGTCATCTG+CGG 0.674141 7.3:-5993247 None:intergenic
GGTCAAATTAGAATTAGCCA+CGG 0.676833 7.3:-5993628 None:intergenic
GGATTGAATTGTCCATGTAG+GGG 0.678837 7.3:-5994667 None:intergenic
AGCAGTTGCAATGAGAAGTG+GGG 0.693351 7.3:+5994477 MS.gene22948:CDS
TGTCCATGTAGGGGAAGACG+AGG 0.702012 7.3:-5994658 None:intergenic
TTTAGATGGACTAATTACCG+TGG 0.710695 7.3:+5993611 MS.gene22948:CDS
ACAGATCAAGTGAAACACTG+TGG 0.771669 7.3:-5993695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAACAAGACATTA+TGG + chr7.3:5993739-5993758 MS.gene22948:CDS 20.0%
!! AAAAAAGAACAAGACATTAT+GGG + chr7.3:5993740-5993759 MS.gene22948:CDS 20.0%
!! TTCATGATATTTATCAAAGA+AGG + chr7.3:5994011-5994030 MS.gene22948:CDS 20.0%
! ACACTTCTAATAGAATTACA+TGG + chr7.3:5994959-5994978 MS.gene22948:CDS 25.0%
! ATATTGGGATGATTTACAAA+TGG - chr7.3:5993280-5993299 None:intergenic 25.0%
! CAAGTTAAACCTTACAAAAT+CGG + chr7.3:5994233-5994252 MS.gene22948:intron 25.0%
! TAGAAATGTGTTTATAAGTG+AGG - chr7.3:5994278-5994297 None:intergenic 25.0%
! TAGTAAAATTTCTCAAAGTG+AGG - chr7.3:5994369-5994388 None:intergenic 25.0%
! TATAAAGAATGCGACATTTA+TGG + chr7.3:5994577-5994596 MS.gene22948:CDS 25.0%
! TTGCAGTTAACATAACATTT+CGG + chr7.3:5994428-5994447 MS.gene22948:CDS 25.0%
! TTTAATAGTGCAATTGTGAA+TGG - chr7.3:5994740-5994759 None:intergenic 25.0%
! TTTCCAATCCATTGTTATAA+AGG - chr7.3:5993163-5993182 None:intergenic 25.0%
!! AACAGTAAAATTTGAAGCAT+CGG - chr7.3:5995010-5995029 None:intergenic 25.0%
!! AACTAGACATCTTACAATTT+TGG + chr7.3:5994203-5994222 MS.gene22948:intron 25.0%
!! ATGTTTTCTTACCAAATGTT+GGG - chr7.3:5994163-5994182 None:intergenic 25.0%
!! CAATGAGTTCAAAAACTTTT+GGG - chr7.3:5993391-5993410 None:intergenic 25.0%
!! GCTAATAAGATCATTTTCTA+TGG - chr7.3:5993652-5993671 None:intergenic 25.0%
!! TATGTTTTCTTACCAAATGT+TGG - chr7.3:5994164-5994183 None:intergenic 25.0%
!! TCAATGAGTTCAAAAACTTT+TGG - chr7.3:5993392-5993411 None:intergenic 25.0%
!!! ATTTTTGAGTGCAACATAAT+TGG - chr7.3:5993511-5993530 None:intergenic 25.0%
AACACTATCAATGCAACAAA+TGG + chr7.3:5993984-5994003 MS.gene22948:CDS 30.0%
AACCATCAAACATGTTTAGA+TGG + chr7.3:5993597-5993616 MS.gene22948:CDS 30.0%
AATGTGTTTATAAGTGAGGA+CGG - chr7.3:5994274-5994293 None:intergenic 30.0%
ATCATCATCATCATCATCAT+GGG - chr7.3:5993868-5993887 None:intergenic 30.0%
GATGATTTACAAATGGTTTC+TGG - chr7.3:5993273-5993292 None:intergenic 30.0%
GGAACGATAGATTTCATATT+TGG + chr7.3:5994598-5994617 MS.gene22948:CDS 30.0%
GTTGTAAGTTTGCGAATATA+AGG - chr7.3:5995078-5995097 None:intergenic 30.0%
TGTCCTTTATAACAATGGAT+TGG + chr7.3:5993157-5993176 MS.gene22948:CDS 30.0%
TGTGCAATAAGATGGATATT+GGG - chr7.3:5993295-5993314 None:intergenic 30.0%
TTGTGCAATAAGATGGATAT+TGG - chr7.3:5993296-5993315 None:intergenic 30.0%
! ATCTAAACATGTTTGATGGT+TGG - chr7.3:5993598-5993617 None:intergenic 30.0%
! ATTGTTGTTGTTAGTCAAGA+TGG + chr7.3:5993912-5993931 MS.gene22948:CDS 30.0%
! CGATTTTGTAAGGTTTAACT+TGG - chr7.3:5994235-5994254 None:intergenic 30.0%
! TATGCAGAGTTTGATAATAG+AGG + chr7.3:5994925-5994944 MS.gene22948:CDS 30.0%
! TGTTTTCTTACCAAATGTTG+GGG - chr7.3:5994162-5994181 None:intergenic 30.0%
! TTGTTGTTGTTAGTCAAGAT+GGG + chr7.3:5993913-5993932 MS.gene22948:CDS 30.0%
!! AATGTGTATAGAGAGTATCT+TGG - chr7.3:5994543-5994562 None:intergenic 30.0%
!! ACTATATGTTTTTGTAGCTG+TGG + chr7.3:5994390-5994409 MS.gene22948:intron 30.0%
!! GGATTTTGATAAGTATTGTG+AGG - chr7.3:5993490-5993509 None:intergenic 30.0%
!! GTTGCATTGATAGTGTTATT+TGG - chr7.3:5993981-5994000 None:intergenic 30.0%
!!! ACTGTTGATAATTTTCTGCA+GGG + chr7.3:5995024-5995043 MS.gene22948:CDS 30.0%
!!! GACATCTTACAATTTTGGTT+AGG + chr7.3:5994208-5994227 MS.gene22948:intron 30.0%
!!! TACTGTTGATAATTTTCTGC+AGG + chr7.3:5995023-5995042 MS.gene22948:CDS 30.0%
!!! TGTTGTTATGCAGTCTTTTT+TGG + chr7.3:5994837-5994856 MS.gene22948:CDS 30.0%
AAGACATTATGGGATTCTAC+AGG + chr7.3:5993750-5993769 MS.gene22948:CDS 35.0%
ACTTTCAATTCCCCAACATT+TGG + chr7.3:5994149-5994168 MS.gene22948:CDS 35.0%
AGACATTATGGGATTCTACA+GGG + chr7.3:5993751-5993770 MS.gene22948:CDS 35.0%
AGTAGAGTTGTGCAATAAGA+TGG - chr7.3:5993303-5993322 None:intergenic 35.0%
ATATAAGGAACTCCCATTTG+AGG - chr7.3:5995063-5995082 None:intergenic 35.0%
ATGTTAACTGCAACAAATCC+TGG - chr7.3:5994421-5994440 None:intergenic 35.0%
ATTTACCATTCATCAAGAGG+CGG + chr7.3:5993834-5993853 MS.gene22948:CDS 35.0%
CATCATCATCATCATCATCA+TGG - chr7.3:5993869-5993888 None:intergenic 35.0%
CTAATAGAATTACATGGCCA+GGG + chr7.3:5994965-5994984 MS.gene22948:CDS 35.0%
CTAGAAATGCAAAGAATGGA+AGG - chr7.3:5993224-5993243 None:intergenic 35.0%
GAATGTAGTAGCAATAGAGA+AGG - chr7.3:5993187-5993206 None:intergenic 35.0%
GGTCAAATTAGAATTAGCCA+CGG - chr7.3:5993631-5993650 None:intergenic 35.0%
GGTTTGAGTATCATCAACTT+GGG - chr7.3:5993556-5993575 None:intergenic 35.0%
GTAGCTAGAAATGCAAAGAA+TGG - chr7.3:5993228-5993247 None:intergenic 35.0%
GTCATTTACCATTCATCAAG+AGG + chr7.3:5993831-5993850 MS.gene22948:CDS 35.0%
GTCCATCTAAACATGTTTGA+TGG - chr7.3:5993602-5993621 None:intergenic 35.0%
GTTCTTGAATACTCTTTCCA+TGG - chr7.3:5994817-5994836 None:intergenic 35.0%
TACCGATCCAAATCAAAACA+CGG + chr7.3:5994708-5994727 MS.gene22948:CDS 35.0%
TCACTTGATCTGTTCACAAA+GGG + chr7.3:5993705-5993724 MS.gene22948:CDS 35.0%
TCTAATAGAATTACATGGCC+AGG + chr7.3:5994964-5994983 MS.gene22948:CDS 35.0%
TGATGAATGGTAAATGACTC+TGG - chr7.3:5993829-5993848 None:intergenic 35.0%
TTCACTTGATCTGTTCACAA+AGG + chr7.3:5993704-5993723 MS.gene22948:CDS 35.0%
! GATGATGATGATGATGAAAG+TGG + chr7.3:5993873-5993892 MS.gene22948:CDS 35.0%
! GATTTACAAATGGTTTCTGG+AGG - chr7.3:5993270-5993289 None:intergenic 35.0%
! GGATTTTTGAATTGAGAACC+TGG - chr7.3:5993358-5993377 None:intergenic 35.0%
! GTTCGATTTGACATCTTCAT+AGG - chr7.3:5993807-5993826 None:intergenic 35.0%
!! GTTTGCTATCATTAGAGAGT+TGG - chr7.3:5993674-5993693 None:intergenic 35.0%
!! TGATGATGAAAGTGGTGTTT+TGG + chr7.3:5993881-5993900 MS.gene22948:CDS 35.0%
!! TGGACTTTGGCATTTTGTTT+TGG - chr7.3:5993327-5993346 None:intergenic 35.0%
!! TTCTACTAGCCGATTTTGTA+AGG - chr7.3:5994245-5994264 None:intergenic 35.0%
!! TTTAGATGGACTAATTACCG+TGG + chr7.3:5993611-5993630 MS.gene22948:CDS 35.0%
!!! AAACTTTTGGGACTGAAACA+TGG - chr7.3:5993379-5993398 None:intergenic 35.0%
!!! ATGAAAGTGGTGTTTTGGTT+AGG + chr7.3:5993886-5993905 MS.gene22948:CDS 35.0%
!!! CTGTTGATAATTTTCTGCAG+GGG + chr7.3:5995025-5995044 MS.gene22948:CDS 35.0%
!!! TGAAAGTGGTGTTTTGGTTA+GGG + chr7.3:5993887-5993906 MS.gene22948:CDS 35.0%
AAAGCTGCAACGATAGAAAC+TGG - chr7.3:5994512-5994531 None:intergenic 40.0%
AAGCAGTTGCAATGAGAAGT+GGG + chr7.3:5994476-5994495 MS.gene22948:CDS 40.0%
AATGTCTGGTTGCCTCAAAT+GGG + chr7.3:5995048-5995067 MS.gene22948:CDS 40.0%
ACAGATCAAGTGAAACACTG+TGG - chr7.3:5993698-5993717 None:intergenic 40.0%
ACCGATCCAAATCAAAACAC+GGG + chr7.3:5994709-5994728 MS.gene22948:CDS 40.0%
ATCAACCGAACAGTTATCAC+CGG + chr7.3:5994098-5994117 MS.gene22948:CDS 40.0%
ATTTGATTGACCAAGCTGGT+TGG + chr7.3:5994863-5994882 MS.gene22948:CDS 40.0%
CATCGGTAGCATTAATCACA+TGG - chr7.3:5994993-5995012 None:intergenic 40.0%
GAAGATTTATCTCCAGGTGT+TGG + chr7.3:5994766-5994785 MS.gene22948:CDS 40.0%
GACAATTTGATTGACCAAGC+TGG + chr7.3:5994859-5994878 MS.gene22948:CDS 40.0%
GGATTGAATTGTCCATGTAG+GGG - chr7.3:5994670-5994689 None:intergenic 40.0%
GGGATTGAATTGTCCATGTA+GGG - chr7.3:5994671-5994690 None:intergenic 40.0%
GGGTTTGAGTATCATCAACT+TGG - chr7.3:5993557-5993576 None:intergenic 40.0%
GGTTATAACCGCACTTAGAA+GGG - chr7.3:5993577-5993596 None:intergenic 40.0%
GTACGGTGAAAACTTACCTT+GGG + chr7.3:5994788-5994807 MS.gene22948:CDS 40.0%
TACTCAAACCCTTCTAAGTG+CGG + chr7.3:5993566-5993585 MS.gene22948:CDS 40.0%
TGATCTGTTCACAAAGGGTT+GGG + chr7.3:5993710-5993729 MS.gene22948:CDS 40.0%
TGCAAAATCACCACTCCAAA+TGG - chr7.3:5994890-5994909 None:intergenic 40.0%
TGGGATTGAATTGTCCATGT+AGG - chr7.3:5994672-5994691 None:intergenic 40.0%
TGGTTATAACCGCACTTAGA+AGG - chr7.3:5993578-5993597 None:intergenic 40.0%
TGTCTCTATCCCTCAAAACA+AGG + chr7.3:5994049-5994068 MS.gene22948:CDS 40.0%
TTGAGTATCATCAACTTGGG+AGG - chr7.3:5993553-5993572 None:intergenic 40.0%
TTGATCTGTTCACAAAGGGT+TGG + chr7.3:5993709-5993728 MS.gene22948:CDS 40.0%
TTGCATCCTGGTTTCAGAAA+CGG + chr7.3:5993774-5993793 MS.gene22948:CDS 40.0%
! AAATGGTTTCTGGAGGTACA+AGG - chr7.3:5993263-5993282 None:intergenic 40.0%
! AAGGCGTATCTGATGATGAT+CGG + chr7.3:5994068-5994087 MS.gene22948:CDS 40.0%
! AATGGTTTCTGGAGGTACAA+GGG - chr7.3:5993262-5993281 None:intergenic 40.0%
! GAGTTTGATAATAGAGGACC+TGG + chr7.3:5994931-5994950 MS.gene22948:CDS 40.0%
! GCAGTTTTGCAAAACAACTG+CGG - chr7.3:5994629-5994648 None:intergenic 40.0%
! TATCTGATGATGATCGGAGA+CGG + chr7.3:5994074-5994093 MS.gene22948:CDS 40.0%
! TTCTATCGTTGCAGCTTTGA+AGG + chr7.3:5994514-5994533 MS.gene22948:CDS 40.0%
!! AATCTACCGTTTCTGAAACC+AGG - chr7.3:5993783-5993802 None:intergenic 40.0%
!! TCTATCGTTGCAGCTTTGAA+GGG + chr7.3:5994515-5994534 MS.gene22948:CDS 40.0%
!! TTTATCTCCAGGTGTTGGTA+CGG + chr7.3:5994771-5994790 MS.gene22948:CDS 40.0%
!!! ATCAGATACGCCTTGTTTTG+AGG - chr7.3:5994062-5994081 None:intergenic 40.0%
!!! GAAATGCCCGTGTTTTGATT+TGG - chr7.3:5994718-5994737 None:intergenic 40.0%
!!! TCAGATACGCCTTGTTTTGA+GGG - chr7.3:5994061-5994080 None:intergenic 40.0%
AGCAGTTGCAATGAGAAGTG+GGG + chr7.3:5994477-5994496 MS.gene22948:CDS 45.0%
CAAGCAGTTGCAATGAGAAG+TGG + chr7.3:5994475-5994494 MS.gene22948:CDS 45.0%
CACTTCTCATTGCAACTGCT+TGG - chr7.3:5994477-5994496 None:intergenic 45.0%
CCAGCTGAAGATTTATCTCC+AGG + chr7.3:5994760-5994779 MS.gene22948:CDS 45.0%
CCTGGAGATAAATCTTCAGC+TGG - chr7.3:5994763-5994782 None:intergenic 45.0%
GAATGTCTGGTTGCCTCAAA+TGG + chr7.3:5995047-5995066 MS.gene22948:CDS 45.0%
GATTGCCGGTGATAACTGTT+CGG - chr7.3:5994106-5994125 None:intergenic 45.0%
GCATTAATCACATGGTACCC+TGG - chr7.3:5994985-5995004 None:intergenic 45.0%
GGTACGGTGAAAACTTACCT+TGG + chr7.3:5994787-5994806 MS.gene22948:CDS 45.0%
GTTGTTAGTCAAGATGGGAG+TGG + chr7.3:5993918-5993937 MS.gene22948:CDS 45.0%
TAACATTTCGGAACACAGCC+AGG + chr7.3:5994440-5994459 MS.gene22948:CDS 45.0%
TCAATCCCATCACTGCTCAA+GGG + chr7.3:5994683-5994702 MS.gene22948:CDS 45.0%
TTCAATCCCATCACTGCTCA+AGG + chr7.3:5994682-5994701 MS.gene22948:CDS 45.0%
TTGAGAACCTGGCAAAGTCA+TGG - chr7.3:5993347-5993366 None:intergenic 45.0%
! ATTTTCTGCAGGGGAATGTC+TGG + chr7.3:5995034-5995053 MS.gene22948:CDS 45.0%
! GCAACTGCTTGGAATTTGCT+TGG - chr7.3:5994466-5994485 None:intergenic 45.0%
!! CTATTAGAAGTGTCTGCACC+AGG - chr7.3:5994952-5994971 None:intergenic 45.0%
!!! GCCCGTGTTTTGATTTGGAT+CGG - chr7.3:5994713-5994732 None:intergenic 45.0%
AAACTTACCTTGGGAGGCCA+TGG + chr7.3:5994797-5994816 MS.gene22948:CDS 50.0%
CCAAAGTCCATGACTTTGCC+AGG + chr7.3:5993337-5993356 MS.gene22948:CDS 50.0%
CCTGGCAAAGTCATGGACTT+TGG - chr7.3:5993340-5993359 None:intergenic 50.0%
CGGTGAAAACTTACCTTGGG+AGG + chr7.3:5994791-5994810 MS.gene22948:CDS 50.0%
GATTCTACAGGGTTGCATCC+TGG + chr7.3:5993762-5993781 MS.gene22948:CDS 50.0%
TACCATTCATCAAGAGGCGG+AGG + chr7.3:5993837-5993856 MS.gene22948:CDS 50.0%
TATCCTCGTCTTCCCCTACA+TGG + chr7.3:5994655-5994674 MS.gene22948:CDS 50.0%
TCCAAATGGACCAACCAGCT+TGG - chr7.3:5994876-5994895 None:intergenic 50.0%
TTTGTAGCTGTGGTAGCACC+AGG + chr7.3:5994400-5994419 MS.gene22948:intron 50.0%
! ACCAAGCTGGTTGGTCCATT+TGG + chr7.3:5994872-5994891 MS.gene22948:CDS 50.0%
! GTTTTCACCGTACCAACACC+TGG - chr7.3:5994781-5994800 None:intergenic 50.0%
! TGCTTGGAATTTGCTTGGCC+TGG - chr7.3:5994461-5994480 None:intergenic 50.0%
!! AGGTACAAGGGTGTCATCTG+CGG - chr7.3:5993250-5993269 None:intergenic 50.0%
ACTCTTTCCATGGCCTCCCA+AGG - chr7.3:5994807-5994826 None:intergenic 55.0%
ATCACCAACGCTGCGATTGC+CGG - chr7.3:5994120-5994139 None:intergenic 55.0%
CTCCTCCGCCTCTTGATGAA+TGG - chr7.3:5993842-5993861 None:intergenic 55.0%
GTACGCCCTTGAGCAGTGAT+GGG - chr7.3:5994691-5994710 None:intergenic 55.0%
TGTCCATGTAGGGGAAGACG+AGG - chr7.3:5994661-5994680 None:intergenic 55.0%
! GCTGGTTGGTCCATTTGGAG+TGG + chr7.3:5994877-5994896 MS.gene22948:CDS 55.0%
!! ATCGCAGCGTTGGTGATGGA+TGG + chr7.3:5994123-5994142 MS.gene22948:CDS 55.0%
ATCACCGGCAATCGCAGCGT+TGG + chr7.3:5994113-5994132 MS.gene22948:CDS 60.0%
GGTACGCCCTTGAGCAGTGA+TGG - chr7.3:5994692-5994711 None:intergenic 60.0%
!! GGCAATCGCAGCGTTGGTGA+TGG + chr7.3:5994119-5994138 MS.gene22948:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 5993156 5995107 5993156 ID=MS.gene22948
chr7.3 mRNA 5993156 5995107 5993156 ID=MS.gene22948.t1;Parent=MS.gene22948
chr7.3 exon 5993156 5994170 5993156 ID=MS.gene22948.t1.exon1;Parent=MS.gene22948.t1
chr7.3 CDS 5993156 5994170 5993156 ID=cds.MS.gene22948.t1;Parent=MS.gene22948.t1
chr7.3 exon 5994407 5995107 5994407 ID=MS.gene22948.t1.exon2;Parent=MS.gene22948.t1
chr7.3 CDS 5994407 5995107 5994407 ID=cds.MS.gene22948.t1;Parent=MS.gene22948.t1
Gene Sequence

>MS.gene22948

ATGTCCTTTATAACAATGGATTGGAAAGCCTTCTCTATTGCTACTACATTCTCAATTTTCTTTCTCCTTCCATTCTTTGCATTTCTAGCTACCGCAGATGACACCCTTGTACCTCCAGAAACCATTTGTAAATCATCCCAATATCCATCTTATTGCACAACTCTACTTCCAAAACAAAATGCCAAAGTCCATGACTTTGCCAGGTTCTCAATTCAAAAATCCATGTTTCAGTCCCAAAAGTTTTTGAACTCATTGAACTTCTATCTTGAGTCTACTTTGAGCAAAGAGACAATAAATGCACTCAAAGATTGTTTATTTCTCTCTCAACTCACCTCACAATACTTATCAAAATCCAATTATGTTGCACTCAAAAATACTAATGAAACTCTCTACACCTCCCAAGTTGATGATACTCAAACCCTTCTAAGTGCGGTTATAACCAACCATCAAACATGTTTAGATGGACTAATTACCGTGGCTAATTCTAATTTGACCATAGAAAATGATCTTATTAGCCAACTCTCTAATGATAGCAAACTCCACAGTGTTTCACTTGATCTGTTCACAAAGGGTTGGGTGCATGAAAAAAAGAACAAGACATTATGGGATTCTACAGGGTTGCATCCTGGTTTCAGAAACGGTAGATTGCCTATGAAGATGTCAAATCGAACCAGAGTCATTTACCATTCATCAAGAGGCGGAGGAGAAACCCATGATGATGATGATGATGATGAAAGTGGTGTTTTGGTTAGGGACATTGTTGTTGTTAGTCAAGATGGGAGTGGAAACTTTACAACTATCAATGATGCTGTTGCTGCTGCTCCAAATAACACTATCAATGCAACAAATGGATATTTCATGATATTTATCAAAGAAGGCGTTTATGAAGAATATGTCTCTATCCCTCAAAACAAGGCGTATCTGATGATGATCGGAGACGGAATCAACCGAACAGTTATCACCGGCAATCGCAGCGTTGGTGATGGATGGACAACTTTCAATTCCCCAACATTTGGTAAGAAAACATAATTTTTGTTCTTTTTCAGAAACTAGACATCTTACAATTTTGGTTAGGACCAAGTTAAACCTTACAAAATCGGCTAGTAGAATGAAGACCGTCCTCACTTATAAACACATTTCTAGACTATATCTCATCAAATGTGAGACTTTTAACACAAAGTTTACTTTTAACTAGCAATATAATTGTTTTCCTCACTTTGAGAAATTTTACTATACTATATGTTTTTGTAGCTGTGGTAGCACCAGGATTTGTTGCAGTTAACATAACATTTCGGAACACAGCCAGGCCAAGCAAATTCCAAGCAGTTGCAATGAGAAGTGGGGCAGATATGTCCAGTTTCTATCGTTGCAGCTTTGAAGGGTACCAAGATACTCTCTATACACATTCACTAAGACAATTTTATAAAGAATGCGACATTTATGGAACGATAGATTTCATATTTGGAAACGCCGCAGTTGTTTTGCAAAACTGCAACATATATCCTCGTCTTCCCCTACATGGACAATTCAATCCCATCACTGCTCAAGGGCGTACCGATCCAAATCAAAACACGGGCATTTCCATTCACAATTGCACTATTAAACCAGCTGAAGATTTATCTCCAGGTGTTGGTACGGTGAAAACTTACCTTGGGAGGCCATGGAAAGAGTATTCAAGAACTGTTGTTATGCAGTCTTTTTTGGACAATTTGATTGACCAAGCTGGTTGGTCCATTTGGAGTGGTGATTTTGCACTCTCTACGTTGTATTATGCAGAGTTTGATAATAGAGGACCTGGTGCAGACACTTCTAATAGAATTACATGGCCAGGGTACCATGTGATTAATGCTACCGATGCTTCAAATTTTACTGTTGATAATTTTCTGCAGGGGAATGTCTGGTTGCCTCAAATGGGAGTTCCTTATATTCGCAAACTTACAACTTTTAATTAG
Protein sequence

>MS.gene22948.t1

MSFITMDWKAFSIATTFSIFFLLPFFAFLATADDTLVPPETICKSSQYPSYCTTLLPKQNAKVHDFARFSIQKSMFQSQKFLNSLNFYLESTLSKETINALKDCLFLSQLTSQYLSKSNYVALKNTNETLYTSQVDDTQTLLSAVITNHQTCLDGLITVANSNLTIENDLISQLSNDSKLHSVSLDLFTKGWVHEKKNKTLWDSTGLHPGFRNGRLPMKMSNRTRVIYHSSRGGGETHDDDDDDESGVLVRDIVVVSQDGSGNFTTINDAVAAAPNNTINATNGYFMIFIKEGVYEEYVSIPQNKAYLMMIGDGINRTVITGNRSVGDGWTTFNSPTFAVVAPGFVAVNITFRNTARPSKFQAVAMRSGADMSSFYRCSFEGYQDTLYTHSLRQFYKECDIYGTIDFIFGNAAVVLQNCNIYPRLPLHGQFNPITAQGRTDPNQNTGISIHNCTIKPAEDLSPGVGTVKTYLGRPWKEYSRTVVMQSFLDNLIDQAGWSIWSGDFALSTLYYAEFDNRGPGADTSNRITWPGYHVINATDASNFTVDNFLQGNVWLPQMGVPYIRKLTTFN