AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048016

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048016.t1 MTR_1g088020 97.325 486 13 0 1 486 71 556 0.0 986
MS.gene048016.t1 MTR_1g088225 96.296 486 16 1 1 486 71 554 0.0 969
MS.gene048016.t1 MTR_1g054880 90.123 486 46 1 1 486 76 559 0.0 896
MS.gene048016.t1 MTR_7g108890 75.565 487 116 2 1 486 79 563 0.0 773
MS.gene048016.t1 MTR_0458s0010 81.070 486 55 4 1 486 71 519 0.0 754
MS.gene048016.t1 MTR_7g108875 67.423 485 153 3 4 486 84 565 0.0 682
MS.gene048016.t1 MTR_7g108900 67.149 484 152 5 1 481 77 556 0.0 669
MS.gene048016.t1 MTR_0458s0030 98.491 265 4 0 222 486 51 315 0.0 552
MS.gene048016.t1 MTR_1g088040 98.491 265 4 0 222 486 51 315 0.0 552
MS.gene048016.t1 MTR_1g083520 53.830 483 191 7 6 485 75 528 7.92e-177 507
MS.gene048016.t1 MTR_8g042910 49.590 488 233 5 7 485 129 612 8.35e-165 479
MS.gene048016.t1 MTR_3g010770 49.290 493 233 6 6 486 89 576 1.78e-164 477
MS.gene048016.t1 MTR_7g108905 51.042 480 204 9 7 481 99 552 4.16e-155 452
MS.gene048016.t1 MTR_4g025690 48.428 477 196 12 11 485 85 513 5.88e-138 407
MS.gene048016.t1 MTR_4g025730 49.036 467 184 13 21 485 95 509 6.71e-135 399
MS.gene048016.t1 MTR_8g023310 46.640 491 215 9 13 485 128 589 2.03e-133 398
MS.gene048016.t1 MTR_4g124520 46.404 431 197 6 57 485 123 521 1.05e-132 394
MS.gene048016.t1 MTR_2g044880 45.142 494 218 12 3 485 74 525 1.50e-132 394
MS.gene048016.t1 MTR_4g087980 45.763 472 214 9 18 485 83 516 3.87e-131 390
MS.gene048016.t1 MTR_2g044810 43.908 476 230 7 10 485 96 534 1.06e-130 389
MS.gene048016.t1 MTR_7g112580 44.093 474 219 9 21 485 106 542 2.76e-130 389
MS.gene048016.t1 MTR_8g104645 55.422 332 144 3 155 485 44 372 2.80e-130 382
MS.gene048016.t1 MTR_1g008140 44.699 481 230 8 21 485 147 607 3.47e-130 390
MS.gene048016.t1 MTR_8g104655 46.581 468 221 8 21 485 100 541 5.31e-130 388
MS.gene048016.t1 MTR_8g042900 45.148 474 226 11 14 485 140 581 8.48e-128 384
MS.gene048016.t1 MTR_3g010780 44.444 468 230 11 18 485 137 574 1.67e-127 382
MS.gene048016.t1 MTR_4g025670 44.235 477 218 8 13 485 57 489 2.72e-127 379
MS.gene048016.t1 MTR_4g087970 44.017 468 226 9 21 485 83 517 2.80e-127 380
MS.gene048016.t1 MTR_7g050870 44.397 473 216 10 21 485 121 554 1.03e-125 377
MS.gene048016.t1 MTR_7g050980 44.421 475 213 11 21 485 122 555 1.82e-125 377
MS.gene048016.t1 MTR_3g091380 44.538 476 231 8 21 485 144 597 6.22e-125 377
MS.gene048016.t1 MTR_7g050950 42.585 472 225 9 21 485 121 553 1.56e-121 367
MS.gene048016.t1 MTR_4g035980 41.988 493 240 10 1 485 85 539 5.50e-120 362
MS.gene048016.t1 MTR_3g008640 43.162 468 218 9 24 485 102 527 4.17e-116 352
MS.gene048016.t1 MTR_3g008720 42.308 468 222 10 24 485 102 527 6.15e-116 351
MS.gene048016.t1 MTR_4g124550 40.851 470 251 7 21 485 146 593 1.29e-115 353
MS.gene048016.t1 MTR_3g033690 42.797 472 214 10 24 485 101 526 1.37e-115 350
MS.gene048016.t1 MTR_3g008700 51.652 333 152 4 155 485 202 527 1.29e-114 348
MS.gene048016.t1 MTR_7g053360 51.351 333 153 4 155 485 202 527 2.11e-114 347
MS.gene048016.t1 MTR_1g086210 37.838 481 264 7 21 485 108 569 1.43e-106 328
MS.gene048016.t1 MTR_8g023150 40.381 473 246 10 20 485 139 582 2.72e-106 328
MS.gene048016.t1 MTR_2g044810 57.540 252 107 0 234 485 214 465 4.99e-106 324
MS.gene048016.t1 MTR_1g083510 38.413 479 264 12 21 484 120 582 1.40e-100 313
MS.gene048016.t1 MTR_0618s0020 60.088 228 90 1 259 485 1 228 6.97e-100 300
MS.gene048016.t1 MTR_8g104580 40.598 468 216 11 21 485 92 500 1.27e-99 308
MS.gene048016.t1 MTR_1g086190 37.924 472 276 7 16 485 107 563 7.48e-99 308
MS.gene048016.t1 MTR_7g112590 37.006 481 275 9 16 484 118 582 1.75e-98 308
MS.gene048016.t1 MTR_2g044660 49.521 313 151 3 173 485 327 632 1.13e-96 305
MS.gene048016.t1 MTR_1g083470 36.538 468 265 8 21 481 124 566 1.41e-95 300
MS.gene048016.t1 MTR_1g083500 36.538 468 265 8 21 481 124 566 1.41e-95 300
MS.gene048016.t1 MTR_8g093460 47.799 318 150 6 168 474 228 540 4.02e-94 296
MS.gene048016.t1 MTR_1g083490 36.052 466 270 8 21 481 129 571 1.17e-92 293
MS.gene048016.t1 MTR_4g005170 36.052 466 270 8 21 481 129 571 1.19e-92 294
MS.gene048016.t1 MTR_7g110560 36.000 475 265 11 21 486 106 550 6.53e-92 290
MS.gene048016.t1 MTR_4g005180 35.684 468 269 8 21 481 111 553 2.03e-91 289
MS.gene048016.t1 MTR_7g110490 36.897 477 275 8 18 480 105 569 7.09e-91 288
MS.gene048016.t1 MTR_7g110510 36.897 477 275 8 18 480 105 569 7.09e-91 288
MS.gene048016.t1 MTR_7g110440 35.908 479 281 8 21 485 108 574 1.52e-89 285
MS.gene048016.t1 MTR_3g095920 36.326 479 252 11 28 484 116 563 1.94e-89 284
MS.gene048016.t1 MTR_4g120280 37.387 444 237 11 55 484 155 571 4.99e-89 283
MS.gene048016.t1 MTR_4g120290 36.569 443 242 10 55 484 155 571 1.92e-86 277
MS.gene048016.t1 MTR_2g436040 35.880 432 240 8 57 482 143 543 1.72e-84 273
MS.gene048016.t1 MTR_5g083620 41.009 317 175 5 174 485 47 356 3.42e-80 254
MS.gene048016.t1 MTR_8g088610 40.483 331 183 6 155 482 54 373 2.25e-79 252
MS.gene048016.t1 MTR_2g436050 33.333 480 276 9 18 484 115 563 3.54e-75 247
MS.gene048016.t1 MTR_7g110420 33.401 491 289 10 21 485 108 586 6.49e-74 244
MS.gene048016.t1 MTR_7g107180 41.905 315 167 6 173 485 7 307 3.63e-73 234
MS.gene048016.t1 MTR_2g105560 39.365 315 173 6 173 485 41 339 1.63e-71 230
MS.gene048016.t1 MTR_7g110430 33.056 481 258 11 21 485 108 540 1.34e-70 234
MS.gene048016.t1 MTR_7g111560 30.898 479 275 11 20 485 121 556 1.83e-65 221
MS.gene048016.t1 MTR_1g086540 33.613 357 202 9 129 474 12 344 1.26e-52 181
MS.gene048016.t1 MTR_6g012800 34.954 329 180 10 172 483 5 316 5.46e-52 179
MS.gene048016.t1 MTR_6g024165 35.873 315 170 11 172 474 40 334 9.74e-51 176
MS.gene048016.t1 MTR_6g088810 35.410 305 169 7 181 474 90 377 1.01e-49 174
MS.gene048016.t1 MTR_7g011530 33.537 328 186 9 172 483 5 316 1.21e-48 170
MS.gene048016.t1 MTR_6g042660 34.323 303 163 8 151 448 25 296 2.10e-48 169
MS.gene048016.t1 MTR_8g102380 33.758 314 178 7 174 474 81 377 2.90e-48 171
MS.gene048016.t1 MTR_7g092780 33.654 312 183 6 173 474 90 387 7.44e-47 167
MS.gene048016.t1 MTR_2g039530 39.159 309 147 11 155 452 40 318 1.59e-46 165
MS.gene048016.t1 MTR_4g124740 32.268 313 176 9 172 474 53 339 6.74e-43 155
MS.gene048016.t1 MTR_1g033050 33.333 315 177 7 172 478 17 306 7.64e-43 154
MS.gene048016.t1 MTR_2g033970 32.051 312 183 7 173 475 56 347 3.47e-42 154
MS.gene048016.t1 MTR_7g102600 30.029 343 210 7 139 474 74 393 6.34e-42 154
MS.gene048016.t1 MTR_8g102380 35.135 259 140 6 174 419 81 324 6.05e-41 150
MS.gene048016.t1 MTR_5g095490 32.468 308 179 7 179 474 67 357 2.01e-40 149
MS.gene048016.t1 MTR_5g012600 31.132 318 190 7 172 477 62 362 2.17e-40 149
MS.gene048016.t1 MTR_5g083590 29.430 316 168 6 173 486 7 269 2.64e-40 146
MS.gene048016.t1 MTR_6g042690 32.808 317 171 11 173 474 39 328 4.18e-40 147
MS.gene048016.t1 MTR_5g093970 33.546 313 179 8 169 474 39 329 3.10e-39 145
MS.gene048016.t1 MTR_2g436600 30.990 313 176 10 173 475 55 337 1.94e-37 140
MS.gene048016.t1 MTR_5g088300 32.680 306 184 7 169 474 33 316 3.32e-37 139
MS.gene048016.t1 MTR_4g051810 31.068 309 192 6 168 476 32 319 7.50e-35 133
MS.gene048016.t1 MTR_5g088290 30.619 307 190 7 169 474 44 328 5.20e-34 131
MS.gene048016.t1 MTR_5g088280 30.619 307 189 7 169 474 35 318 2.90e-31 123
MS.gene048016.t1 MTR_8g036225 30.721 319 177 10 172 474 32 322 2.58e-30 120
MS.gene048016.t1 MTR_4g074290 29.032 310 199 7 170 474 68 361 6.44e-29 117
MS.gene048016.t1 MTR_2g073390 28.846 312 193 10 172 474 70 361 4.69e-27 112
MS.gene048016.t1 MTR_0009s0350 30.634 284 176 7 170 447 68 336 1.32e-26 111
MS.gene048016.t1 MTR_0009s0340 30.634 284 176 7 170 447 68 336 1.32e-26 111
MS.gene048016.t1 MTR_6g025590 36.170 188 101 7 153 330 33 211 1.03e-23 100
MS.gene048016.t1 MTR_0408s0030 35.878 131 70 4 345 474 31 148 7.54e-18 80.9
MS.gene048016.t1 MTR_7g102580 44.186 86 38 2 250 330 73 153 5.60e-15 72.8
MS.gene048016.t1 MTR_6g024200 29.651 172 100 4 304 474 125 276 7.97e-15 75.1
MS.gene048016.t1 MTR_4g130790 28.796 191 126 3 176 359 25 212 7.36e-14 72.0
MS.gene048016.t1 MTR_2g436070 26.619 278 152 10 18 273 115 362 7.44e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048016.t1 AT1G02810 61.961 510 168 8 1 486 71 578 0.0 630
MS.gene048016.t1 AT4G02330 63.374 486 163 6 14 486 89 572 0.0 627
MS.gene048016.t1 AT2G47550 62.525 491 170 8 1 486 78 559 0.0 620
MS.gene048016.t1 AT3G10720 51.143 481 223 7 13 486 141 616 3.36e-165 481
MS.gene048016.t1 AT5G04970 47.789 475 236 7 19 486 152 621 3.47e-149 440
MS.gene048016.t1 AT2G45220 47.109 467 194 10 21 485 96 511 1.23e-134 399
MS.gene048016.t1 AT2G26440 44.946 465 235 8 21 485 104 547 2.10e-134 399
MS.gene048016.t1 AT3G60730 47.005 434 216 9 56 485 96 519 8.87e-130 387
MS.gene048016.t1 AT3G43270 46.709 471 222 9 21 486 80 526 5.12e-129 385
MS.gene048016.t1 AT4G33220 45.051 495 242 10 1 485 49 523 6.66e-129 384
MS.gene048016.t1 AT3G05620 43.243 481 214 8 21 485 104 541 5.00e-127 380
MS.gene048016.t1 AT5G51490 44.350 469 223 7 22 485 101 536 1.74e-126 379
MS.gene048016.t1 AT3G10720 63.462 260 95 0 227 486 1 260 8.30e-126 367
MS.gene048016.t1 AT3G14310 45.868 484 226 9 21 485 126 592 9.23e-126 379
MS.gene048016.t1 AT1G53830 45.946 481 236 6 14 485 122 587 1.47e-125 378
MS.gene048016.t1 AT1G23200 43.393 507 230 12 1 485 83 554 4.83e-125 375
MS.gene048016.t1 AT1G11580 46.991 432 196 7 57 485 156 557 6.85e-125 375
MS.gene048016.t1 AT1G11580 46.991 432 196 7 57 485 177 578 1.41e-124 375
MS.gene048016.t1 AT4G33220 54.572 339 144 3 148 485 73 402 3.91e-124 368
MS.gene048016.t1 AT5G53370 46.065 432 211 9 57 485 173 585 2.05e-122 370
MS.gene048016.t1 AT5G53370 46.065 432 211 9 57 485 209 621 5.73e-122 370
MS.gene048016.t1 AT3G49220 45.662 438 212 9 53 485 180 596 7.87e-122 369
MS.gene048016.t1 AT3G49220 45.662 438 212 9 53 485 225 641 2.33e-121 369
MS.gene048016.t1 AT4G02300 43.469 467 235 8 21 485 93 532 4.43e-121 365
MS.gene048016.t1 AT5G04960 41.300 477 247 9 8 483 118 562 5.39e-120 363
MS.gene048016.t1 AT5G51500 45.727 433 201 9 57 485 138 540 1.32e-117 356
MS.gene048016.t1 AT3G10710 43.601 461 225 11 25 485 136 561 4.27e-116 353
MS.gene048016.t1 AT4G02320 41.545 479 249 9 11 485 67 518 1.13e-115 350
MS.gene048016.t1 AT2G26450 41.139 474 234 11 21 485 174 611 2.71e-115 352
MS.gene048016.t1 AT3G05610 39.286 476 254 8 18 486 119 566 1.21e-113 350
MS.gene048016.t1 AT1G53840 41.064 470 240 11 21 479 138 581 1.31e-112 345
MS.gene048016.t1 AT4G00190 42.184 467 214 11 20 485 63 474 3.49e-112 340
MS.gene048016.t1 AT2G43050 40.795 478 220 8 18 486 94 517 7.86e-111 338
MS.gene048016.t1 AT3G59010 43.981 432 209 7 56 486 130 529 1.16e-109 335
MS.gene048016.t1 AT4G33230 39.451 474 251 10 21 485 160 606 5.87e-107 331
MS.gene048016.t1 AT5G27870 38.495 465 263 7 21 485 121 562 1.64e-105 330
MS.gene048016.t1 AT5G49180 42.191 429 227 6 56 481 156 566 1.86e-104 323
MS.gene048016.t1 AT3G47400 40.812 468 247 6 21 485 154 594 3.31e-103 321
MS.gene048016.t1 AT3G14300 40.638 470 241 10 21 480 525 966 1.92e-99 320
MS.gene048016.t1 AT3G06830 39.535 430 245 6 56 483 150 566 5.39e-99 309
MS.gene048016.t1 AT4G03930 41.995 431 217 9 56 485 126 524 6.60e-99 307
MS.gene048016.t1 AT3G27980 40.930 430 213 8 59 485 106 497 1.39e-97 303
MS.gene048016.t1 AT5G20860 36.473 499 246 11 12 485 86 538 1.09e-96 302
MS.gene048016.t1 AT1G11590 41.299 431 220 10 56 485 126 524 4.15e-96 300
MS.gene048016.t1 AT5G09760 46.835 316 143 8 173 473 241 546 3.96e-86 275
MS.gene048016.t1 AT5G09760 47.115 312 148 7 173 473 267 572 7.86e-86 275
MS.gene048016.t1 AT1G11370 52.869 244 112 1 173 416 46 286 7.31e-85 263
MS.gene048016.t1 AT4G15980 43.675 332 181 3 153 483 374 700 9.20e-84 273
MS.gene048016.t1 AT4G15980 43.675 332 181 3 153 483 384 710 1.04e-83 273
MS.gene048016.t1 AT5G64640 36.152 473 250 11 28 478 160 602 1.78e-82 267
MS.gene048016.t1 AT5G20860 33.539 486 224 10 12 472 86 497 1.39e-76 249
MS.gene048016.t1 AT2G47030 42.857 315 173 4 174 485 278 588 2.35e-74 245
MS.gene048016.t1 AT2G47040 32.816 515 291 11 11 485 96 595 8.11e-72 239
MS.gene048016.t1 AT3G62170 41.270 315 178 4 174 485 278 588 2.57e-70 234
MS.gene048016.t1 AT5G19730 35.669 314 174 7 172 474 85 381 4.29e-52 181
MS.gene048016.t1 AT3G29090 35.154 293 164 6 167 448 1 278 6.13e-49 171
MS.gene048016.t1 AT1G05310 35.577 312 177 6 173 474 91 388 3.95e-48 171
MS.gene048016.t1 AT2G21610 32.673 303 184 6 172 474 50 332 7.53e-48 169
MS.gene048016.t1 AT2G21610 32.673 303 184 6 172 474 55 337 7.98e-48 169
MS.gene048016.t1 AT2G36710 32.698 315 191 5 172 479 90 390 2.47e-47 169
MS.gene048016.t1 AT3G24130 34.783 322 175 8 173 480 34 334 3.96e-47 166
MS.gene048016.t1 AT5G18990 37.801 291 146 8 173 448 29 299 6.45e-47 166
MS.gene048016.t1 AT3G17060 31.410 312 185 7 173 475 46 337 2.60e-46 164
MS.gene048016.t1 AT2G36700 31.494 308 191 5 172 474 41 333 1.05e-45 162
MS.gene048016.t1 AT2G19150 30.031 323 196 8 169 481 37 339 6.90e-44 158
MS.gene048016.t1 AT5G07430 32.063 315 193 7 164 474 58 355 4.80e-41 150
MS.gene048016.t1 AT5G47500 30.794 315 189 7 172 474 60 357 5.64e-40 148
MS.gene048016.t1 AT5G55590 31.761 318 188 7 169 474 78 378 1.15e-38 145
MS.gene048016.t1 AT5G26810 31.928 332 196 8 155 474 20 333 1.18e-38 144
MS.gene048016.t1 AT2G47280 31.889 323 184 10 173 480 35 336 2.23e-38 143
MS.gene048016.t1 AT2G19150 32.061 262 150 7 169 420 37 280 7.04e-38 140
MS.gene048016.t1 AT5G55590 33.333 264 149 6 169 420 78 326 1.86e-36 137
MS.gene048016.t1 AT5G07420 30.293 307 193 7 172 474 66 355 3.76e-36 137
MS.gene048016.t1 AT1G44980 42.515 167 93 1 173 339 78 241 8.87e-35 130
MS.gene048016.t1 AT5G61680 31.068 309 189 9 172 474 68 358 7.26e-34 131
MS.gene048016.t1 AT1G69940 28.896 308 196 8 172 474 66 355 5.21e-33 129
MS.gene048016.t1 AT5G07410 28.896 308 196 8 172 474 66 355 1.01e-32 128
MS.gene048016.t1 AT3G49220 29.808 208 121 8 53 256 225 411 2.58e-15 78.2

Find 0 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATACTATTAACAAAAAA+TGG + 11219:10304-10323 MS.gene048016:intron 10.0%
!!! ATATTTTATATTGTGATTTA+TGG + 11219:10472-10491 MS.gene048016:intron 10.0%
!! TCAAATATACGTTTAAAAAT+CGG - 11219:10336-10355 MS.gene048016:intergenic 15.0%
!! AAAGTAAAATAAGAACATCA+TGG + 11219:9846-9865 MS.gene048016:CDS 20.0%
!! AAGCATTTGAATTTCAAAAA+TGG + 11219:9881-9900 MS.gene048016:CDS 20.0%
!! TTAAACGTATATTTGATGAA+TGG + 11219:10340-10359 MS.gene048016:intron 20.0%
!!! ATCAAGTACTTTTTGTTTTT+GGG - 11219:10166-10185 MS.gene048016:intergenic 20.0%
!!! GATGTTCTTATTTTACTTTT+AGG - 11219:9845-9864 MS.gene048016:intergenic 20.0%
! TGGTAAGCAAATTTAATACT+TGG + 11219:10273-10292 MS.gene048016:intron 25.0%
! TTAGCAATCATTGTAAAAGT+CGG - 11219:10401-10420 MS.gene048016:intergenic 25.0%
! TTCTTCATATTTATCACCAA+AGG + 11219:10115-10134 MS.gene048016:CDS 25.0%
!! AGTTTTTATGCAATCTTTCA+TGG + 11219:10989-11008 MS.gene048016:CDS 25.0%
!! CTTTTACAATGATTGCTAAA+AGG + 11219:10402-10421 MS.gene048016:intron 25.0%
!! GTTACAATTTTGCAAAACAA+CGG - 11219:10784-10803 MS.gene048016:intergenic 25.0%
!! TTAAATTTGCTTACCAAATG+TGG - 11219:10269-10288 MS.gene048016:intergenic 25.0%
!!! AAACAAAAAGTACTTGATGA+TGG + 11219:10168-10187 MS.gene048016:CDS 25.0%
!!! AGATTGATTTGTTGTTGTAT+AGG - 11219:9624-9643 MS.gene048016:intergenic 25.0%
!!! CATCAAGTACTTTTTGTTTT+TGG - 11219:10167-10186 MS.gene048016:intergenic 25.0%
ACTTTGTACTATGCAGAATA+CGG + 11219:11068-11087 MS.gene048016:CDS 30.0%
ATCAATCAAACAGTTATCAC+CGG + 11219:10202-10221 MS.gene048016:CDS 30.0%
ATTCAAAACTCAATTCAGCA+AGG - 11219:9589-9608 MS.gene048016:intergenic 30.0%
CATTGTATACACATTCTCTA+AGG + 11219:10700-10719 MS.gene048016:CDS 30.0%
TACTAATGAAGATAGTGTTG+TGG + 11219:9988-10007 MS.gene048016:CDS 30.0%
TATATCAATCCACTAGAGTA+TGG - 11219:11230-11249 MS.gene048016:intergenic 30.0%
TATCGAGAATGCGATATATA+CGG + 11219:10729-10748 MS.gene048016:CDS 30.0%
TATTAAAGCAGCAGATGATT+TGG + 11219:10905-10924 MS.gene048016:CDS 30.0%
TCAATAGACTCACAATTTCA+AGG + 11219:9512-9531 MS.gene048016:CDS 30.0%
TTCAAAGCTACAACTATAGA+AGG - 11219:10667-10686 MS.gene048016:intergenic 30.0%
! GTTGACTTCATATTTGGAAA+TGG + 11219:10756-10775 MS.gene048016:CDS 30.0%
! TGTTTGTTGGTTAGTCAAAA+CGG - 11219:9699-9718 MS.gene048016:intergenic 30.0%
!! AAAAAGTACTTGATGATGGT+TGG + 11219:10172-10191 MS.gene048016:CDS 30.0%
!! GCTTTATTTGACATCTTCAA+TGG - 11219:9914-9933 MS.gene048016:intergenic 30.0%
!! TCTATAGTTGTAGCTTTGAA+GGG + 11219:10667-10686 MS.gene048016:CDS 30.0%
!! TTCTATAGTTGTAGCTTTGA+AGG + 11219:10666-10685 MS.gene048016:CDS 30.0%
AAAGCTACAACTATAGAAGG+CGG - 11219:10664-10683 MS.gene048016:intergenic 35.0%
AACCAACAAACATGTTTGGA+AGG + 11219:9707-9726 MS.gene048016:CDS 35.0%
ACATTCAATTCAGCCACATT+TGG + 11219:10253-10272 MS.gene048016:CDS 35.0%
ACTGATCCAAATCAAAACAC+TGG + 11219:10861-10880 MS.gene048016:CDS 35.0%
ATAGACTCACAATTTCAAGG+AGG + 11219:9515-9534 MS.gene048016:CDS 35.0%
ATCATCACCACTCAAGAAAT+TGG - 11219:11186-11205 MS.gene048016:intergenic 35.0%
ATTGTCGTTGTTAGTCAAGA+TGG + 11219:10019-10038 MS.gene048016:CDS 35.0%
CTTTGTCTCAATCCACAATT+CGG + 11219:9543-9562 MS.gene048016:CDS 35.0%
GAATTGAATTGTCCACTTAG+CGG - 11219:10822-10841 MS.gene048016:intergenic 35.0%
GACTAACCAACAAACATGTT+TGG + 11219:9703-9722 MS.gene048016:CDS 35.0%
GTCCTTGAATATTCTTTCCA+CGG - 11219:10969-10988 MS.gene048016:intergenic 35.0%
GTTTGAACAGTTCCAACTTT+CGG - 11219:10933-10952 MS.gene048016:intergenic 35.0%
TGAAACCATCAACAACATTG+TGG - 11219:10231-10250 MS.gene048016:intergenic 35.0%
TGGCCAAGTTATCATGTTAT+CGG + 11219:11131-11150 MS.gene048016:CDS 35.0%
TTTGTCTCAATCCACAATTC+GGG + 11219:9544-9563 MS.gene048016:CDS 35.0%
! ATTTCTTGAGTGGTGATGAT+TGG + 11219:11186-11205 MS.gene048016:CDS 35.0%
! GGAACAGTTGACTTCATATT+TGG + 11219:10750-10769 MS.gene048016:CDS 35.0%
!!! GAAGTTCCAGTGTTTTGATT+TGG - 11219:10870-10889 MS.gene048016:intergenic 35.0%
!!! TTCAAATGCTTGCCATTTTG+TGG - 11219:9872-9891 MS.gene048016:intergenic 35.0%
AACCCAACCTTTCTTGAACA+AGG - 11219:9822-9841 MS.gene048016:intergenic 40.0%
AACCTTTCTTGAACAAGGCT+AGG - 11219:9817-9836 MS.gene048016:intergenic 40.0%
AAGTCTTCTGCTTGAGAAGT+TGG - 11219:9659-9678 MS.gene048016:intergenic 40.0%
AATAACACGGTTGCTAGTGA+TGG + 11219:10088-10107 MS.gene048016:CDS 40.0%
ACCTTTCTTGAACAAGGCTA+GGG - 11219:9816-9835 MS.gene048016:intergenic 40.0%
AGAACATCATGGCCACAAAA+TGG + 11219:9857-9876 MS.gene048016:CDS 40.0%
ATACTCTTGACACACACCTT+TGG - 11219:10134-10153 MS.gene048016:intergenic 40.0%
ATCAACAACATTGTGGTCTC+CGG - 11219:10224-10243 MS.gene048016:intergenic 40.0%
ATGATTCTGCTAGACGCAAT+GGG + 11219:9945-9964 MS.gene048016:CDS 40.0%
GAAATTGGACACCGTGAAAT+TGG - 11219:11171-11190 MS.gene048016:intergenic 40.0%
GACCGTGGAAAGAATATTCA+AGG + 11219:10964-10983 MS.gene048016:CDS 40.0%
GACCTTCCAAACATGTTTGT+TGG - 11219:9712-9731 MS.gene048016:intergenic 40.0%
GATGATTGGATTCCTCAAAC+TGG + 11219:11200-11219 MS.gene048016:CDS 40.0%
GGAACTGTTCAAACATACCT+AGG + 11219:10939-10958 MS.gene048016:CDS 40.0%
GTTGTTAGTCAAGATGGAAG+TGG + 11219:10025-10044 MS.gene048016:CDS 40.0%
TATGATTCTGCTAGACGCAA+TGG + 11219:9944-9963 MS.gene048016:CDS 40.0%
TTCAATTCCATCACTGCTCA+AGG + 11219:10834-10853 MS.gene048016:CDS 40.0%
! GCACCGATAACATGATAACT+TGG - 11219:11137-11156 MS.gene048016:intergenic 40.0%
! TCACTAGCAACCGTGTTATT+TGG - 11219:10088-10107 MS.gene048016:intergenic 40.0%
! TGTGAATTTTCAGCCGTAGT+TGG + 11219:10546-10565 MS.gene048016:intron 40.0%
!! AGCCTTGTTCAAGAAAGGTT+GGG + 11219:9817-9836 MS.gene048016:CDS 40.0%
!! TACTTGATGATGGTTGGAGA+GGG + 11219:10178-10197 MS.gene048016:CDS 40.0%
!! TAGCCTTGTTCAAGAAAGGT+TGG + 11219:9816-9835 MS.gene048016:CDS 40.0%
!! TTGTAGCTTTGAAGGGTATC+AGG + 11219:10674-10693 MS.gene048016:CDS 40.0%
AAACATACCTAGGAAGACCG+TGG + 11219:10949-10968 MS.gene048016:CDS 45.0%
ACGGTGTCCAATTTCTTGAG+TGG + 11219:11176-11195 MS.gene048016:CDS 45.0%
ACTGGTGTTCCATACTCTAG+TGG + 11219:11218-11237 MS.gene048016:CDS 45.0%
AGCTACTGCGTCATTGATAG+TGG - 11219:10059-10078 MS.gene048016:intergenic 45.0%
AGCTGCTGCACCAAATAACA+CGG + 11219:10075-10094 MS.gene048016:CDS 45.0%
ATAACATTTCGCAACACCGC+TGG + 11219:10591-10610 MS.gene048016:CDS 45.0%
ATCTTCAAGAGCCCGAATTG+TGG - 11219:9558-9577 MS.gene048016:intergenic 45.0%
ATTCTTTCCACGGTCTTCCT+AGG - 11219:10959-10978 MS.gene048016:intergenic 45.0%
CAAGCAGTTGCAATGAGAAG+TGG + 11219:10627-10646 MS.gene048016:CDS 45.0%
CACTTCTCATTGCAACTGCT+TGG - 11219:10629-10648 MS.gene048016:intergenic 45.0%
GACAGTTTCATAAACCCTGC+TGG + 11219:11011-11030 MS.gene048016:CDS 45.0%
GAGTATGGAACACCAGTTTG+AGG - 11219:11215-11234 MS.gene048016:intergenic 45.0%
GGAGACCACAATGTTGTTGA+TGG + 11219:10223-10242 MS.gene048016:CDS 45.0%
GTTTCATAAACCCTGCTGGT+TGG + 11219:11015-11034 MS.gene048016:CDS 45.0%
TACCGATGCAGCCAATTTCA+CGG + 11219:11157-11176 MS.gene048016:CDS 45.0%
TACGAACCCTTGACCAACTA+CGG - 11219:10562-10581 MS.gene048016:intergenic 45.0%
TAGCTTCTGATCAGAGAGTG+AGG + 11219:9741-9760 MS.gene048016:CDS 45.0%
TATGCAGAATACGGCAACAG+AGG + 11219:11077-11096 MS.gene048016:CDS 45.0%
TGAATTGTCCACTTAGCGGA+AGG - 11219:10818-10837 MS.gene048016:intergenic 45.0%
TTTCAGCCGTAGTTGGTCAA+GGG + 11219:10553-10572 MS.gene048016:intron 45.0%
! GATGATTTGGCTCCGAAAGT+TGG + 11219:10918-10937 MS.gene048016:CDS 45.0%
! TTTTCAGCCGTAGTTGGTCA+AGG + 11219:10552-10571 MS.gene048016:intron 45.0%
!! ACCCTAGCCTTGTTCAAGAA+AGG + 11219:9812-9831 MS.gene048016:CDS 45.0%
!! GTACTTGATGATGGTTGGAG+AGG + 11219:10177-10196 MS.gene048016:CDS 45.0%
AGAATACGGCAACAGAGGAG+CGG + 11219:11082-11101 MS.gene048016:CDS 50.0%
AGTTCGACCTTGAGCAGTGA+TGG - 11219:10844-10863 MS.gene048016:intergenic 50.0%
CACCGTGAAATTGGCTGCAT+CGG - 11219:11162-11181 MS.gene048016:intergenic 50.0%
GCTGGTTGGCATGAATGGAA+TGG + 11219:11029-11048 MS.gene048016:CDS 50.0%
TCCATTCATGCCAACCAGCA+GGG - 11219:11028-11047 MS.gene048016:intergenic 50.0%
TGGCCATGTCACTCGATTCA+CGG - 11219:11117-11136 MS.gene048016:intergenic 50.0%
TTCCATTCATGCCAACCAGC+AGG - 11219:11029-11048 MS.gene048016:intergenic 50.0%
! TTGGTGTTTGCTTGGTCCAG+CGG - 11219:10610-10629 MS.gene048016:intergenic 50.0%
!! GCAACTGCTTGGTGTTTGCT+TGG - 11219:10618-10637 MS.gene048016:intergenic 50.0%
GAATACGGCAACAGAGGAGC+GGG + 11219:11083-11102 MS.gene048016:CDS 55.0%
GCACCGTGAATCGAGTGACA+TGG + 11219:11111-11130 MS.gene048016:CDS 55.0%
TATCCTCGCCTTCCGCTAAG+TGG + 11219:10807-10826 MS.gene048016:CDS 55.0%
! ACCCTGCTGGTTGGCATGAA+TGG + 11219:11024-11043 MS.gene048016:CDS 55.0%
TGTCCACTTAGCGGAAGGCG+AGG - 11219:10813-10832 MS.gene048016:intergenic 60.0%


Chromosome Type Strat End Strand Name
11219 gene 9506 11250 9506 ID=MS.gene048016
11219 mRNA 9506 11250 9506 ID=MS.gene048016.t1;Parent=MS.gene048016
11219 exon 9506 10274 9506 ID=MS.gene048016.t1.exon1;Parent=MS.gene048016.t1
11219 CDS 9506 10274 9506 ID=cds.MS.gene048016.t1;Parent=MS.gene048016.t1
11219 exon 10559 11250 10559 ID=MS.gene048016.t1.exon2;Parent=MS.gene048016.t1
11219 CDS 10559 11250 10559 ID=cds.MS.gene048016.t1;Parent=MS.gene048016.t1
Gene Sequence

>MS.gene048016

ATGAATTCAATAGACTCACAATTTCAAGGAGGTTCATCTTTGTCTCAATCCACAATTCGGGCTCTTGAAGATTGTCGATTCCTTGCTGAATTGAGTTTTGAATACTTATCAAACACCTATACAACAACAAATCAATCTAGTAATGTTCTTCCAACTTCTCAAGCAGAAGACTTTGAAACTTTTCTAAGTGCCGTTTTGACTAACCAACAAACATGTTTGGAAGGTCTAAACACTATAGCTTCTGATCAGAGAGTGAGGAACGACTTAACGTCATCGATCTCTGATGACATGAAGCTTCATAGTGTCACCCTAGCCTTGTTCAAGAAAGGTTGGGTTCCTAAAAGTAAAATAAGAACATCATGGCCACAAAATGGCAAGCATTTGAATTTCAAAAATGGTCGTTTGCCATTGAAGATGTCAAATAAAGCACGTGCTATTTATGATTCTGCTAGACGCAATGGGAGAAAACTACTTCAAACTAATACTAATGAAGATAGTGTTGTGGTGAGTGATATTGTCGTTGTTAGTCAAGATGGAAGTGGAAACTTTACCACTATCAATGACGCAGTAGCTGCTGCACCAAATAACACGGTTGCTAGTGATGGATACTTCTTCATATTTATCACCAAAGGTGTGTGTCAAGAGTATGTATCTATACCCAAAAACAAAAAGTACTTGATGATGGTTGGAGAGGGAATCAATCAAACAGTTATCACCGGAGACCACAATGTTGTTGATGGTTTCACAACATTCAATTCAGCCACATTTGGTAAGCAAATTTAATACTTGGACATATTAAATATACTATTAACAAAAAATGGTATATACCGATTTTTAAACGTATATTTGATGAATGGTTTGAAAATTTTGTCGCTAATGTGATTGAAAATTTCCGACTTTTACAATGATTGCTAAAAGGCAATTTTTTTTTTTTAGTTTACAATTACTCACACAAATAGTGTTAATATATTTTATATTGTGATTTATGGCATGCATGAAGATAATCTATATGTTAAAAATTTCACAAATTTGACGTTTCTTGTGAATTTTCAGCCGTAGTTGGTCAAGGGTTCGTAGCAGTTAACATAACATTTCGCAACACCGCTGGACCAAGCAAACACCAAGCAGTTGCAATGAGAAGTGGAGCAGATATGTCCGCCTTCTATAGTTGTAGCTTTGAAGGGTATCAGGACACATTGTATACACATTCTCTAAGGCAGTTTTATCGAGAATGCGATATATACGGAACAGTTGACTTCATATTTGGAAATGGTGCCGTTGTTTTGCAAAATTGTAACATTTATCCTCGCCTTCCGCTAAGTGGACAATTCAATTCCATCACTGCTCAAGGTCGAACTGATCCAAATCAAAACACTGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCGAAAGTTGGAACTGTTCAAACATACCTAGGAAGACCGTGGAAAGAATATTCAAGGACAGTTTTTATGCAATCTTTCATGGACAGTTTCATAAACCCTGCTGGTTGGCATGAATGGAATGGTGATTTTGCATTGAATACTTTGTACTATGCAGAATACGGCAACAGAGGAGCGGGTTCAAGCACCGTGAATCGAGTGACATGGCCAAGTTATCATGTTATCGGTGCTACCGATGCAGCCAATTTCACGGTGTCCAATTTCTTGAGTGGTGATGATTGGATTCCTCAAACTGGTGTTCCATACTCTAGTGGATTGATATAG
Protein sequence

>MS.gene048016.t1

MNSIDSQFQGGSSLSQSTIRALEDCRFLAELSFEYLSNTYTTTNQSSNVLPTSQAEDFETFLSAVLTNQQTCLEGLNTIASDQRVRNDLTSSISDDMKLHSVTLALFKKGWVPKSKIRTSWPQNGKHLNFKNGRLPLKMSNKARAIYDSARRNGRKLLQTNTNEDSVVVSDIVVVSQDGSGNFTTINDAVAAAPNNTVASDGYFFIFITKGVCQEYVSIPKNKKYLMMVGEGINQTVITGDHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVAMRSGADMSAFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINPAGWHEWNGDFALNTLYYAEYGNRGAGSSTVNRVTWPSYHVIGATDAANFTVSNFLSGDDWIPQTGVPYSSGLI