AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98992

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98992.t1 MTR_1g054880 94.812 559 29 0 1 559 1 559 0.0 1081
MS.gene98992.t1 MTR_1g088020 86.275 561 70 2 1 559 1 556 0.0 986
MS.gene98992.t1 MTR_1g088225 85.740 561 71 3 1 559 1 554 0.0 972
MS.gene98992.t1 MTR_7g108890 73.179 563 147 3 1 559 1 563 0.0 857
MS.gene98992.t1 MTR_0458s0010 73.535 563 101 7 1 559 1 519 0.0 790
MS.gene98992.t1 MTR_7g108875 66.365 553 175 4 16 559 15 565 0.0 763
MS.gene98992.t1 MTR_7g108900 66.855 531 171 4 31 558 32 560 0.0 737
MS.gene98992.t1 MTR_1g083520 50.733 546 237 8 17 558 11 528 0.0 529
MS.gene98992.t1 MTR_0458s0030 91.386 267 23 0 293 559 49 315 0.0 521
MS.gene98992.t1 MTR_0458s0030 60.714 56 17 1 1 56 1 51 5.51e-14 73.6
MS.gene98992.t1 MTR_1g088040 91.386 267 23 0 293 559 49 315 0.0 521
MS.gene98992.t1 MTR_1g088040 60.714 56 17 1 1 56 1 51 5.51e-14 73.6
MS.gene98992.t1 MTR_3g010770 50.642 545 240 9 37 559 39 576 1.31e-179 519
MS.gene98992.t1 MTR_8g042910 50.929 538 245 7 37 558 78 612 2.40e-179 520
MS.gene98992.t1 MTR_7g108905 51.245 482 204 10 83 558 100 556 1.57e-155 456
MS.gene98992.t1 MTR_4g025690 45.989 561 239 16 8 558 7 513 1.95e-144 426
MS.gene98992.t1 MTR_4g025730 47.610 502 209 15 59 558 60 509 1.08e-139 414
MS.gene98992.t1 MTR_1g008140 47.390 479 218 8 96 558 147 607 3.04e-138 414
MS.gene98992.t1 MTR_2g044810 42.226 566 272 12 10 558 7 534 1.88e-134 402
MS.gene98992.t1 MTR_2g044880 46.488 484 206 9 85 558 85 525 3.87e-134 400
MS.gene98992.t1 MTR_7g050980 46.512 473 204 12 96 558 122 555 3.66e-133 399
MS.gene98992.t1 MTR_8g023310 46.735 490 214 12 88 558 128 589 6.56e-133 400
MS.gene98992.t1 MTR_7g112580 45.629 469 217 10 96 558 106 542 7.74e-133 398
MS.gene98992.t1 MTR_4g124520 48.019 429 191 8 132 558 123 521 1.01e-131 394
MS.gene98992.t1 MTR_4g087980 46.055 469 215 8 93 558 83 516 1.08e-131 394
MS.gene98992.t1 MTR_8g042900 45.020 502 241 12 62 558 110 581 4.89e-131 394
MS.gene98992.t1 MTR_4g025670 44.561 478 217 7 86 558 55 489 1.02e-130 390
MS.gene98992.t1 MTR_8g104655 42.727 550 280 11 15 558 21 541 4.06e-128 385
MS.gene98992.t1 MTR_4g087970 45.011 471 215 10 96 558 83 517 4.24e-128 385
MS.gene98992.t1 MTR_8g104645 55.891 331 142 3 230 558 44 372 4.46e-128 379
MS.gene98992.t1 MTR_3g091380 43.253 541 263 13 37 558 82 597 4.58e-128 387
MS.gene98992.t1 MTR_3g010780 42.771 498 256 9 62 558 105 574 6.45e-128 386
MS.gene98992.t1 MTR_7g050950 40.331 543 261 14 36 558 54 553 1.85e-126 382
MS.gene98992.t1 MTR_7g050870 41.296 540 261 14 36 558 54 554 2.63e-126 382
MS.gene98992.t1 MTR_4g035980 40.824 534 270 14 37 558 40 539 6.75e-122 370
MS.gene98992.t1 MTR_3g033690 39.261 568 274 15 12 558 9 526 5.67e-121 367
MS.gene98992.t1 MTR_7g053360 39.298 570 274 16 11 558 8 527 2.13e-120 365
MS.gene98992.t1 MTR_4g124550 42.549 463 251 6 96 558 146 593 1.21e-119 366
MS.gene98992.t1 MTR_3g008640 39.894 564 279 15 11 558 8 527 1.53e-119 363
MS.gene98992.t1 MTR_3g008700 40.185 540 257 14 37 558 36 527 2.95e-119 362
MS.gene98992.t1 MTR_3g008720 39.394 561 286 13 11 558 8 527 2.98e-119 362
MS.gene98992.t1 MTR_1g086190 37.058 537 300 9 36 558 51 563 2.70e-110 340
MS.gene98992.t1 MTR_8g023150 38.447 541 281 16 34 558 78 582 1.42e-108 337
MS.gene98992.t1 MTR_1g086210 36.563 547 306 11 34 558 42 569 2.40e-107 333
MS.gene98992.t1 MTR_1g083510 39.623 477 259 11 96 557 120 582 7.33e-106 330
MS.gene98992.t1 MTR_2g044810 57.540 252 107 0 307 558 214 465 1.12e-105 325
MS.gene98992.t1 MTR_7g112590 36.127 537 316 9 34 557 60 582 6.82e-103 322
MS.gene98992.t1 MTR_2g044660 50.799 313 147 3 246 558 327 632 2.46e-100 317
MS.gene98992.t1 MTR_8g104580 38.364 550 271 15 15 558 13 500 6.52e-100 311
MS.gene98992.t1 MTR_3g095920 34.333 600 304 17 5 557 7 563 2.48e-98 310
MS.gene98992.t1 MTR_0618s0020 60.088 228 90 1 332 558 1 228 2.40e-97 295
MS.gene98992.t1 MTR_7g110560 35.338 532 317 11 34 559 40 550 1.71e-96 305
MS.gene98992.t1 MTR_1g083490 33.640 544 302 9 34 554 64 571 6.08e-96 304
MS.gene98992.t1 MTR_4g005180 33.640 544 302 9 34 554 46 553 2.68e-95 302
MS.gene98992.t1 MTR_4g120280 39.140 442 230 10 130 557 155 571 2.99e-95 302
MS.gene98992.t1 MTR_1g083470 36.069 463 272 6 96 554 124 566 3.36e-95 302
MS.gene98992.t1 MTR_1g083500 36.069 463 272 6 96 554 124 566 3.36e-95 302
MS.gene98992.t1 MTR_4g005170 33.640 544 302 9 34 554 64 571 4.64e-95 303
MS.gene98992.t1 MTR_8g093460 36.190 525 290 13 37 547 47 540 3.29e-94 299
MS.gene98992.t1 MTR_7g110490 37.131 474 278 9 93 558 105 566 6.73e-94 298
MS.gene98992.t1 MTR_7g110510 37.131 474 278 9 93 558 105 566 6.73e-94 298
MS.gene98992.t1 MTR_4g120290 38.549 441 234 10 130 557 155 571 1.32e-93 298
MS.gene98992.t1 MTR_7g110440 35.881 471 290 6 96 558 108 574 1.19e-91 293
MS.gene98992.t1 MTR_2g436040 32.979 564 324 11 8 554 16 542 8.61e-91 291
MS.gene98992.t1 MTR_5g083620 41.243 354 174 8 230 558 12 356 1.22e-84 267
MS.gene98992.t1 MTR_2g436050 33.333 540 311 13 34 557 57 563 2.19e-83 271
MS.gene98992.t1 MTR_8g088610 40.979 327 183 5 230 554 54 372 3.44e-82 261
MS.gene98992.t1 MTR_7g110420 33.673 490 279 10 96 558 108 578 8.88e-77 254
MS.gene98992.t1 MTR_7g107180 42.902 317 161 8 246 558 7 307 1.23e-74 239
MS.gene98992.t1 MTR_2g105560 41.009 317 165 8 246 558 41 339 8.76e-74 238
MS.gene98992.t1 MTR_7g110430 32.773 476 264 10 96 558 108 540 1.39e-71 239
MS.gene98992.t1 MTR_7g111560 30.511 567 331 16 13 558 32 556 5.19e-70 235
MS.gene98992.t1 MTR_6g024165 36.474 329 173 10 231 547 30 334 9.88e-55 188
MS.gene98992.t1 MTR_1g086540 33.623 345 196 9 214 547 22 344 3.04e-54 187
MS.gene98992.t1 MTR_6g088810 36.066 305 167 6 254 547 90 377 6.82e-52 182
MS.gene98992.t1 MTR_8g102380 35.987 314 171 7 247 547 81 377 1.12e-51 181
MS.gene98992.t1 MTR_6g012800 33.642 324 180 9 245 556 5 305 2.29e-51 179
MS.gene98992.t1 MTR_7g092780 33.974 312 182 6 246 547 90 387 9.88e-49 174
MS.gene98992.t1 MTR_7g011530 33.677 291 169 5 241 521 1 277 1.51e-47 168
MS.gene98992.t1 MTR_6g042660 33.910 289 165 6 238 521 29 296 1.34e-46 166
MS.gene98992.t1 MTR_2g039530 37.987 308 152 11 230 526 40 319 5.30e-45 162
MS.gene98992.t1 MTR_5g083590 30.159 315 167 5 246 559 7 269 1.08e-44 159
MS.gene98992.t1 MTR_7g102600 30.571 350 217 6 210 547 58 393 4.48e-44 161
MS.gene98992.t1 MTR_4g124740 32.268 313 176 8 245 547 53 339 1.72e-43 158
MS.gene98992.t1 MTR_6g042690 32.915 319 184 9 238 547 31 328 4.35e-43 157
MS.gene98992.t1 MTR_2g033970 31.731 312 184 8 246 548 56 347 1.72e-42 155
MS.gene98992.t1 MTR_5g095490 33.117 308 177 7 252 547 67 357 2.44e-42 155
MS.gene98992.t1 MTR_8g102380 37.023 262 136 7 247 495 81 326 8.58e-42 153
MS.gene98992.t1 MTR_5g012600 31.132 318 190 7 245 550 62 362 1.18e-41 154
MS.gene98992.t1 MTR_1g033050 35.211 284 161 5 245 521 17 284 1.57e-41 152
MS.gene98992.t1 MTR_5g093970 32.573 307 190 6 242 547 39 329 7.27e-40 148
MS.gene98992.t1 MTR_5g088300 32.573 307 183 7 242 547 33 316 5.71e-38 142
MS.gene98992.t1 MTR_2g436600 30.671 313 177 11 246 548 55 337 4.47e-37 140
MS.gene98992.t1 MTR_5g088290 30.293 307 191 6 242 547 44 328 3.84e-35 135
MS.gene98992.t1 MTR_4g051810 30.097 309 195 6 241 549 32 319 7.08e-34 131
MS.gene98992.t1 MTR_4g074290 30.671 313 190 8 243 547 68 361 4.60e-33 130
MS.gene98992.t1 MTR_2g073390 31.410 312 185 10 245 547 70 361 8.62e-33 129
MS.gene98992.t1 MTR_8g036225 30.599 317 184 8 245 549 32 324 1.60e-32 127
MS.gene98992.t1 MTR_5g088280 30.065 306 192 6 242 547 35 318 2.62e-32 127
MS.gene98992.t1 MTR_0009s0350 33.684 285 166 8 243 520 68 336 4.21e-32 127
MS.gene98992.t1 MTR_0009s0340 33.684 285 166 8 243 520 68 336 4.21e-32 127
MS.gene98992.t1 MTR_6g025590 36.066 183 98 6 231 403 38 211 1.43e-24 102
MS.gene98992.t1 MTR_0408s0030 35.878 131 70 4 418 547 31 148 2.72e-18 82.4
MS.gene98992.t1 MTR_2g436070 26.780 295 178 11 34 320 57 321 4.68e-16 80.5
MS.gene98992.t1 MTR_6g024200 29.651 172 100 4 377 547 125 276 1.26e-15 77.8
MS.gene98992.t1 MTR_7g102580 46.512 86 36 2 323 403 73 153 1.37e-15 74.7
MS.gene98992.t1 MTR_4g130790 29.167 192 124 5 249 432 25 212 4.89e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98992.t1 AT1G02810 60.900 578 195 9 8 559 6 578 0.0 699
MS.gene98992.t1 AT4G02330 60.595 571 203 11 9 559 4 572 0.0 692
MS.gene98992.t1 AT2G47550 62.082 538 192 7 27 559 29 559 0.0 660
MS.gene98992.t1 AT3G10720 49.351 539 252 9 37 559 83 616 4.92e-172 501
MS.gene98992.t1 AT5G04970 46.875 544 258 9 37 559 88 621 3.27e-165 484
MS.gene98992.t1 AT2G45220 43.238 562 251 14 13 558 2 511 5.60e-140 415
MS.gene98992.t1 AT2G26440 43.045 532 272 10 35 558 39 547 4.05e-136 406
MS.gene98992.t1 AT3G60730 46.313 434 217 7 131 558 96 519 1.72e-132 396
MS.gene98992.t1 AT5G51490 44.511 501 230 9 63 558 79 536 4.05e-131 393
MS.gene98992.t1 AT3G43270 47.122 469 221 9 96 559 80 526 7.66e-131 392
MS.gene98992.t1 AT1G11580 39.451 583 288 12 1 558 15 557 2.18e-130 392
MS.gene98992.t1 AT4G33220 47.046 474 222 10 96 558 68 523 5.43e-130 390
MS.gene98992.t1 AT1G11580 39.451 583 288 12 1 558 36 578 6.15e-130 392
MS.gene98992.t1 AT3G05620 43.841 479 212 7 96 558 104 541 1.70e-129 389
MS.gene98992.t1 AT1G53830 43.017 537 274 11 34 554 63 583 1.06e-127 386
MS.gene98992.t1 AT1G23200 40.657 578 277 17 11 558 13 554 8.65e-126 380
MS.gene98992.t1 AT5G53370 42.644 537 263 13 37 558 79 585 2.13e-125 380
MS.gene98992.t1 AT5G53370 42.644 537 263 13 37 558 115 621 5.03e-125 380
MS.gene98992.t1 AT3G49220 46.560 436 209 8 128 558 180 596 2.28e-124 378
MS.gene98992.t1 AT4G33220 55.193 337 143 3 223 558 73 402 3.04e-124 371
MS.gene98992.t1 AT3G49220 46.560 436 209 8 128 558 225 641 5.53e-124 379
MS.gene98992.t1 AT3G14310 45.567 485 224 11 96 558 126 592 7.41e-124 377
MS.gene98992.t1 AT3G10720 63.462 260 95 0 300 559 1 260 2.73e-123 363
MS.gene98992.t1 AT5G04960 39.332 539 274 13 30 556 65 562 6.38e-123 373
MS.gene98992.t1 AT3G05610 40.977 471 251 4 93 559 119 566 1.72e-121 373
MS.gene98992.t1 AT5G51500 46.404 431 199 9 132 558 138 540 6.10e-120 365
MS.gene98992.t1 AT3G10710 39.587 533 280 11 30 558 67 561 1.79e-119 364
MS.gene98992.t1 AT4G02300 40.868 553 279 13 16 558 18 532 5.90e-119 362
MS.gene98992.t1 AT2G26450 38.246 536 286 12 34 558 110 611 1.17e-116 358
MS.gene98992.t1 AT4G02320 42.566 491 235 11 77 554 58 514 1.62e-116 355
MS.gene98992.t1 AT4G00190 40.684 526 251 15 36 558 7 474 5.94e-115 350
MS.gene98992.t1 AT1G53840 40.688 494 253 12 75 552 112 581 9.04e-115 353
MS.gene98992.t1 AT4G33230 38.462 533 298 10 34 558 96 606 2.42e-114 352
MS.gene98992.t1 AT2G43050 40.779 488 239 8 78 559 74 517 1.51e-113 347
MS.gene98992.t1 AT5G27870 39.362 470 250 6 96 558 121 562 6.71e-113 352
MS.gene98992.t1 AT3G59010 43.953 430 210 7 131 559 130 529 3.33e-110 339
MS.gene98992.t1 AT5G49180 40.756 476 263 6 83 555 108 567 2.58e-108 336
MS.gene98992.t1 AT4G03930 42.424 429 216 6 131 558 126 524 4.10e-104 323
MS.gene98992.t1 AT3G47400 49.851 335 162 4 227 558 263 594 5.20e-104 325
MS.gene98992.t1 AT3G27980 42.019 426 212 6 134 558 106 497 8.24e-103 319
MS.gene98992.t1 AT1G11590 41.958 429 218 6 131 558 126 524 2.53e-101 316
MS.gene98992.t1 AT3G14300 40.426 470 244 11 96 555 525 968 3.20e-101 327
MS.gene98992.t1 AT3G06830 40.492 447 215 8 131 556 150 566 2.31e-100 315
MS.gene98992.t1 AT5G20860 37.051 529 264 15 51 558 58 538 1.15e-98 310
MS.gene98992.t1 AT4G15980 45.122 328 176 2 228 554 374 698 2.47e-86 282
MS.gene98992.t1 AT4G15980 45.122 328 176 2 228 554 384 708 4.05e-86 281
MS.gene98992.t1 AT5G64640 36.555 476 242 13 103 551 160 602 5.88e-86 278
MS.gene98992.t1 AT5G09760 46.519 316 144 8 246 546 267 572 9.44e-86 277
MS.gene98992.t1 AT5G09760 46.519 316 144 8 246 546 241 546 9.64e-86 276
MS.gene98992.t1 AT1G11370 48.837 258 129 1 232 489 32 286 5.13e-83 261
MS.gene98992.t1 AT2G47030 43.810 315 170 4 247 558 278 588 3.91e-78 258
MS.gene98992.t1 AT5G20860 32.865 569 273 17 9 545 6 497 6.00e-78 255
MS.gene98992.t1 AT2G47040 30.872 596 350 13 11 558 14 595 3.21e-76 253
MS.gene98992.t1 AT3G62170 42.857 315 173 4 247 558 278 588 2.35e-74 248
MS.gene98992.t1 AT5G19730 35.032 314 176 6 245 547 85 381 4.42e-52 182
MS.gene98992.t1 AT2G36710 32.951 349 199 7 211 552 70 390 5.05e-51 181
MS.gene98992.t1 AT1G05310 34.451 328 180 7 233 547 83 388 3.96e-50 177
MS.gene98992.t1 AT3G29090 33.837 331 178 11 240 555 1 305 4.17e-49 172
MS.gene98992.t1 AT2G36700 32.792 308 187 5 245 547 41 333 5.82e-49 173
MS.gene98992.t1 AT2G21610 33.003 303 183 6 245 547 50 332 2.16e-48 172
MS.gene98992.t1 AT2G21610 33.003 303 183 6 245 547 55 337 2.42e-48 172
MS.gene98992.t1 AT5G07430 33.544 316 187 7 237 547 58 355 8.28e-46 165
MS.gene98992.t1 AT5G18990 36.426 291 150 7 246 521 29 299 3.35e-45 162
MS.gene98992.t1 AT3G17060 29.375 320 197 7 238 548 38 337 1.91e-44 161
MS.gene98992.t1 AT3G24130 32.609 322 182 7 246 553 34 334 8.46e-44 159
MS.gene98992.t1 AT5G47500 31.746 315 186 7 245 547 60 357 3.35e-43 158
MS.gene98992.t1 AT5G07420 32.686 309 183 8 245 547 66 355 1.65e-41 153
MS.gene98992.t1 AT5G55590 32.075 318 187 7 242 547 78 378 1.52e-39 148
MS.gene98992.t1 AT2G19150 28.875 329 208 6 234 554 29 339 3.04e-39 147
MS.gene98992.t1 AT5G26810 31.975 319 189 9 242 547 30 333 2.73e-37 141
MS.gene98992.t1 AT5G55590 33.840 263 147 6 242 492 78 325 4.31e-37 140
MS.gene98992.t1 AT2G47280 31.056 322 188 8 246 553 35 336 6.04e-37 140
MS.gene98992.t1 AT1G44980 43.716 183 99 2 230 412 63 241 9.84e-37 137
MS.gene98992.t1 AT1G69940 29.773 309 192 8 245 547 66 355 3.84e-36 139
MS.gene98992.t1 AT5G61680 31.613 310 186 9 245 547 68 358 4.08e-36 139
MS.gene98992.t1 AT5G07410 29.773 309 192 8 245 547 66 355 6.57e-36 138
MS.gene98992.t1 AT2G19150 30.970 268 161 5 234 493 29 280 3.23e-34 131
MS.gene98992.t1 AT3G49220 30.097 206 121 7 128 329 225 411 2.33e-16 82.0

Find 105 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTATATGCAATCCTTTA+TGG 0.127257 1.2:-41501655 MS.gene98992:CDS
CCGTAAGTTTGTGAACTTAT+TGG 0.152481 1.2:-41503198 MS.gene98992:CDS
GGAACAGTTGACTTCATATT+TGG 0.153800 1.2:-41501894 MS.gene98992:CDS
TCACTTGCAACTGTGTTATT+TGG 0.163884 1.2:+41502615 None:intergenic
GTACCCTTGCAAATGGTTTC+TGG 0.200233 1.2:+41503317 None:intergenic
CACTTGCAACTGTGTTATTT+GGG 0.211734 1.2:+41502616 None:intergenic
AACTGATGAAGATAGTATTT+TGG 0.238098 1.2:-41502712 MS.gene98992:CDS
TTCAAAGCTGCAACTATAAA+AGG 0.248256 1.2:+41501980 None:intergenic
GGATTAAATTGTCCACTTAA+AGG 0.252484 1.2:+41501825 None:intergenic
TTTACAATAAGTAGGGTTTA+TGG 0.266824 1.2:+41503295 None:intergenic
GTTTGAACAGTTCCAACTTT+AGG 0.279022 1.2:+41501714 None:intergenic
AGAACATCATGGCCACAAAA+AGG 0.293871 1.2:-41502837 MS.gene98992:CDS
ACTTATTGTAAAACCGTTCT+TGG 0.299570 1.2:-41503284 MS.gene98992:CDS
ACCGTTCTTGGTAGTCAAAA+TGG 0.304777 1.2:-41503272 MS.gene98992:CDS
GAATACTTATCAAATACTTA+TGG 0.313182 1.2:-41503089 MS.gene98992:CDS
TGGCCTGGTTATCATGTTAT+TGG 0.321352 1.2:-41501513 MS.gene98992:CDS
GACTAACCAACAAACATGTT+TGG 0.337162 1.2:-41502991 MS.gene98992:CDS
GATAGTTTCATAAACCCTTC+TGG 0.341399 1.2:-41501633 MS.gene98992:CDS
TATTAAACCAGCAGATGATT+TGG 0.346208 1.2:-41501739 MS.gene98992:CDS
ACCCTTCTGGTTGGCGTGAA+TGG 0.353642 1.2:-41501620 MS.gene98992:CDS
AAGAAATACTTAATGATGAT+TGG 0.358837 1.2:-41502528 MS.gene98992:CDS
TATAGAGAATGTGATATCTA+TGG 0.361336 1.2:-41501915 MS.gene98992:CDS
ATCAATCAAACAATTATTAC+AGG 0.371518 1.2:-41502498 MS.gene98992:CDS
AAATCTTCGGCTTGAGAAGC+TGG 0.379722 1.2:+41503038 None:intergenic
AAGGAAAGTTTCAAAATCTT+CGG 0.386339 1.2:+41503025 None:intergenic
ACAGTGTCTAACTTTGTTAG+TGG 0.386747 1.2:-41501468 MS.gene98992:CDS
TCTCGGGCATCCAACCCTTC+AGG 0.388766 1.2:+41502868 None:intergenic
GTTTATGAAACTATCCATAA+AGG 0.390037 1.2:+41501641 None:intergenic
TATCCTCGCCTTCCTTTAAG+TGG 0.400077 1.2:-41501837 MS.gene98992:CDS
GACCATCCAAACATGTTTGT+TGG 0.404138 1.2:+41502985 None:intergenic
TTGATAAGTATTCAAAACTT+AGG 0.406808 1.2:+41503099 None:intergenic
GTTGACTTCATATTTGGAAA+TGG 0.407911 1.2:-41501888 MS.gene98992:CDS
GCTTTATTTGACATCTTCAA+TGG 0.414247 1.2:+41502783 None:intergenic
GTTCACAAACTTACGGGATT+GGG 0.426105 1.2:+41503205 None:intergenic
AATGGAAACATATATGACTA+TGG 0.430610 1.2:-41503254 MS.gene98992:CDS
TATATCAATCCACTCATGTA+AGG 0.434854 1.2:+41501417 None:intergenic
CAATAAGTTCACAAACTTAC+GGG 0.436945 1.2:+41503199 None:intergenic
CACTATATACACATTCTTTG+AGG 0.437264 1.2:-41501944 MS.gene98992:CDS
AGTTCACAAACTTACGGGAT+TGG 0.438103 1.2:+41503204 None:intergenic
CCAATAAGTTCACAAACTTA+CGG 0.451950 1.2:+41503198 None:intergenic
ATTGTTGTTGTTAGTCAAGA+TGG 0.454724 1.2:-41502681 MS.gene98992:CDS
ACTTTGTTAGTGGTGATGAT+TGG 0.464508 1.2:-41501458 MS.gene98992:CDS
CACTCTTTGATCAGAAGCTG+TGG 0.465564 1.2:+41502956 None:intergenic
GTTCGACCTTGAGCTGTGAT+AGG 0.465990 1.2:+41501804 None:intergenic
TAGCCTTGTTCCTGAAGGGT+TGG 0.466068 1.2:-41502878 MS.gene98992:CDS
CTATTTGCAGTGCTTGAACC+TGG 0.466600 1.2:+41501543 None:intergenic
GTTCTTGAATATTCTTTCCA+TGG 0.474078 1.2:+41501678 None:intergenic
GATGATTTGGCTCCTAAAGT+TGG 0.474444 1.2:-41501726 MS.gene98992:CDS
AAACTTACGGGATTGGGATA+AGG 0.474593 1.2:+41503211 None:intergenic
GTTTATGGTACCCTTGCAAA+TGG 0.476298 1.2:+41503310 None:intergenic
TTATTGGACTCATATCTTCA+AGG 0.477449 1.2:-41503182 MS.gene98992:CDS
TTTGCAGCTGTGGTTGCTCA+AGG 0.483394 1.2:-41502092 MS.gene98992:intron
GGAAACATACAACTTCATAA+AGG 0.484214 1.2:+41503394 None:intergenic
AACCCTAGCCTTGTTCCTGA+AGG 0.488138 1.2:-41502883 MS.gene98992:CDS
TTAGGAGCCAAATCATCTGC+TGG 0.490137 1.2:+41501732 None:intergenic
TATGCAGAATATGATAATAG+AGG 0.503332 1.2:-41501567 MS.gene98992:CDS
TGTTTGTTGGTTAGTCAAAA+CGG 0.510632 1.2:+41502998 None:intergenic
ACATTCAATTCAGCCACCTT+CGG 0.511026 1.2:-41502447 MS.gene98992:intron
AGCTATTGCATCATTGATAG+TGG 0.514897 1.2:+41502644 None:intergenic
TATGATTCTGCTAGACGCCA+TGG 0.522383 1.2:-41502750 MS.gene98992:CDS
GAACAAGATTGAAAGTAGAA+AGG 0.524275 1.2:+41503373 None:intergenic
TGTGGTTGCTCAAGGGTTCG+TGG 0.525099 1.2:-41502084 MS.gene98992:CDS
ATTCTTTCCATGGTCTCCCT+AGG 0.526798 1.2:+41501688 None:intergenic
AACCAACAAACATGTTTGGA+TGG 0.529492 1.2:-41502987 MS.gene98992:CDS
AACCCTTCAGGAACAAGGCT+AGG 0.539952 1.2:+41502880 None:intergenic
AATAACACAGTTGCAAGTGA+TGG 0.540292 1.2:-41502612 MS.gene98992:CDS
TTGCAGCTGTGGTTGCTCAA+GGG 0.540541 1.2:-41502091 MS.gene98992:intron
TAAATTGTCCACTTAAAGGA+AGG 0.540732 1.2:+41501829 None:intergenic
GCAAATAGAGTAACATGGCC+TGG 0.542797 1.2:-41501528 MS.gene98992:CDS
ATAACATTTCGCAACACCGC+TGG 0.545912 1.2:-41502053 MS.gene98992:CDS
TTCCATTCACGCCAACCAGA+AGG 0.547863 1.2:+41501618 None:intergenic
ATTCAAAACTTAGGTTAGCA+AGG 0.548004 1.2:+41503108 None:intergenic
GATGATTGGATTCCTCAAAC+TGG 0.552199 1.2:-41501444 MS.gene98992:CDS
GGAACTGTTCAAACATACCT+AGG 0.552848 1.2:-41501705 MS.gene98992:CDS
TTTATAGTTGCAGCTTTGAA+GGG 0.553426 1.2:-41501977 MS.gene98992:CDS
ACCCTAGCCTTGTTCCTGAA+GGG 0.553675 1.2:-41502882 MS.gene98992:CDS
ATGTAAGGGACACCAGTTTG+AGG 0.558666 1.2:+41501432 None:intergenic
CAAGCAGTTGCACTAAGAAG+TGG 0.560018 1.2:-41502017 MS.gene98992:CDS
CCCTTGCAAATGGTTTCTGG+TGG 0.562538 1.2:+41503320 None:intergenic
TCCACCAGAAACCATTTGCA+AGG 0.564730 1.2:-41503321 MS.gene98992:CDS
GGCAATCGCAATGTCGCTGA+TGG 0.564812 1.2:-41502477 MS.gene98992:CDS
CATCCAACCCTTCAGGAACA+AGG 0.568039 1.2:+41502875 None:intergenic
ATCTTCAAGAGCGCGAATTG+TGG 0.568143 1.2:+41503139 None:intergenic
ATGATTCTGCTAGACGCCAT+GGG 0.571818 1.2:-41502749 MS.gene98992:CDS
ACCCTTCAGGAACAAGGCTA+GGG 0.572687 1.2:+41502881 None:intergenic
AGAATAAAATAAGAACATCA+TGG 0.573410 1.2:-41502848 MS.gene98992:CDS
GTTGTTAGTCAAGATGGAAG+TGG 0.573418 1.2:-41502675 MS.gene98992:CDS
GTTTCATAAACCCTTCTGGT+TGG 0.577634 1.2:-41501629 MS.gene98992:CDS
TTTAATCCTATCACAGCTCA+AGG 0.579785 1.2:-41501810 MS.gene98992:CDS
GGTTAGTCAAAACGGCGCTA+AGG 0.579986 1.2:+41503006 None:intergenic
TACTTAATGATGATTGGAGA+AGG 0.582331 1.2:-41502522 MS.gene98992:CDS
TCCATTCACGCCAACCAGAA+GGG 0.592883 1.2:+41501619 None:intergenic
GAATATGATAATAGAGGACC+AGG 0.596632 1.2:-41501561 MS.gene98992:CDS
AAACATACCTAGGGAGACCA+TGG 0.607181 1.2:-41501695 MS.gene98992:CDS
ACCGACCCGAATCAAAACAC+TGG 0.608494 1.2:-41501783 MS.gene98992:CDS
ATATCAATCCACTCATGTAA+GGG 0.611046 1.2:+41501418 None:intergenic
TGTCCACTTAAAGGAAGGCG+AGG 0.613023 1.2:+41501834 None:intergenic
ACTGGTGTCCCTTACATGAG+TGG 0.613192 1.2:-41501426 MS.gene98992:CDS
TCTGGTTGGCGTGAATGGAA+TGG 0.615333 1.2:-41501615 MS.gene98992:CDS
CCACCAGAAACCATTTGCAA+GGG 0.619550 1.2:-41503320 MS.gene98992:CDS
ACTTGCAACTGTGTTATTTG+GGG 0.623302 1.2:+41502617 None:intergenic
TGTGAAATTTGCTGCATCAG+TGG 0.628516 1.2:+41501488 None:intergenic
GAACTGTTCAAACATACCTA+GGG 0.647641 1.2:-41501704 MS.gene98992:CDS
GCACCAATAACATGATAACC+AGG 0.649380 1.2:+41501510 None:intergenic
GCACTGCAAATAGAGTAACA+TGG 0.741232 1.2:-41501533 MS.gene98992:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATACTTAATGATGAT+TGG - chr1.2:41502301-41502320 MS.gene98992:intron 20.0%
!! AGAATAAAATAAGAACATCA+TGG - chr1.2:41501981-41502000 MS.gene98992:CDS 20.0%
!! ATCAATCAAACAATTATTAC+AGG - chr1.2:41502331-41502350 MS.gene98992:intron 20.0%
!! GAATACTTATCAAATACTTA+TGG - chr1.2:41501740-41501759 MS.gene98992:CDS 20.0%
!! TTGATAAGTATTCAAAACTT+AGG + chr1.2:41501733-41501752 None:intergenic 20.0%
!!! ATATTAATTTTTCTTACCGA+AGG + chr1.2:41502401-41502420 None:intergenic 20.0%
!!! TGAATAACGATTGATAATTT+TGG - chr1.2:41502574-41502593 MS.gene98992:CDS 20.0%
!!! TGATGTTCTTATTTTATTCT+CGG + chr1.2:41501981-41502000 None:intergenic 20.0%
! AAACACTTGAGTTTCAAAAA+TGG - chr1.2:41502016-41502035 MS.gene98992:CDS 25.0%
! AAGGAAAGTTTCAAAATCTT+CGG + chr1.2:41501807-41501826 None:intergenic 25.0%
! AATGGAAACATATATGACTA+TGG - chr1.2:41501575-41501594 MS.gene98992:CDS 25.0%
! AGTTTATATGCAATCCTTTA+TGG - chr1.2:41503174-41503193 MS.gene98992:CDS 25.0%
! GTTTATGAAACTATCCATAA+AGG + chr1.2:41503191-41503210 None:intergenic 25.0%
! TATAGAGAATGTGATATCTA+TGG - chr1.2:41502914-41502933 MS.gene98992:CDS 25.0%
! TATGCAGAATATGATAATAG+AGG - chr1.2:41503262-41503281 MS.gene98992:CDS 25.0%
! TATGTTTGTGTGATTAAATG+TGG + chr1.2:41502629-41502648 None:intergenic 25.0%
! TGTGAATATGTAGCAATTTA+TGG + chr1.2:41502449-41502468 None:intergenic 25.0%
! TTTACAATAAGTAGGGTTTA+TGG + chr1.2:41501537-41501556 None:intergenic 25.0%
!! AACTGATGAAGATAGTATTT+TGG - chr1.2:41502117-41502136 MS.gene98992:intron 25.0%
!!! GATGTTCTTATTTTATTCTC+GGG + chr1.2:41501980-41501999 None:intergenic 25.0%
!!! TAACGATTGATAATTTTGGT+TGG - chr1.2:41502578-41502597 MS.gene98992:CDS 25.0%
!!! TTTTGGTTGGTTTTTAACAA+CGG - chr1.2:41502591-41502610 MS.gene98992:CDS 25.0%
ACTTATTGTAAAACCGTTCT+TGG - chr1.2:41501545-41501564 MS.gene98992:CDS 30.0%
ATATCAATCCACTCATGTAA+GGG + chr1.2:41503414-41503433 None:intergenic 30.0%
ATGTAGCAATTTATGGTTTG+TGG + chr1.2:41502442-41502461 None:intergenic 30.0%
ATTCAAAACTTAGGTTAGCA+AGG + chr1.2:41501724-41501743 None:intergenic 30.0%
CAACAATTTCACTAACTTGA+TGG - chr1.2:41502704-41502723 MS.gene98992:CDS 30.0%
CAATAAGTTCACAAACTTAC+GGG + chr1.2:41501633-41501652 None:intergenic 30.0%
CACTATATACACATTCTTTG+AGG - chr1.2:41502885-41502904 MS.gene98992:CDS 30.0%
CCAATAAGTTCACAAACTTA+CGG + chr1.2:41501634-41501653 None:intergenic 30.0%
GAACAAGATTGAAAGTAGAA+AGG + chr1.2:41501459-41501478 None:intergenic 30.0%
GGAAACATACAACTTCATAA+AGG + chr1.2:41501438-41501457 None:intergenic 30.0%
GGATTAAATTGTCCACTTAA+AGG + chr1.2:41503007-41503026 None:intergenic 30.0%
GTTCTTGAATATTCTTTCCA+TGG + chr1.2:41503154-41503173 None:intergenic 30.0%
TAAATTGTCCACTTAAAGGA+AGG + chr1.2:41503003-41503022 None:intergenic 30.0%
TACTTAATGATGATTGGAGA+AGG - chr1.2:41502307-41502326 MS.gene98992:intron 30.0%
TATATCAATCCACTCATGTA+AGG + chr1.2:41503415-41503434 None:intergenic 30.0%
TATTAAACCAGCAGATGATT+TGG - chr1.2:41503090-41503109 MS.gene98992:CDS 30.0%
TTATTGGACTCATATCTTCA+AGG - chr1.2:41501647-41501666 MS.gene98992:CDS 30.0%
TTCAAAGCTGCAACTATAAA+AGG + chr1.2:41502852-41502871 None:intergenic 30.0%
! AGAACGGTTTTACAATAAGT+AGG + chr1.2:41501545-41501564 None:intergenic 30.0%
! ATTGTTGTTGTTAGTCAAGA+TGG - chr1.2:41502148-41502167 MS.gene98992:intron 30.0%
! GAACGGTTTTACAATAAGTA+GGG + chr1.2:41501544-41501563 None:intergenic 30.0%
! GTTGACTTCATATTTGGAAA+TGG - chr1.2:41502941-41502960 MS.gene98992:CDS 30.0%
! TGTTTGTTGGTTAGTCAAAA+CGG + chr1.2:41501834-41501853 None:intergenic 30.0%
! TTAATTTTTCTTACCGAAGG+TGG + chr1.2:41502398-41502417 None:intergenic 30.0%
!! GCTTTATTTGACATCTTCAA+TGG + chr1.2:41502049-41502068 None:intergenic 30.0%
!! GGTTTTTAACAACGGATTTT+TGG - chr1.2:41502599-41502618 MS.gene98992:CDS 30.0%
!! TTCCTCATTTTTATCACAGA+AGG - chr1.2:41502244-41502263 MS.gene98992:intron 30.0%
!! TTTATAGTTGCAGCTTTGAA+GGG - chr1.2:41502852-41502871 MS.gene98992:CDS 30.0%
!! TTTTATAGTTGCAGCTTTGA+AGG - chr1.2:41502851-41502870 MS.gene98992:CDS 30.0%
!!! AAATTCCAGTGTTTTGATTC+GGG + chr1.2:41503054-41503073 None:intergenic 30.0%
!!! GAAATTCCAGTGTTTTGATT+CGG + chr1.2:41503055-41503074 None:intergenic 30.0%
AACCAACAAACATGTTTGGA+TGG - chr1.2:41501842-41501861 MS.gene98992:CDS 35.0%
AATAACACAGTTGCAAGTGA+TGG - chr1.2:41502217-41502236 MS.gene98992:intron 35.0%
ACAGTGTCTAACTTTGTTAG+TGG - chr1.2:41503361-41503380 MS.gene98992:CDS 35.0%
AGCTATTGCATCATTGATAG+TGG + chr1.2:41502188-41502207 None:intergenic 35.0%
CACCTTCTGTGATAAAAATG+AGG + chr1.2:41502249-41502268 None:intergenic 35.0%
CCGTAAGTTTGTGAACTTAT+TGG - chr1.2:41501631-41501650 MS.gene98992:CDS 35.0%
CTATACTATGCCATGACTTA+TGG - chr1.2:41502657-41502676 MS.gene98992:CDS 35.0%
GAACTGTTCAAACATACCTA+GGG - chr1.2:41503125-41503144 MS.gene98992:CDS 35.0%
GAATATGATAATAGAGGACC+AGG - chr1.2:41503268-41503287 MS.gene98992:CDS 35.0%
GACTAACCAACAAACATGTT+TGG - chr1.2:41501838-41501857 MS.gene98992:CDS 35.0%
GATAGTTTCATAAACCCTTC+TGG - chr1.2:41503196-41503215 MS.gene98992:CDS 35.0%
GTTTGAACAGTTCCAACTTT+AGG + chr1.2:41503118-41503137 None:intergenic 35.0%
TTTAATCCTATCACAGCTCA+AGG - chr1.2:41503019-41503038 MS.gene98992:CDS 35.0%
! ACTTTGTTAGTGGTGATGAT+TGG - chr1.2:41503371-41503390 MS.gene98992:CDS 35.0%
! GGAACAGTTGACTTCATATT+TGG - chr1.2:41502935-41502954 MS.gene98992:CDS 35.0%
! TCACTTGCAACTGTGTTATT+TGG + chr1.2:41502217-41502236 None:intergenic 35.0%
!! ACTTGCAACTGTGTTATTTG+GGG + chr1.2:41502215-41502234 None:intergenic 35.0%
!! CACTTGCAACTGTGTTATTT+GGG + chr1.2:41502216-41502235 None:intergenic 35.0%
!! TTTGAAGTAGTTTTCTCCCA+TGG + chr1.2:41502099-41502118 None:intergenic 35.0%
!!! TCCATTTTGACTACCAAGAA+CGG + chr1.2:41501561-41501580 None:intergenic 35.0%
AAACTTACGGGATTGGGATA+AGG + chr1.2:41501621-41501640 None:intergenic 40.0%
ACATTCAATTCAGCCACCTT+CGG - chr1.2:41502382-41502401 MS.gene98992:intron 40.0%
AGAACATCATGGCCACAAAA+AGG - chr1.2:41501992-41502011 MS.gene98992:CDS 40.0%
AGTTCACAAACTTACGGGAT+TGG + chr1.2:41501628-41501647 None:intergenic 40.0%
GAACATCATGGCCACAAAAA+GGG - chr1.2:41501993-41502012 MS.gene98992:CDS 40.0%
GACCATCCAAACATGTTTGT+TGG + chr1.2:41501847-41501866 None:intergenic 40.0%
GATGATTGGATTCCTCAAAC+TGG - chr1.2:41503385-41503404 MS.gene98992:CDS 40.0%
GCACCAATAACATGATAACC+AGG + chr1.2:41503322-41503341 None:intergenic 40.0%
GCACTGCAAATAGAGTAACA+TGG - chr1.2:41503296-41503315 MS.gene98992:CDS 40.0%
GGAACTGTTCAAACATACCT+AGG - chr1.2:41503124-41503143 MS.gene98992:CDS 40.0%
GTTCACAAACTTACGGGATT+GGG + chr1.2:41501627-41501646 None:intergenic 40.0%
GTTGTTAGTCAAGATGGAAG+TGG - chr1.2:41502154-41502173 MS.gene98992:intron 40.0%
GTTTATGGTACCCTTGCAAA+TGG + chr1.2:41501522-41501541 None:intergenic 40.0%
GTTTCATAAACCCTTCTGGT+TGG - chr1.2:41503200-41503219 MS.gene98992:CDS 40.0%
TGGCCTGGTTATCATGTTAT+TGG - chr1.2:41503316-41503335 MS.gene98992:CDS 40.0%
TTCATGCATGCCATAAGTCA+TGG + chr1.2:41502670-41502689 None:intergenic 40.0%
! ACCGTTCTTGGTAGTCAAAA+TGG - chr1.2:41501557-41501576 MS.gene98992:CDS 40.0%
! CACTAACTTGATGGTTCATG+TGG - chr1.2:41502713-41502732 MS.gene98992:CDS 40.0%
! CTCAAGTGTTTCCCTTTTTG+TGG + chr1.2:41502007-41502026 None:intergenic 40.0%
! GATGATTTGGCTCCTAAAGT+TGG - chr1.2:41503103-41503122 MS.gene98992:CDS 40.0%
!! TGTGAAATTTGCTGCATCAG+TGG + chr1.2:41503344-41503363 None:intergenic 40.0%
AAACATACCTAGGGAGACCA+TGG - chr1.2:41503134-41503153 MS.gene98992:CDS 45.0%
ATAACATTTCGCAACACCGC+TGG - chr1.2:41502776-41502795 MS.gene98992:CDS 45.0%
ATGATTCTGCTAGACGCCAT+GGG - chr1.2:41502080-41502099 MS.gene98992:CDS 45.0%
ATGTAAGGGACACCAGTTTG+AGG + chr1.2:41503400-41503419 None:intergenic 45.0%
ATTCTTTCCATGGTCTCCCT+AGG + chr1.2:41503144-41503163 None:intergenic 45.0%
CAAGCAGTTGCACTAAGAAG+TGG - chr1.2:41502812-41502831 MS.gene98992:CDS 45.0%
CACTCTTTGATCAGAAGCTG+TGG + chr1.2:41501876-41501895 None:intergenic 45.0%
CCACCAGAAACCATTTGCAA+GGG - chr1.2:41501509-41501528 MS.gene98992:CDS 45.0%
CTATTTGCAGTGCTTGAACC+TGG + chr1.2:41503289-41503308 None:intergenic 45.0%
GCAAATAGAGTAACATGGCC+TGG - chr1.2:41503301-41503320 MS.gene98992:CDS 45.0%
GTACCCTTGCAAATGGTTTC+TGG + chr1.2:41501515-41501534 None:intergenic 45.0%
TATCCTCGCCTTCCTTTAAG+TGG - chr1.2:41502992-41503011 MS.gene98992:CDS 45.0%
TATGATTCTGCTAGACGCCA+TGG - chr1.2:41502079-41502098 MS.gene98992:CDS 45.0%
TCCACCAGAAACCATTTGCA+AGG - chr1.2:41501508-41501527 MS.gene98992:CDS 45.0%
TTAGGAGCCAAATCATCTGC+TGG + chr1.2:41503100-41503119 None:intergenic 45.0%
TTCATGTGGATTTGCAGCTG+TGG - chr1.2:41502727-41502746 MS.gene98992:CDS 45.0%
! AAATCTTCGGCTTGAGAAGC+TGG + chr1.2:41501794-41501813 None:intergenic 45.0%
! ATCTTCAAGAGCGCGAATTG+TGG + chr1.2:41501693-41501712 None:intergenic 45.0%
! TTGATGTTTTGCTGCTCCAG+CGG + chr1.2:41502795-41502814 None:intergenic 45.0%
!!! TCCAGTGTTTTGATTCGGGT+CGG + chr1.2:41503050-41503069 None:intergenic 45.0%
!!! AAAAAAAATATTTTATGATT+TGG + chr1.2:41502485-41502504 None:intergenic 5.0%
!!! TAAATTATTAAATTATTTTG+TGG + chr1.2:41502538-41502557 None:intergenic 5.0%
AACCCTTCAGGAACAAGGCT+AGG + chr1.2:41501952-41501971 None:intergenic 50.0%
ACCCTTCAGGAACAAGGCTA+GGG + chr1.2:41501951-41501970 None:intergenic 50.0%
ACCGACCCGAATCAAAACAC+TGG - chr1.2:41503046-41503065 MS.gene98992:CDS 50.0%
ACTGGTGTCCCTTACATGAG+TGG - chr1.2:41503403-41503422 MS.gene98992:CDS 50.0%
CATCCAACCCTTCAGGAACA+AGG + chr1.2:41501957-41501976 None:intergenic 50.0%
GTTCGACCTTGAGCTGTGAT+AGG + chr1.2:41503028-41503047 None:intergenic 50.0%
TCCATTCACGCCAACCAGAA+GGG + chr1.2:41503213-41503232 None:intergenic 50.0%
TCTGGTTGGCGTGAATGGAA+TGG - chr1.2:41503214-41503233 MS.gene98992:CDS 50.0%
TGTCCACTTAAAGGAAGGCG+AGG + chr1.2:41502998-41503017 None:intergenic 50.0%
TTCCATTCACGCCAACCAGA+AGG + chr1.2:41503214-41503233 None:intergenic 50.0%
TTGCAGCTGTGGTTGCTCAA+GGG - chr1.2:41502738-41502757 MS.gene98992:CDS 50.0%
TTTGCAGCTGTGGTTGCTCA+AGG - chr1.2:41502737-41502756 MS.gene98992:CDS 50.0%
! CCCTTGCAAATGGTTTCTGG+TGG + chr1.2:41501512-41501531 None:intergenic 50.0%
! GGTTAGTCAAAACGGCGCTA+AGG + chr1.2:41501826-41501845 None:intergenic 50.0%
!! AACCCTAGCCTTGTTCCTGA+AGG - chr1.2:41501946-41501965 MS.gene98992:CDS 50.0%
!! ACCCTAGCCTTGTTCCTGAA+GGG - chr1.2:41501947-41501966 MS.gene98992:CDS 50.0%
!! TAGCCTTGTTCCTGAAGGGT+TGG - chr1.2:41501951-41501970 MS.gene98992:CDS 50.0%
GGCAATCGCAATGTCGCTGA+TGG - chr1.2:41502352-41502371 MS.gene98992:intron 55.0%
TGTGGTTGCTCAAGGGTTCG+TGG - chr1.2:41502745-41502764 MS.gene98992:CDS 55.0%
! ACCCTTCTGGTTGGCGTGAA+TGG - chr1.2:41503209-41503228 MS.gene98992:CDS 55.0%
TCTCGGGCATCCAACCCTTC+AGG + chr1.2:41501964-41501983 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 41501416 41503435 41501416 ID=MS.gene98992
chr1.2 mRNA 41501416 41503435 41501416 ID=MS.gene98992.t1;Parent=MS.gene98992
chr1.2 exon 41502448 41503435 41502448 ID=MS.gene98992.t1.exon1;Parent=MS.gene98992.t1
chr1.2 CDS 41502448 41503435 41502448 ID=cds.MS.gene98992.t1;Parent=MS.gene98992.t1
chr1.2 exon 41501416 41502107 41501416 ID=MS.gene98992.t1.exon2;Parent=MS.gene98992.t1
chr1.2 CDS 41501416 41502107 41501416 ID=cds.MS.gene98992.t1;Parent=MS.gene98992.t1
Gene Sequence

>MS.gene98992

ATGGCTTTCAAAAACTTCACCTTTATGAAGTTGTATGTTTCCTTTCTACTTTCAATCTTGTTCTTTGTATCATTGTGTGTAGCAAATAATGTTCCACCAGAAACCATTTGCAAGGGTACCATAAACCCTACTTATTGTAAAACCGTTCTTGGTAGTCAAAATGGAAACATATATGACTATGGTCGCATTTCTATTCGAAAGTCCTTATCCCAATCCCGTAAGTTTGTGAACTTATTGGACTCATATCTTCAAGGTAGTTCGTCTTTGTCTCAATCCACAATTCGCGCTCTTGAAGATTGTCAATACCTTGCTAACCTAAGTTTTGAATACTTATCAAATACTTATGGCACAACAAATCAATCTAGTAACGTTCTTCCAGCTTCTCAAGCCGAAGATTTTGAAACTTTCCTTAGCGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTCTAAACACCACAGCTTCTGATCAAAGAGTGAAAAATGACTTGTCATTATCTCTCTCTGATGACATAAAGCTTCATAGCGTAACCCTAGCCTTGTTCCTGAAGGGTTGGATGCCCGAGAATAAAATAAGAACATCATGGCCACAAAAAGGGAAACACTTGAGTTTCAAAAATGGTAATTTACCATTGAAGATGTCAAATAAAGCACGCGCTATTTATGATTCTGCTAGACGCCATGGGAGAAAACTACTTCAAACTGATGAAGATAGTATTTTGGTTAGTGATATTGTTGTTGTTAGTCAAGATGGAAGTGGAAACTTTACCACTATCAATGATGCAATAGCTGCTGCCCCAAATAACACAGTTGCAAGTGATGGATACTTCCTCATTTTTATCACAGAAGGTGTGTATGAAGAGTATGTCTCTATTGACAAAAAGAAGAAATACTTAATGATGATTGGAGAAGGAATCAATCAAACAATTATTACAGGCAATCGCAATGTCGCTGATGGTTTCACAACATTCAATTCAGCCACCTTCGGTAAGAAAAATTAATATTTAGACGTATTAAATAGACCACAAACCATAAATTGCTACATATTCACAACTCATTTAGTGACCAAATCATAAAATATTTTTTTTTTGCTGAATCAAGAGCGTAATGACATCAAACCACAAAATAATTTAATAATTTATTTCACAAAATTGTTTTGAATAACGATTGATAATTTTGGTTGGTTTTTAACAACGGATTTTTGGTAGTCCACATTTAATCACACAAACATATTGTTAATCTATACTATGCCATGACTTATGGCATGCATGAAGATACGTTAGTTGTCAACAATTTCACTAACTTGATGGTTCATGTGGATTTGCAGCTGTGGTTGCTCAAGGGTTCGTGGCAGTTAACATAACATTTCGCAACACCGCTGGAGCAGCAAAACATCAAGCAGTTGCACTAAGAAGTGGAGCAGACATGTCTACCTTTTATAGTTGCAGCTTTGAAGGGTATCAAGACACACTATATACACATTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGAACAGTTGACTTCATATTTGGAAATGGTGCAGTTGTTTTGCAAAATTGTAACATCTATCCTCGCCTTCCTTTAAGTGGACAATTTAATCCTATCACAGCTCAAGGTCGAACCGACCCGAATCAAAACACTGGAATTTCTATACAAAATGCAACTATTAAACCAGCAGATGATTTGGCTCCTAAAGTTGGAACTGTTCAAACATACCTAGGGAGACCATGGAAAGAATATTCAAGAACAGTTTATATGCAATCCTTTATGGATAGTTTCATAAACCCTTCTGGTTGGCGTGAATGGAATGGTGATTTTGCATTGAGCACTTTATATTATGCAGAATATGATAATAGAGGACCAGGTTCAAGCACTGCAAATAGAGTAACATGGCCTGGTTATCATGTTATTGGTGCCACTGATGCAGCAAATTTCACAGTGTCTAACTTTGTTAGTGGTGATGATTGGATTCCTCAAACTGGTGTCCCTTACATGAGTGGATTGATATAG
Protein sequence

>MS.gene98992.t1

MAFKNFTFMKLYVSFLLSILFFVSLCVANNVPPETICKGTINPTYCKTVLGSQNGNIYDYGRISIRKSLSQSRKFVNLLDSYLQGSSSLSQSTIRALEDCQYLANLSFEYLSNTYGTTNQSSNVLPASQAEDFETFLSAVLTNQQTCLDGLNTTASDQRVKNDLSLSLSDDIKLHSVTLALFLKGWMPENKIRTSWPQKGKHLSFKNGNLPLKMSNKARAIYDSARRHGRKLLQTDEDSILVSDIVVVSQDGSGNFTTINDAIAAAPNNTVASDGYFLIFITEGVYEEYVSIDKKKKYLMMIGEGINQTIITGNRNVADGFTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNIYPRLPLSGQFNPITAQGRTDPNQNTGISIQNATIKPADDLAPKVGTVQTYLGRPWKEYSRTVYMQSFMDSFINPSGWREWNGDFALSTLYYAEYDNRGPGSSTANRVTWPGYHVIGATDAANFTVSNFVSGDDWIPQTGVPYMSGLI