AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98993

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98993.t1 MTR_1g054880 94.812 559 29 0 1 559 1 559 0.0 1081
MS.gene98993.t1 MTR_1g088020 86.275 561 70 2 1 559 1 556 0.0 986
MS.gene98993.t1 MTR_1g088225 85.740 561 71 3 1 559 1 554 0.0 972
MS.gene98993.t1 MTR_7g108890 73.179 563 147 3 1 559 1 563 0.0 857
MS.gene98993.t1 MTR_0458s0010 73.535 563 101 7 1 559 1 519 0.0 790
MS.gene98993.t1 MTR_7g108875 66.365 553 175 4 16 559 15 565 0.0 763
MS.gene98993.t1 MTR_7g108900 66.855 531 171 4 31 558 32 560 0.0 737
MS.gene98993.t1 MTR_1g083520 50.733 546 237 8 17 558 11 528 0.0 529
MS.gene98993.t1 MTR_0458s0030 91.386 267 23 0 293 559 49 315 0.0 521
MS.gene98993.t1 MTR_0458s0030 60.714 56 17 1 1 56 1 51 5.51e-14 73.6
MS.gene98993.t1 MTR_1g088040 91.386 267 23 0 293 559 49 315 0.0 521
MS.gene98993.t1 MTR_1g088040 60.714 56 17 1 1 56 1 51 5.51e-14 73.6
MS.gene98993.t1 MTR_3g010770 50.642 545 240 9 37 559 39 576 1.31e-179 519
MS.gene98993.t1 MTR_8g042910 50.929 538 245 7 37 558 78 612 2.40e-179 520
MS.gene98993.t1 MTR_7g108905 51.245 482 204 10 83 558 100 556 1.57e-155 456
MS.gene98993.t1 MTR_4g025690 45.989 561 239 16 8 558 7 513 1.95e-144 426
MS.gene98993.t1 MTR_4g025730 47.610 502 209 15 59 558 60 509 1.08e-139 414
MS.gene98993.t1 MTR_1g008140 47.390 479 218 8 96 558 147 607 3.04e-138 414
MS.gene98993.t1 MTR_2g044810 42.226 566 272 12 10 558 7 534 1.88e-134 402
MS.gene98993.t1 MTR_2g044880 46.488 484 206 9 85 558 85 525 3.87e-134 400
MS.gene98993.t1 MTR_7g050980 46.512 473 204 12 96 558 122 555 3.66e-133 399
MS.gene98993.t1 MTR_8g023310 46.735 490 214 12 88 558 128 589 6.56e-133 400
MS.gene98993.t1 MTR_7g112580 45.629 469 217 10 96 558 106 542 7.74e-133 398
MS.gene98993.t1 MTR_4g124520 48.019 429 191 8 132 558 123 521 1.01e-131 394
MS.gene98993.t1 MTR_4g087980 46.055 469 215 8 93 558 83 516 1.08e-131 394
MS.gene98993.t1 MTR_8g042900 45.020 502 241 12 62 558 110 581 4.89e-131 394
MS.gene98993.t1 MTR_4g025670 44.561 478 217 7 86 558 55 489 1.02e-130 390
MS.gene98993.t1 MTR_8g104655 42.727 550 280 11 15 558 21 541 4.06e-128 385
MS.gene98993.t1 MTR_4g087970 45.011 471 215 10 96 558 83 517 4.24e-128 385
MS.gene98993.t1 MTR_8g104645 55.891 331 142 3 230 558 44 372 4.46e-128 379
MS.gene98993.t1 MTR_3g091380 43.253 541 263 13 37 558 82 597 4.58e-128 387
MS.gene98993.t1 MTR_3g010780 42.771 498 256 9 62 558 105 574 6.45e-128 386
MS.gene98993.t1 MTR_7g050950 40.331 543 261 14 36 558 54 553 1.85e-126 382
MS.gene98993.t1 MTR_7g050870 41.296 540 261 14 36 558 54 554 2.63e-126 382
MS.gene98993.t1 MTR_4g035980 40.824 534 270 14 37 558 40 539 6.75e-122 370
MS.gene98993.t1 MTR_3g033690 39.261 568 274 15 12 558 9 526 5.67e-121 367
MS.gene98993.t1 MTR_7g053360 39.298 570 274 16 11 558 8 527 2.13e-120 365
MS.gene98993.t1 MTR_4g124550 42.549 463 251 6 96 558 146 593 1.21e-119 366
MS.gene98993.t1 MTR_3g008640 39.894 564 279 15 11 558 8 527 1.53e-119 363
MS.gene98993.t1 MTR_3g008700 40.185 540 257 14 37 558 36 527 2.95e-119 362
MS.gene98993.t1 MTR_3g008720 39.394 561 286 13 11 558 8 527 2.98e-119 362
MS.gene98993.t1 MTR_1g086190 37.058 537 300 9 36 558 51 563 2.70e-110 340
MS.gene98993.t1 MTR_8g023150 38.447 541 281 16 34 558 78 582 1.42e-108 337
MS.gene98993.t1 MTR_1g086210 36.563 547 306 11 34 558 42 569 2.40e-107 333
MS.gene98993.t1 MTR_1g083510 39.623 477 259 11 96 557 120 582 7.33e-106 330
MS.gene98993.t1 MTR_2g044810 57.540 252 107 0 307 558 214 465 1.12e-105 325
MS.gene98993.t1 MTR_7g112590 36.127 537 316 9 34 557 60 582 6.82e-103 322
MS.gene98993.t1 MTR_2g044660 50.799 313 147 3 246 558 327 632 2.46e-100 317
MS.gene98993.t1 MTR_8g104580 38.364 550 271 15 15 558 13 500 6.52e-100 311
MS.gene98993.t1 MTR_3g095920 34.333 600 304 17 5 557 7 563 2.48e-98 310
MS.gene98993.t1 MTR_0618s0020 60.088 228 90 1 332 558 1 228 2.40e-97 295
MS.gene98993.t1 MTR_7g110560 35.338 532 317 11 34 559 40 550 1.71e-96 305
MS.gene98993.t1 MTR_1g083490 33.640 544 302 9 34 554 64 571 6.08e-96 304
MS.gene98993.t1 MTR_4g005180 33.640 544 302 9 34 554 46 553 2.68e-95 302
MS.gene98993.t1 MTR_4g120280 39.140 442 230 10 130 557 155 571 2.99e-95 302
MS.gene98993.t1 MTR_1g083470 36.069 463 272 6 96 554 124 566 3.36e-95 302
MS.gene98993.t1 MTR_1g083500 36.069 463 272 6 96 554 124 566 3.36e-95 302
MS.gene98993.t1 MTR_4g005170 33.640 544 302 9 34 554 64 571 4.64e-95 303
MS.gene98993.t1 MTR_8g093460 36.190 525 290 13 37 547 47 540 3.29e-94 299
MS.gene98993.t1 MTR_7g110490 37.131 474 278 9 93 558 105 566 6.73e-94 298
MS.gene98993.t1 MTR_7g110510 37.131 474 278 9 93 558 105 566 6.73e-94 298
MS.gene98993.t1 MTR_4g120290 38.549 441 234 10 130 557 155 571 1.32e-93 298
MS.gene98993.t1 MTR_7g110440 35.881 471 290 6 96 558 108 574 1.19e-91 293
MS.gene98993.t1 MTR_2g436040 32.979 564 324 11 8 554 16 542 8.61e-91 291
MS.gene98993.t1 MTR_5g083620 41.243 354 174 8 230 558 12 356 1.22e-84 267
MS.gene98993.t1 MTR_2g436050 33.333 540 311 13 34 557 57 563 2.19e-83 271
MS.gene98993.t1 MTR_8g088610 40.979 327 183 5 230 554 54 372 3.44e-82 261
MS.gene98993.t1 MTR_7g110420 33.673 490 279 10 96 558 108 578 8.88e-77 254
MS.gene98993.t1 MTR_7g107180 42.902 317 161 8 246 558 7 307 1.23e-74 239
MS.gene98993.t1 MTR_2g105560 41.009 317 165 8 246 558 41 339 8.76e-74 238
MS.gene98993.t1 MTR_7g110430 32.773 476 264 10 96 558 108 540 1.39e-71 239
MS.gene98993.t1 MTR_7g111560 30.511 567 331 16 13 558 32 556 5.19e-70 235
MS.gene98993.t1 MTR_6g024165 36.474 329 173 10 231 547 30 334 9.88e-55 188
MS.gene98993.t1 MTR_1g086540 33.623 345 196 9 214 547 22 344 3.04e-54 187
MS.gene98993.t1 MTR_6g088810 36.066 305 167 6 254 547 90 377 6.82e-52 182
MS.gene98993.t1 MTR_8g102380 35.987 314 171 7 247 547 81 377 1.12e-51 181
MS.gene98993.t1 MTR_6g012800 33.642 324 180 9 245 556 5 305 2.29e-51 179
MS.gene98993.t1 MTR_7g092780 33.974 312 182 6 246 547 90 387 9.88e-49 174
MS.gene98993.t1 MTR_7g011530 33.677 291 169 5 241 521 1 277 1.51e-47 168
MS.gene98993.t1 MTR_6g042660 33.910 289 165 6 238 521 29 296 1.34e-46 166
MS.gene98993.t1 MTR_2g039530 37.987 308 152 11 230 526 40 319 5.30e-45 162
MS.gene98993.t1 MTR_5g083590 30.159 315 167 5 246 559 7 269 1.08e-44 159
MS.gene98993.t1 MTR_7g102600 30.571 350 217 6 210 547 58 393 4.48e-44 161
MS.gene98993.t1 MTR_4g124740 32.268 313 176 8 245 547 53 339 1.72e-43 158
MS.gene98993.t1 MTR_6g042690 32.915 319 184 9 238 547 31 328 4.35e-43 157
MS.gene98993.t1 MTR_2g033970 31.731 312 184 8 246 548 56 347 1.72e-42 155
MS.gene98993.t1 MTR_5g095490 33.117 308 177 7 252 547 67 357 2.44e-42 155
MS.gene98993.t1 MTR_8g102380 37.023 262 136 7 247 495 81 326 8.58e-42 153
MS.gene98993.t1 MTR_5g012600 31.132 318 190 7 245 550 62 362 1.18e-41 154
MS.gene98993.t1 MTR_1g033050 35.211 284 161 5 245 521 17 284 1.57e-41 152
MS.gene98993.t1 MTR_5g093970 32.573 307 190 6 242 547 39 329 7.27e-40 148
MS.gene98993.t1 MTR_5g088300 32.573 307 183 7 242 547 33 316 5.71e-38 142
MS.gene98993.t1 MTR_2g436600 30.671 313 177 11 246 548 55 337 4.47e-37 140
MS.gene98993.t1 MTR_5g088290 30.293 307 191 6 242 547 44 328 3.84e-35 135
MS.gene98993.t1 MTR_4g051810 30.097 309 195 6 241 549 32 319 7.08e-34 131
MS.gene98993.t1 MTR_4g074290 30.671 313 190 8 243 547 68 361 4.60e-33 130
MS.gene98993.t1 MTR_2g073390 31.410 312 185 10 245 547 70 361 8.62e-33 129
MS.gene98993.t1 MTR_8g036225 30.599 317 184 8 245 549 32 324 1.60e-32 127
MS.gene98993.t1 MTR_5g088280 30.065 306 192 6 242 547 35 318 2.62e-32 127
MS.gene98993.t1 MTR_0009s0350 33.684 285 166 8 243 520 68 336 4.21e-32 127
MS.gene98993.t1 MTR_0009s0340 33.684 285 166 8 243 520 68 336 4.21e-32 127
MS.gene98993.t1 MTR_6g025590 36.066 183 98 6 231 403 38 211 1.43e-24 102
MS.gene98993.t1 MTR_0408s0030 35.878 131 70 4 418 547 31 148 2.72e-18 82.4
MS.gene98993.t1 MTR_2g436070 26.780 295 178 11 34 320 57 321 4.68e-16 80.5
MS.gene98993.t1 MTR_6g024200 29.651 172 100 4 377 547 125 276 1.26e-15 77.8
MS.gene98993.t1 MTR_7g102580 46.512 86 36 2 323 403 73 153 1.37e-15 74.7
MS.gene98993.t1 MTR_4g130790 29.167 192 124 5 249 432 25 212 4.89e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98993.t1 AT1G02810 60.900 578 195 9 8 559 6 578 0.0 699
MS.gene98993.t1 AT4G02330 60.595 571 203 11 9 559 4 572 0.0 692
MS.gene98993.t1 AT2G47550 62.082 538 192 7 27 559 29 559 0.0 660
MS.gene98993.t1 AT3G10720 49.351 539 252 9 37 559 83 616 4.92e-172 501
MS.gene98993.t1 AT5G04970 46.875 544 258 9 37 559 88 621 3.27e-165 484
MS.gene98993.t1 AT2G45220 43.238 562 251 14 13 558 2 511 5.60e-140 415
MS.gene98993.t1 AT2G26440 43.045 532 272 10 35 558 39 547 4.05e-136 406
MS.gene98993.t1 AT3G60730 46.313 434 217 7 131 558 96 519 1.72e-132 396
MS.gene98993.t1 AT5G51490 44.511 501 230 9 63 558 79 536 4.05e-131 393
MS.gene98993.t1 AT3G43270 47.122 469 221 9 96 559 80 526 7.66e-131 392
MS.gene98993.t1 AT1G11580 39.451 583 288 12 1 558 15 557 2.18e-130 392
MS.gene98993.t1 AT4G33220 47.046 474 222 10 96 558 68 523 5.43e-130 390
MS.gene98993.t1 AT1G11580 39.451 583 288 12 1 558 36 578 6.15e-130 392
MS.gene98993.t1 AT3G05620 43.841 479 212 7 96 558 104 541 1.70e-129 389
MS.gene98993.t1 AT1G53830 43.017 537 274 11 34 554 63 583 1.06e-127 386
MS.gene98993.t1 AT1G23200 40.657 578 277 17 11 558 13 554 8.65e-126 380
MS.gene98993.t1 AT5G53370 42.644 537 263 13 37 558 79 585 2.13e-125 380
MS.gene98993.t1 AT5G53370 42.644 537 263 13 37 558 115 621 5.03e-125 380
MS.gene98993.t1 AT3G49220 46.560 436 209 8 128 558 180 596 2.28e-124 378
MS.gene98993.t1 AT4G33220 55.193 337 143 3 223 558 73 402 3.04e-124 371
MS.gene98993.t1 AT3G49220 46.560 436 209 8 128 558 225 641 5.53e-124 379
MS.gene98993.t1 AT3G14310 45.567 485 224 11 96 558 126 592 7.41e-124 377
MS.gene98993.t1 AT3G10720 63.462 260 95 0 300 559 1 260 2.73e-123 363
MS.gene98993.t1 AT5G04960 39.332 539 274 13 30 556 65 562 6.38e-123 373
MS.gene98993.t1 AT3G05610 40.977 471 251 4 93 559 119 566 1.72e-121 373
MS.gene98993.t1 AT5G51500 46.404 431 199 9 132 558 138 540 6.10e-120 365
MS.gene98993.t1 AT3G10710 39.587 533 280 11 30 558 67 561 1.79e-119 364
MS.gene98993.t1 AT4G02300 40.868 553 279 13 16 558 18 532 5.90e-119 362
MS.gene98993.t1 AT2G26450 38.246 536 286 12 34 558 110 611 1.17e-116 358
MS.gene98993.t1 AT4G02320 42.566 491 235 11 77 554 58 514 1.62e-116 355
MS.gene98993.t1 AT4G00190 40.684 526 251 15 36 558 7 474 5.94e-115 350
MS.gene98993.t1 AT1G53840 40.688 494 253 12 75 552 112 581 9.04e-115 353
MS.gene98993.t1 AT4G33230 38.462 533 298 10 34 558 96 606 2.42e-114 352
MS.gene98993.t1 AT2G43050 40.779 488 239 8 78 559 74 517 1.51e-113 347
MS.gene98993.t1 AT5G27870 39.362 470 250 6 96 558 121 562 6.71e-113 352
MS.gene98993.t1 AT3G59010 43.953 430 210 7 131 559 130 529 3.33e-110 339
MS.gene98993.t1 AT5G49180 40.756 476 263 6 83 555 108 567 2.58e-108 336
MS.gene98993.t1 AT4G03930 42.424 429 216 6 131 558 126 524 4.10e-104 323
MS.gene98993.t1 AT3G47400 49.851 335 162 4 227 558 263 594 5.20e-104 325
MS.gene98993.t1 AT3G27980 42.019 426 212 6 134 558 106 497 8.24e-103 319
MS.gene98993.t1 AT1G11590 41.958 429 218 6 131 558 126 524 2.53e-101 316
MS.gene98993.t1 AT3G14300 40.426 470 244 11 96 555 525 968 3.20e-101 327
MS.gene98993.t1 AT3G06830 40.492 447 215 8 131 556 150 566 2.31e-100 315
MS.gene98993.t1 AT5G20860 37.051 529 264 15 51 558 58 538 1.15e-98 310
MS.gene98993.t1 AT4G15980 45.122 328 176 2 228 554 374 698 2.47e-86 282
MS.gene98993.t1 AT4G15980 45.122 328 176 2 228 554 384 708 4.05e-86 281
MS.gene98993.t1 AT5G64640 36.555 476 242 13 103 551 160 602 5.88e-86 278
MS.gene98993.t1 AT5G09760 46.519 316 144 8 246 546 267 572 9.44e-86 277
MS.gene98993.t1 AT5G09760 46.519 316 144 8 246 546 241 546 9.64e-86 276
MS.gene98993.t1 AT1G11370 48.837 258 129 1 232 489 32 286 5.13e-83 261
MS.gene98993.t1 AT2G47030 43.810 315 170 4 247 558 278 588 3.91e-78 258
MS.gene98993.t1 AT5G20860 32.865 569 273 17 9 545 6 497 6.00e-78 255
MS.gene98993.t1 AT2G47040 30.872 596 350 13 11 558 14 595 3.21e-76 253
MS.gene98993.t1 AT3G62170 42.857 315 173 4 247 558 278 588 2.35e-74 248
MS.gene98993.t1 AT5G19730 35.032 314 176 6 245 547 85 381 4.42e-52 182
MS.gene98993.t1 AT2G36710 32.951 349 199 7 211 552 70 390 5.05e-51 181
MS.gene98993.t1 AT1G05310 34.451 328 180 7 233 547 83 388 3.96e-50 177
MS.gene98993.t1 AT3G29090 33.837 331 178 11 240 555 1 305 4.17e-49 172
MS.gene98993.t1 AT2G36700 32.792 308 187 5 245 547 41 333 5.82e-49 173
MS.gene98993.t1 AT2G21610 33.003 303 183 6 245 547 50 332 2.16e-48 172
MS.gene98993.t1 AT2G21610 33.003 303 183 6 245 547 55 337 2.42e-48 172
MS.gene98993.t1 AT5G07430 33.544 316 187 7 237 547 58 355 8.28e-46 165
MS.gene98993.t1 AT5G18990 36.426 291 150 7 246 521 29 299 3.35e-45 162
MS.gene98993.t1 AT3G17060 29.375 320 197 7 238 548 38 337 1.91e-44 161
MS.gene98993.t1 AT3G24130 32.609 322 182 7 246 553 34 334 8.46e-44 159
MS.gene98993.t1 AT5G47500 31.746 315 186 7 245 547 60 357 3.35e-43 158
MS.gene98993.t1 AT5G07420 32.686 309 183 8 245 547 66 355 1.65e-41 153
MS.gene98993.t1 AT5G55590 32.075 318 187 7 242 547 78 378 1.52e-39 148
MS.gene98993.t1 AT2G19150 28.875 329 208 6 234 554 29 339 3.04e-39 147
MS.gene98993.t1 AT5G26810 31.975 319 189 9 242 547 30 333 2.73e-37 141
MS.gene98993.t1 AT5G55590 33.840 263 147 6 242 492 78 325 4.31e-37 140
MS.gene98993.t1 AT2G47280 31.056 322 188 8 246 553 35 336 6.04e-37 140
MS.gene98993.t1 AT1G44980 43.716 183 99 2 230 412 63 241 9.84e-37 137
MS.gene98993.t1 AT1G69940 29.773 309 192 8 245 547 66 355 3.84e-36 139
MS.gene98993.t1 AT5G61680 31.613 310 186 9 245 547 68 358 4.08e-36 139
MS.gene98993.t1 AT5G07410 29.773 309 192 8 245 547 66 355 6.57e-36 138
MS.gene98993.t1 AT2G19150 30.970 268 161 5 234 493 29 280 3.23e-34 131
MS.gene98993.t1 AT3G49220 30.097 206 121 7 128 329 225 411 2.33e-16 82.0

Find 0 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATACTTAATGATGAT+TGG + 11361:6806-6825 MS.gene98993:CDS 20.0%
!! AGAATAAAATAAGAACATCA+TGG + 11361:6486-6505 MS.gene98993:CDS 20.0%
!! ATCAATCAAACAATTATTAC+AGG + 11361:6836-6855 MS.gene98993:CDS 20.0%
!! GAATACTTATCAAATACTTA+TGG + 11361:6245-6264 MS.gene98993:CDS 20.0%
!! TTGATAAGTATTCAAAACTT+AGG - 11361:6238-6257 MS.gene98993:intergenic 20.0%
!!! ATATTAATTTTTCTTACCGA+AGG - 11361:6906-6925 MS.gene98993:intergenic 20.0%
!!! TGAATAACGATTGATAATTT+TGG + 11361:7079-7098 MS.gene98993:intron 20.0%
!!! TGATGTTCTTATTTTATTCT+CGG - 11361:6486-6505 MS.gene98993:intergenic 20.0%
! AAACACTTGAGTTTCAAAAA+TGG + 11361:6521-6540 MS.gene98993:CDS 25.0%
! AAGGAAAGTTTCAAAATCTT+CGG - 11361:6312-6331 MS.gene98993:intergenic 25.0%
! AATGGAAACATATATGACTA+TGG + 11361:6080-6099 MS.gene98993:CDS 25.0%
! AGTTTATATGCAATCCTTTA+TGG + 11361:7679-7698 MS.gene98993:CDS 25.0%
! GTTTATGAAACTATCCATAA+AGG - 11361:7696-7715 MS.gene98993:intergenic 25.0%
! TATAGAGAATGTGATATCTA+TGG + 11361:7419-7438 MS.gene98993:CDS 25.0%
! TATGCAGAATATGATAATAG+AGG + 11361:7767-7786 MS.gene98993:CDS 25.0%
! TATGTTTGTGTGATTAAATG+TGG - 11361:7134-7153 MS.gene98993:intergenic 25.0%
! TGTGAATATGTAGCAATTTA+TGG - 11361:6954-6973 MS.gene98993:intergenic 25.0%
! TTTACAATAAGTAGGGTTTA+TGG - 11361:6042-6061 MS.gene98993:intergenic 25.0%
!! AACTGATGAAGATAGTATTT+TGG + 11361:6622-6641 MS.gene98993:CDS 25.0%
!!! GATGTTCTTATTTTATTCTC+GGG - 11361:6485-6504 MS.gene98993:intergenic 25.0%
!!! TAACGATTGATAATTTTGGT+TGG + 11361:7083-7102 MS.gene98993:intron 25.0%
!!! TTTTGGTTGGTTTTTAACAA+CGG + 11361:7096-7115 MS.gene98993:intron 25.0%
ACTTATTGTAAAACCGTTCT+TGG + 11361:6050-6069 MS.gene98993:CDS 30.0%
ATATCAATCCACTCATGTAA+GGG - 11361:7919-7938 MS.gene98993:intergenic 30.0%
ATGTAGCAATTTATGGTTTG+TGG - 11361:6947-6966 MS.gene98993:intergenic 30.0%
ATTCAAAACTTAGGTTAGCA+AGG - 11361:6229-6248 MS.gene98993:intergenic 30.0%
CAACAATTTCACTAACTTGA+TGG + 11361:7209-7228 MS.gene98993:intron 30.0%
CAATAAGTTCACAAACTTAC+GGG - 11361:6138-6157 MS.gene98993:intergenic 30.0%
CACTATATACACATTCTTTG+AGG + 11361:7390-7409 MS.gene98993:CDS 30.0%
CCAATAAGTTCACAAACTTA+CGG - 11361:6139-6158 MS.gene98993:intergenic 30.0%
GAACAAGATTGAAAGTAGAA+AGG - 11361:5964-5983 MS.gene98993:intergenic 30.0%
GGAAACATACAACTTCATAA+AGG - 11361:5943-5962 MS.gene98993:intergenic 30.0%
GGATTAAATTGTCCACTTAA+AGG - 11361:7512-7531 MS.gene98993:intergenic 30.0%
GTTCTTGAATATTCTTTCCA+TGG - 11361:7659-7678 MS.gene98993:intergenic 30.0%
TAAATTGTCCACTTAAAGGA+AGG - 11361:7508-7527 MS.gene98993:intergenic 30.0%
TACTTAATGATGATTGGAGA+AGG + 11361:6812-6831 MS.gene98993:CDS 30.0%
TATATCAATCCACTCATGTA+AGG - 11361:7920-7939 MS.gene98993:intergenic 30.0%
TATTAAACCAGCAGATGATT+TGG + 11361:7595-7614 MS.gene98993:CDS 30.0%
TTATTGGACTCATATCTTCA+AGG + 11361:6152-6171 MS.gene98993:CDS 30.0%
TTCAAAGCTGCAACTATAAA+AGG - 11361:7357-7376 MS.gene98993:intergenic 30.0%
! AGAACGGTTTTACAATAAGT+AGG - 11361:6050-6069 MS.gene98993:intergenic 30.0%
! ATTGTTGTTGTTAGTCAAGA+TGG + 11361:6653-6672 MS.gene98993:CDS 30.0%
! GAACGGTTTTACAATAAGTA+GGG - 11361:6049-6068 MS.gene98993:intergenic 30.0%
! GTTGACTTCATATTTGGAAA+TGG + 11361:7446-7465 MS.gene98993:CDS 30.0%
! TGTTTGTTGGTTAGTCAAAA+CGG - 11361:6339-6358 MS.gene98993:intergenic 30.0%
! TTAATTTTTCTTACCGAAGG+TGG - 11361:6903-6922 MS.gene98993:intergenic 30.0%
!! GCTTTATTTGACATCTTCAA+TGG - 11361:6554-6573 MS.gene98993:intergenic 30.0%
!! GGTTTTTAACAACGGATTTT+TGG + 11361:7104-7123 MS.gene98993:intron 30.0%
!! TTCCTCATTTTTATCACAGA+AGG + 11361:6749-6768 MS.gene98993:CDS 30.0%
!! TTTATAGTTGCAGCTTTGAA+GGG + 11361:7357-7376 MS.gene98993:CDS 30.0%
!! TTTTATAGTTGCAGCTTTGA+AGG + 11361:7356-7375 MS.gene98993:CDS 30.0%
!!! AAATTCCAGTGTTTTGATTC+GGG - 11361:7559-7578 MS.gene98993:intergenic 30.0%
!!! GAAATTCCAGTGTTTTGATT+CGG - 11361:7560-7579 MS.gene98993:intergenic 30.0%
AACCAACAAACATGTTTGGA+TGG + 11361:6347-6366 MS.gene98993:CDS 35.0%
AATAACACAGTTGCAAGTGA+TGG + 11361:6722-6741 MS.gene98993:CDS 35.0%
ACAGTGTCTAACTTTGTTAG+TGG + 11361:7866-7885 MS.gene98993:CDS 35.0%
AGCTATTGCATCATTGATAG+TGG - 11361:6693-6712 MS.gene98993:intergenic 35.0%
CACCTTCTGTGATAAAAATG+AGG - 11361:6754-6773 MS.gene98993:intergenic 35.0%
CCGTAAGTTTGTGAACTTAT+TGG + 11361:6136-6155 MS.gene98993:CDS 35.0%
CTATACTATGCCATGACTTA+TGG + 11361:7162-7181 MS.gene98993:intron 35.0%
GAACTGTTCAAACATACCTA+GGG + 11361:7630-7649 MS.gene98993:CDS 35.0%
GAATATGATAATAGAGGACC+AGG + 11361:7773-7792 MS.gene98993:CDS 35.0%
GACTAACCAACAAACATGTT+TGG + 11361:6343-6362 MS.gene98993:CDS 35.0%
GATAGTTTCATAAACCCTTC+TGG + 11361:7701-7720 MS.gene98993:CDS 35.0%
GTTTGAACAGTTCCAACTTT+AGG - 11361:7623-7642 MS.gene98993:intergenic 35.0%
TTTAATCCTATCACAGCTCA+AGG + 11361:7524-7543 MS.gene98993:CDS 35.0%
! ACTTTGTTAGTGGTGATGAT+TGG + 11361:7876-7895 MS.gene98993:CDS 35.0%
! GGAACAGTTGACTTCATATT+TGG + 11361:7440-7459 MS.gene98993:CDS 35.0%
! TCACTTGCAACTGTGTTATT+TGG - 11361:6722-6741 MS.gene98993:intergenic 35.0%
!! ACTTGCAACTGTGTTATTTG+GGG - 11361:6720-6739 MS.gene98993:intergenic 35.0%
!! CACTTGCAACTGTGTTATTT+GGG - 11361:6721-6740 MS.gene98993:intergenic 35.0%
!! TTTGAAGTAGTTTTCTCCCA+TGG - 11361:6604-6623 MS.gene98993:intergenic 35.0%
!!! TCCATTTTGACTACCAAGAA+CGG - 11361:6066-6085 MS.gene98993:intergenic 35.0%
AAACTTACGGGATTGGGATA+AGG - 11361:6126-6145 MS.gene98993:intergenic 40.0%
ACATTCAATTCAGCCACCTT+CGG + 11361:6887-6906 MS.gene98993:CDS 40.0%
AGAACATCATGGCCACAAAA+AGG + 11361:6497-6516 MS.gene98993:CDS 40.0%
AGTTCACAAACTTACGGGAT+TGG - 11361:6133-6152 MS.gene98993:intergenic 40.0%
GAACATCATGGCCACAAAAA+GGG + 11361:6498-6517 MS.gene98993:CDS 40.0%
GACCATCCAAACATGTTTGT+TGG - 11361:6352-6371 MS.gene98993:intergenic 40.0%
GATGATTGGATTCCTCAAAC+TGG + 11361:7890-7909 MS.gene98993:CDS 40.0%
GCACCAATAACATGATAACC+AGG - 11361:7827-7846 MS.gene98993:intergenic 40.0%
GCACTGCAAATAGAGTAACA+TGG + 11361:7801-7820 MS.gene98993:CDS 40.0%
GGAACTGTTCAAACATACCT+AGG + 11361:7629-7648 MS.gene98993:CDS 40.0%
GTTCACAAACTTACGGGATT+GGG - 11361:6132-6151 MS.gene98993:intergenic 40.0%
GTTGTTAGTCAAGATGGAAG+TGG + 11361:6659-6678 MS.gene98993:CDS 40.0%
GTTTATGGTACCCTTGCAAA+TGG - 11361:6027-6046 MS.gene98993:intergenic 40.0%
GTTTCATAAACCCTTCTGGT+TGG + 11361:7705-7724 MS.gene98993:CDS 40.0%
TGGCCTGGTTATCATGTTAT+TGG + 11361:7821-7840 MS.gene98993:CDS 40.0%
TTCATGCATGCCATAAGTCA+TGG - 11361:7175-7194 MS.gene98993:intergenic 40.0%
! ACCGTTCTTGGTAGTCAAAA+TGG + 11361:6062-6081 MS.gene98993:CDS 40.0%
! CACTAACTTGATGGTTCATG+TGG + 11361:7218-7237 MS.gene98993:intron 40.0%
! CTCAAGTGTTTCCCTTTTTG+TGG - 11361:6512-6531 MS.gene98993:intergenic 40.0%
! GATGATTTGGCTCCTAAAGT+TGG + 11361:7608-7627 MS.gene98993:CDS 40.0%
!! TGTGAAATTTGCTGCATCAG+TGG - 11361:7849-7868 MS.gene98993:intergenic 40.0%
AAACATACCTAGGGAGACCA+TGG + 11361:7639-7658 MS.gene98993:CDS 45.0%
ATAACATTTCGCAACACCGC+TGG + 11361:7281-7300 MS.gene98993:CDS 45.0%
ATGATTCTGCTAGACGCCAT+GGG + 11361:6585-6604 MS.gene98993:CDS 45.0%
ATGTAAGGGACACCAGTTTG+AGG - 11361:7905-7924 MS.gene98993:intergenic 45.0%
ATTCTTTCCATGGTCTCCCT+AGG - 11361:7649-7668 MS.gene98993:intergenic 45.0%
CAAGCAGTTGCACTAAGAAG+TGG + 11361:7317-7336 MS.gene98993:CDS 45.0%
CACTCTTTGATCAGAAGCTG+TGG - 11361:6381-6400 MS.gene98993:intergenic 45.0%
CCACCAGAAACCATTTGCAA+GGG + 11361:6014-6033 MS.gene98993:CDS 45.0%
CTATTTGCAGTGCTTGAACC+TGG - 11361:7794-7813 MS.gene98993:intergenic 45.0%
GCAAATAGAGTAACATGGCC+TGG + 11361:7806-7825 MS.gene98993:CDS 45.0%
GTACCCTTGCAAATGGTTTC+TGG - 11361:6020-6039 MS.gene98993:intergenic 45.0%
TATCCTCGCCTTCCTTTAAG+TGG + 11361:7497-7516 MS.gene98993:CDS 45.0%
TATGATTCTGCTAGACGCCA+TGG + 11361:6584-6603 MS.gene98993:CDS 45.0%
TCCACCAGAAACCATTTGCA+AGG + 11361:6013-6032 MS.gene98993:CDS 45.0%
TTAGGAGCCAAATCATCTGC+TGG - 11361:7605-7624 MS.gene98993:intergenic 45.0%
TTCATGTGGATTTGCAGCTG+TGG + 11361:7232-7251 MS.gene98993:intron 45.0%
! AAATCTTCGGCTTGAGAAGC+TGG - 11361:6299-6318 MS.gene98993:intergenic 45.0%
! ATCTTCAAGAGCGCGAATTG+TGG - 11361:6198-6217 MS.gene98993:intergenic 45.0%
! TTGATGTTTTGCTGCTCCAG+CGG - 11361:7300-7319 MS.gene98993:intergenic 45.0%
!!! TCCAGTGTTTTGATTCGGGT+CGG - 11361:7555-7574 MS.gene98993:intergenic 45.0%
!!! AAAAAAAATATTTTATGATT+TGG - 11361:6990-7009 MS.gene98993:intergenic 5.0%
!!! TAAATTATTAAATTATTTTG+TGG - 11361:7043-7062 MS.gene98993:intergenic 5.0%
AACCCTTCAGGAACAAGGCT+AGG - 11361:6457-6476 MS.gene98993:intergenic 50.0%
ACCCTTCAGGAACAAGGCTA+GGG - 11361:6456-6475 MS.gene98993:intergenic 50.0%
ACCGACCCGAATCAAAACAC+TGG + 11361:7551-7570 MS.gene98993:CDS 50.0%
ACTGGTGTCCCTTACATGAG+TGG + 11361:7908-7927 MS.gene98993:CDS 50.0%
CATCCAACCCTTCAGGAACA+AGG - 11361:6462-6481 MS.gene98993:intergenic 50.0%
GTTCGACCTTGAGCTGTGAT+AGG - 11361:7533-7552 MS.gene98993:intergenic 50.0%
TCCATTCACGCCAACCAGAA+GGG - 11361:7718-7737 MS.gene98993:intergenic 50.0%
TCTGGTTGGCGTGAATGGAA+TGG + 11361:7719-7738 MS.gene98993:CDS 50.0%
TGTCCACTTAAAGGAAGGCG+AGG - 11361:7503-7522 MS.gene98993:intergenic 50.0%
TTCCATTCACGCCAACCAGA+AGG - 11361:7719-7738 MS.gene98993:intergenic 50.0%
TTGCAGCTGTGGTTGCTCAA+GGG + 11361:7243-7262 MS.gene98993:intron 50.0%
TTTGCAGCTGTGGTTGCTCA+AGG + 11361:7242-7261 MS.gene98993:intron 50.0%
! CCCTTGCAAATGGTTTCTGG+TGG - 11361:6017-6036 MS.gene98993:intergenic 50.0%
! GGTTAGTCAAAACGGCGCTA+AGG - 11361:6331-6350 MS.gene98993:intergenic 50.0%
!! AACCCTAGCCTTGTTCCTGA+AGG + 11361:6451-6470 MS.gene98993:CDS 50.0%
!! ACCCTAGCCTTGTTCCTGAA+GGG + 11361:6452-6471 MS.gene98993:CDS 50.0%
!! TAGCCTTGTTCCTGAAGGGT+TGG + 11361:6456-6475 MS.gene98993:CDS 50.0%
GGCAATCGCAATGTCGCTGA+TGG + 11361:6857-6876 MS.gene98993:CDS 55.0%
TGTGGTTGCTCAAGGGTTCG+TGG + 11361:7250-7269 MS.gene98993:CDS 55.0%
! ACCCTTCTGGTTGGCGTGAA+TGG + 11361:7714-7733 MS.gene98993:CDS 55.0%
TCTCGGGCATCCAACCCTTC+AGG - 11361:6469-6488 MS.gene98993:intergenic 60.0%


Chromosome Type Strat End Strand Name
11361 gene 5921 7940 5921 ID=MS.gene98993
11361 mRNA 5921 7940 5921 ID=MS.gene98993.t1;Parent=MS.gene98993
11361 exon 5921 6908 5921 ID=MS.gene98993.t1.exon1;Parent=MS.gene98993.t1
11361 CDS 5921 6908 5921 ID=cds.MS.gene98993.t1;Parent=MS.gene98993.t1
11361 exon 7249 7940 7249 ID=MS.gene98993.t1.exon2;Parent=MS.gene98993.t1
11361 CDS 7249 7940 7249 ID=cds.MS.gene98993.t1;Parent=MS.gene98993.t1
Gene Sequence

>MS.gene98993

ATGGCTTTCAAAAACTTCACCTTTATGAAGTTGTATGTTTCCTTTCTACTTTCAATCTTGTTCTTTGTATCATTGTGTGTAGCAAATAATGTTCCACCAGAAACCATTTGCAAGGGTACCATAAACCCTACTTATTGTAAAACCGTTCTTGGTAGTCAAAATGGAAACATATATGACTATGGTCGCATTTCTATTCGAAAGTCCTTATCCCAATCCCGTAAGTTTGTGAACTTATTGGACTCATATCTTCAAGGTAGTTCGTCTTTGTCTCAATCCACAATTCGCGCTCTTGAAGATTGTCAATACCTTGCTAACCTAAGTTTTGAATACTTATCAAATACTTATGGCACAACAAATCAATCTAGTAACGTTCTTCCAGCTTCTCAAGCCGAAGATTTTGAAACTTTCCTTAGCGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTCTAAACACCACAGCTTCTGATCAAAGAGTGAAAAATGACTTGTCATTATCTCTCTCTGATGACATAAAGCTTCATAGCGTAACCCTAGCCTTGTTCCTGAAGGGTTGGATGCCCGAGAATAAAATAAGAACATCATGGCCACAAAAAGGGAAACACTTGAGTTTCAAAAATGGTAATTTACCATTGAAGATGTCAAATAAAGCACGCGCTATTTATGATTCTGCTAGACGCCATGGGAGAAAACTACTTCAAACTGATGAAGATAGTATTTTGGTTAGTGATATTGTTGTTGTTAGTCAAGATGGAAGTGGAAACTTTACCACTATCAATGATGCAATAGCTGCTGCCCCAAATAACACAGTTGCAAGTGATGGATACTTCCTCATTTTTATCACAGAAGGTGTGTATGAAGAGTATGTCTCTATTGACAAAAAGAAGAAATACTTAATGATGATTGGAGAAGGAATCAATCAAACAATTATTACAGGCAATCGCAATGTCGCTGATGGTTTCACAACATTCAATTCAGCCACCTTCGGTAAGAAAAATTAATATTTAGACGTATTAAATAGACCACAAACCATAAATTGCTACATATTCACAACTCATTTAGTGACCAAATCATAAAATATTTTTTTTTTGCTGAATCAAGAGCGTAATGACATCAAACCACAAAATAATTTAATAATTTATTTCACAAAATTGTTTTGAATAACGATTGATAATTTTGGTTGGTTTTTAACAACGGATTTTTGGTAGTCCACATTTAATCACACAAACATATTGTTAATCTATACTATGCCATGACTTATGGCATGCATGAAGATACGTTAGTTGTCAACAATTTCACTAACTTGATGGTTCATGTGGATTTGCAGCTGTGGTTGCTCAAGGGTTCGTGGCAGTTAACATAACATTTCGCAACACCGCTGGAGCAGCAAAACATCAAGCAGTTGCACTAAGAAGTGGAGCAGACATGTCTACCTTTTATAGTTGCAGCTTTGAAGGGTATCAAGACACACTATATACACATTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGAACAGTTGACTTCATATTTGGAAATGGTGCAGTTGTTTTGCAAAATTGTAACATCTATCCTCGCCTTCCTTTAAGTGGACAATTTAATCCTATCACAGCTCAAGGTCGAACCGACCCGAATCAAAACACTGGAATTTCTATACAAAATGCAACTATTAAACCAGCAGATGATTTGGCTCCTAAAGTTGGAACTGTTCAAACATACCTAGGGAGACCATGGAAAGAATATTCAAGAACAGTTTATATGCAATCCTTTATGGATAGTTTCATAAACCCTTCTGGTTGGCGTGAATGGAATGGTGATTTTGCATTGAGCACTTTATATTATGCAGAATATGATAATAGAGGACCAGGTTCAAGCACTGCAAATAGAGTAACATGGCCTGGTTATCATGTTATTGGTGCCACTGATGCAGCAAATTTCACAGTGTCTAACTTTGTTAGTGGTGATGATTGGATTCCTCAAACTGGTGTCCCTTACATGAGTGGATTGATATAG
Protein sequence

>MS.gene98993.t1

MAFKNFTFMKLYVSFLLSILFFVSLCVANNVPPETICKGTINPTYCKTVLGSQNGNIYDYGRISIRKSLSQSRKFVNLLDSYLQGSSSLSQSTIRALEDCQYLANLSFEYLSNTYGTTNQSSNVLPASQAEDFETFLSAVLTNQQTCLDGLNTTASDQRVKNDLSLSLSDDIKLHSVTLALFLKGWMPENKIRTSWPQKGKHLSFKNGNLPLKMSNKARAIYDSARRHGRKLLQTDEDSILVSDIVVVSQDGSGNFTTINDAIAAAPNNTVASDGYFLIFITEGVYEEYVSIDKKKKYLMMIGEGINQTIITGNRNVADGFTTFNSATFAVVAQGFVAVNITFRNTAGAAKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNGAVVLQNCNIYPRLPLSGQFNPITAQGRTDPNQNTGISIQNATIKPADDLAPKVGTVQTYLGRPWKEYSRTVYMQSFMDSFINPSGWREWNGDFALSTLYYAEYDNRGPGSSTANRVTWPGYHVIGATDAANFTVSNFVSGDDWIPQTGVPYMSGLI