AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005611.t1 MTR_1g088720 96.300 946 17 2 1 941 1 933 0.0 1867
MS.gene005611.t1 MTR_3g005810 32.492 317 202 8 8 319 7 316 7.95e-36 146
MS.gene005611.t1 MTR_5g024250 24.599 374 247 9 8 353 4 370 1.08e-23 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005611.t1 AT4G02460 56.503 938 333 12 7 926 16 896 0.0 994
MS.gene005611.t1 AT4G02460 54.556 845 309 13 100 926 11 798 0.0 840
MS.gene005611.t1 AT4G02460 54.534 816 298 12 7 804 16 776 0.0 798
MS.gene005611.t1 AT4G02460 51.729 723 276 12 100 804 11 678 0.0 644
MS.gene005611.t1 AT4G09140 32.722 327 202 9 1 319 22 338 2.92e-37 150
MS.gene005611.t1 AT4G35520 27.778 378 233 10 6 358 2 364 2.17e-27 120
MS.gene005611.t1 AT4G35520 28.054 221 120 7 734 934 920 1121 7.37e-11 67.0
MS.gene005611.t1 AT4G35520 28.161 348 211 9 6 328 2 335 2.88e-27 120
MS.gene005611.t1 AT4G35520 28.054 221 120 7 734 934 947 1148 8.50e-11 66.6
MS.gene005611.t1 AT4G35520 27.134 328 203 8 6 328 2 298 7.10e-23 105
MS.gene005611.t1 AT4G35520 27.134 328 203 8 6 328 2 298 7.64e-23 105
MS.gene005611.t1 AT4G35520 28.054 221 120 7 734 934 910 1111 9.01e-11 66.6
MS.gene005611.t1 AT4G35520 27.134 328 203 8 6 328 2 298 9.69e-23 105
MS.gene005611.t1 AT4G35520 28.054 221 120 7 734 934 922 1123 9.51e-11 66.6
MS.gene005611.t1 AT4G35520 27.134 328 203 8 6 328 2 298 1.00e-22 105
MS.gene005611.t1 AT4G35520 27.586 232 121 7 734 934 910 1125 4.82e-11 67.4
MS.gene005611.t1 AT4G35520 27.586 232 121 7 734 934 710 925 7.39e-11 67.0

Find 194 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTTATCATTGGTAAAT+TGG 0.152350 1.1:-65289827 MS.gene005611:CDS
CTTCAGTCTCTGACTACTTT+TGG 0.163663 1.1:-65292988 MS.gene005611:CDS
ACTGGGTAACGGAAGGAATT+TGG 0.197107 1.1:-65291973 MS.gene005611:CDS
TTGAGTTCTCTTTGTGCTTT+GGG 0.201918 1.1:-65292949 MS.gene005611:CDS
TTGAAATGATTTCAGGTTCT+TGG 0.223911 1.1:-65293051 MS.gene005611:intron
GCTTAGAAGTTTCATTAATT+TGG 0.226550 1.1:+65291055 None:intergenic
TTAAACTCTTTGCTTCTTAC+AGG 0.234975 1.1:+65292781 None:intergenic
CAGAGCGCACAAAACTTTAA+AGG 0.246050 1.1:-65291358 MS.gene005611:CDS
AAGAAAATTGCGCGACAAAT+TGG 0.251802 1.1:-65292841 MS.gene005611:CDS
GAGAGAGAAGAGACTTTCTT+TGG 0.257630 1.1:-65290418 MS.gene005611:CDS
TCAATGTAACTCCTGATAAA+AGG 0.268792 1.1:-65291803 MS.gene005611:CDS
GGGGATAACTCCAATCTTAT+TGG 0.270951 1.1:+65289282 None:intergenic
TTGTCTATAACTACCAATTA+TGG 0.281795 1.1:+65287212 None:intergenic
CCTGAGGAATCGCCACATTC+AGG 0.292943 1.1:+65291598 None:intergenic
CATGGAGAATGTTCCATAAT+TGG 0.303790 1.1:-65287225 MS.gene005611:CDS
GTTGAGTTCTCTTTGTGCTT+TGG 0.311062 1.1:-65292950 MS.gene005611:CDS
CAGAGGTTGTTGGTTCAATA+TGG 0.311266 1.1:+65289580 None:intergenic
CGGAATATACGTAAGGAATA+TGG 0.320588 1.1:-65292757 MS.gene005611:CDS
CTCTCTAAGGGCTTGCAATA+AGG 0.337830 1.1:+65291755 None:intergenic
CATTTGACGTTTAATCATTC+CGG 0.342851 1.1:-65292880 MS.gene005611:CDS
TACAGCAACAAAATTGTTAA+GGG 0.349954 1.1:+65291200 None:intergenic
TCTGAGAGCTGCAAAGTTGA+TGG 0.350885 1.1:-65292014 MS.gene005611:CDS
TCTTTCTGCTGTTCAATGTC+TGG 0.350891 1.1:+65290244 None:intergenic
CTGGGTAACGGAAGGAATTT+GGG 0.351699 1.1:-65291972 MS.gene005611:CDS
GTTTCAGATACTTGAGCATT+TGG 0.356986 1.1:-65286939 MS.gene005611:intron
TTCAATCTTGGATTTATCAT+TGG 0.358205 1.1:-65289835 MS.gene005611:CDS
TTACAGCAACAAAATTGTTA+AGG 0.359742 1.1:+65291199 None:intergenic
GTGATTGGACAATTCAATCT+TGG 0.365478 1.1:-65289847 MS.gene005611:CDS
TCCGTTACCCAGTCCAGGTT+TGG 0.367172 1.1:+65291983 None:intergenic
CGTGCAGGCGATGAACAAAT+TGG 0.368469 1.1:+65290516 None:intergenic
TCTTCTCTCTCCTACTCTTA+AGG 0.372090 1.1:+65290430 None:intergenic
AGATTTATTCATTGTGGATC+AGG 0.374375 1.1:-65289800 MS.gene005611:intron
GTCTCCTATCGTAACGAAAT+CGG 0.375863 1.1:-65291625 MS.gene005611:CDS
TATATCCATTTCAGGAAGAA+TGG 0.378291 1.1:-65288166 MS.gene005611:intron
AACAAGATCATATCTTCATT+TGG 0.379755 1.1:-65291079 MS.gene005611:CDS
CAATTCACATGGACATAATC+AGG 0.380435 1.1:-65289239 MS.gene005611:intron
ATAGCAAAAGGCGTTCGATT+TGG 0.383212 1.1:-65292173 MS.gene005611:CDS
TCACTATACGGCTGCAACTC+TGG 0.383524 1.1:-65290278 MS.gene005611:CDS
TTTATCAGATTGTTGCTAGA+TGG 0.385028 1.1:+65290570 None:intergenic
ACAGCATAAGAGGCATTATC+AGG 0.385292 1.1:+65291711 None:intergenic
GTTGGTTCAATATGGTTGAT+TGG 0.388187 1.1:+65289588 None:intergenic
GCAAACCAACGTACCATGTT+AGG 0.389360 1.1:+65290934 None:intergenic
CTTGAACAATCTTTCCAGTT+CGG 0.390899 1.1:+65290198 None:intergenic
TGATCTTGTTATCAGGTCAT+TGG 0.393473 1.1:+65291092 None:intergenic
AAATACTACAGAGCATGTTT+TGG 0.394023 1.1:-65290550 MS.gene005611:CDS
TTTGTTGTAAGCCCTCTCTA+AGG 0.396357 1.1:+65291742 None:intergenic
TATCTTCTGACCAGAGGACT+TGG 0.403945 1.1:+65290482 None:intergenic
AACGTCAAATGTGTCGCAAC+CGG 0.404806 1.1:+65292892 None:intergenic
TGAAATGCCGCAACCGTTAT+CGG 0.405670 1.1:+65293149 None:intergenic
CTTGTGGAGCTTGATTTCTA+AGG 0.406330 1.1:+65291127 None:intergenic
CATGAACACTTTCAACTGCT+TGG 0.406413 1.1:-65292057 MS.gene005611:CDS
GCCAACATTGCACGAACTCT+TGG 0.408478 1.1:+65287165 None:intergenic
GGTTGATTCGTGAGAGTGGT+GGG 0.409407 1.1:-65291407 MS.gene005611:CDS
CAATCCAGCAAATACAGATA+TGG 0.412593 1.1:-65290393 MS.gene005611:CDS
TAGAATACCTTGAAGCTGTT+TGG 0.415285 1.1:+65293126 None:intergenic
GAAGATATGATCTTGTTATC+AGG 0.417275 1.1:+65291085 None:intergenic
GAAGCAACTATTTCTTCCTC+AGG 0.429926 1.1:+65289261 None:intergenic
TTTGGCTGCACGAACACAAC+TGG 0.430222 1.1:-65292155 MS.gene005611:CDS
CAGGAAGAATGGATTTACTT+TGG 0.430284 1.1:-65288155 MS.gene005611:CDS
CATATGTAGGCCAATAAGAT+TGG 0.432843 1.1:-65289292 MS.gene005611:intron
TCAATACTGCTAGTATTTCT+CGG 0.433938 1.1:-65291557 MS.gene005611:CDS
TTCAGAAGCATTATTAGAAT+CGG 0.437195 1.1:+65291467 None:intergenic
AAATTCATTGACAGCATAAG+AGG 0.437225 1.1:+65291701 None:intergenic
TTGGTTCAATATGGTTGATT+GGG 0.438724 1.1:+65289589 None:intergenic
ACAGCAGAAAGAAAGGGTTT+TGG 0.441429 1.1:-65290233 MS.gene005611:CDS
CTATTCTCACATGTTGAAGA+AGG 0.444593 1.1:-65291429 MS.gene005611:CDS
GGCAGCAGCAGCCACCGAAC+TGG 0.447748 1.1:-65290212 MS.gene005611:CDS
TACAGATATGGAAAAGCTAA+TGG 0.451831 1.1:-65290381 MS.gene005611:CDS
GGACAGACTTTAATTTATAA+CGG 0.452106 1.1:+65288104 None:intergenic
TATATCTCTCAATGAGCATA+AGG 0.453173 1.1:-65291502 MS.gene005611:CDS
TTGATTCGTGAGAGTGGTGG+GGG 0.453706 1.1:-65291405 MS.gene005611:CDS
GTAAAATTCATGATTGCAAT+GGG 0.461439 1.1:+65291849 None:intergenic
TTTCTTTCCAAACCTGGACT+GGG 0.461861 1.1:-65291990 MS.gene005611:CDS
CATCAGATAGAGTTGAAATC+AGG 0.463046 1.1:+65287256 None:intergenic
ATCGTTCACAGAATCTGTTC+CGG 0.465982 1.1:-65293291 MS.gene005611:CDS
TTCCTTCCGTTACCCAGTCC+AGG 0.466385 1.1:+65291978 None:intergenic
TTAAAGACTTCGGCGAAGAA+TGG 0.467001 1.1:-65293182 MS.gene005611:CDS
CTGAGGAATCGCCACATTCA+GGG 0.467227 1.1:+65291599 None:intergenic
TTTAAGAGAGATTTCGATGC+TGG 0.469837 1.1:+65293200 None:intergenic
CATTTCACCAAACAGCTTCA+AGG 0.471334 1.1:-65293133 MS.gene005611:intron
CTGCTGTGGTTGATGCCATC+AGG 0.472176 1.1:+65291000 None:intergenic
AGAGCGCACAAAACTTTAAA+GGG 0.476324 1.1:-65291357 MS.gene005611:CDS
CTCACCTAAGCAGAGGTTGT+TGG 0.476645 1.1:+65289570 None:intergenic
TAATCATTCCGGTGTTCTTG+TGG 0.477100 1.1:-65292869 MS.gene005611:CDS
CAATACTGCTAGTATTTCTC+GGG 0.477701 1.1:-65291556 MS.gene005611:CDS
TGTCGATCATCAATTATGAT+TGG 0.479343 1.1:-65287132 MS.gene005611:CDS
TGGTTTCAAGTCACCGATAA+CGG 0.480127 1.1:-65293162 MS.gene005611:CDS
AACGAGGACGGTGAATGATC+CGG 0.483359 1.1:-65292911 MS.gene005611:CDS
CGTAAAATTCATGATTGCAA+TGG 0.483954 1.1:+65291848 None:intergenic
ACGTAAGGAATATGGAAAGT+TGG 0.490266 1.1:-65292749 MS.gene005611:CDS
GTTGATTCGTGAGAGTGGTG+GGG 0.490939 1.1:-65291406 MS.gene005611:CDS
ATCATCAAACCAATCGCAAA+AGG 0.493056 1.1:-65293315 MS.gene005611:CDS
ACATTGAACAGCAGAAAGAA+AGG 0.494491 1.1:-65290240 MS.gene005611:CDS
GGGTTGATTCGTGAGAGTGG+TGG 0.494804 1.1:-65291408 MS.gene005611:CDS
CCTGAATGTGGCGATTCCTC+AGG 0.494938 1.1:-65291598 MS.gene005611:CDS
GCATATGCCCTTATAGCAAA+AGG 0.495988 1.1:-65292185 MS.gene005611:CDS
CATGGAATTGTCCTCATGGC+AGG 0.498761 1.1:-65286901 MS.gene005611:CDS
GAATGGATTTACTTTGGAAG+AGG 0.499091 1.1:-65288149 MS.gene005611:CDS
TGAACCAACAACCTCTGCTT+AGG 0.499577 1.1:-65289574 MS.gene005611:intron
GATAACATCATAACAGTGCT+TGG 0.500424 1.1:-65292080 MS.gene005611:CDS
GGATCAAGATTTATTCATTG+TGG 0.501006 1.1:-65289806 MS.gene005611:CDS
GATTTCGATGCTGGTGGCGC+CGG 0.501956 1.1:+65293209 None:intergenic
AACATTGCACGAACTCTTGG+AGG 0.503231 1.1:+65287168 None:intergenic
TTAGATTCTCCCAAGTCCTC+TGG 0.504018 1.1:-65290492 MS.gene005611:CDS
ACTTGACGAAAATTCATAAG+AGG 0.505723 1.1:-65286856 MS.gene005611:CDS
TCTCAAGGACAGTTGTGAGT+GGG 0.510002 1.1:-65291272 MS.gene005611:CDS
ATGGAAAAGCTAATGGCAAA+AGG 0.512412 1.1:-65290374 MS.gene005611:intron
TTGGTTTCAGTATTTACTTG+TGG 0.514585 1.1:+65291111 None:intergenic
CTCAAGGACAGTTGTGAGTG+GGG 0.515053 1.1:-65291271 MS.gene005611:CDS
TTGATGATTTGCGATTCAAT+CGG 0.515545 1.1:+65293330 None:intergenic
GAGGTCAGAATTAACAATGC+AGG 0.518258 1.1:-65286837 MS.gene005611:CDS
AAGCAACTATTTCTTCCTCA+GGG 0.518792 1.1:+65289262 None:intergenic
GGAGCTTGATTTCTAAGGAC+AGG 0.519756 1.1:+65291132 None:intergenic
TTTAATTTATAACGGCATCC+AGG 0.521120 1.1:+65288112 None:intergenic
GTCTCAAGGACAGTTGTGAG+TGG 0.522054 1.1:-65291273 MS.gene005611:CDS
AATTGATGATCGACATGCTC+GGG 0.528848 1.1:+65287140 None:intergenic
TCCAAGAGTTCGTGCAATGT+TGG 0.531112 1.1:-65287166 MS.gene005611:CDS
CATTGAACAGCAGAAAGAAA+GGG 0.533665 1.1:-65290239 MS.gene005611:CDS
CTATCTGATGGTGATGGTCA+TGG 0.537313 1.1:-65287243 MS.gene005611:CDS
GAACAATCTTTCCAGTTCGG+TGG 0.538298 1.1:+65290201 None:intergenic
TCACAACTGTCCTTGAGACC+AGG 0.539057 1.1:+65291277 None:intergenic
AAGGACAGGCACTTCAGATA+AGG 0.540336 1.1:+65291146 None:intergenic
GGAATACTTCAGCAGAATGA+AGG 0.543403 1.1:-65290173 MS.gene005611:intron
TTGAAAAGAAAATTGCATGT+TGG 0.544226 1.1:+65290455 None:intergenic
TCAACTAAATGCCGCATGGT+TGG 0.546469 1.1:+65286878 None:intergenic
AACACCATGTTTGGAGTCGA+AGG 0.548138 1.1:-65288070 MS.gene005611:intron
TTGTTGTAAGCCCTCTCTAA+GGG 0.551985 1.1:+65291743 None:intergenic
TCCAAACCTGGACTGGGTAA+CGG 0.552195 1.1:-65291984 MS.gene005611:CDS
GAAGGGTTGATTCGTGAGAG+TGG 0.553809 1.1:-65291411 MS.gene005611:CDS
AATGCTTCTGAATCTGATGA+TGG 0.555834 1.1:-65291456 MS.gene005611:CDS
GACGAGTTCTTTAACGGCGG+AGG 0.557460 1.1:+65293248 None:intergenic
TTGGGAGAATCTAATCGTGC+AGG 0.560739 1.1:+65290501 None:intergenic
CAAGTCACCGATAACGGTTG+CGG 0.561953 1.1:-65293156 MS.gene005611:CDS
ATCAAGCTACCCTGGTCTCA+AGG 0.562398 1.1:-65291287 MS.gene005611:CDS
TAACGGCGGAGGAGAGGTCG+AGG 0.563344 1.1:+65293259 None:intergenic
AAGAGAGATTTCGATGCTGG+TGG 0.566861 1.1:+65293203 None:intergenic
CTCAGATATACATAATGACA+TGG 0.567030 1.1:+65292031 None:intergenic
ATCTTCTGACCAGAGGACTT+GGG 0.570934 1.1:+65290483 None:intergenic
TAATTGATGATCGACATGCT+CGG 0.574476 1.1:+65287139 None:intergenic
TAAGAAGCAAAGAGTTTAAG+CGG 0.579709 1.1:-65292777 MS.gene005611:CDS
TCACCATGGAATTGTCCTCA+TGG 0.580634 1.1:-65286905 MS.gene005611:CDS
TTATTGCAAGCCCTTAGAGA+GGG 0.581606 1.1:-65291753 MS.gene005611:CDS
TGAGTTCTCTTTGTGCTTTG+GGG 0.584399 1.1:-65292948 MS.gene005611:CDS
TTCGACGAGTTCTTTAACGG+CGG 0.588864 1.1:+65293245 None:intergenic
TATTCTCACATGTTGAAGAA+GGG 0.589142 1.1:-65291428 MS.gene005611:CDS
ATTATGATTGGTGATGCACT+TGG 0.592485 1.1:-65287120 MS.gene005611:CDS
GTTTAAGCGGAATATACGTA+AGG 0.594722 1.1:-65292764 MS.gene005611:CDS
ACAAATTGGAACGACTGTGA+CGG 0.594875 1.1:-65292827 MS.gene005611:CDS
TCAAGGACAGTTGTGAGTGG+GGG 0.595006 1.1:-65291270 MS.gene005611:CDS
GAAATCGGCATCCCTGAATG+TGG 0.595427 1.1:-65291610 MS.gene005611:CDS
GAGGATCTAAATGCACCACC+TGG 0.595531 1.1:-65288130 MS.gene005611:CDS
CTGATTTCAACTCTATCTGA+TGG 0.597097 1.1:-65287255 MS.gene005611:CDS
ACTGGAAAGATTGTTCAAGA+AGG 0.599565 1.1:-65290194 MS.gene005611:CDS
AATAGTTGCTTCAATTCACA+TGG 0.600812 1.1:-65289250 MS.gene005611:CDS
TTGCAGCAACGTAATCCTGA+TGG 0.603672 1.1:-65291015 MS.gene005611:CDS
GAAATCTCTCTTAAAGACTT+CGG 0.605620 1.1:-65293192 MS.gene005611:CDS
GAGGTCGAGGATGACTTGAC+CGG 0.606410 1.1:+65293272 None:intergenic
ACTTTAAAGGGTGACAAGAG+TGG 0.606920 1.1:-65291345 MS.gene005611:CDS
GTTCTTTAACGGCGGAGGAG+AGG 0.606990 1.1:+65293253 None:intergenic
TCAACTCTATCTGATGGTGA+TGG 0.607257 1.1:-65287249 MS.gene005611:CDS
TCATTCCGGTGTTCTTGTGG+CGG 0.607818 1.1:-65292866 MS.gene005611:CDS
TGGAAGAAATGAAATGCAGA+AGG 0.612549 1.1:-65287100 MS.gene005611:intron
CACAACTGTCCTTGAGACCA+GGG 0.613211 1.1:+65291278 None:intergenic
TCTACCTTCGACTCCAAACA+TGG 0.613546 1.1:+65288066 None:intergenic
CTTATTGCAAGCCCTTAGAG+AGG 0.613621 1.1:-65291754 MS.gene005611:CDS
TTTGCGCAATCAAGCTACCC+TGG 0.613771 1.1:-65291295 MS.gene005611:CDS
GCAGGCGATGAACAAATTGG+AGG 0.613983 1.1:+65290519 None:intergenic
TGGAGGGCAGACTGAATCTG+AGG 0.614764 1.1:+65287185 None:intergenic
GTCGAAAATAGCTTAGACGC+CGG 0.617734 1.1:-65293228 MS.gene005611:CDS
AATAATTCTGACCGCAACAG+TGG 0.621125 1.1:-65291528 MS.gene005611:CDS
AACCTGGACTGGGTAACGGA+AGG 0.622205 1.1:-65291980 MS.gene005611:CDS
CAGGCGATGAACAAATTGGA+GGG 0.629188 1.1:+65290520 None:intergenic
ATGCTGTCAATGAATTTATG+CGG 0.634362 1.1:-65291695 MS.gene005611:CDS
CTGCCATGAGGACAATTCCA+TGG 0.639214 1.1:+65286902 None:intergenic
ACATTGCACGAACTCTTGGA+GGG 0.639683 1.1:+65287169 None:intergenic
CAAGTCAACTAAATGCCGCA+TGG 0.640175 1.1:+65286874 None:intergenic
TTTGACAATTGAAACGAGGA+CGG 0.642994 1.1:-65292923 MS.gene005611:CDS
ATAAGTTCTCACCTAAGCAG+AGG 0.645938 1.1:+65289563 None:intergenic
TACTGACAGAGAACCTAACA+TGG 0.647355 1.1:-65290947 MS.gene005611:intron
TCAGATATACATAATGACAT+GGG 0.650966 1.1:+65292032 None:intergenic
AGCAACTATTTCTTCCTCAG+GGG 0.653963 1.1:+65289263 None:intergenic
TCTGTGGTACTTAAAACCCA+AGG 0.654508 1.1:-65292119 MS.gene005611:CDS
GGAGAATATCTTCTGACCAG+AGG 0.658458 1.1:+65290476 None:intergenic
CGCATGGTTGGCCTGCCATG+AGG 0.658661 1.1:+65286890 None:intergenic
CTCATGGCAGGCCAACCATG+CGG 0.662792 1.1:-65286889 MS.gene005611:CDS
AATTTATAACGGCATCCAGG+TGG 0.663899 1.1:+65288115 None:intergenic
GAGATATACTACCACTGTTG+CGG 0.665026 1.1:+65291517 None:intergenic
TCAGTATAATGCTCTTCCTG+AGG 0.671539 1.1:+65291582 None:intergenic
ACAGTGAATTTACACTGCTG+TGG 0.676981 1.1:+65290986 None:intergenic
GATGCCGATTTCGTTACGAT+AGG 0.678228 1.1:+65291621 None:intergenic
GGAATTTGACAATTGAAACG+AGG 0.704239 1.1:-65292927 MS.gene005611:CDS
GATAGGAGACTTCTTCTGAG+AGG 0.706776 1.1:+65291638 None:intergenic
TGGCAGAGCTGAAATCACCA+TGG 0.715825 1.1:-65286919 MS.gene005611:CDS
AAGATTGGAGTTATCCCCTG+AGG 0.743451 1.1:-65289277 MS.gene005611:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGAATATTAATAATGT+GGG - chr1.1:65287782-65287801 MS.gene005611:intron 10.0%
!! AATTTATTACACTGAAATAT+TGG - chr1.1:65292578-65292597 MS.gene005611:intron 15.0%
!! TAAATATATCATGTATTCAA+AGG - chr1.1:65290266-65290285 MS.gene005611:CDS 15.0%
!!! AAAAATATTTTCCTTTTATC+AGG + chr1.1:65288376-65288395 None:intergenic 15.0%
!!! ATTATCTTTTTGTGTATTTA+AGG - chr1.1:65291212-65291231 MS.gene005611:CDS 15.0%
!!! CATTTAGAATATTAATAATG+TGG - chr1.1:65287781-65287800 MS.gene005611:intron 15.0%
!!! TAAATATGATTTTAGTATGA+TGG + chr1.1:65290209-65290228 None:intergenic 15.0%
!!! TAATTTTTTTAGTCACTATA+CGG - chr1.1:65289875-65289894 MS.gene005611:intron 15.0%
!!! TATATTTAATCTGAAATTGT+AGG + chr1.1:65290254-65290273 None:intergenic 15.0%
!!! TATTACTTTCTACAATTTTA+AGG - chr1.1:65287816-65287835 MS.gene005611:intron 15.0%
!!! TTCAATTTTTGCATTTATTT+TGG - chr1.1:65292420-65292439 MS.gene005611:intron 15.0%
!!! TTTAGAATATTAATAATGTG+GGG - chr1.1:65287783-65287802 MS.gene005611:intron 15.0%
!! AAAAACATGCATATGTATAT+TGG - chr1.1:65291413-65291432 MS.gene005611:CDS 20.0%
!! AACAAAAAATAAATCCCAAT+AGG + chr1.1:65287869-65287888 None:intergenic 20.0%
!! AATTTAGGTATTTACTCAAA+TGG + chr1.1:65287518-65287537 None:intergenic 20.0%
!! ACATTTGCATAATTTATGAA+AGG - chr1.1:65291809-65291828 MS.gene005611:CDS 20.0%
!! ATAGAATCCATAAAATTCAA+AGG + chr1.1:65292126-65292145 None:intergenic 20.0%
!! ATCAAATTCAACAAGTTATT+TGG + chr1.1:65291519-65291538 None:intergenic 20.0%
!! ATTTGAGTAAATACCTAAAT+TGG - chr1.1:65287517-65287536 MS.gene005611:intron 20.0%
!! CTAATAAAAATTGCATATGT+AGG - chr1.1:65290860-65290879 MS.gene005611:intron 20.0%
!! GATTAATTTAATGATTCTGT+TGG - chr1.1:65292150-65292169 MS.gene005611:CDS 20.0%
!! TATGATATATTCTTTCTGTT+GGG - chr1.1:65287947-65287966 MS.gene005611:intron 20.0%
!! TTAGAATATTAATAATGTGG+GGG - chr1.1:65287784-65287803 MS.gene005611:intron 20.0%
!! TTAGTAGAACAATAAATGTA+AGG - chr1.1:65293163-65293182 MS.gene005611:CDS 20.0%
!!! AAAAAAAACATGATTTGTGA+TGG - chr1.1:65290498-65290517 MS.gene005611:CDS 20.0%
!!! AAAACATTGATTTGGTTTTA+TGG + chr1.1:65290160-65290179 None:intergenic 20.0%
!!! AATGTCATTTGATATTTGAT+TGG - chr1.1:65292337-65292356 MS.gene005611:intron 20.0%
!!! AGACAGTATTTTTTTGTAAA+CGG - chr1.1:65288220-65288239 MS.gene005611:intron 20.0%
!!! ATATGTTTGAAATCATTACT+TGG - chr1.1:65291443-65291462 MS.gene005611:CDS 20.0%
!!! ATCAATATGTTCATTTTCTA+AGG + chr1.1:65291194-65291213 None:intergenic 20.0%
!!! ATCATTTTCTGATTTAGTAA+CGG + chr1.1:65289435-65289454 None:intergenic 20.0%
!!! ATTTTGTTTGAAATGATTTC+AGG - chr1.1:65287107-65287126 MS.gene005611:CDS 20.0%
!!! CCTAATACTACATTTTTAAA+GGG + chr1.1:65287069-65287088 None:intergenic 20.0%
!!! CCTTTAAAAATGTAGTATTA+GGG - chr1.1:65287067-65287086 MS.gene005611:intron 20.0%
!!! CTAATACTACATTTTTAAAG+GGG + chr1.1:65287068-65287087 None:intergenic 20.0%
!!! CTTTGATATTATGTTTTAAC+AGG - chr1.1:65290296-65290315 MS.gene005611:intron 20.0%
!!! TAAAACCAAATCAATGTTTT+TGG - chr1.1:65290160-65290179 MS.gene005611:intron 20.0%
!!! TATGATTTTCCTACTTTATA+AGG + chr1.1:65289835-65289854 None:intergenic 20.0%
!!! TTCAATTTTTGCATTCATTT+CGG - chr1.1:65292256-65292275 MS.gene005611:intron 20.0%
!!! TTGATTTCATATGATGTTTT+TGG - chr1.1:65291534-65291553 MS.gene005611:CDS 20.0%
! AAATTCAACAAGTTATTTGG+TGG + chr1.1:65291516-65291535 None:intergenic 25.0%
! AACAAGATCATATCTTCATT+TGG - chr1.1:65289086-65289105 MS.gene005611:intron 25.0%
! AATTGGTACTTGAAATTGTA+AGG - chr1.1:65287534-65287553 MS.gene005611:intron 25.0%
! ACATATTTGAATCTTGTGAA+TGG - chr1.1:65292724-65292743 MS.gene005611:intron 25.0%
! AGAAACTATATTTCATCAAC+AGG - chr1.1:65291012-65291031 MS.gene005611:CDS 25.0%
! AGCAAAAGAATGCATTTATA+TGG + chr1.1:65290459-65290478 None:intergenic 25.0%
! AGTATGAAACAAAGATAAAG+TGG + chr1.1:65289505-65289524 None:intergenic 25.0%
! AGTGACTGAATCAAATATAA+TGG + chr1.1:65291847-65291866 None:intergenic 25.0%
! ATTTGCATTATATCCATTTC+AGG - chr1.1:65291991-65292010 MS.gene005611:CDS 25.0%
! CATAATTTATGAAAGGTTGT+TGG - chr1.1:65291816-65291835 MS.gene005611:CDS 25.0%
! GATAACCTATACATACAAAT+CGG - chr1.1:65287725-65287744 MS.gene005611:intron 25.0%
! GATCATGAACAAATAAAGAA+AGG + chr1.1:65290831-65290850 None:intergenic 25.0%
! GCAACTAAAGCATAAAATAT+TGG + chr1.1:65291933-65291952 None:intergenic 25.0%
! GCTTAGAAGTTTCATTAATT+TGG + chr1.1:65289113-65289132 None:intergenic 25.0%
! GTAAAATTCATGATTGCAAT+GGG + chr1.1:65288319-65288338 None:intergenic 25.0%
! GTATGATATATTCTTTCTGT+TGG - chr1.1:65287946-65287965 MS.gene005611:intron 25.0%
! TACAGCAACAAAATTGTTAA+GGG + chr1.1:65288968-65288987 None:intergenic 25.0%
! TCAGATATACATAATGACAT+GGG + chr1.1:65288136-65288155 None:intergenic 25.0%
! TCTGACAATAACACAAAATA+TGG + chr1.1:65290995-65291014 None:intergenic 25.0%
! TGATTAGCATTATGCAATTT+CGG - chr1.1:65287754-65287773 MS.gene005611:intron 25.0%
! TGGATTTATCATTGGTAAAT+TGG - chr1.1:65290338-65290357 MS.gene005611:intron 25.0%
! TGTAATTTCTTAGATCGTTT+AGG + chr1.1:65287594-65287613 None:intergenic 25.0%
! TTACAGCAACAAAATTGTTA+AGG + chr1.1:65288969-65288988 None:intergenic 25.0%
! TTCAATCTTGGATTTATCAT+TGG - chr1.1:65290330-65290349 MS.gene005611:intron 25.0%
! TTGAAAAGAAAATTGCATGT+TGG + chr1.1:65289713-65289732 None:intergenic 25.0%
! TTGTCTATAACTACCAATTA+TGG + chr1.1:65292956-65292975 None:intergenic 25.0%
!! ACAATTTCAAGTACCAATTT+AGG + chr1.1:65287533-65287552 None:intergenic 25.0%
!! ATATGGATTAATCATTCTAC+AGG + chr1.1:65290442-65290461 None:intergenic 25.0%
!! CATTGCAATCATGAATTTTA+CGG - chr1.1:65288318-65288337 MS.gene005611:intron 25.0%
!! CCCTAATACTACATTTTTAA+AGG + chr1.1:65287070-65287089 None:intergenic 25.0%
!! CCCTTTAAAAATGTAGTATT+AGG - chr1.1:65287066-65287085 MS.gene005611:intron 25.0%
!! GGACAGACTTTAATTTATAA+CGG + chr1.1:65292064-65292083 None:intergenic 25.0%
!! GTATTCCAAAAACATTGATT+TGG + chr1.1:65290168-65290187 None:intergenic 25.0%
!! TCATTTTCTGATTTAGTAAC+GGG + chr1.1:65289434-65289453 None:intergenic 25.0%
!! TTTAATTTCTAATGTGCATG+TGG + chr1.1:65291789-65291808 None:intergenic 25.0%
!!! ATTATGTTTTAACAGGTGAT+TGG - chr1.1:65290303-65290322 MS.gene005611:intron 25.0%
!!! TCAATGCTATTTTAGTAAGT+GGG - chr1.1:65290089-65290108 MS.gene005611:intron 25.0%
!!! TTCAGAAGCATTATTAGAAT+CGG + chr1.1:65288701-65288720 None:intergenic 25.0%
!!! TTTGCATTTATTTTGGAAGA+TGG - chr1.1:65292427-65292446 MS.gene005611:intron 25.0%
!!! TTTTAGAGAATCATTTCCTT+GGG + chr1.1:65288065-65288084 None:intergenic 25.0%
AAATCCCAATAGGAATAGAA+TGG + chr1.1:65287859-65287878 None:intergenic 30.0%
AAATGTTTCAAACAAACCCT+TGG - chr1.1:65292671-65292690 MS.gene005611:intron 30.0%
AAATTCATTGACAGCATAAG+AGG + chr1.1:65288467-65288486 None:intergenic 30.0%
AATAGTTGCTTCAATTCACA+TGG - chr1.1:65290915-65290934 MS.gene005611:intron 30.0%
ACAACTAGTTGAACAATTTG+AGG + chr1.1:65291712-65291731 None:intergenic 30.0%
ACTAAACCAGATACTTGTAA+AGG + chr1.1:65293148-65293167 None:intergenic 30.0%
ACTTGACGAAAATTCATAAG+AGG - chr1.1:65293309-65293328 MS.gene005611:CDS 30.0%
AGATTTATTCATTGTGGATC+AGG - chr1.1:65290365-65290384 MS.gene005611:intron 30.0%
ATAACCTTGTATCAAGATGA+TGG - chr1.1:65292513-65292532 MS.gene005611:intron 30.0%
ATATCACCGCTTGATAAATA+TGG + chr1.1:65290963-65290982 None:intergenic 30.0%
ATGCTGTCAATGAATTTATG+CGG - chr1.1:65288470-65288489 MS.gene005611:intron 30.0%
ATTAACAAACTCAGTGAAAC+AGG + chr1.1:65287924-65287943 None:intergenic 30.0%
ATTATCAATTAAAGCAGCAC+AGG + chr1.1:65291346-65291365 None:intergenic 30.0%
CAACTAGTTGAACAATTTGA+GGG + chr1.1:65291711-65291730 None:intergenic 30.0%
CAGTGAAACAGGAATAAAAA+AGG + chr1.1:65287913-65287932 None:intergenic 30.0%
CATTTGACGTTTAATCATTC+CGG - chr1.1:65287285-65287304 MS.gene005611:intron 30.0%
CGTAAAATTCATGATTGCAA+TGG + chr1.1:65288320-65288339 None:intergenic 30.0%
CTCAGATATACATAATGACA+TGG + chr1.1:65288137-65288156 None:intergenic 30.0%
CTGTAGTTTCAAAAACATAG+TGG + chr1.1:65290397-65290416 None:intergenic 30.0%
CTTAGAAAAACCTAACAACT+TGG + chr1.1:65290125-65290144 None:intergenic 30.0%
GAAATCTCTCTTAAAGACTT+CGG - chr1.1:65286973-65286992 MS.gene005611:intron 30.0%
GAAATTCTGTATTAGAAACG+AGG - chr1.1:65292600-65292619 MS.gene005611:intron 30.0%
GGATCAAGATTTATTCATTG+TGG - chr1.1:65290359-65290378 MS.gene005611:intron 30.0%
TAAATCCATTCTTCCTGAAA+TGG + chr1.1:65292007-65292026 None:intergenic 30.0%
TAAGAAGCAAAGAGTTTAAG+CGG - chr1.1:65287388-65287407 MS.gene005611:intron 30.0%
TAAGCTAATGTCTTCAACAA+TGG - chr1.1:65291738-65291757 MS.gene005611:CDS 30.0%
TACAGATATGGAAAAGCTAA+TGG - chr1.1:65289784-65289803 MS.gene005611:intron 30.0%
TACAGTAAAAACACCATGTT+TGG - chr1.1:65292086-65292105 MS.gene005611:CDS 30.0%
TACTCCATTCTATTCCTATT+GGG - chr1.1:65287852-65287871 MS.gene005611:intron 30.0%
TAGGAATAGAATGGAGTAAT+TGG + chr1.1:65287850-65287869 None:intergenic 30.0%
TATATCCATTTCAGGAAGAA+TGG - chr1.1:65291999-65292018 MS.gene005611:CDS 30.0%
TATATCTCTCAATGAGCATA+AGG - chr1.1:65288663-65288682 MS.gene005611:intron 30.0%
TATTCTCACATGTTGAAGAA+GGG - chr1.1:65288737-65288756 MS.gene005611:intron 30.0%
TCAATACTGCTAGTATTTCT+CGG - chr1.1:65288608-65288627 MS.gene005611:intron 30.0%
TCAATGTAACTCCTGATAAA+AGG - chr1.1:65288362-65288381 MS.gene005611:intron 30.0%
TGGCAAAAATGTAAAATCTG+TGG - chr1.1:65288030-65288049 MS.gene005611:intron 30.0%
TGTAGGACTATAATGACATT+AGG - chr1.1:65287648-65287667 MS.gene005611:intron 30.0%
TGTCGATCATCAATTATGAT+TGG - chr1.1:65293033-65293052 MS.gene005611:CDS 30.0%
TGTGCACGTGTTATAAAATA+AGG + chr1.1:65293125-65293144 None:intergenic 30.0%
TGTTGAGTTCAAAGTTACAA+AGG - chr1.1:65290757-65290776 MS.gene005611:intron 30.0%
TTAAACTCTTTGCTTCTTAC+AGG + chr1.1:65287387-65287406 None:intergenic 30.0%
TTACTCCATTCTATTCCTAT+TGG - chr1.1:65287851-65287870 MS.gene005611:intron 30.0%
TTGATACAAGGTTATGTGAA+TGG + chr1.1:65292508-65292527 None:intergenic 30.0%
TTGGTTCAATATGGTTGATT+GGG + chr1.1:65290579-65290598 None:intergenic 30.0%
TTGGTTTCAGTATTTACTTG+TGG + chr1.1:65289057-65289076 None:intergenic 30.0%
TTTATCAGATTGTTGCTAGA+TGG + chr1.1:65289598-65289617 None:intergenic 30.0%
! AAATACTACAGAGCATGTTT+TGG - chr1.1:65289615-65289634 MS.gene005611:CDS 30.0%
! ATCAAGATGATGGTAGAAAA+TGG - chr1.1:65292523-65292542 MS.gene005611:intron 30.0%
! ATTTTCGACGAGTTCTTTAA+CGG + chr1.1:65286926-65286945 None:intergenic 30.0%
! CTCATTTCTTATTTCGTTTC+TGG + chr1.1:65292650-65292669 None:intergenic 30.0%
! GAAGATATGATCTTGTTATC+AGG + chr1.1:65289083-65289102 None:intergenic 30.0%
! GGTAGAACCTTTGAATTTTA+TGG - chr1.1:65292116-65292135 MS.gene005611:CDS 30.0%
! TATGTGATTCTTTTGTGCAT+TGG - chr1.1:65292361-65292380 MS.gene005611:intron 30.0%
! TGCAAATTTTCAATCTCACT+TGG + chr1.1:65289135-65289154 None:intergenic 30.0%
! TTCACAAGTTTTCCGATTTT+TGG + chr1.1:65288262-65288281 None:intergenic 30.0%
! TTGACATCATATGCTTTTGT+TGG + chr1.1:65288346-65288365 None:intergenic 30.0%
! TTGATGATTTGCGATTCAAT+CGG + chr1.1:65286838-65286857 None:intergenic 30.0%
! TTTAATTTATAACGGCATCC+AGG + chr1.1:65292056-65292075 None:intergenic 30.0%
! TTTTCCATATCTGTATTTGC+TGG + chr1.1:65289779-65289798 None:intergenic 30.0%
!! AAACATGGTGTTTTTACTGT+AGG + chr1.1:65292087-65292106 None:intergenic 30.0%
!! AACATGGTGTTTTTACTGTA+GGG + chr1.1:65292086-65292105 None:intergenic 30.0%
!! AATTTTAAAGATAACCCCCA+CGG + chr1.1:65291892-65291911 None:intergenic 30.0%
!! AGTATGATGGATTAGATATG+CGG + chr1.1:65290196-65290215 None:intergenic 30.0%
!! CTTTTAGAGAATCATTTCCT+TGG + chr1.1:65288066-65288085 None:intergenic 30.0%
!! TTGAAATGATTTCAGGTTCT+TGG - chr1.1:65287114-65287133 MS.gene005611:CDS 30.0%
!! TTTAAGTTGAAGTTCCTTAG+TGG - chr1.1:65289404-65289423 MS.gene005611:intron 30.0%
!!! ACATTGATTTGGTTTTATGG+TGG + chr1.1:65290157-65290176 None:intergenic 30.0%
!!! AGTAAGATACTTTTTTTCCG+TGG - chr1.1:65291872-65291891 MS.gene005611:CDS 30.0%
!!! CAATGCTATTTTAGTAAGTG+GGG - chr1.1:65290090-65290109 MS.gene005611:intron 30.0%
!!! CTCAATGCTATTTTAGTAAG+TGG - chr1.1:65290088-65290107 MS.gene005611:intron 30.0%
!!! GTAAGATACTTTTTTTCCGT+GGG - chr1.1:65291873-65291892 MS.gene005611:CDS 30.0%
!!! TAAGATACTTTTTTTCCGTG+GGG - chr1.1:65291874-65291893 MS.gene005611:CDS 30.0%
!!! TGCGTTTTTTTGCATCTTTA+TGG - chr1.1:65291950-65291969 MS.gene005611:CDS 30.0%
!!! TTTATTTTGGAAGATGGTTC+AGG - chr1.1:65292433-65292452 MS.gene005611:intron 30.0%
AAATTCATGACTGGTGCATT+AGG + chr1.1:65291265-65291284 None:intergenic 35.0%
AAGAAAATTGCGCGACAAAT+TGG - chr1.1:65287324-65287343 MS.gene005611:intron 35.0%
AAGTTCAAACTTCACAGCTT+TGG + chr1.1:65291683-65291702 None:intergenic 35.0%
AATGCTTCTGAATCTGATGA+TGG - chr1.1:65288709-65288728 MS.gene005611:intron 35.0%
AATTCATGACTGGTGCATTA+GGG + chr1.1:65291264-65291283 None:intergenic 35.0%
ACATTGAACAGCAGAAAGAA+AGG - chr1.1:65289925-65289944 MS.gene005611:intron 35.0%
ACGTAAGGAATATGGAAAGT+TGG - chr1.1:65287416-65287435 MS.gene005611:intron 35.0%
ACGTGTTATAAAATAAGGCG+AGG + chr1.1:65293120-65293139 None:intergenic 35.0%
ACTGGAAAGATTGTTCAAGA+AGG - chr1.1:65289971-65289990 MS.gene005611:intron 35.0%
AGAGCGCACAAAACTTTAAA+GGG - chr1.1:65288808-65288827 MS.gene005611:intron 35.0%
AGTCCTACAAATAACAACGT+AGG + chr1.1:65287637-65287656 None:intergenic 35.0%
ATATAGTCATGATCGACCAA+GGG - chr1.1:65292176-65292195 MS.gene005611:CDS 35.0%
ATCATCAAACCAATCGCAAA+AGG - chr1.1:65286850-65286869 MS.gene005611:CDS 35.0%
ATGGAAAAGCTAATGGCAAA+AGG - chr1.1:65289791-65289810 MS.gene005611:intron 35.0%
CAATAATCACATGGTAAAGC+TGG - chr1.1:65290684-65290703 MS.gene005611:intron 35.0%
CAATACTGCTAGTATTTCTC+GGG - chr1.1:65288609-65288628 MS.gene005611:intron 35.0%
CAATCCAGCAAATACAGATA+TGG - chr1.1:65289772-65289791 MS.gene005611:intron 35.0%
CAATTCACATGGACATAATC+AGG - chr1.1:65290926-65290945 MS.gene005611:intron 35.0%
CATATGTAGGCCAATAAGAT+TGG - chr1.1:65290873-65290892 MS.gene005611:intron 35.0%
CATCAGATAGAGTTGAAATC+AGG + chr1.1:65292912-65292931 None:intergenic 35.0%
CATGGAGAATGTTCCATAAT+TGG - chr1.1:65292940-65292959 MS.gene005611:CDS 35.0%
CATTGAACAGCAGAAAGAAA+GGG - chr1.1:65289926-65289945 MS.gene005611:intron 35.0%
CGGAATATACGTAAGGAATA+TGG - chr1.1:65287408-65287427 MS.gene005611:intron 35.0%
CGTGTTATAAAATAAGGCGA+GGG + chr1.1:65293119-65293138 None:intergenic 35.0%
CTAAGCTTGGATCTAAAGAT+TGG - chr1.1:65292696-65292715 MS.gene005611:intron 35.0%
CTAGAGCCATATTTATCAAG+CGG - chr1.1:65290954-65290973 MS.gene005611:CDS 35.0%
CTATTCTCACATGTTGAAGA+AGG - chr1.1:65288736-65288755 MS.gene005611:intron 35.0%
CTGATTTCAACTCTATCTGA+TGG - chr1.1:65292910-65292929 MS.gene005611:CDS 35.0%
CTTGAACAATCTTTCCAGTT+CGG + chr1.1:65289970-65289989 None:intergenic 35.0%
GATAACATCATAACAGTGCT+TGG - chr1.1:65288085-65288104 MS.gene005611:CDS 35.0%
GGAAAACATATTGTGTGCAT+TGG - chr1.1:65292197-65292216 MS.gene005611:intron 35.0%
GGAATTTGACAATTGAAACG+AGG - chr1.1:65287238-65287257 MS.gene005611:CDS 35.0%
GGACTATAATGACATTAGGT+TGG - chr1.1:65287652-65287671 MS.gene005611:intron 35.0%
GGATTAATCATTCTACAGGA+TGG + chr1.1:65290438-65290457 None:intergenic 35.0%
GTCCTACAAATAACAACGTA+GGG + chr1.1:65287636-65287655 None:intergenic 35.0%
GTGATTGGACAATTCAATCT+TGG - chr1.1:65290318-65290337 MS.gene005611:intron 35.0%
GTGTTATAAAATAAGGCGAG+GGG + chr1.1:65293118-65293137 None:intergenic 35.0%
GTTTAAGCGGAATATACGTA+AGG - chr1.1:65287401-65287420 MS.gene005611:intron 35.0%
GTTTCAGATACTTGAGCATT+TGG - chr1.1:65293226-65293245 MS.gene005611:CDS 35.0%
TAGAATACCTTGAAGCTGTT+TGG + chr1.1:65287042-65287061 None:intergenic 35.0%
TAGCGATTGAAACCAATCTT+CGG + chr1.1:65289268-65289287 None:intergenic 35.0%
TATATAGTCATGATCGACCA+AGG - chr1.1:65292175-65292194 MS.gene005611:CDS 35.0%
TCGTACTCTCCTTATAAAGT+AGG - chr1.1:65289823-65289842 MS.gene005611:CDS 35.0%
TCTACCATCATCTTGATACA+AGG + chr1.1:65292520-65292539 None:intergenic 35.0%
TCTGCATCTTCACATGATTA+AGG + chr1.1:65291471-65291490 None:intergenic 35.0%
TGAATCAATTGCGCATAGAA+TGG - chr1.1:65292800-65292819 MS.gene005611:CDS 35.0%
TGGAAGAAATGAAATGCAGA+AGG - chr1.1:65293065-65293084 MS.gene005611:intron 35.0%
TGTGTTTCTTGTAACATCAC+TGG + chr1.1:65292627-65292646 None:intergenic 35.0%
TTAATCATTCTACAGGATGG+TGG + chr1.1:65290435-65290454 None:intergenic 35.0%
TTCATTTCGGAAGATGATTC+AGG - chr1.1:65292269-65292288 MS.gene005611:intron 35.0%
TTGAATCTTGTGAATGGCAA+GGG - chr1.1:65292730-65292749 MS.gene005611:intron 35.0%
TTGAGTTCTCTTTGTGCTTT+GGG - chr1.1:65287216-65287235 MS.gene005611:CDS 35.0%
TTTAAGAGAGATTTCGATGC+TGG + chr1.1:65286968-65286987 None:intergenic 35.0%
TTTGAATCTTGTGAATGGCA+AGG - chr1.1:65292729-65292748 MS.gene005611:intron 35.0%
TTTGACAATTGAAACGAGGA+CGG - chr1.1:65287242-65287261 MS.gene005611:CDS 35.0%
! AAGCAACTATTTCTTCCTCA+GGG + chr1.1:65290906-65290925 None:intergenic 35.0%
! ATGTCAAGTTTTGCGTAGTA+GGG + chr1.1:65291288-65291307 None:intergenic 35.0%
! CAGGAAGAATGGATTTACTT+TGG - chr1.1:65292010-65292029 MS.gene005611:CDS 35.0%
! CTCAAAACAGTCTTCTTTTG+CGG + chr1.1:65288500-65288519 None:intergenic 35.0%
! CTTATTCTGCTGCAAAGTTT+TGG - chr1.1:65290719-65290738 MS.gene005611:intron 35.0%
! GAATGGATTTACTTTGGAAG+AGG - chr1.1:65292016-65292035 MS.gene005611:CDS 35.0%
! GTTGGTTCAATATGGTTGAT+TGG + chr1.1:65290580-65290599 None:intergenic 35.0%
! TAATTGATGATCGACATGCT+CGG + chr1.1:65293029-65293048 None:intergenic 35.0%
! TACTTTTGGATTTAGAGGTG+AGG - chr1.1:65287191-65287210 MS.gene005611:CDS 35.0%
! TGATCTTGTTATCAGGTCAT+TGG + chr1.1:65289076-65289095 None:intergenic 35.0%
! TGTTGAAGACATTAGCTTAC+AGG + chr1.1:65291737-65291756 None:intergenic 35.0%
! TTTTCTCCCAACAGATGTTA+AGG - chr1.1:65292885-65292904 MS.gene005611:CDS 35.0%
!! ACATGGTGTTTTTACTGTAG+GGG + chr1.1:65292085-65292104 None:intergenic 35.0%
!! ATTATGATTGGTGATGCACT+TGG - chr1.1:65293045-65293064 MS.gene005611:intron 35.0%
!! CTGACTACTTTTGGATTTAG+AGG - chr1.1:65287186-65287205 MS.gene005611:CDS 35.0%
!! CTTCACCGATTTGTATGTAT+AGG + chr1.1:65287733-65287752 None:intergenic 35.0%
!! CTTTTCAAGACCTTAAGAGT+AGG - chr1.1:65289725-65289744 MS.gene005611:intron 35.0%
!! GACATTAGGTTGGTAATATC+AGG - chr1.1:65287662-65287681 MS.gene005611:intron 35.0%
!! GGAAAGTCTATTGACTTACA+CGG - chr1.1:65292299-65292318 MS.gene005611:intron 35.0%
!! TAGCATTGAGTATTGACATC+TGG + chr1.1:65290078-65290097 None:intergenic 35.0%
!!! AAGATACTTTTTTTCCGTGG+GGG - chr1.1:65291875-65291894 MS.gene005611:CDS 35.0%
AATAATTCTGACCGCAACAG+TGG - chr1.1:65288637-65288656 MS.gene005611:intron 40.0%
AATTTATAACGGCATCCAGG+TGG + chr1.1:65292053-65292072 None:intergenic 40.0%
ACAAATTGGAACGACTGTGA+CGG - chr1.1:65287338-65287357 MS.gene005611:intron 40.0%
ACAGTGAATTTACACTGCTG+TGG + chr1.1:65289182-65289201 None:intergenic 40.0%
AGATCCAAGCTTAGAACCAA+GGG + chr1.1:65292690-65292709 None:intergenic 40.0%
AGTCAATAGACTTTCCAGCT+TGG + chr1.1:65292295-65292314 None:intergenic 40.0%
ATAAGTTCTCACCTAAGCAG+AGG + chr1.1:65290605-65290624 None:intergenic 40.0%
ATCAGGTCCTTAACATCTGT+TGG + chr1.1:65292895-65292914 None:intergenic 40.0%
ATCGTTCACAGAATCTGTTC+CGG - chr1.1:65286874-65286893 MS.gene005611:CDS 40.0%
CAGAGCGCACAAAACTTTAA+AGG - chr1.1:65288807-65288826 MS.gene005611:intron 40.0%
CATGAACACTTTCAACTGCT+TGG - chr1.1:65288108-65288127 MS.gene005611:CDS 40.0%
CATTTCACCAAACAGCTTCA+AGG - chr1.1:65287032-65287051 MS.gene005611:intron 40.0%
CCAGTGGATATGCCAAAAAT+CGG - chr1.1:65288247-65288266 MS.gene005611:intron 40.0%
CTTGTGGAGCTTGATTTCTA+AGG + chr1.1:65289041-65289060 None:intergenic 40.0%
GAGAGAGAAGAGACTTTCTT+TGG - chr1.1:65289747-65289766 MS.gene005611:intron 40.0%
GAGATATACTACCACTGTTG+CGG + chr1.1:65288651-65288670 None:intergenic 40.0%
GAGGTCAGAATTAACAATGC+AGG - chr1.1:65293328-65293347 MS.gene005611:CDS 40.0%
GCATATGCCCTTATAGCAAA+AGG - chr1.1:65287980-65287999 MS.gene005611:intron 40.0%
GGAATACTTCAGCAGAATGA+AGG - chr1.1:65289992-65290011 MS.gene005611:intron 40.0%
GGGAACTGTCAATAATCACA+TGG - chr1.1:65290675-65290694 MS.gene005611:intron 40.0%
GGGGATAACTCCAATCTTAT+TGG + chr1.1:65290886-65290905 None:intergenic 40.0%
GTAGTAGGGAAATTCATGAC+TGG + chr1.1:65291274-65291293 None:intergenic 40.0%
GTCTCCTATCGTAACGAAAT+CGG - chr1.1:65288540-65288559 MS.gene005611:intron 40.0%
GTTGAGTTCTCTTTGTGCTT+TGG - chr1.1:65287215-65287234 MS.gene005611:CDS 40.0%
TAATCATTCCGGTGTTCTTG+TGG - chr1.1:65287296-65287315 MS.gene005611:intron 40.0%
TACTGACAGAGAACCTAACA+TGG - chr1.1:65289218-65289237 MS.gene005611:intron 40.0%
TAGATCCAAGCTTAGAACCA+AGG + chr1.1:65292691-65292710 None:intergenic 40.0%
TCACATGGTAAAGCTGGAAA+AGG - chr1.1:65290690-65290709 MS.gene005611:intron 40.0%
TCAGGTCCTTAACATCTGTT+GGG + chr1.1:65292894-65292913 None:intergenic 40.0%
TCAGTATAATGCTCTTCCTG+AGG + chr1.1:65288586-65288605 None:intergenic 40.0%
TCTGTGGTACTTAAAACCCA+AGG - chr1.1:65288046-65288065 MS.gene005611:intron 40.0%
TCTTCTCTCTCCTACTCTTA+AGG + chr1.1:65289738-65289757 None:intergenic 40.0%
TCTTTCTGCTGTTCAATGTC+TGG + chr1.1:65289924-65289943 None:intergenic 40.0%
TGACAGCTGTGTCAATTCAA+TGG - chr1.1:65291316-65291335 MS.gene005611:CDS 40.0%
TGAGTTCTCTTTGTGCTTTG+GGG - chr1.1:65287217-65287236 MS.gene005611:CDS 40.0%
TGCACACCTTTACAAGTATC+TGG - chr1.1:65293139-65293158 MS.gene005611:CDS 40.0%
TGCAGCATCATTTCAGATAC+TGG + chr1.1:65291094-65291113 None:intergenic 40.0%
TTAAAGACTTCGGCGAAGAA+TGG - chr1.1:65286983-65287002 MS.gene005611:intron 40.0%
TTATTGCAAGCCCTTAGAGA+GGG - chr1.1:65288412-65288431 MS.gene005611:intron 40.0%
TTGTTGTAAGCCCTCTCTAA+GGG + chr1.1:65288425-65288444 None:intergenic 40.0%
TTTCTTTCCAAACCTGGACT+GGG - chr1.1:65288175-65288194 MS.gene005611:intron 40.0%
! AATTGATGATCGACATGCTC+GGG + chr1.1:65293028-65293047 None:intergenic 40.0%
! ACAGCAGAAAGAAAGGGTTT+TGG - chr1.1:65289932-65289951 MS.gene005611:intron 40.0%
! ACTTTAAAGGGTGACAAGAG+TGG - chr1.1:65288820-65288839 MS.gene005611:intron 40.0%
! AGCAACTATTTCTTCCTCAG+GGG + chr1.1:65290905-65290924 None:intergenic 40.0%
! CATGTCAAGTTTTGCGTAGT+AGG + chr1.1:65291289-65291308 None:intergenic 40.0%
! CTTCAGTCTCTGACTACTTT+TGG - chr1.1:65287177-65287196 MS.gene005611:CDS 40.0%
! GAAAGTGCAACCAAGTTGTT+AGG - chr1.1:65290112-65290131 MS.gene005611:intron 40.0%
! GAAGCAACTATTTCTTCCTC+AGG + chr1.1:65290907-65290926 None:intergenic 40.0%
! GATGGTTTTCTTTCCAAACC+TGG - chr1.1:65288169-65288188 MS.gene005611:intron 40.0%
! GCACACAATATGTTTTCCCT+TGG + chr1.1:65292195-65292214 None:intergenic 40.0%
! TCAACTCTATCTGATGGTGA+TGG - chr1.1:65292916-65292935 MS.gene005611:CDS 40.0%
! TGAACGATTCCTTTTGCGAT+TGG + chr1.1:65286862-65286881 None:intergenic 40.0%
! TGGTTTCAAGTCACCGATAA+CGG - chr1.1:65287003-65287022 MS.gene005611:intron 40.0%
! TTGGATGTTGTTGTGCTGAT+TGG - chr1.1:65290048-65290067 MS.gene005611:intron 40.0%
! TTTGTTGTAAGCCCTCTCTA+AGG + chr1.1:65288426-65288445 None:intergenic 40.0%
! TTTTCTTTCCAAACCTGGAC+TGG - chr1.1:65288174-65288193 MS.gene005611:intron 40.0%
! TTTTGTAAACGGTAGACCAG+TGG - chr1.1:65288231-65288250 MS.gene005611:intron 40.0%
! TTTTTCCCCTCTGAACTTCT+GGG - chr1.1:65290655-65290674 MS.gene005611:intron 40.0%
!! ACAGCATAAGAGGCATTATC+AGG + chr1.1:65288457-65288476 None:intergenic 40.0%
!! ATAGCAAAAGGCGTTCGATT+TGG - chr1.1:65287992-65288011 MS.gene005611:intron 40.0%
!! ATCGAACGCCTTTTGCTATA+AGG + chr1.1:65287991-65288010 None:intergenic 40.0%
!! CAGAGGTTGTTGGTTCAATA+TGG + chr1.1:65290588-65290607 None:intergenic 40.0%
!! GTCCCTACGTTGTTATTTGT+AGG - chr1.1:65287631-65287650 MS.gene005611:intron 40.0%
!! TCGAACGCCTTTTGCTATAA+GGG + chr1.1:65287990-65288009 None:intergenic 40.0%
!! TCTATTGACTTACACGGCTT+TGG - chr1.1:65292305-65292324 MS.gene005611:intron 40.0%
AACATTGCACGAACTCTTGG+AGG + chr1.1:65293000-65293019 None:intergenic 45.0%
AACGTCAAATGTGTCGCAAC+CGG + chr1.1:65287276-65287295 None:intergenic 45.0%
AAGAGAGATTTCGATGCTGG+TGG + chr1.1:65286965-65286984 None:intergenic 45.0%
AAGATTGGAGTTATCCCCTG+AGG - chr1.1:65290888-65290907 MS.gene005611:intron 45.0%
AAGGACAGGCACTTCAGATA+AGG + chr1.1:65289022-65289041 None:intergenic 45.0%
ACAGTTCCCAGAAGTTCAGA+GGG + chr1.1:65290664-65290683 None:intergenic 45.0%
ACATTGCACGAACTCTTGGA+GGG + chr1.1:65292999-65293018 None:intergenic 45.0%
ATCTTCTGACCAGAGGACTT+GGG + chr1.1:65289685-65289704 None:intergenic 45.0%
CAAGTCAACTAAATGCCGCA+TGG + chr1.1:65293294-65293313 None:intergenic 45.0%
CAGAAGTTCAGAGGGGAAAA+AGG + chr1.1:65290656-65290675 None:intergenic 45.0%
CAGGCGATGAACAAATTGGA+GGG + chr1.1:65289648-65289667 None:intergenic 45.0%
CAGTCAAGGATTCCGAAGAT+TGG - chr1.1:65289253-65289272 MS.gene005611:CDS 45.0%
CTTATTGCAAGCCCTTAGAG+AGG - chr1.1:65288411-65288430 MS.gene005611:intron 45.0%
CTTTCTGTTGGGTACTCTTC+AGG - chr1.1:65287958-65287977 MS.gene005611:intron 45.0%
GAACAATCTTTCCAGTTCGG+TGG + chr1.1:65289967-65289986 None:intergenic 45.0%
GAGAACCTAACATGGTACGT+TGG - chr1.1:65289226-65289245 MS.gene005611:intron 45.0%
GATAGGAGACTTCTTCTGAG+AGG + chr1.1:65288530-65288549 None:intergenic 45.0%
GCAAACCAACGTACCATGTT+AGG + chr1.1:65289234-65289253 None:intergenic 45.0%
GGAGAATATCTTCTGACCAG+AGG + chr1.1:65289692-65289711 None:intergenic 45.0%
GTCGAAAATAGCTTAGACGC+CGG - chr1.1:65286937-65286956 MS.gene005611:intron 45.0%
GTTGACAAAGCTTGAGCGAT+AGG - chr1.1:65291641-65291660 MS.gene005611:CDS 45.0%
TATCTTCTGACCAGAGGACT+TGG + chr1.1:65289686-65289705 None:intergenic 45.0%
TCAACTAAATGCCGCATGGT+TGG + chr1.1:65293290-65293309 None:intergenic 45.0%
TCACCATGGAATTGTCCTCA+TGG - chr1.1:65293260-65293279 MS.gene005611:CDS 45.0%
TCCAAGAGTTCGTGCAATGT+TGG - chr1.1:65292999-65293018 MS.gene005611:CDS 45.0%
TCTACCTTCGACTCCAAACA+TGG + chr1.1:65292102-65292121 None:intergenic 45.0%
TCTCAAGGACAGTTGTGAGT+GGG - chr1.1:65288893-65288912 MS.gene005611:intron 45.0%
TCTGAGAGCTGCAAAGTTGA+TGG - chr1.1:65288151-65288170 MS.gene005611:CDS 45.0%
TGAAATGCCGCAACCGTTAT+CGG + chr1.1:65287019-65287038 None:intergenic 45.0%
TGAACCAACAACCTCTGCTT+AGG - chr1.1:65290591-65290610 MS.gene005611:CDS 45.0%
TTAGATTCTCCCAAGTCCTC+TGG - chr1.1:65289673-65289692 MS.gene005611:intron 45.0%
TTCGACGAGTTCTTTAACGG+CGG + chr1.1:65286923-65286942 None:intergenic 45.0%
TTGCAGCAACGTAATCCTGA+TGG - chr1.1:65289150-65289169 MS.gene005611:intron 45.0%
TTGGGAGAATCTAATCGTGC+AGG + chr1.1:65289667-65289686 None:intergenic 45.0%
! AAACAGTCTTCTTTTGCGGC+AGG + chr1.1:65288496-65288515 None:intergenic 45.0%
! AACACCATGTTTGGAGTCGA+AGG - chr1.1:65292095-65292114 MS.gene005611:CDS 45.0%
! CTCTCTAAGGGCTTGCAATA+AGG + chr1.1:65288413-65288432 None:intergenic 45.0%
! CTTTTTCCCCTCTGAACTTC+TGG - chr1.1:65290654-65290673 MS.gene005611:intron 45.0%
! GGAAGTCTAGCTGACTTACA+CGG - chr1.1:65292463-65292482 MS.gene005611:intron 45.0%
! GGAGCTTGATTTCTAAGGAC+AGG + chr1.1:65289036-65289055 None:intergenic 45.0%
!! ACTGGGTAACGGAAGGAATT+TGG - chr1.1:65288192-65288211 MS.gene005611:intron 45.0%
!! CAAACCCTTGGTTCTAAGCT+TGG - chr1.1:65292683-65292702 MS.gene005611:intron 45.0%
!! CTATCTGATGGTGATGGTCA+TGG - chr1.1:65292922-65292941 MS.gene005611:CDS 45.0%
!! CTGGGTAACGGAAGGAATTT+GGG - chr1.1:65288193-65288212 MS.gene005611:intron 45.0%
!! GATGCCGATTTCGTTACGAT+AGG + chr1.1:65288547-65288566 None:intergenic 45.0%
!! TAGTAACGGGTTAGCCACTA+AGG + chr1.1:65289421-65289440 None:intergenic 45.0%
!! TTTCTAAGGCTGATCATCCG+TGG + chr1.1:65291180-65291199 None:intergenic 45.0%
!!! CCGATTTTTGGCATATCCAC+TGG + chr1.1:65288250-65288269 None:intergenic 45.0%
!!! CATATTTTTTTTTATTAAAT+TGG - chr1.1:65290029-65290048 MS.gene005611:intron 5.0%
AACGAGGACGGTGAATGATC+CGG - chr1.1:65287254-65287273 MS.gene005611:CDS 50.0%
ATCAAGCTACCCTGGTCTCA+AGG - chr1.1:65288878-65288897 MS.gene005611:intron 50.0%
CACAACTGTCCTTGAGACCA+GGG + chr1.1:65288890-65288909 None:intergenic 50.0%
CAGTTCCCAGAAGTTCAGAG+GGG + chr1.1:65290663-65290682 None:intergenic 50.0%
CATGGAATTGTCCTCATGGC+AGG - chr1.1:65293264-65293283 MS.gene005611:CDS 50.0%
CGTGCAGGCGATGAACAAAT+TGG + chr1.1:65289652-65289671 None:intergenic 50.0%
CTCAAGGACAGTTGTGAGTG+GGG - chr1.1:65288894-65288913 MS.gene005611:intron 50.0%
CTCACCTAAGCAGAGGTTGT+TGG + chr1.1:65290598-65290617 None:intergenic 50.0%
CTGAGGAATCGCCACATTCA+GGG + chr1.1:65288569-65288588 None:intergenic 50.0%
CTGCCATGAGGACAATTCCA+TGG + chr1.1:65293266-65293285 None:intergenic 50.0%
GAAATCGGCATCCCTGAATG+TGG - chr1.1:65288555-65288574 MS.gene005611:intron 50.0%
GAAGATGATTCAGGCCAAGC+TGG - chr1.1:65292278-65292297 MS.gene005611:intron 50.0%
GACAGTTCCCAGAAGTTCAG+AGG + chr1.1:65290665-65290684 None:intergenic 50.0%
GAGGATCTAAATGCACCACC+TGG - chr1.1:65292035-65292054 MS.gene005611:CDS 50.0%
GCAGGCGATGAACAAATTGG+AGG + chr1.1:65289649-65289668 None:intergenic 50.0%
GCCAACATTGCACGAACTCT+TGG + chr1.1:65293003-65293022 None:intergenic 50.0%
GTCTCAAGGACAGTTGTGAG+TGG - chr1.1:65288892-65288911 MS.gene005611:intron 50.0%
TCAAGGACAGTTGTGAGTGG+GGG - chr1.1:65288895-65288914 MS.gene005611:intron 50.0%
TCACAACTGTCCTTGAGACC+AGG + chr1.1:65288891-65288910 None:intergenic 50.0%
TCACTATACGGCTGCAACTC+TGG - chr1.1:65289887-65289906 MS.gene005611:intron 50.0%
TCATTCCGGTGTTCTTGTGG+CGG - chr1.1:65287299-65287318 MS.gene005611:intron 50.0%
TGGCAGAGCTGAAATCACCA+TGG - chr1.1:65293246-65293265 MS.gene005611:CDS 50.0%
TTTGCGCAATCAAGCTACCC+TGG - chr1.1:65288870-65288889 MS.gene005611:intron 50.0%
TTTGGAAGATGGTTCAGGCC+AGG - chr1.1:65292438-65292457 MS.gene005611:intron 50.0%
TTTGGCTGCACGAACACAAC+TGG - chr1.1:65288010-65288029 MS.gene005611:intron 50.0%
! CAAGTCACCGATAACGGTTG+CGG - chr1.1:65287009-65287028 MS.gene005611:intron 50.0%
! CTAGCTGACTTACACGGCTT+TGG - chr1.1:65292469-65292488 MS.gene005611:intron 50.0%
! CTTTTCCGCCACAAGAACAC+CGG + chr1.1:65287307-65287326 None:intergenic 50.0%
! GAGAGTGGTGGGGGTTTAAT+GGG - chr1.1:65288769-65288788 MS.gene005611:intron 50.0%
! TAGTGAGTTGCCACTTGCCA+CGG - chr1.1:65291160-65291179 MS.gene005611:CDS 50.0%
! TCCAAACCTGGACTGGGTAA+CGG - chr1.1:65288181-65288200 MS.gene005611:intron 50.0%
! TGAGAGTGGTGGGGGTTTAA+TGG - chr1.1:65288768-65288787 MS.gene005611:intron 50.0%
! TTGATTCGTGAGAGTGGTGG+GGG - chr1.1:65288760-65288779 MS.gene005611:intron 50.0%
!! GAAGGGTTGATTCGTGAGAG+TGG - chr1.1:65288754-65288773 MS.gene005611:intron 50.0%
!! GGTACGTTGGTTTGCAGTCA+AGG - chr1.1:65289239-65289258 MS.gene005611:intron 50.0%
!! GGTTGATTCGTGAGAGTGGT+GGG - chr1.1:65288758-65288777 MS.gene005611:intron 50.0%
!! GTTGATTCGTGAGAGTGGTG+GGG - chr1.1:65288759-65288778 MS.gene005611:intron 50.0%
AGTCAGCTAGACTTCCAGCC+TGG + chr1.1:65292459-65292478 None:intergenic 55.0%
CCTGAATGTGGCGATTCCTC+AGG - chr1.1:65288567-65288586 MS.gene005611:intron 55.0%
CCTGAGGAATCGCCACATTC+AGG + chr1.1:65288570-65288589 None:intergenic 55.0%
GACGAGTTCTTTAACGGCGG+AGG + chr1.1:65286920-65286939 None:intergenic 55.0%
GAGGTCGAGGATGACTTGAC+CGG + chr1.1:65286896-65286915 None:intergenic 55.0%
GTTCTTTAACGGCGGAGGAG+AGG + chr1.1:65286915-65286934 None:intergenic 55.0%
TCCGTTACCCAGTCCAGGTT+TGG + chr1.1:65288185-65288204 None:intergenic 55.0%
TGGAGGGCAGACTGAATCTG+AGG + chr1.1:65292983-65293002 None:intergenic 55.0%
TTCCTTCCGTTACCCAGTCC+AGG + chr1.1:65288190-65288209 None:intergenic 55.0%
! CTGCTGTGGTTGATGCCATC+AGG + chr1.1:65289168-65289187 None:intergenic 55.0%
! TGGTGGGGGTTTAATGGGCA+AGG - chr1.1:65288774-65288793 MS.gene005611:intron 55.0%
!! AACCTGGACTGGGTAACGGA+AGG - chr1.1:65288185-65288204 MS.gene005611:intron 55.0%
!! GGGTTGATTCGTGAGAGTGG+TGG - chr1.1:65288757-65288776 MS.gene005611:intron 55.0%
CTCATGGCAGGCCAACCATG+CGG - chr1.1:65293276-65293295 MS.gene005611:CDS 60.0%
GAAGATGGTTCAGGCCAGGC+TGG - chr1.1:65292442-65292461 MS.gene005611:intron 60.0%
GGCTGATCATCCGTGGCAAG+TGG + chr1.1:65291173-65291192 None:intergenic 60.0%
! GATTTCGATGCTGGTGGCGC+CGG + chr1.1:65286959-65286978 None:intergenic 60.0%
TAACGGCGGAGGAGAGGTCG+AGG + chr1.1:65286909-65286928 None:intergenic 65.0%
!! CGCATGGTTGGCCTGCCATG+AGG + chr1.1:65293278-65293297 None:intergenic 65.0%
GGCAGCAGCAGCCACCGAAC+TGG - chr1.1:65289953-65289972 MS.gene005611:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 65286832 65293355 65286832 ID=MS.gene005611
chr1.1 mRNA 65286832 65293355 65286832 ID=MS.gene005611.t1;Parent=MS.gene005611
chr1.1 exon 65293134 65293355 65293134 ID=MS.gene005611.t1.exon1;Parent=MS.gene005611.t1
chr1.1 CDS 65293134 65293355 65293134 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65292735 65293058 65292735 ID=MS.gene005611.t1.exon2;Parent=MS.gene005611.t1
chr1.1 CDS 65292735 65293058 65292735 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65290948 65292207 65290948 ID=MS.gene005611.t1.exon3;Parent=MS.gene005611.t1
chr1.1 CDS 65290948 65292207 65290948 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65290375 65290643 65290375 ID=MS.gene005611.t1.exon4;Parent=MS.gene005611.t1
chr1.1 CDS 65290375 65290643 65290375 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65290174 65290300 65290174 ID=MS.gene005611.t1.exon5;Parent=MS.gene005611.t1
chr1.1 CDS 65290174 65290300 65290174 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65289801 65289869 65289801 ID=MS.gene005611.t1.exon6;Parent=MS.gene005611.t1
chr1.1 CDS 65289801 65289869 65289801 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65289575 65289648 65289575 ID=MS.gene005611.t1.exon7;Parent=MS.gene005611.t1
chr1.1 CDS 65289575 65289648 65289575 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65289240 65289305 65289240 ID=MS.gene005611.t1.exon8;Parent=MS.gene005611.t1
chr1.1 CDS 65289240 65289305 65289240 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65288071 65288174 65288071 ID=MS.gene005611.t1.exon9;Parent=MS.gene005611.t1
chr1.1 CDS 65288071 65288174 65288071 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65287101 65287288 65287101 ID=MS.gene005611.t1.exon10;Parent=MS.gene005611.t1
chr1.1 CDS 65287101 65287288 65287101 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
chr1.1 exon 65286832 65286954 65286832 ID=MS.gene005611.t1.exon11;Parent=MS.gene005611.t1
chr1.1 CDS 65286832 65286954 65286832 ID=cds.MS.gene005611.t1;Parent=MS.gene005611.t1
Gene Sequence

>MS.gene005611

ATGCCGATTGAATCGCAAATCATCAAACCAATCGCAAAAGGAATCGTTCACAGAATCTGTTCCGGTCAAGTCATCCTCGACCTCTCCTCCGCCGTTAAAGAACTCGTCGAAAATAGCTTAGACGCCGGCGCCACCAGCATCGAAATCTCTCTTAAAGACTTCGGCGAAGAATGGTTTCAAGTCACCGATAACGGTTGCGGCATTTCACCAAACAGCTTCAAGGTATTCTACTACCCCTTTAAAAATGTAGTATTAGGGTTTTGAGCTTGTTTAATATTTTGTTTGAAATGATTTCAGGTTCTTGGACTTAAGCATCATACTTCGAAACTATCAGAGTTTCATGATCTTCAGTCTCTGACTACTTTTGGATTTAGAGGTGAGGCGTTGAGTTCTCTTTGTGCTTTGGGGAATTTGACAATTGAAACGAGGACGGTGAATGATCCGGTTGCGACACATTTGACGTTTAATCATTCCGGTGTTCTTGTGGCGGAAAAGAAAATTGCGCGACAAATTGGAACGACTGTGACGGTTAAGAAGTTGTTCTCAAGTCTTCCTGTAAGAAGCAAAGAGTTTAAGCGGAATATACGTAAGGAATATGGAAAGTTGGTTTCTCTCTTGAATGTGAGTGATTGTGTGTTTAGTTATTCTATGATGTTCTATGTTTTCATAGTCGCGAATGTTTTCCATTTGAGTAAATACCTAAATTGGTACTTGAAATTGTAAGGCTGTATCAATCTAGTGCTTTTTATTATTGATATTCCTAAACGATCTAAGAAATTACAAAATTTTAATCAAATTTGTCCCTACGTTGTTATTTGTAGGACTATAATGACATTAGGTTGGTAATATCAGGAATTAATTTGAAATTTAGTGCAAAATGTCAGAGATGCATTGATAACCTATACATACAAATCGGTGAAGTTGATTAGCATTATGCAATTTCGGTGATCATTTAGAATATTAATAATGTGGGGGACATGTTGTTATTACTTTCTACAATTTTAAGGACTAATATCCAATTACTCCATTCTATTCCTATTGGGATTTATTTTTTGTTCGTTTTTCTGCTGAATTCTTGCCTTTTTTATTCCTGTTTCACTGAGTTTGTTAATAAGTATGATATATTCTTTCTGTTGGGTACTCTTCAGGCATATGCCCTTATAGCAAAAGGCGTTCGATTTGGCTGCACGAACACAACTGGCAAAAATGTAAAATCTGTGGTACTTAAAACCCAAGGAAATGATTCTCTAAAAGATAACATCATAACAGTGCTTGGCATGAACACTTTCAACTGCTTGGAGCCCATGTCATTATGTATATCTGAGAGCTGCAAAGTTGATGGTTTTCTTTCCAAACCTGGACTGGGTAACGGAAGGAATTTGGGAGATAGACAGTATTTTTTTGTAAACGGTAGACCAGTGGATATGCCAAAAATCGGAAAACTTGTGAATGAGTTATATAGAAGTGCAAACTCTAAACAATATCCCATTGCAATCATGAATTTTACGGTTCCAACAAAAGCATATGATGTCAATGTAACTCCTGATAAAAGGAAAATATTTTTTTCTGAAGAAACTTCCTTATTGCAAGCCCTTAGAGAGGGCTTACAACAAATTTATTCTCCTGATAATGCCTCTTATGCTGTCAATGAATTTATGCGGCCTGCCGCAAAAGAAGACTGTTTTGAGTTGCGTTCCTCTCAGAAGAAGTCTCCTATCGTAACGAAATCGGCATCCCTGAATGTGGCGATTCCTCAGGAAGAGCATTATACTGAGTTCAATACTGCTAGTATTTCTCGGGATAAGAATAATTCTGACCGCAACAGTGGTAGTATATCTCTCAATGAGCATAAGGAGAAACACACTACCGATTCTAATAATGCTTCTGAATCTGATGATGGCGATCTATTCTCACATGTTGAAGAAGGGTTGATTCGTGAGAGTGGTGGGGGTTTAATGGGCAAGGAGTTCACACTCAGAGCGCACAAAACTTTAAAGGGTGACAAGAGTGGAAGACAGCTGACATCTACTCATATTGCTTTGCGCAATCAAGCTACCCTGGTCTCAAGGACAGTTGTGAGTGGGGGCTCTTCTGATAAATATTCTTCTGATTCATCAAGACATGTTCAGTCAACCCTTAACAATTTTGTTGCTGTAAGTAAAAGAAAACGCGATGACATCATTACAGCCTTATCTGAAGTGCCTGTCCTTAGAAATCAAGCTCCACAAGTAAATACTGAAACCAATGACCTGATAACAAGATCATATCTTCATTTGGACCAAATTAATGAAACTTCTAAGCCAAGTGAGATTGAAAATTTGCAGCAACGTAATCCTGATGGCATCAACCACAGCAGTGTAAATTCACTGTCTTTTAGAGAAGACTCTACTGACAGAGAACCTAACATGGTACGTTGGTTTGCAGTCAAGGATTCCGAAGATTGGTTTCAATCGCTAAATTTCATATATCTACACTTACAGTTCTCTAAGCATAGTTTTGCATGCTATTGTACTATGTTTTGATTTATAGAATTATTTGACATGACATTTTTTGAAATTTGTGTTTACGATCATTTAAGTTGAAGTTCCTTAGTGGCTAACCCGTTACTAAATCAGAAAATGATATTAATGTCTTTAGCTTGTATTCATTGAGAAGTAAAAGTAAAAATTGCCACTTTATCTTTGTTTCATACTTGCATATGATGTTTTGCAGAAACTACATCAAGAGAATAAAACACATCTAGCTGATACAGCATCAGTTACACCATCTAGCAACAATCTGATAAATACTACAGAGCATGTTTTGGTCTCAGACCCTCCAATTTGTTCATCGCCTGCACGATTAGATTCTCCCAAGTCCTCTGGTCAGAAGATATTCTCCAACATGCAATTTTCTTTTCAAGACCTTAAGAGTAGGAGAGAGAAGAGACTTTCTTTGGTACAATCCAGCAAATACAGATATGGAAAAGCTAATGGCAAAAGGTTTATATTTTCGTACTCTCCTTATAAAGTAGGAAAATCATATATATGCTTACTCTTTCTCATAATTTTTTTAGTCACTATACGGCTGCAACTCTGGAGCTTTCACAGCCAGACATTGAACAGCAGAAAGAAAGGGTTTTGGCAGCAGCAGCCACCGAACTGGAAAGATTGTTCAAGAAGGAATACTTCAGCAGAATGAAGGTTGTTAGTATGATTCATATTTTTTTTTATTAAATTGGATGTTGTTGTGCTGATTGGTTGTCCAGATGTCAATACTCAATGCTATTTTAGTAAGTGGGGAAAGTGCAACCAAGTTGTTAGGTTTTTCTAAGTTTTTTTGTCCACCATAAAACCAAATCAATGTTTTTGGAATACAAAATCCGCATATCTAATCCATCATACTAAAATCATATTTAAATCTTTAGCTGCTCAATTATACCTACAATTTCAGATTAAATATATCATGTATTCAAAGGCTTATTACTTTGATATTATGTTTTAACAGGTGATTGGACAATTCAATCTTGGATTTATCATTGGTAAATTGGATCAAGATTTATTCATTGTGGATCAGGTAACTTCCACTATGTTTTTGAAACTACAGATTCTGCAGTTTCTTCCACCATCCTGTAGAATGATTAATCCATATAAATGCATTCTTTTGCTTTATTTTATATTTCTTTTAAAAAAAAACATGATTTGTGATGGAGAATAATCTATTTTCAGCATGCTGCTGACGAGAAATACAATTTTGAGTGTCTGTCCCAATCAACCATATTGAACCAACAACCTCTGCTTAGGTGAGAACTTATTCTTTTACGATCATTATACATAAGTATTCCTTTTTCCCCTCTGAACTTCTGGGAACTGTCAATAATCACATGGTAAAGCTGGAAAAGGAAATTACTTATTCTGCTGCAAAGTTTTGGTGTAGATAAATGACTTGTTGAGTTCAAAGTTACAAAGGATGTTTAGAGTATAAGTTTTGATTGTAAAAGCACAAGCGTAATTTTATCCTTTCTTTATTTGTTCATGATCTTAATTTTACTAATAAAAATTGCATATGTAGGCCAATAAGATTGGAGTTATCCCCTGAGGAAGAAATAGTTGCTTCAATTCACATGGACATAATCAGGTATAACTAGAGCCATATTTATCAAGCGGTGATATATTGATTCTCCATATTTTGTGTTATTGTCAGAAACTATATTTCATCAACAGGATTCTAATATCAATCTTGCATCATTACAGACTGTTTGTGTTTCTAGTTTACTATAGCCAGTATCTGAAATGATGCTGCACCATGATCTCTTTATTCACTTTCTCATTTAACTAGTATGATTGTCATAGTGAGTTGCCACTTGCCACGGATGATCAGCCTTAGAAAATGAACATATTGATTATCTTTTTGTGTATTTAAGGATCACTTGAAGTAATAATTAGTGTCACCCTAATGCACCAGTCATGAATTTCCCTACTACGCAAAACTTGACATGACTGACTTGACAGCTGTGTCAATTCAATGGCTGACCTGTGCTGCTTTAATTGATAATGAATAAATAATTTTAATAATAATTCAATGATATATTGATATTGAAAAAAAAACATGCATATGTATATTGGATTTAGTATATGTTTGAAATCATTACTTGGATCCTTAATCATGTGAAGATGCAGATATAAGATTTTATATATTTAAACCACCAAATAACTTGTTGAATTTGATTTCATATGATGTTTTTGGAAAGTATGATGTTCGATAATCTTAAGATGCATTTGTGACGTGCTTACTGCTGAGAAAAGAGAATACATCTATTAAAAAGTTCAAGTTGACAAAGCTTGAGCGATAGGCATGTAGAAACAAAAACCAAAGCTGTGAAGTTTGAACTTGAGAGCCCTCAAATTGTTCAACTAGTTGTTTCCTGTAAGCTAATGTCTTCAACAATGGTTGTGTGTTGCGTCAGCTATAAATGCCACATGCACATTAGAAATTAAAACATTTGCATAATTTATGAAAGGTTGTTGGAAATGCCATTATATTTGATTCAGTCACTCTTACAGTAAGATACTTTTTTTCCGTGGGGGTTATCTTTAAAATTGAGTTCAATGTTCTAGATCCAATATTTTATGCTTTAGTTGCGTTTTTTTGCATCTTTATGGTTGTAGTTAGTAACATGAATTTGCATTATATCCATTTCAGGAAGAATGGATTTACTTTGGAAGAGGATCTAAATGCACCACCTGGATGCCGTTATAAATTAAAGTCTGTCCCCTACAGTAAAAACACCATGTTTGGAGTCGAAGGTAGAACCTTTGAATTTTATGGATTCTATCTGTGATTAATTTAATGATTCTGTTGGTTTATATAGTCATGATCGACCAAGGGAAAACATATTGTGTGCATTGGATATATGATTCTCTGTGCATGATACTCTTTTTAGTTTTCAATTTTTGCATTCATTTCGGAAGATGATTCAGGCCAAGCTGGAAAGTCTATTGACTTACACGGCTTTGGTTGATTTCAAATGTCATTTGATATTTGATTGGATATGTGATTCTTTTGTGCATTGGATACATGCTTTTCTGTGCATGATACTCTTTTTAGTTTTCAATTTTTGCATTTATTTTGGAAGATGGTTCAGGCCAGGCTGGAAGTCTAGCTGACTTACACGGCTTTGGTTGATTTTAGATGCCATTCACATAACCTTGTATCAAGATGATGGTAGAAAATGGTGTCTTATTGATAATTTAGAAGACAAACAACAAATTTATTACACTGAAATATTGGAAATTCTGTATTAGAAACGAGGACCAGTGATGTTACAAGAAACACACCAGAAACGAAATAAGAAATGAGAAAATGTTTCAAACAAACCCTTGGTTCTAAGCTTGGATCTAAAGATTGGCATATACATATTTGAATCTTGTGAATGGCAAGGGAACTTTTTTACTTAAACATTCTTTTTTGAGATTTTGCTTAATCACTGTGAATCAATTGCGCATAGAATGGTTATTGAAATAAAGATTATTATTAAGAAATAAAAATTGCATCGAGTGATTGATGATAAGCATTTTTCTCCCAACAGATGTTAAGGACCTGATTTCAACTCTATCTGATGGTGATGGTCATGGAGAATGTTCCATAATTGGTAGTTATAGACAAGATTCCTCAGATTCAGTCTGCCCTCCAAGAGTTCGTGCAATGTTGGCATCCCGAGCATGTCGATCATCAATTATGATTGGTGATGCACTTGGAAGAAATGAAATGCAGAAGGTAGCAAAACACATTACTTTTAGCATTGCCCCTCGCCTTATTTTATAACACGTGCACACCTTTACAAGTATCTGGTTTAGTAGAACAATAAATGTAAGGAAATTGAATTTTAGACTGAGTTTTTTAGTTTACTCTAATTGTTTCAGATACTTGAGCATTTGGCAGAGCTGAAATCACCATGGAATTGTCCTCATGGCAGGCCAACCATGCGGCATTTAGTTGACTTGACGAAAATTCATAAGAGGTCAGAATTAACAATGCAGGAGTAA
Protein sequence

>MS.gene005611.t1

MPIESQIIKPIAKGIVHRICSGQVILDLSSAVKELVENSLDAGATSIEISLKDFGEEWFQVTDNGCGISPNSFKVLGLKHHTSKLSEFHDLQSLTTFGFRGEALSSLCALGNLTIETRTVNDPVATHLTFNHSGVLVAEKKIARQIGTTVTVKKLFSSLPVRSKEFKRNIRKEYGKLVSLLNAYALIAKGVRFGCTNTTGKNVKSVVLKTQGNDSLKDNIITVLGMNTFNCLEPMSLCISESCKVDGFLSKPGLGNGRNLGDRQYFFVNGRPVDMPKIGKLVNELYRSANSKQYPIAIMNFTVPTKAYDVNVTPDKRKIFFSEETSLLQALREGLQQIYSPDNASYAVNEFMRPAAKEDCFELRSSQKKSPIVTKSASLNVAIPQEEHYTEFNTASISRDKNNSDRNSGSISLNEHKEKHTTDSNNASESDDGDLFSHVEEGLIRESGGGLMGKEFTLRAHKTLKGDKSGRQLTSTHIALRNQATLVSRTVVSGGSSDKYSSDSSRHVQSTLNNFVAVSKRKRDDIITALSEVPVLRNQAPQVNTETNDLITRSYLHLDQINETSKPSEIENLQQRNPDGINHSSVNSLSFREDSTDREPNMKLHQENKTHLADTASVTPSSNNLINTTEHVLVSDPPICSSPARLDSPKSSGQKIFSNMQFSFQDLKSRREKRLSLVQSSKYRYGKANGKSHYTAATLELSQPDIEQQKERVLAAAATELERLFKKEYFSRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFECLSQSTILNQQPLLRPIRLELSPEEEIVASIHMDIIRKNGFTLEEDLNAPPGCRYKLKSVPYSKNTMFGVEDVKDLISTLSDGDGHGECSIIGSYRQDSSDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKIHKRSELTMQE