Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010265.t1 | XP_003614968.1 | 87.8 | 648 | 20 | 5 | 1 | 595 | 14 | 655 | 9.60E-305 | 1055.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010265.t1 | Q9FEP7 | 70.0 | 641 | 133 | 5 | 7 | 594 | 21 | 655 | 1.1e-245 | 850.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010265.t1 | G7KA24 | 87.8 | 648 | 20 | 5 | 1 | 595 | 14 | 655 | 6.9e-305 | 1055.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89102 | MS.gene010265 | PPI |
| MS.gene010265 | MS.gene053674 | PPI |
| MS.gene010265 | MS.gene062785 | PPI |
| MS.gene010265 | MS.gene36287 | PPI |
| MS.gene010265 | MS.gene33359 | PPI |
| MS.gene010265 | MS.gene30731 | PPI |
| MS.gene010265 | MS.gene035937 | PPI |
| MS.gene33360 | MS.gene010265 | PPI |
| MS.gene29852 | MS.gene010265 | PPI |
| MS.gene033981 | MS.gene010265 | PPI |
| MS.gene010265 | MS.gene57599 | PPI |
| MS.gene053673 | MS.gene010265 | PPI |
| MS.gene35622 | MS.gene010265 | PPI |
| MS.gene010265 | MS.gene010268 | PPI |
| MS.gene010265 | MS.gene33361 | PPI |
| MS.gene29013 | MS.gene010265 | PPI |
| MS.gene61200 | MS.gene010265 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010265.t1 | MTR_5g061880 | 88.426 | 648 | 16 | 5 | 1 | 595 | 14 | 655 | 0.0 | 1129 |
| MS.gene010265.t1 | MTR_3g073780 | 75.385 | 650 | 98 | 7 | 1 | 595 | 17 | 659 | 0.0 | 934 |
| MS.gene010265.t1 | MTR_3g073780 | 75.390 | 577 | 80 | 7 | 1 | 522 | 17 | 586 | 0.0 | 823 |
| MS.gene010265.t1 | MTR_2g008470 | 63.820 | 644 | 169 | 8 | 4 | 590 | 18 | 654 | 0.0 | 798 |
| MS.gene010265.t1 | MTR_2g008470 | 63.820 | 644 | 169 | 8 | 4 | 590 | 37 | 673 | 0.0 | 797 |
| MS.gene010265.t1 | MTR_3g073780 | 75.228 | 549 | 75 | 6 | 1 | 494 | 17 | 559 | 0.0 | 781 |
| MS.gene010265.t1 | MTR_1g071530 | 49.128 | 631 | 263 | 5 | 17 | 595 | 21 | 645 | 0.0 | 605 |
| MS.gene010265.t1 | MTR_7g095430 | 47.596 | 624 | 269 | 5 | 17 | 588 | 18 | 635 | 0.0 | 593 |
| MS.gene010265.t1 | MTR_2g102243 | 48.336 | 631 | 268 | 5 | 17 | 595 | 23 | 647 | 0.0 | 591 |
| MS.gene010265.t1 | MTR_4g084620 | 47.132 | 645 | 279 | 8 | 1 | 591 | 1 | 637 | 0.0 | 583 |
| MS.gene010265.t1 | MTR_3g087740 | 49.355 | 620 | 249 | 10 | 23 | 587 | 40 | 649 | 0.0 | 580 |
| MS.gene010265.t1 | MTR_5g061860 | 48.107 | 634 | 256 | 9 | 22 | 592 | 29 | 652 | 0.0 | 578 |
| MS.gene010265.t1 | MTR_4g011970 | 46.910 | 631 | 277 | 5 | 17 | 595 | 30 | 654 | 0.0 | 569 |
| MS.gene010265.t1 | MTR_3g073730 | 48.764 | 607 | 247 | 7 | 47 | 595 | 60 | 660 | 0.0 | 568 |
| MS.gene010265.t1 | MTR_4g084640 | 47.476 | 634 | 267 | 7 | 17 | 595 | 22 | 644 | 0.0 | 564 |
| MS.gene010265.t1 | MTR_7g095430 | 48.029 | 558 | 232 | 5 | 17 | 522 | 18 | 569 | 0.0 | 536 |
| MS.gene010265.t1 | MTR_2g102243 | 48.566 | 558 | 229 | 5 | 17 | 522 | 23 | 574 | 0.0 | 533 |
| MS.gene010265.t1 | MTR_5g061860 | 49.346 | 535 | 200 | 7 | 22 | 494 | 29 | 554 | 1.60e-173 | 504 |
| MS.gene010265.t1 | MTR_6g086170 | 38.863 | 633 | 324 | 6 | 12 | 591 | 5 | 627 | 8.40e-161 | 474 |
| MS.gene010265.t1 | MTR_3g087730 | 37.560 | 623 | 312 | 14 | 34 | 592 | 49 | 658 | 7.14e-136 | 411 |
| MS.gene010265.t1 | MTR_7g022870 | 33.953 | 592 | 329 | 11 | 46 | 587 | 57 | 636 | 3.24e-107 | 338 |
| MS.gene010265.t1 | MTR_7g022870 | 34.156 | 527 | 285 | 11 | 46 | 522 | 57 | 571 | 7.43e-90 | 289 |
| MS.gene010265.t1 | MTR_6g024420 | 46.491 | 114 | 47 | 2 | 191 | 304 | 67 | 166 | 1.76e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010265.t1 | AT1G22150 | 70.827 | 641 | 128 | 6 | 7 | 594 | 21 | 655 | 0.0 | 866 |
| MS.gene010265.t1 | AT1G22150 | 70.827 | 641 | 128 | 6 | 7 | 594 | 21 | 655 | 0.0 | 866 |
| MS.gene010265.t1 | AT1G22150 | 70.827 | 641 | 128 | 6 | 7 | 594 | 21 | 655 | 0.0 | 866 |
| MS.gene010265.t1 | AT1G78000 | 69.764 | 635 | 133 | 6 | 13 | 594 | 24 | 652 | 0.0 | 844 |
| MS.gene010265.t1 | AT1G78000 | 69.764 | 635 | 133 | 6 | 13 | 594 | 24 | 652 | 0.0 | 844 |
| MS.gene010265.t1 | AT1G78000 | 69.764 | 635 | 133 | 6 | 13 | 594 | 24 | 652 | 0.0 | 844 |
| MS.gene010265.t1 | AT4G08620 | 63.867 | 631 | 169 | 5 | 17 | 594 | 23 | 647 | 0.0 | 782 |
| MS.gene010265.t1 | AT1G78000 | 70.000 | 590 | 118 | 6 | 13 | 549 | 24 | 607 | 0.0 | 781 |
| MS.gene010265.t1 | AT1G22150 | 70.299 | 569 | 110 | 6 | 7 | 522 | 21 | 583 | 0.0 | 750 |
| MS.gene010265.t1 | AT1G78000 | 69.627 | 563 | 112 | 6 | 13 | 522 | 24 | 580 | 0.0 | 733 |
| MS.gene010265.t1 | AT3G51895 | 47.671 | 644 | 275 | 7 | 1 | 588 | 46 | 683 | 0.0 | 612 |
| MS.gene010265.t1 | AT3G51895 | 47.671 | 644 | 275 | 7 | 1 | 588 | 1 | 638 | 0.0 | 612 |
| MS.gene010265.t1 | AT1G78000 | 73.034 | 445 | 75 | 3 | 123 | 522 | 1 | 445 | 0.0 | 598 |
| MS.gene010265.t1 | AT3G15990 | 47.276 | 624 | 271 | 5 | 17 | 588 | 27 | 644 | 0.0 | 587 |
| MS.gene010265.t1 | AT1G78000 | 66.946 | 478 | 99 | 6 | 13 | 437 | 24 | 495 | 0.0 | 583 |
| MS.gene010265.t1 | AT1G23090 | 46.571 | 627 | 276 | 6 | 17 | 590 | 4 | 624 | 0.0 | 559 |
| MS.gene010265.t1 | AT5G10180 | 47.900 | 643 | 268 | 10 | 5 | 587 | 37 | 672 | 0.0 | 554 |
| MS.gene010265.t1 | AT4G02700 | 45.024 | 633 | 288 | 7 | 8 | 587 | 2 | 627 | 0.0 | 538 |
| MS.gene010265.t1 | AT1G77990 | 47.332 | 581 | 245 | 6 | 59 | 584 | 89 | 663 | 1.48e-179 | 523 |
| MS.gene010265.t1 | AT5G19600 | 39.370 | 635 | 313 | 9 | 8 | 587 | 6 | 623 | 2.76e-154 | 457 |
| MS.gene010265.t1 | AT1G23090 | 49.561 | 456 | 208 | 2 | 157 | 590 | 37 | 492 | 1.28e-153 | 451 |
| MS.gene010265.t1 | AT1G23090 | 49.561 | 456 | 208 | 2 | 157 | 590 | 37 | 492 | 1.28e-153 | 451 |
| MS.gene010265.t1 | AT1G23090 | 49.561 | 456 | 208 | 2 | 157 | 590 | 37 | 492 | 1.28e-153 | 451 |
| MS.gene010265.t1 | AT5G13550 | 33.775 | 604 | 323 | 11 | 45 | 587 | 55 | 642 | 1.42e-107 | 338 |
| MS.gene010265.t1 | AT3G12520 | 32.273 | 629 | 346 | 12 | 9 | 587 | 15 | 613 | 1.91e-105 | 332 |
| MS.gene010265.t1 | AT3G12520 | 32.432 | 629 | 345 | 13 | 9 | 587 | 31 | 629 | 2.21e-105 | 332 |
| MS.gene010265.t1 | AT3G12520 | 32.210 | 534 | 285 | 10 | 9 | 494 | 31 | 535 | 3.02e-86 | 278 |
Find 145 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTCAAAGCTTGCAAATT+TGG | 0.134167 | 5.4:+48533002 | MS.gene010265:CDS |
| TTACCTTTCTTTAACATAAT+TGG | 0.142103 | 5.4:-48535359 | None:intergenic |
| CGCTGCAATAGTCGGATTTA+TGG | 0.166264 | 5.4:+48533615 | MS.gene010265:CDS |
| TCAAACTTTGCAAACTTTCT+TGG | 0.182465 | 5.4:+48536816 | MS.gene010265:CDS |
| CTTTCTTGAGCAGCTTGTTC+TGG | 0.237374 | 5.4:+48536755 | MS.gene010265:intron |
| CCGGGAACCCTTGTGGCTTC+TGG | 0.244498 | 5.4:-48535292 | None:intergenic |
| TACCCTCCAAAAGTTAATTC+TGG | 0.255929 | 5.4:+48532807 | MS.gene010265:CDS |
| CAATTCCCAGAATTAACTTT+TGG | 0.286399 | 5.4:-48532813 | None:intergenic |
| CGACTATTGCAGCGTGTAAT+AGG | 0.286627 | 5.4:-48533606 | None:intergenic |
| AGAAGGGCCAGAAGTTCTTT+TGG | 0.294844 | 5.4:+48533997 | MS.gene010265:CDS |
| GCCATATTCCTTATTATTGC+TGG | 0.296925 | 5.4:+48532838 | MS.gene010265:CDS |
| CCAACTAAGTATAGGGAATA+TGG | 0.299920 | 5.4:-48532773 | None:intergenic |
| AATAGCTCTTCAACAGCTTA+AGG | 0.302422 | 5.4:+48533654 | MS.gene010265:CDS |
| AAGGCCCCGAACTGCTATTC+TGG | 0.303809 | 5.4:+48535225 | MS.gene010265:CDS |
| GGCCGTGGTTTCTCTCTTGT+TGG | 0.307403 | 5.4:+48533209 | MS.gene010265:CDS |
| ACCAGCAATAATAAGGAATA+TGG | 0.308116 | 5.4:-48532839 | None:intergenic |
| ATACACTCCAAATGCAATTC+TGG | 0.309038 | 5.4:+48534915 | MS.gene010265:CDS |
| TACTCAGTTGGATGTGTATT+CGG | 0.309165 | 5.4:-48533258 | None:intergenic |
| GCCGTGGTTTCTCTCTTGTT+GGG | 0.313630 | 5.4:+48533210 | MS.gene010265:CDS |
| CATATTCCCTATACTTAGTT+GGG | 0.322705 | 5.4:+48532774 | MS.gene010265:CDS |
| CTGGAACCCAAAAGAACTTC+TGG | 0.328476 | 5.4:-48534004 | None:intergenic |
| CCTTGTGCGTGTATGGTTCC+TGG | 0.330002 | 5.4:-48532624 | None:intergenic |
| AAAGTCCCGTAAGTTAATTC+TGG | 0.338679 | 5.4:+48532741 | MS.gene010265:CDS |
| GACTTCTAAATAACTCTTCC+AGG | 0.340225 | 5.4:-48536269 | None:intergenic |
| TTGTGGCTTCTGGATATTGC+TGG | 0.340906 | 5.4:-48535282 | None:intergenic |
| TAGTTAAACCAGCAATAATA+AGG | 0.352013 | 5.4:-48532846 | None:intergenic |
| ATGAAAGACTATCAACTTGA+TGG | 0.352997 | 5.4:+48534627 | MS.gene010265:CDS |
| TTCTTCCCCAACTAAGTATA+GGG | 0.354633 | 5.4:-48532780 | None:intergenic |
| CTTCCCCAGAATAGCAGTTC+GGG | 0.364574 | 5.4:-48535230 | None:intergenic |
| CCAGAAGCCACAAGGGTTCC+CGG | 0.366444 | 5.4:+48535292 | MS.gene010265:CDS |
| TCTTCAAAAGAGAGAAGTTC+AGG | 0.372341 | 5.4:+48536290 | MS.gene010265:CDS |
| CTTGCGAAAGGCGTTAGAAT+TGG | 0.374842 | 5.4:+48534453 | MS.gene010265:CDS |
| CAAGGGTCTTCAGCTAGCTT+TGG | 0.377885 | 5.4:-48536888 | None:intergenic |
| GCTGCAATAGTCGGATTTAT+GGG | 0.384000 | 5.4:+48533616 | MS.gene010265:CDS |
| TGCGATTGGGCCAGTGGCCG+TGG | 0.387733 | 5.4:+48533194 | MS.gene010265:CDS |
| ATAGCTCTTCAACAGCTTAA+GGG | 0.388577 | 5.4:+48533655 | MS.gene010265:CDS |
| GGGGCCTTGTGACTTGTAAT+AGG | 0.389141 | 5.4:-48535210 | None:intergenic |
| CAACAGCTTAAGGGTTTCCT+TGG | 0.394046 | 5.4:+48533664 | MS.gene010265:CDS |
| CCATATTCCCTATACTTAGT+TGG | 0.401021 | 5.4:+48532773 | MS.gene010265:CDS |
| ATTGAGGCCAGAATTGCATT+TGG | 0.401265 | 5.4:-48534922 | None:intergenic |
| TCCAAAACAAAACCTCTTCA+AGG | 0.403824 | 5.4:+48532657 | MS.gene010265:CDS |
| TTTCTATAAACAGTTGTCCT+AGG | 0.415898 | 5.4:-48535256 | None:intergenic |
| GATATCAATGGAGCAATTGC+TGG | 0.416195 | 5.4:-48534023 | None:intergenic |
| GTTCTTCCCCAACTAAGTAT+AGG | 0.426410 | 5.4:-48532781 | None:intergenic |
| TCGGTCAGCAATAAATTTCA+TGG | 0.428079 | 5.4:+48534810 | MS.gene010265:CDS |
| CAATTCCCAGAATTAACTTA+CGG | 0.430079 | 5.4:-48532747 | None:intergenic |
| ACTCCAACCTTGTGCGTGTA+TGG | 0.432344 | 5.4:-48532631 | None:intergenic |
| AACAAAGAAATGATGGCATT+AGG | 0.432536 | 5.4:+48534651 | MS.gene010265:CDS |
| AATTCCCAGAATTAACTTAC+GGG | 0.433403 | 5.4:-48532746 | None:intergenic |
| TATCAGGAAGCCATAGCAAT+TGG | 0.433820 | 5.4:+48534588 | MS.gene010265:intron |
| ACCCTCCAAAAGTTAATTCT+GGG | 0.438852 | 5.4:+48532808 | MS.gene010265:CDS |
| AGGCCCCGAACTGCTATTCT+GGG | 0.438860 | 5.4:+48535226 | MS.gene010265:CDS |
| ATGTTTCTCTTACGGTGTAA+TGG | 0.443028 | 5.4:-48532684 | None:intergenic |
| CAGCTTGTTCTGGCAAATCC+TGG | 0.448905 | 5.4:+48536765 | MS.gene010265:intron |
| CGAGAAGAATGTTTCTCTTA+CGG | 0.455600 | 5.4:-48532692 | None:intergenic |
| GTTAGAATTGGCATTGTGGC+TGG | 0.459682 | 5.4:+48534465 | MS.gene010265:CDS |
| CAACAGCCTCTGCAACAGTT+AGG | 0.464329 | 5.4:-48536854 | None:intergenic |
| AAGAGAGAAACCACGGCCAC+TGG | 0.464366 | 5.4:-48533204 | None:intergenic |
| TAAATTTCCTTCACAGAGGA+AGG | 0.466479 | 5.4:-48534414 | None:intergenic |
| TTAGGAGCTATGAATGTTGT+TGG | 0.466708 | 5.4:+48534669 | MS.gene010265:CDS |
| CGTAAGAGAAACATTCTTCT+CGG | 0.469662 | 5.4:+48532693 | MS.gene010265:CDS |
| AAGTCCCGTAAGTTAATTCT+GGG | 0.470217 | 5.4:+48532742 | MS.gene010265:CDS |
| TAGGTAAAACACATAGAGAA+AGG | 0.474007 | 5.4:+48534384 | MS.gene010265:intron |
| TTTGTCTTCTTCACAAGGCC+AGG | 0.474993 | 5.4:+48532606 | MS.gene010265:CDS |
| AAATGTTCTTCCAATTGCTA+TGG | 0.475056 | 5.4:-48534598 | None:intergenic |
| AACAGCTTAAGGGTTTCCTT+GGG | 0.476924 | 5.4:+48533665 | MS.gene010265:CDS |
| AGTTCCCGCGACATTGCGAT+TGG | 0.478807 | 5.4:+48533180 | MS.gene010265:CDS |
| ACTTCCTGCTATGTAGCAAC+TGG | 0.480021 | 5.4:+48534699 | MS.gene010265:CDS |
| TCTTCCCCAGAATAGCAGTT+CGG | 0.480188 | 5.4:-48535231 | None:intergenic |
| CCGTGGTTTCTCTCTTGTTG+GGG | 0.482794 | 5.4:+48533211 | MS.gene010265:CDS |
| TATTATCAGGTTCCTTCTCT+CGG | 0.490063 | 5.4:+48534791 | MS.gene010265:intron |
| TGATGGAAACAAAGAAATGA+TGG | 0.492078 | 5.4:+48534644 | MS.gene010265:CDS |
| GACTTTGTCTGATCTTTGAA+AGG | 0.507294 | 5.4:-48532724 | None:intergenic |
| CTATTACACGCTGCAATAGT+CGG | 0.507812 | 5.4:+48533607 | MS.gene010265:CDS |
| TACCAGTGGCATCCATGCCC+TGG | 0.511166 | 5.4:+48536251 | MS.gene010265:CDS |
| ACTCCAATTATGTTAAAGAA+AGG | 0.512105 | 5.4:+48535356 | MS.gene010265:CDS |
| CTATTCTGGGGAAGATCCCT+AGG | 0.514412 | 5.4:+48535239 | MS.gene010265:CDS |
| AAAGAAAGCATACTCCATGA+TGG | 0.514535 | 5.4:-48533750 | None:intergenic |
| CATCAACCTTGTTGACTACA+AGG | 0.515925 | 5.4:+48534960 | MS.gene010265:CDS |
| TAAATAACTCTTCCAGGGCA+TGG | 0.517398 | 5.4:-48536263 | None:intergenic |
| TGTTGTCGATCAGGGAAAGA+AGG | 0.517938 | 5.4:+48533980 | MS.gene010265:intron |
| AACTCTTATAATCAATACAC+CGG | 0.520076 | 5.4:-48535311 | None:intergenic |
| GTTCCCGCGACATTGCGATT+GGG | 0.521393 | 5.4:+48533181 | MS.gene010265:CDS |
| ATTTGACTTTGTTGCTTGCA+TGG | 0.523266 | 5.4:+48535011 | MS.gene010265:CDS |
| TTTGACTTTGTTGCTTGCAT+GGG | 0.525969 | 5.4:+48535012 | MS.gene010265:CDS |
| TTCTATAAACAGTTGTCCTA+GGG | 0.528944 | 5.4:-48535255 | None:intergenic |
| TTGTCTATCACTAGTGGACC+AGG | 0.533257 | 5.4:-48536783 | None:intergenic |
| AACACCATGCTTGTCTGCAC+GGG | 0.536403 | 5.4:-48534078 | None:intergenic |
| CAACACCATGCTTGTCTGCA+CGG | 0.537870 | 5.4:-48534079 | None:intergenic |
| AGCAAGTCTTCATACTCAGT+TGG | 0.538042 | 5.4:-48533270 | None:intergenic |
| CTTACCAGTTGCTACATAGC+AGG | 0.540351 | 5.4:-48534703 | None:intergenic |
| ACCGGTGATTACCTTGCGAA+AGG | 0.542435 | 5.4:+48534441 | MS.gene010265:CDS |
| TGGCCCAATCGCAATGTCGC+GGG | 0.545124 | 5.4:-48533184 | None:intergenic |
| CTAATTGCAGGATATTAAGA+TGG | 0.551261 | 5.4:+48536049 | MS.gene010265:intron |
| TCAGCAATAAATTTCATGGC+TGG | 0.552240 | 5.4:+48534814 | MS.gene010265:CDS |
| AGCAATATCCAGAAGCCACA+AGG | 0.552472 | 5.4:+48535284 | MS.gene010265:CDS |
| TTGGTCTGTAAACAGGACAT+TGG | 0.557141 | 5.4:+48532979 | MS.gene010265:intron |
| TGCAAGTCTCTGCATTCCCC+AGG | 0.559253 | 5.4:+48532870 | MS.gene010265:CDS |
| TTTGTCTGATCTTTGAAAGG+AGG | 0.561020 | 5.4:-48532721 | None:intergenic |
| GATAAATCCTTCCTCTGTGA+AGG | 0.562675 | 5.4:+48534407 | MS.gene010265:CDS |
| CAGGATATTAAGATGGCTGA+TGG | 0.564002 | 5.4:+48536056 | MS.gene010265:intron |
| GAACCATACACGCACAAGGT+TGG | 0.567049 | 5.4:+48532628 | MS.gene010265:CDS |
| AGGTAAAACACATAGAGAAA+GGG | 0.567158 | 5.4:+48534385 | MS.gene010265:intron |
| ATTTATTGCTGACCGAGAGA+AGG | 0.570417 | 5.4:-48534803 | None:intergenic |
| CGACATTGCGATTGGGCCAG+TGG | 0.572112 | 5.4:+48533188 | MS.gene010265:CDS |
| TTCCAGGGCATGGATGCCAC+TGG | 0.573861 | 5.4:-48536253 | None:intergenic |
| GTATTCTCATCAGCCCATCA+TGG | 0.578077 | 5.4:+48533736 | MS.gene010265:CDS |
| CTGCAATAGTCGGATTTATG+GGG | 0.578121 | 5.4:+48533617 | MS.gene010265:CDS |
| CAATTCTAACGCCTTTCGCA+AGG | 0.578178 | 5.4:-48534452 | None:intergenic |
| AAGAAAGCATACTCCATGAT+GGG | 0.579121 | 5.4:-48533749 | None:intergenic |
| AGAAGTTTGTCTTCTTCACA+AGG | 0.581983 | 5.4:+48532601 | MS.gene010265:CDS |
| TTGTAATAGGATCTTTGCAA+AGG | 0.587197 | 5.4:-48535197 | None:intergenic |
| GAGAGTACGACAGATATCAA+TGG | 0.588423 | 5.4:-48534035 | None:intergenic |
| TGGAGTTTGTCTATCACTAG+TGG | 0.589342 | 5.4:-48536789 | None:intergenic |
| CTGGCCCAATCGCAATGTCG+CGG | 0.590486 | 5.4:-48533185 | None:intergenic |
| GTTGTCGATCAGGGAAAGAA+GGG | 0.590642 | 5.4:+48533981 | MS.gene010265:intron |
| TGTAATGGAATTCCTTGAAG+AGG | 0.591832 | 5.4:-48532669 | None:intergenic |
| GCCTTTCGCAAGGTAATCAC+CGG | 0.593120 | 5.4:-48534442 | None:intergenic |
| TGCAATAGTCGGATTTATGG+GGG | 0.606663 | 5.4:+48533618 | MS.gene010265:CDS |
| ATATTCCCTATACTTAGTTG+GGG | 0.608360 | 5.4:+48532775 | MS.gene010265:CDS |
| CAATACACCGGGAACCCTTG+TGG | 0.612119 | 5.4:-48535299 | None:intergenic |
| CATGGCTGGCTGCGAAACTG+CGG | 0.618353 | 5.4:+48534828 | MS.gene010265:CDS |
| ACTTCTAAATAACTCTTCCA+GGG | 0.621237 | 5.4:-48536268 | None:intergenic |
| AGGCGTTAGAATTGGCATTG+TGG | 0.630919 | 5.4:+48534461 | MS.gene010265:CDS |
| TTGCTGCCTTGTAGTCAACA+AGG | 0.634329 | 5.4:-48534966 | None:intergenic |
| AGTTTGCAAAGTTTGATGTG+TGG | 0.641941 | 5.4:-48536809 | None:intergenic |
| GTTACTGATATTGATACCAG+TGG | 0.647299 | 5.4:+48536237 | MS.gene010265:CDS |
| GATCTTCCTAACTGTTGCAG+AGG | 0.649976 | 5.4:+48536848 | MS.gene010265:CDS |
| CCAGGAACCATACACGCACA+AGG | 0.650752 | 5.4:+48532624 | MS.gene010265:CDS |
| CCCCAACAAGAGAGAAACCA+CGG | 0.650873 | 5.4:-48533211 | None:intergenic |
| GACAGCACAAATGATGATTG+AGG | 0.651653 | 5.4:-48534938 | None:intergenic |
| GGTTATGTATACAAACAAAG+TGG | 0.654086 | 5.4:-48534057 | None:intergenic |
| ATGACGGCATAAATCAGTGG+TGG | 0.660901 | 5.4:-48533153 | None:intergenic |
| GCAATATCCAGAAGCCACAA+GGG | 0.661125 | 5.4:+48535285 | MS.gene010265:CDS |
| TTCCCCAGAATAGCAGTTCG+GGG | 0.661856 | 5.4:-48535229 | None:intergenic |
| GTCGCGGGAACTACACATGA+CGG | 0.663134 | 5.4:-48533169 | None:intergenic |
| CACATGACGGCATAAATCAG+TGG | 0.672226 | 5.4:-48533156 | None:intergenic |
| ACTCTTATAATCAATACACC+GGG | 0.673544 | 5.4:-48535310 | None:intergenic |
| TTTGGAGTGTATTTGAAAAG+CGG | 0.675812 | 5.4:-48534904 | None:intergenic |
| GGCCCCGAACTGCTATTCTG+GGG | 0.677105 | 5.4:+48535227 | MS.gene010265:CDS |
| AAAATAAATTTCCTTCACAG+AGG | 0.679400 | 5.4:-48534418 | None:intergenic |
| AGATCCTATTACAAGTCACA+AGG | 0.684935 | 5.4:+48535206 | MS.gene010265:CDS |
| ATAACCCGTGCAGACAAGCA+TGG | 0.686605 | 5.4:+48534074 | MS.gene010265:CDS |
| GCAATAGTCGGATTTATGGG+GGG | 0.696030 | 5.4:+48533619 | MS.gene010265:CDS |
| CTGTTGAAGAGCTATTGTGA+TGG | 0.722345 | 5.4:-48533647 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATCAAAACATAAAAA+AGG | - | chr5.4:48532960-48532979 | None:intergenic | 10.0% |
| !! | ATATATCAAAACATAAAAAA+GGG | - | chr5.4:48532959-48532978 | None:intergenic | 10.0% |
| !! | TTAACATACAAATATATATA+GGG | - | chr5.4:48536671-48536690 | None:intergenic | 10.0% |
| !!! | GAATTAATTTAATTTATCTA+TGG | - | chr5.4:48536631-48536650 | None:intergenic | 10.0% |
| !!! | TTTTTATGTTTTGATATATT+TGG | + | chr5.4:48532960-48532979 | MS.gene010265:intron | 10.0% |
| !! | AAAAAAAATTACAAACAGAA+AGG | - | chr5.4:48535395-48535414 | None:intergenic | 15.0% |
| !! | AAAAAAATTACAAACAGAAA+GGG | - | chr5.4:48535394-48535413 | None:intergenic | 15.0% |
| !! | ACATAATTAGAAAATAAGAA+AGG | - | chr5.4:48533956-48533975 | None:intergenic | 15.0% |
| !! | GTTAACATACAAATATATAT+AGG | - | chr5.4:48536672-48536691 | None:intergenic | 15.0% |
| !! | TATATATATCTCAACTAAAA+AGG | + | chr5.4:48536727-48536746 | MS.gene010265:intron | 15.0% |
| !! | TATATCAAAACATAAAAAAG+GGG | - | chr5.4:48532958-48532977 | None:intergenic | 15.0% |
| !!! | AAATTTAAGATAGACTATAT+TGG | - | chr5.4:48535661-48535680 | None:intergenic | 15.0% |
| !! | AATTAATACAATCTGTATAG+TGG | + | chr5.4:48535430-48535449 | MS.gene010265:intron | 20.0% |
| !! | ATATTAATAACTATGCTGTA+AGG | + | chr5.4:48535484-48535503 | MS.gene010265:intron | 20.0% |
| !! | TATAAGATATTTCGGATTAT+TGG | - | chr5.4:48535571-48535590 | None:intergenic | 20.0% |
| !! | TATGTAACATTTCTGATTAA+AGG | - | chr5.4:48533487-48533506 | None:intergenic | 20.0% |
| !! | TGGCAAACTATATTATTAAT+TGG | + | chr5.4:48533863-48533882 | MS.gene010265:intron | 20.0% |
| !! | TTACCTTTCTTTAACATAAT+TGG | - | chr5.4:48535362-48535381 | None:intergenic | 20.0% |
| !! | TTAGAAAATAAGAAAGGTTT+AGG | - | chr5.4:48533950-48533969 | None:intergenic | 20.0% |
| !! | TTGAATAGTGATTAATAGTT+CGG | + | chr5.4:48535783-48535802 | MS.gene010265:intron | 20.0% |
| !!! | AATCTAAAGTAAATTTACCT+GGG | - | chr5.4:48532890-48532909 | None:intergenic | 20.0% |
| !!! | ACACTGATTATAAGATATTT+CGG | - | chr5.4:48535579-48535598 | None:intergenic | 20.0% |
| !!! | GATAATTTTTCCTTTCTTTT+CGG | + | chr5.4:48536001-48536020 | MS.gene010265:intron | 20.0% |
| ! | AAAATAAATTTCCTTCACAG+AGG | - | chr5.4:48534421-48534440 | None:intergenic | 25.0% |
| ! | AACAAAGCTTGAATCTATAA+AGG | - | chr5.4:48533133-48533152 | None:intergenic | 25.0% |
| ! | AACTCTTATAATCAATACAC+CGG | - | chr5.4:48535314-48535333 | None:intergenic | 25.0% |
| ! | ACAAAGCTTGAATCTATAAA+GGG | - | chr5.4:48533132-48533151 | None:intergenic | 25.0% |
| ! | ACAAATTAAACACACATTTG+AGG | - | chr5.4:48536210-48536229 | None:intergenic | 25.0% |
| ! | ACATCTCAACTATCAAAAAT+TGG | - | chr5.4:48536122-48536141 | None:intergenic | 25.0% |
| ! | ACTCCAATTATGTTAAAGAA+AGG | + | chr5.4:48535356-48535375 | MS.gene010265:CDS | 25.0% |
| ! | ACTGATTAATATCTAACATC+TGG | + | chr5.4:48533843-48533862 | MS.gene010265:intron | 25.0% |
| ! | ATAATGAGAACTCAAGAAAA+CGG | - | chr5.4:48534550-48534569 | None:intergenic | 25.0% |
| ! | ATTATTAACAGTGTTGTGTT+CGG | - | chr5.4:48533405-48533424 | None:intergenic | 25.0% |
| ! | TAATAAGATAACTGAGTCTT+TGG | - | chr5.4:48535097-48535116 | None:intergenic | 25.0% |
| ! | TAGTTAAACCAGCAATAATA+AGG | - | chr5.4:48532849-48532868 | None:intergenic | 25.0% |
| ! | TGAATAGTGATTAATAGTTC+GGG | + | chr5.4:48535784-48535803 | MS.gene010265:intron | 25.0% |
| ! | TTAATTATTGCCGAAAAGAA+AGG | - | chr5.4:48536014-48536033 | None:intergenic | 25.0% |
| ! | TTATTACCATCAGATTTCAT+TGG | - | chr5.4:48535873-48535892 | None:intergenic | 25.0% |
| !! | ATCTAAAGTAAATTTACCTG+GGG | - | chr5.4:48532889-48532908 | None:intergenic | 25.0% |
| !! | ATGTTTTCTGTGTTTTTCTT+TGG | + | chr5.4:48533072-48533091 | MS.gene010265:intron | 25.0% |
| !! | ATTAATTTTGTTGCATGTTG+TGG | + | chr5.4:48535161-48535180 | MS.gene010265:intron | 25.0% |
| !! | CAATCTAAAGTAAATTTACC+TGG | - | chr5.4:48532891-48532910 | None:intergenic | 25.0% |
| !!! | CATGTTACATTTTGATTATC+AGG | + | chr5.4:48534572-48534591 | MS.gene010265:intron | 25.0% |
| !!! | GTGAAGGAAATTTATTTTAC+CGG | + | chr5.4:48534423-48534442 | MS.gene010265:CDS | 25.0% |
| !!! | TTTCAGTTTTAGTTTCTGAT+TGG | + | chr5.4:48535130-48535149 | MS.gene010265:intron | 25.0% |
| AAACAGAAGAAAAGCAAGAA+AGG | - | chr5.4:48533894-48533913 | None:intergenic | 30.0% | |
| AAACATTAACCTAACGAGTT+TGG | + | chr5.4:48535808-48535827 | MS.gene010265:intron | 30.0% | |
| AAATGTTCTTCCAATTGCTA+TGG | - | chr5.4:48534601-48534620 | None:intergenic | 30.0% | |
| AACAAAGAAATGATGGCATT+AGG | + | chr5.4:48534651-48534670 | MS.gene010265:CDS | 30.0% | |
| AATCAAAACATGCATGAAGA+TGG | - | chr5.4:48536457-48536476 | None:intergenic | 30.0% | |
| AATCTGATGGTAATAAGTGA+AGG | + | chr5.4:48535877-48535896 | MS.gene010265:intron | 30.0% | |
| AATTCCCAGAATTAACTTAC+GGG | - | chr5.4:48532749-48532768 | None:intergenic | 30.0% | |
| ACCAGCAATAATAAGGAATA+TGG | - | chr5.4:48532842-48532861 | None:intergenic | 30.0% | |
| ACTCTTATAATCAATACACC+GGG | - | chr5.4:48535313-48535332 | None:intergenic | 30.0% | |
| ACTTCTAAATAACTCTTCCA+GGG | - | chr5.4:48536271-48536290 | None:intergenic | 30.0% | |
| AGGTAAAACACATAGAGAAA+GGG | + | chr5.4:48534385-48534404 | MS.gene010265:intron | 30.0% | |
| ATACTCAAAGCTTGCAAATT+TGG | + | chr5.4:48533002-48533021 | MS.gene010265:CDS | 30.0% | |
| ATATTCCCTATACTTAGTTG+GGG | + | chr5.4:48532775-48532794 | MS.gene010265:CDS | 30.0% | |
| ATCAAAACATGCATGAAGAT+GGG | - | chr5.4:48536456-48536475 | None:intergenic | 30.0% | |
| ATCAATCAAAAATCCTAACC+TGG | - | chr5.4:48533584-48533603 | None:intergenic | 30.0% | |
| ATGAAAGACTATCAACTTGA+TGG | + | chr5.4:48534627-48534646 | MS.gene010265:CDS | 30.0% | |
| ATGTTATATGTTGTCGATCA+GGG | + | chr5.4:48533972-48533991 | MS.gene010265:intron | 30.0% | |
| CAATTCCCAGAATTAACTTA+CGG | - | chr5.4:48532750-48532769 | None:intergenic | 30.0% | |
| CATATTCCCTATACTTAGTT+GGG | + | chr5.4:48532774-48532793 | MS.gene010265:CDS | 30.0% | |
| CATCTTAATATCCTGCAATT+AGG | - | chr5.4:48536051-48536070 | None:intergenic | 30.0% | |
| CTAATTGCAGGATATTAAGA+TGG | + | chr5.4:48536049-48536068 | MS.gene010265:intron | 30.0% | |
| GAATAGTGATTAATAGTTCG+GGG | + | chr5.4:48535785-48535804 | MS.gene010265:intron | 30.0% | |
| GATATATTTGGTCTGTAAAC+AGG | + | chr5.4:48532972-48532991 | MS.gene010265:intron | 30.0% | |
| GCTAAAAGAAGTTTATGAAC+AGG | - | chr5.4:48534210-48534229 | None:intergenic | 30.0% | |
| GGTTATGTATACAAACAAAG+TGG | - | chr5.4:48534060-48534079 | None:intergenic | 30.0% | |
| TAGGTAAAACACATAGAGAA+AGG | + | chr5.4:48534384-48534403 | MS.gene010265:intron | 30.0% | |
| TATGTTATATGTTGTCGATC+AGG | + | chr5.4:48533971-48533990 | MS.gene010265:intron | 30.0% | |
| TCAAAAATTGGATTCGTGTT+TGG | - | chr5.4:48536110-48536129 | None:intergenic | 30.0% | |
| TCAAACTTTGCAAACTTTCT+TGG | + | chr5.4:48536816-48536835 | MS.gene010265:CDS | 30.0% | |
| TGATGGAAACAAAGAAATGA+TGG | + | chr5.4:48534644-48534663 | MS.gene010265:CDS | 30.0% | |
| TTCTATAAACAGTTGTCCTA+GGG | - | chr5.4:48535258-48535277 | None:intergenic | 30.0% | |
| TTGTAATAGGATCTTTGCAA+AGG | - | chr5.4:48535200-48535219 | None:intergenic | 30.0% | |
| TTTCTATAAACAGTTGTCCT+AGG | - | chr5.4:48535259-48535278 | None:intergenic | 30.0% | |
| ! | CAATTCCCAGAATTAACTTT+TGG | - | chr5.4:48532816-48532835 | None:intergenic | 30.0% |
| ! | TTTGGAGTGTATTTGAAAAG+CGG | - | chr5.4:48534907-48534926 | None:intergenic | 30.0% |
| ! | TTTTATCTATTGACGTGTGT+AGG | + | chr5.4:48534365-48534384 | MS.gene010265:intron | 30.0% |
| !! | AAGAGTGCTTACAATATACT+TGG | - | chr5.4:48533918-48533937 | None:intergenic | 30.0% |
| !! | ACAAGTTAAGTTGAGCATAA+AGG | - | chr5.4:48536164-48536183 | None:intergenic | 30.0% |
| !! | TATACTGTCTTGCTATTATC+AGG | + | chr5.4:48534778-48534797 | MS.gene010265:intron | 30.0% |
| !! | TCTAGTTCTAGACATGAAAT+AGG | + | chr5.4:48535725-48535744 | MS.gene010265:intron | 30.0% |
| !!! | AGGTATGACTCATTGATTTT+AGG | + | chr5.4:48533316-48533335 | MS.gene010265:intron | 30.0% |
| !!! | CATTATTGATTTTCGTGTGA+AGG | - | chr5.4:48533782-48533801 | None:intergenic | 30.0% |
| !!! | GATTCATGTTTTGGAATATG+CGG | + | chr5.4:48536382-48536401 | MS.gene010265:intron | 30.0% |
| !!! | GCATGTATTGATTCATGTTT+TGG | + | chr5.4:48536373-48536392 | MS.gene010265:intron | 30.0% |
| !!! | GTGTTTTAAGAGTTTCACAT+TGG | + | chr5.4:48535747-48535766 | MS.gene010265:intron | 30.0% |
| AAAGTCCCGTAAGTTAATTC+TGG | + | chr5.4:48532741-48532760 | MS.gene010265:CDS | 35.0% | |
| AAGTCCCGTAAGTTAATTCT+GGG | + | chr5.4:48532742-48532761 | MS.gene010265:CDS | 35.0% | |
| AATAGCTCTTCAACAGCTTA+AGG | + | chr5.4:48533654-48533673 | MS.gene010265:CDS | 35.0% | |
| ACCCTCCAAAAGTTAATTCT+GGG | + | chr5.4:48532808-48532827 | MS.gene010265:CDS | 35.0% | |
| ACGAATCACTAACATAGACA+CGG | + | chr5.4:48533376-48533395 | MS.gene010265:intron | 35.0% | |
| AGAAGTTTGTCTTCTTCACA+AGG | + | chr5.4:48532601-48532620 | MS.gene010265:CDS | 35.0% | |
| AGATCCTATTACAAGTCACA+AGG | + | chr5.4:48535206-48535225 | MS.gene010265:CDS | 35.0% | |
| AGTTTGCAAAGTTTGATGTG+TGG | - | chr5.4:48536812-48536831 | None:intergenic | 35.0% | |
| ATACACTCCAAATGCAATTC+TGG | + | chr5.4:48534915-48534934 | MS.gene010265:CDS | 35.0% | |
| ATAGCTCTTCAACAGCTTAA+GGG | + | chr5.4:48533655-48533674 | MS.gene010265:CDS | 35.0% | |
| ATGCTAACGACATACCAATT+GGG | + | chr5.4:48533546-48533565 | MS.gene010265:intron | 35.0% | |
| ATGTCGTTAGCATAAGAGTT+TGG | - | chr5.4:48533539-48533558 | None:intergenic | 35.0% | |
| ATGTTTCTCTTACGGTGTAA+TGG | - | chr5.4:48532687-48532706 | None:intergenic | 35.0% | |
| CCAACTAAGTATAGGGAATA+TGG | - | chr5.4:48532776-48532795 | None:intergenic | 35.0% | |
| CCATATTCCCTATACTTAGT+TGG | + | chr5.4:48532773-48532792 | MS.gene010265:CDS | 35.0% | |
| CCATCAGATTTCATTGGAAA+TGG | - | chr5.4:48535867-48535886 | None:intergenic | 35.0% | |
| CCATTTCCAATGAAATCTGA+TGG | + | chr5.4:48535864-48535883 | MS.gene010265:intron | 35.0% | |
| CGAGAAGAATGTTTCTCTTA+CGG | - | chr5.4:48532695-48532714 | None:intergenic | 35.0% | |
| CGTAAGAGAAACATTCTTCT+CGG | + | chr5.4:48532693-48532712 | MS.gene010265:CDS | 35.0% | |
| GACTTCTAAATAACTCTTCC+AGG | - | chr5.4:48536272-48536291 | None:intergenic | 35.0% | |
| GACTTTGTCTGATCTTTGAA+AGG | - | chr5.4:48532727-48532746 | None:intergenic | 35.0% | |
| GCCATATTCCTTATTATTGC+TGG | + | chr5.4:48532838-48532857 | MS.gene010265:CDS | 35.0% | |
| GTAAGGACAGAAGTTGTATA+TGG | + | chr5.4:48535501-48535520 | MS.gene010265:intron | 35.0% | |
| GTTACTGATATTGATACCAG+TGG | + | chr5.4:48536237-48536256 | MS.gene010265:CDS | 35.0% | |
| GTTCAAAGACCAAAAATTGC+AGG | + | chr5.4:48535924-48535943 | MS.gene010265:intron | 35.0% | |
| TAAATTTCCTTCACAGAGGA+AGG | - | chr5.4:48534417-48534436 | None:intergenic | 35.0% | |
| TACAATCTGTATAGTGGTCT+AGG | + | chr5.4:48535436-48535455 | MS.gene010265:intron | 35.0% | |
| TACCCTCCAAAAGTTAATTC+TGG | + | chr5.4:48532807-48532826 | MS.gene010265:CDS | 35.0% | |
| TACTCAGTTGGATGTGTATT+CGG | - | chr5.4:48533261-48533280 | None:intergenic | 35.0% | |
| TAGATATCCTAACCATCGTT+TGG | - | chr5.4:48535955-48535974 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAAATGTC+AGG | + | chr5.4:48535517-48535536 | MS.gene010265:intron | 35.0% | |
| TATGCTAACGACATACCAAT+TGG | + | chr5.4:48533545-48533564 | MS.gene010265:intron | 35.0% | |
| TATTATCAGGTTCCTTCTCT+CGG | + | chr5.4:48534791-48534810 | MS.gene010265:intron | 35.0% | |
| TCAGCAATAAATTTCATGGC+TGG | + | chr5.4:48534814-48534833 | MS.gene010265:CDS | 35.0% | |
| TCCAAAACAAAACCTCTTCA+AGG | + | chr5.4:48532657-48532676 | MS.gene010265:CDS | 35.0% | |
| TCGGTCAGCAATAAATTTCA+TGG | + | chr5.4:48534810-48534829 | MS.gene010265:CDS | 35.0% | |
| TCTTCAAAAGAGAGAAGTTC+AGG | + | chr5.4:48536290-48536309 | MS.gene010265:CDS | 35.0% | |
| TGCAATTAGGCATCAGAAAT+AGG | - | chr5.4:48536038-48536057 | None:intergenic | 35.0% | |
| TGTGTCTATAAGTGCATGTT+TGG | - | chr5.4:48536545-48536564 | None:intergenic | 35.0% | |
| TTAGGAGCTATGAATGTTGT+TGG | + | chr5.4:48534669-48534688 | MS.gene010265:CDS | 35.0% | |
| TTCTTCCCCAACTAAGTATA+GGG | - | chr5.4:48532783-48532802 | None:intergenic | 35.0% | |
| TTGGATGTTGGATTGAGATT+TGG | + | chr5.4:48533091-48533110 | MS.gene010265:intron | 35.0% | |
| ! | AAAGAAAGCATACTCCATGA+TGG | - | chr5.4:48533753-48533772 | None:intergenic | 35.0% |
| ! | AAGAAAGCATACTCCATGAT+GGG | - | chr5.4:48533752-48533771 | None:intergenic | 35.0% |
| ! | ACTGTTTTCATGAGCTATCT+TGG | - | chr5.4:48534240-48534259 | None:intergenic | 35.0% |
| ! | AGTTTGGTAGCACATGTATA+GGG | - | chr5.4:48533523-48533542 | None:intergenic | 35.0% |
| ! | ATTTGACTTTGTTGCTTGCA+TGG | + | chr5.4:48535011-48535030 | MS.gene010265:CDS | 35.0% |
| ! | CATGTCTAGAACTAGACATT+AGG | - | chr5.4:48535721-48535740 | None:intergenic | 35.0% |
| ! | CTGTGTTTTTCTTTGGATGT+TGG | + | chr5.4:48533079-48533098 | MS.gene010265:intron | 35.0% |
| ! | GTTTTTGCTTCAGTTGAGAT+AGG | + | chr5.4:48535051-48535070 | MS.gene010265:CDS | 35.0% |
| ! | TATTTCTGATGCCTAATTGC+AGG | + | chr5.4:48536037-48536056 | MS.gene010265:intron | 35.0% |
| ! | TCCCAGAATTAACTTTTGGA+GGG | - | chr5.4:48532812-48532831 | None:intergenic | 35.0% |
| ! | TGTAATGGAATTCCTTGAAG+AGG | - | chr5.4:48532672-48532691 | None:intergenic | 35.0% |
| ! | TTCCCAGAATTAACTTTTGG+AGG | - | chr5.4:48532813-48532832 | None:intergenic | 35.0% |
| ! | TTGGTTCATCCTGCAATTTT+TGG | - | chr5.4:48535936-48535955 | None:intergenic | 35.0% |
| ! | TTGTGAACTTTTGAATCCCA+AGG | - | chr5.4:48533684-48533703 | None:intergenic | 35.0% |
| ! | TTTGACTTTGTTGCTTGCAT+GGG | + | chr5.4:48535012-48535031 | MS.gene010265:CDS | 35.0% |
| ! | TTTGTCTGATCTTTGAAAGG+AGG | - | chr5.4:48532724-48532743 | None:intergenic | 35.0% |
| !! | ACAAGGCAGCAATTTTGATA+TGG | + | chr5.4:48534977-48534996 | MS.gene010265:CDS | 35.0% |
| !!! | CATGTTTTGATTGATACCAG+TGG | + | chr5.4:48536351-48536370 | MS.gene010265:intron | 35.0% |
| !!! | TCCTTGAAGAGGTTTTGTTT+TGG | - | chr5.4:48532661-48532680 | None:intergenic | 35.0% |
| !!! | TTCATGCATGTTTTGATTCG+CGG | + | chr5.4:48536459-48536478 | MS.gene010265:intron | 35.0% |
| !!! | TTGAAGAGGTTTTGTTTTGG+AGG | - | chr5.4:48532658-48532677 | None:intergenic | 35.0% |
| AAACATGCATGAAGATGGGT+TGG | - | chr5.4:48536452-48536471 | None:intergenic | 40.0% | |
| AACAGCTTAAGGGTTTCCTT+GGG | + | chr5.4:48533665-48533684 | MS.gene010265:CDS | 40.0% | |
| ACCATATGACCAAACTCGTT+AGG | - | chr5.4:48535820-48535839 | None:intergenic | 40.0% | |
| ACCTAACGAGTTTGGTCATA+TGG | + | chr5.4:48535816-48535835 | MS.gene010265:intron | 40.0% | |
| AGCAAGTCTTCATACTCAGT+TGG | - | chr5.4:48533273-48533292 | None:intergenic | 40.0% | |
| ATTGAGGCCAGAATTGCATT+TGG | - | chr5.4:48534925-48534944 | None:intergenic | 40.0% | |
| ATTGGGTGGATATTTCAACC+AGG | + | chr5.4:48533563-48533582 | MS.gene010265:intron | 40.0% | |
| ATTTATTGCTGACCGAGAGA+AGG | - | chr5.4:48534806-48534825 | None:intergenic | 40.0% | |
| CAGGATATTAAGATGGCTGA+TGG | + | chr5.4:48536056-48536075 | MS.gene010265:intron | 40.0% | |
| CAGTCATTATCGAGTCATCT+AGG | + | chr5.4:48535688-48535707 | MS.gene010265:intron | 40.0% | |
| CATGAATCAATACATGCCAC+TGG | - | chr5.4:48536370-48536389 | None:intergenic | 40.0% | |
| CTAGATGACTCGATAATGAC+TGG | - | chr5.4:48535690-48535709 | None:intergenic | 40.0% | |
| CTATTACACGCTGCAATAGT+CGG | + | chr5.4:48533607-48533626 | MS.gene010265:CDS | 40.0% | |
| CTGCAATAGTCGGATTTATG+GGG | + | chr5.4:48533617-48533636 | MS.gene010265:CDS | 40.0% | |
| CTGTTGAAGAGCTATTGTGA+TGG | - | chr5.4:48533650-48533669 | None:intergenic | 40.0% | |
| GACAGCACAAATGATGATTG+AGG | - | chr5.4:48534941-48534960 | None:intergenic | 40.0% | |
| GATAAATCCTTCCTCTGTGA+AGG | + | chr5.4:48534407-48534426 | MS.gene010265:CDS | 40.0% | |
| GATATCAATGGAGCAATTGC+TGG | - | chr5.4:48534026-48534045 | None:intergenic | 40.0% | |
| GCTGCAATAGTCGGATTTAT+GGG | + | chr5.4:48533616-48533635 | MS.gene010265:CDS | 40.0% | |
| GGTTGAAATATCCACCCAAT+TGG | - | chr5.4:48533563-48533582 | None:intergenic | 40.0% | |
| GTCATACACAGTCAATACTG+CGG | - | chr5.4:48533030-48533049 | None:intergenic | 40.0% | |
| GTGAACATAGCAGAACATAC+TGG | + | chr5.4:48534134-48534153 | MS.gene010265:intron | 40.0% | |
| GTGGATATTTCAACCAGGTT+AGG | + | chr5.4:48533568-48533587 | MS.gene010265:intron | 40.0% | |
| GTTCTTCCCCAACTAAGTAT+AGG | - | chr5.4:48532784-48532803 | None:intergenic | 40.0% | |
| TAAATAACTCTTCCAGGGCA+TGG | - | chr5.4:48536266-48536285 | None:intergenic | 40.0% | |
| TATCAGGAAGCCATAGCAAT+TGG | + | chr5.4:48534588-48534607 | MS.gene010265:intron | 40.0% | |
| TGAAATGTAACCACCAGTGT+CGG | + | chr5.4:48533443-48533462 | MS.gene010265:intron | 40.0% | |
| TGAGTTTGGCAGAATCTTAG+TGG | + | chr5.4:48536482-48536501 | MS.gene010265:intron | 40.0% | |
| TGCAATAGTCGGATTTATGG+GGG | + | chr5.4:48533618-48533637 | MS.gene010265:CDS | 40.0% | |
| TGGAGTTTGTCTATCACTAG+TGG | - | chr5.4:48536792-48536811 | None:intergenic | 40.0% | |
| TTGGTCTGTAAACAGGACAT+TGG | + | chr5.4:48532979-48532998 | MS.gene010265:intron | 40.0% | |
| ! | ATTTTGTTGCATGTTGTGGC+AGG | + | chr5.4:48535165-48535184 | MS.gene010265:intron | 40.0% |
| ! | CATCAACCTTGTTGACTACA+AGG | + | chr5.4:48534960-48534979 | MS.gene010265:CDS | 40.0% |
| ! | CTAGTGACTCCTGACATTTT+CGG | - | chr5.4:48535529-48535548 | None:intergenic | 40.0% |
| ! | GAGAGTACGACAGATATCAA+TGG | - | chr5.4:48534038-48534057 | None:intergenic | 40.0% |
| ! | GAGTTTGGTAGCACATGTAT+AGG | - | chr5.4:48533524-48533543 | None:intergenic | 40.0% |
| ! | TGCATGTTTGGAATCACTGT+GGG | - | chr5.4:48536533-48536552 | None:intergenic | 40.0% |
| ! | TTTCTGATTAAAGGCGCATC+AGG | - | chr5.4:48533478-48533497 | None:intergenic | 40.0% |
| ! | TTTGGAATATGCGGTGAGTT+TGG | + | chr5.4:48536391-48536410 | MS.gene010265:intron | 40.0% |
| ACTTCCTGCTATGTAGCAAC+TGG | + | chr5.4:48534699-48534718 | MS.gene010265:CDS | 45.0% | |
| AGCAATATCCAGAAGCCACA+AGG | + | chr5.4:48535284-48535303 | MS.gene010265:CDS | 45.0% | |
| AGGCGTTAGAATTGGCATTG+TGG | + | chr5.4:48534461-48534480 | MS.gene010265:CDS | 45.0% | |
| ATGACGGCATAAATCAGTGG+TGG | - | chr5.4:48533156-48533175 | None:intergenic | 45.0% | |
| ATGCGACGTGAATAGTGGTT+AGG | + | chr5.4:48535622-48535641 | MS.gene010265:intron | 45.0% | |
| CAACAGCTTAAGGGTTTCCT+TGG | + | chr5.4:48533664-48533683 | MS.gene010265:CDS | 45.0% | |
| CAATTCTAACGCCTTTCGCA+AGG | - | chr5.4:48534455-48534474 | None:intergenic | 45.0% | |
| CACATGACGGCATAAATCAG+TGG | - | chr5.4:48533159-48533178 | None:intergenic | 45.0% | |
| CATACCTAAAAACGCCAACG+TGG | - | chr5.4:48533303-48533322 | None:intergenic | 45.0% | |
| CGACTATTGCAGCGTGTAAT+AGG | - | chr5.4:48533609-48533628 | None:intergenic | 45.0% | |
| CGCTGCAATAGTCGGATTTA+TGG | + | chr5.4:48533615-48533634 | MS.gene010265:CDS | 45.0% | |
| CTAACGACATACCAATTGGG+TGG | + | chr5.4:48533549-48533568 | MS.gene010265:intron | 45.0% | |
| CTGGAACCCAAAAGAACTTC+TGG | - | chr5.4:48534007-48534026 | None:intergenic | 45.0% | |
| CTTACCAGTTGCTACATAGC+AGG | - | chr5.4:48534706-48534725 | None:intergenic | 45.0% | |
| GAACAAGCTGCTCAAGAAAG+AGG | - | chr5.4:48536755-48536774 | None:intergenic | 45.0% | |
| GATCTTCCTAACTGTTGCAG+AGG | + | chr5.4:48536848-48536867 | MS.gene010265:CDS | 45.0% | |
| GCAATAGTCGGATTTATGGG+GGG | + | chr5.4:48533619-48533638 | MS.gene010265:CDS | 45.0% | |
| GCAATATCCAGAAGCCACAA+GGG | + | chr5.4:48535285-48535304 | MS.gene010265:CDS | 45.0% | |
| GCTATGTTCACGATGAGAGA+AGG | - | chr5.4:48534125-48534144 | None:intergenic | 45.0% | |
| GGAGTCACTAGTTATGCATG+AGG | + | chr5.4:48535538-48535557 | MS.gene010265:intron | 45.0% | |
| GGATGAACCAAACGATGGTT+AGG | + | chr5.4:48535945-48535964 | MS.gene010265:intron | 45.0% | |
| GTATTCTCATCAGCCCATCA+TGG | + | chr5.4:48533736-48533755 | MS.gene010265:CDS | 45.0% | |
| GTTAGAATTGGCATTGTGGC+TGG | + | chr5.4:48534465-48534484 | MS.gene010265:CDS | 45.0% | |
| GTTGTCGATCAGGGAAAGAA+GGG | + | chr5.4:48533981-48534000 | MS.gene010265:intron | 45.0% | |
| TCGCATCACTGTCTAATGTG+AGG | - | chr5.4:48535608-48535627 | None:intergenic | 45.0% | |
| TCTTCCCCAGAATAGCAGTT+CGG | - | chr5.4:48535234-48535253 | None:intergenic | 45.0% | |
| TGAGTTTGGCAGAATCACAG+TGG | + | chr5.4:48536405-48536424 | MS.gene010265:intron | 45.0% | |
| TGTTGTCGATCAGGGAAAGA+AGG | + | chr5.4:48533980-48533999 | MS.gene010265:intron | 45.0% | |
| TTGCAGGATGAACCAAACGA+TGG | + | chr5.4:48535940-48535959 | MS.gene010265:intron | 45.0% | |
| TTGCTGCCTTGTAGTCAACA+AGG | - | chr5.4:48534969-48534988 | None:intergenic | 45.0% | |
| TTGGCAGAATCTTAGTGGCT+TGG | + | chr5.4:48536487-48536506 | MS.gene010265:intron | 45.0% | |
| TTGTGGCTTCTGGATATTGC+TGG | - | chr5.4:48535285-48535304 | None:intergenic | 45.0% | |
| TTTGTCTTCTTCACAAGGCC+AGG | + | chr5.4:48532606-48532625 | MS.gene010265:CDS | 45.0% | |
| ! | AATCTTAGTGGCTTGGCTCA+CGG | + | chr5.4:48536494-48536513 | MS.gene010265:intron | 45.0% |
| ! | AGAAGGGCCAGAAGTTCTTT+TGG | + | chr5.4:48533997-48534016 | MS.gene010265:CDS | 45.0% |
| ! | CTTTCTTGAGCAGCTTGTTC+TGG | + | chr5.4:48536755-48536774 | MS.gene010265:intron | 45.0% |
| ! | GAAGGGCCAGAAGTTCTTTT+GGG | + | chr5.4:48533998-48534017 | MS.gene010265:CDS | 45.0% |
| ! | GTGCATGTTTGGAATCACTG+TGG | - | chr5.4:48536534-48536553 | None:intergenic | 45.0% |
| ! | TGTTTGGAATCACTGTGGGT+TGG | - | chr5.4:48536529-48536548 | None:intergenic | 45.0% |
| ! | TTGTCTATCACTAGTGGACC+AGG | - | chr5.4:48536786-48536805 | None:intergenic | 45.0% |
| !! | ACTTGCTTTTACTGCCACGT+TGG | + | chr5.4:48533286-48533305 | MS.gene010265:intron | 45.0% |
| !! | CTTGCGAAAGGCGTTAGAAT+TGG | + | chr5.4:48534453-48534472 | MS.gene010265:CDS | 45.0% |
| !!! | CTTGCATGGGAGCATTTTTC+GGG | + | chr5.4:48535025-48535044 | MS.gene010265:CDS | 45.0% |
| !!! | GCTTGCATGGGAGCATTTTT+CGG | + | chr5.4:48535024-48535043 | MS.gene010265:CDS | 45.0% |
| !!! | GTTTTGATTCGCGGTGAGTT+TGG | + | chr5.4:48536468-48536487 | MS.gene010265:intron | 45.0% |
| !!! | TTGCATGGGAGCATTTTTCG+GGG | + | chr5.4:48535026-48535045 | MS.gene010265:CDS | 45.0% |
| AACACCATGCTTGTCTGCAC+GGG | - | chr5.4:48534081-48534100 | None:intergenic | 50.0% | |
| ACCGGTGATTACCTTGCGAA+AGG | + | chr5.4:48534441-48534460 | MS.gene010265:CDS | 50.0% | |
| ACTCCAACCTTGTGCGTGTA+TGG | - | chr5.4:48532634-48532653 | None:intergenic | 50.0% | |
| ATAACCCGTGCAGACAAGCA+TGG | + | chr5.4:48534074-48534093 | MS.gene010265:CDS | 50.0% | |
| CAACACCATGCTTGTCTGCA+CGG | - | chr5.4:48534082-48534101 | None:intergenic | 50.0% | |
| CAACAGCCTCTGCAACAGTT+AGG | - | chr5.4:48536857-48536876 | None:intergenic | 50.0% | |
| CAGTGATGCGACGTGAATAG+TGG | + | chr5.4:48535617-48535636 | MS.gene010265:intron | 50.0% | |
| CCCCAACAAGAGAGAAACCA+CGG | - | chr5.4:48533214-48533233 | None:intergenic | 50.0% | |
| CCGTGGTTTCTCTCTTGTTG+GGG | + | chr5.4:48533211-48533230 | MS.gene010265:CDS | 50.0% | |
| CTTCCCCAGAATAGCAGTTC+GGG | - | chr5.4:48535233-48535252 | None:intergenic | 50.0% | |
| GAACCATACACGCACAAGGT+TGG | + | chr5.4:48532628-48532647 | MS.gene010265:CDS | 50.0% | |
| GCCGTGGTTTCTCTCTTGTT+GGG | + | chr5.4:48533210-48533229 | MS.gene010265:CDS | 50.0% | |
| GCCTTTCGCAAGGTAATCAC+CGG | - | chr5.4:48534445-48534464 | None:intergenic | 50.0% | |
| TTCCCCAGAATAGCAGTTCG+GGG | - | chr5.4:48535232-48535251 | None:intergenic | 50.0% | |
| TTGGCAGAATCACAGTGGCT+TGG | + | chr5.4:48536410-48536429 | MS.gene010265:intron | 50.0% | |
| ! | ACTGCCACGTTGGCGTTTTT+AGG | + | chr5.4:48533296-48533315 | MS.gene010265:intron | 50.0% |
| ! | CAAGGGTCTTCAGCTAGCTT+TGG | - | chr5.4:48536891-48536910 | None:intergenic | 50.0% |
| ! | CAGCTTGTTCTGGCAAATCC+TGG | + | chr5.4:48536765-48536784 | MS.gene010265:intron | 50.0% |
| ! | CTATTCTGGGGAAGATCCCT+AGG | + | chr5.4:48535239-48535258 | MS.gene010265:CDS | 50.0% |
| ! | GGGGCCTTGTGACTTGTAAT+AGG | - | chr5.4:48535213-48535232 | None:intergenic | 50.0% |
| !! | TAACCACCAGTGTCGGTGTT+AGG | + | chr5.4:48533450-48533469 | MS.gene010265:intron | 50.0% |
| AAGAGAGAAACCACGGCCAC+TGG | - | chr5.4:48533207-48533226 | None:intergenic | 55.0% | |
| AAGGCCCCGAACTGCTATTC+TGG | + | chr5.4:48535225-48535244 | MS.gene010265:CDS | 55.0% | |
| AGGCCCCGAACTGCTATTCT+GGG | + | chr5.4:48535226-48535245 | MS.gene010265:CDS | 55.0% | |
| AGTTCCCGCGACATTGCGAT+TGG | + | chr5.4:48533180-48533199 | MS.gene010265:CDS | 55.0% | |
| CAATACACCGGGAACCCTTG+TGG | - | chr5.4:48535302-48535321 | None:intergenic | 55.0% | |
| CCAGGAACCATACACGCACA+AGG | + | chr5.4:48532624-48532643 | MS.gene010265:CDS | 55.0% | |
| CCTTGTGCGTGTATGGTTCC+TGG | - | chr5.4:48532627-48532646 | None:intergenic | 55.0% | |
| GGCCGTGGTTTCTCTCTTGT+TGG | + | chr5.4:48533209-48533228 | MS.gene010265:CDS | 55.0% | |
| GGGTTGGACGAAATCGCGAT+GGG | - | chr5.4:48536436-48536455 | None:intergenic | 55.0% | |
| GTCGCGGGAACTACACATGA+CGG | - | chr5.4:48533172-48533191 | None:intergenic | 55.0% | |
| GTTCCCGCGACATTGCGATT+GGG | + | chr5.4:48533181-48533200 | MS.gene010265:CDS | 55.0% | |
| TGCAAGTCTCTGCATTCCCC+AGG | + | chr5.4:48532870-48532889 | MS.gene010265:CDS | 55.0% | |
| ! | TGGGTTGGACGAAATCGCGA+TGG | - | chr5.4:48536437-48536456 | None:intergenic | 55.0% |
| CAGGTGCCTAACACCGACAC+TGG | - | chr5.4:48533459-48533478 | None:intergenic | 60.0% | |
| CCAGAAGCCACAAGGGTTCC+CGG | + | chr5.4:48535292-48535311 | MS.gene010265:CDS | 60.0% | |
| CGACATTGCGATTGGGCCAG+TGG | + | chr5.4:48533188-48533207 | MS.gene010265:CDS | 60.0% | |
| CTGGCCCAATCGCAATGTCG+CGG | - | chr5.4:48533188-48533207 | None:intergenic | 60.0% | |
| GGCCCCGAACTGCTATTCTG+GGG | + | chr5.4:48535227-48535246 | MS.gene010265:CDS | 60.0% | |
| GTGCCTAACACCGACACTGG+TGG | - | chr5.4:48533456-48533475 | None:intergenic | 60.0% | |
| TACCAGTGGCATCCATGCCC+TGG | + | chr5.4:48536251-48536270 | MS.gene010265:CDS | 60.0% | |
| TGGCCCAATCGCAATGTCGC+GGG | - | chr5.4:48533187-48533206 | None:intergenic | 60.0% | |
| TTCCAGGGCATGGATGCCAC+TGG | - | chr5.4:48536256-48536275 | None:intergenic | 60.0% | |
| ! | CATGGCTGGCTGCGAAACTG+CGG | + | chr5.4:48534828-48534847 | MS.gene010265:CDS | 60.0% |
| CCGGGAACCCTTGTGGCTTC+TGG | - | chr5.4:48535295-48535314 | None:intergenic | 65.0% | |
| TGCGATTGGGCCAGTGGCCG+TGG | + | chr5.4:48533194-48533213 | MS.gene010265:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 48532592 | 48536911 | 48532592 | ID=MS.gene010265 |
| chr5.4 | mRNA | 48532592 | 48536911 | 48532592 | ID=MS.gene010265.t1;Parent=MS.gene010265 |
| chr5.4 | exon | 48532592 | 48532891 | 48532592 | ID=MS.gene010265.t1.exon1;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48532592 | 48532891 | 48532592 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48532994 | 48533031 | 48532994 | ID=MS.gene010265.t1.exon2;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48532994 | 48533031 | 48532994 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48533146 | 48533277 | 48533146 | ID=MS.gene010265.t1.exon3;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48533146 | 48533277 | 48533146 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48533585 | 48533759 | 48533585 | ID=MS.gene010265.t1.exon4;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48533585 | 48533759 | 48533585 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48533993 | 48534106 | 48533993 | ID=MS.gene010265.t1.exon5;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48533993 | 48534106 | 48533993 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48534387 | 48534503 | 48534387 | ID=MS.gene010265.t1.exon6;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48534387 | 48534503 | 48534387 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48534594 | 48534720 | 48534594 | ID=MS.gene010265.t1.exon7;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48534594 | 48534720 | 48534594 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48534800 | 48535086 | 48534800 | ID=MS.gene010265.t1.exon8;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48534800 | 48535086 | 48534800 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48535187 | 48535377 | 48535187 | ID=MS.gene010265.t1.exon9;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48535187 | 48535377 | 48535187 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48536059 | 48536144 | 48536059 | ID=MS.gene010265.t1.exon10;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48536059 | 48536144 | 48536059 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48536235 | 48536311 | 48536235 | ID=MS.gene010265.t1.exon11;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48536235 | 48536311 | 48536235 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| chr5.4 | exon | 48536768 | 48536911 | 48536768 | ID=MS.gene010265.t1.exon12;Parent=MS.gene010265.t1 |
| chr5.4 | CDS | 48536768 | 48536911 | 48536768 | ID=cds.MS.gene010265.t1;Parent=MS.gene010265.t1 |
| Gene Sequence |
| Protein sequence |
