AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033981

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033981.t1 MTR_4g011970 99.541 654 3 0 1 654 1 654 0.0 1315
MS.gene033981.t1 MTR_2g102243 82.416 654 106 2 3 654 1 647 0.0 1113
MS.gene033981.t1 MTR_2g102243 82.423 586 94 2 3 586 1 579 0.0 997
MS.gene033981.t1 MTR_4g084620 63.854 628 224 2 27 653 15 640 0.0 829
MS.gene033981.t1 MTR_4g084640 60.276 652 246 3 4 654 5 644 0.0 799
MS.gene033981.t1 MTR_7g095430 56.543 619 269 0 29 647 17 635 0.0 722
MS.gene033981.t1 MTR_1g071530 56.390 626 273 0 29 654 20 645 0.0 716
MS.gene033981.t1 MTR_5g061880 53.195 626 292 1 30 654 30 655 0.0 694
MS.gene033981.t1 MTR_2g008470 54.531 618 279 2 28 644 52 668 0.0 667
MS.gene033981.t1 MTR_2g008470 54.531 618 279 2 28 644 33 649 0.0 667
MS.gene033981.t1 MTR_7g095430 57.581 554 235 0 29 582 17 570 0.0 662
MS.gene033981.t1 MTR_3g073780 51.664 631 295 4 30 654 33 659 0.0 653
MS.gene033981.t1 MTR_6g086170 48.304 619 313 3 28 643 6 620 0.0 601
MS.gene033981.t1 MTR_3g073780 54.104 536 243 2 30 562 33 568 0.0 595
MS.gene033981.t1 MTR_3g073780 53.890 527 240 2 30 553 33 559 0.0 579
MS.gene033981.t1 MTR_3g087740 46.951 656 335 7 3 649 1 652 0.0 579
MS.gene033981.t1 MTR_5g061860 48.237 624 300 7 42 649 33 649 0.0 563
MS.gene033981.t1 MTR_3g073730 45.950 605 319 3 58 654 56 660 8.13e-179 523
MS.gene033981.t1 MTR_5g061860 49.811 528 243 6 42 553 33 554 2.37e-169 495
MS.gene033981.t1 MTR_3g087730 42.488 619 336 9 46 649 42 655 1.35e-159 474
MS.gene033981.t1 MTR_7g022870 35.067 596 355 12 61 643 57 633 2.62e-115 361
MS.gene033981.t1 MTR_7g022870 37.278 507 297 10 61 562 57 547 9.79e-106 332
MS.gene033981.t1 MTR_6g024420 34.091 132 68 3 232 363 54 166 9.94e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033981.t1 AT3G15990 74.238 656 164 2 1 654 1 653 0.0 1010
MS.gene033981.t1 AT1G23090 63.826 622 224 1 27 647 1 622 0.0 822
MS.gene033981.t1 AT3G51895 57.075 629 266 2 30 654 20 648 0.0 749
MS.gene033981.t1 AT3G51895 57.075 629 266 2 30 654 65 693 0.0 748
MS.gene033981.t1 AT4G02700 54.531 618 280 1 28 644 8 625 0.0 658
MS.gene033981.t1 AT4G08620 51.669 629 303 1 26 653 19 647 0.0 648
MS.gene033981.t1 AT1G78000 54.153 626 285 2 19 643 18 642 0.0 643
MS.gene033981.t1 AT1G78000 54.153 626 285 2 19 643 18 642 0.0 643
MS.gene033981.t1 AT1G78000 54.153 626 285 2 19 643 18 642 0.0 643
MS.gene033981.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene033981.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene033981.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene033981.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene033981.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene033981.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene033981.t1 AT1G78000 54.484 591 267 2 19 608 18 607 0.0 615
MS.gene033981.t1 AT5G19600 47.674 602 305 3 43 643 28 620 0.0 593
MS.gene033981.t1 AT1G78000 54.965 564 252 2 19 581 18 580 0.0 589
MS.gene033981.t1 AT1G22150 52.613 574 271 1 9 581 10 583 0.0 584
MS.gene033981.t1 AT5G10180 47.876 612 296 6 54 643 59 669 0.0 544
MS.gene033981.t1 AT1G77990 48.611 576 291 3 73 643 88 663 0.0 540
MS.gene033981.t1 AT1G78000 55.950 479 209 2 19 496 18 495 8.15e-171 498
MS.gene033981.t1 AT1G78000 55.730 445 196 1 138 581 1 445 1.03e-157 462
MS.gene033981.t1 AT3G12520 35.364 591 372 9 55 643 28 610 2.75e-118 367
MS.gene033981.t1 AT3G12520 35.364 591 372 9 55 643 44 626 3.47e-118 368
MS.gene033981.t1 AT5G13550 35.108 601 360 12 55 643 57 639 6.29e-115 360
MS.gene033981.t1 AT3G12520 37.400 500 304 8 55 553 44 535 1.37e-106 333

Find 128 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCATGAGTCAAATATTT+TGG 0.137024 4.3:-84770320 MS.gene033981:CDS
GATTCCTGCATTTATCATTT+TGG 0.179334 4.3:-84771230 MS.gene033981:CDS
TCCAATTCTCTATCTTAAAT+TGG 0.180771 4.3:-84774788 MS.gene033981:CDS
GCAAACTTGCCACCAATTAT+TGG 0.190086 4.3:-84775049 MS.gene033981:CDS
AATCTTCTCTTGGTGTATTA+AGG 0.199957 4.3:-84774732 MS.gene033981:intron
TCCTTATAGCTTCTTTATAT+TGG 0.203302 4.3:+84771251 None:intergenic
GCTGAAATCCAGAATAATTT+TGG 0.218068 4.3:+84772988 None:intergenic
TAGGCCAAACACATCGGTTT+TGG 0.225950 4.3:-84771311 MS.gene033981:CDS
TGAAGAGGCCAAAATTATTC+TGG 0.237606 4.3:-84772996 MS.gene033981:CDS
CTTTATATTGGTTTAGGTTA+TGG 0.240443 4.3:+84771263 None:intergenic
TTCACTGCCACTTTCTTTGC+TGG 0.244662 4.3:-84774763 MS.gene033981:CDS
TAGCTTCTTTATATTGGTTT+AGG 0.255101 4.3:+84771257 None:intergenic
TACTAACATAATCCAATAAT+TGG 0.264142 4.3:+84775037 None:intergenic
GAAACTTTGTGAAGGAAGTT+TGG 0.280486 4.3:+84775675 None:intergenic
TTCCTTCACAAAGTTTCTTC+TGG 0.283021 4.3:-84775669 MS.gene033981:CDS
GCTTGTGTGTGCTCCTTCTT+TGG 0.296349 4.3:-84771607 MS.gene033981:CDS
TTCAAAAGGATCAACTCTAT+TGG 0.303368 4.3:+84775850 None:intergenic
TCTCATTGAAAAGACTAAAA+TGG 0.306767 4.3:+84772933 None:intergenic
TGGTTTAGGTTATGGAATAT+TGG 0.321771 4.3:+84771271 None:intergenic
GAAACTGAATCCTAGTAAAA+TGG 0.323837 4.3:+84773186 None:intergenic
TTCAATTGCATCATTAGTTA+TGG 0.330999 4.3:-84774848 MS.gene033981:CDS
GATGCAAATAGTACCTGTTT+TGG 0.335400 4.3:-84774150 MS.gene033981:CDS
GTACTTCAGTGGTCCTCATT+TGG 0.349276 4.3:-84772605 MS.gene033981:CDS
TTGGCTCTTGCTATCAAAAC+TGG 0.349386 4.3:-84772586 MS.gene033981:CDS
CTCTTTATTTCAGTTCCATT+AGG 0.352279 4.3:-84771580 MS.gene033981:CDS
GGCAACATTGGTAGGTTTCA+TGG 0.353389 4.3:-84774243 MS.gene033981:CDS
ACCAATATAAAGAAGCTATA+AGG 0.355595 4.3:-84771252 MS.gene033981:CDS
AGTTGCATTGGCAAAGTAGA+TGG 0.357725 4.3:+84771195 None:intergenic
GGTTTATTCCAATCTTCTCT+TGG 0.372332 4.3:-84774742 MS.gene033981:CDS
GCCAATTTAAGATAGAGAAT+TGG 0.380536 4.3:+84774787 None:intergenic
TATTATCTAACCTTTCTTGC+AGG 0.383951 4.3:+84771170 None:intergenic
AACAAAGAAATGATGGCTAT+TGG 0.394027 4.3:-84771987 MS.gene033981:CDS
ATTTCAGTTCCATTAGGCCT+TGG 0.394386 4.3:-84771574 MS.gene033981:CDS
TTTCCCAAAACCGATGTGTT+TGG 0.399348 4.3:+84771307 None:intergenic
ACTAATGATGCAATTGAAAC+AGG 0.399556 4.3:+84774853 None:intergenic
CAATGTGTCTTGTTATCAAC+AGG 0.401409 4.3:+84773155 None:intergenic
TCAATTGCATCATTAGTTAT+GGG 0.404701 4.3:-84774847 MS.gene033981:CDS
GATACATTGGTATTTCTGAT+TGG 0.409442 4.3:+84775816 None:intergenic
ATACATTATGCGAACTTAGA+AGG 0.411159 4.3:-84770803 MS.gene033981:CDS
TGGTGGCAAGTTTGCAAGCT+TGG 0.413188 4.3:+84775057 None:intergenic
TGCTCCAGCATTGTAGTTAA+CGG 0.416189 4.3:+84771813 None:intergenic
CTTTCTTTAGGATACTGAGA+TGG 0.423739 4.3:-84771021 MS.gene033981:intron
GCTTTGATATATTCAGTACT+TGG 0.424476 4.3:-84774901 MS.gene033981:CDS
ACCGCGACTCCAAGGCCTAA+TGG 0.431452 4.3:+84771565 None:intergenic
TCCAATGGTGATTGATACAT+TGG 0.435277 4.3:+84775803 None:intergenic
AATCCATGAAAAGGGTCATC+AGG 0.439230 4.3:+84775704 None:intergenic
TCTTCATGTTATGTCACAAC+AGG 0.442713 4.3:-84771939 MS.gene033981:intron
TTTCTTTAGGATACTGAGAT+GGG 0.446275 4.3:-84771020 MS.gene033981:intron
TTCTTGCAGGTAAGTTGCAT+TGG 0.462099 4.3:+84771183 None:intergenic
TTGGATTCCTTTGGAATGAA+AGG 0.464886 4.3:-84770301 MS.gene033981:CDS
CTTGGAAGTTCTAGACATCT+TGG 0.471850 4.3:-84774883 MS.gene033981:CDS
TGCTAGCCTCGCCATTCCTC+AGG 0.473691 4.3:-84775558 MS.gene033981:intron
ATGCAACTTACCTGCAAGAA+AGG 0.475378 4.3:-84771180 MS.gene033981:intron
TTTCGCTCCGATATTATATC+CGG 0.476180 4.3:-84775590 MS.gene033981:CDS
TTAATACACCAAGAGAAGAT+TGG 0.480745 4.3:+84774734 None:intergenic
ATCAAAACTGGACTTGTCAC+TGG 0.484223 4.3:-84772574 MS.gene033981:CDS
TTGAATACAGAGACCAAAAC+AGG 0.486192 4.3:+84774137 None:intergenic
CAACAACTCAAAGGGTTGCT+AGG 0.491344 4.3:-84774194 MS.gene033981:CDS
ATGGCTGCTAAGACAACGTT+CGG 0.494450 4.3:+84771709 None:intergenic
GTTAACGGCCGATCGAGAAA+AGG 0.496788 4.3:+84771828 None:intergenic
TTATGGAATATTGGTGTCCC+TGG 0.500339 4.3:+84771280 None:intergenic
ACCGCGCCGCGTACAAATTG+TGG 0.502998 4.3:-84771654 MS.gene033981:CDS
AATAAAGAGAACACCAAAGA+AGG 0.509568 4.3:+84771594 None:intergenic
TGAAGAGTGGTTCTTTGTGG+TGG 0.510231 4.3:+84775761 None:intergenic
CTATCAAAGGCAACATTGGT+AGG 0.514805 4.3:-84774251 MS.gene033981:CDS
GATGGTGGATTAAGTCCCTT+TGG 0.516719 4.3:+84772640 None:intergenic
GGTGAGACCGGATATAATAT+CGG 0.517433 4.3:+84775583 None:intergenic
AGTTCTAGACATCTTGGTGT+TGG 0.520319 4.3:-84774877 MS.gene033981:CDS
AGCAGTATCAAATATAATCA+TGG 0.524523 4.3:-84771785 MS.gene033981:CDS
GGATGGAAACAAAGAAATGA+TGG 0.525764 4.3:-84771994 MS.gene033981:CDS
ACATTGGTAGGTTTCATGGC+TGG 0.529773 4.3:-84774239 MS.gene033981:CDS
TGTCACTACAACAACTCAAA+GGG 0.530242 4.3:-84774202 MS.gene033981:CDS
ATGCGAACTTAGAAGGAGAC+TGG 0.530396 4.3:-84770796 MS.gene033981:CDS
TTCCAGGAAGGAATTGCAGT+TGG 0.530422 4.3:-84772050 MS.gene033981:intron
ACCAATGTATCAATCACCAT+TGG 0.531962 4.3:-84775804 MS.gene033981:CDS
GAGGCTAGCAATGGTGAGAC+CGG 0.532977 4.3:+84775571 None:intergenic
TTTCTTTGTTTCCATCCACT+TGG 0.534917 4.3:+84772000 None:intergenic
GATGACGGCAGTGATGATAA+TGG 0.536495 4.3:+84771690 None:intergenic
TCGGCCGTTAACTACAATGC+TGG 0.537259 4.3:-84771817 MS.gene033981:CDS
ATTATCATCACTGCCGTCAT+CGG 0.540965 4.3:-84771688 MS.gene033981:CDS
ATACAATCCTTTCATTCCAA+AGG 0.543543 4.3:+84770294 None:intergenic
AGTACTGAATATATCAAAGC+AGG 0.543770 4.3:+84774904 None:intergenic
TCCATTAGGCCTTGGAGTCG+CGG 0.545650 4.3:-84771566 MS.gene033981:intron
ATTGGTCTTATGAACATAGC+TGG 0.553111 4.3:-84771969 MS.gene033981:CDS
TGAAGCTTACCGCGACTCCA+AGG 0.555589 4.3:+84771557 None:intergenic
TTGTTATCAACAGGAAGGCT+AGG 0.555953 4.3:+84773164 None:intergenic
ACAGCCAAAATGATAAATGC+AGG 0.557979 4.3:+84771226 None:intergenic
GTGTCACTACAACAACTCAA+AGG 0.558467 4.3:-84774203 MS.gene033981:CDS
GACAAAATAACTGAAGTCAA+TGG 0.561431 4.3:+84772958 None:intergenic
CTTCAGAACTACCAAGTGGA+TGG 0.562216 4.3:-84772011 MS.gene033981:CDS
TAACATAATCCAATAATTGG+TGG 0.562298 4.3:+84775040 None:intergenic
CTTGTGTTGGCAAATCCTGT+TGG 0.563326 4.3:-84770358 MS.gene033981:CDS
AAAGGATTGTATCTCTCAGT+AGG 0.571926 4.3:-84770283 MS.gene033981:CDS
GTTGCATTGGCAAAGTAGAT+GGG 0.572656 4.3:+84771196 None:intergenic
GAAGATTGGTGAATTGCCAA+AGG 0.575624 4.3:-84772656 MS.gene033981:intron
ACTGAGATGGGTTCGAGAAG+AGG 0.576650 4.3:-84771008 MS.gene033981:CDS
AGCCAGAAGAAACTTTGTGA+AGG 0.577141 4.3:+84775667 None:intergenic
AAATCCTGCTTCATGTCTCT+AGG 0.577192 4.3:-84771330 MS.gene033981:CDS
AAGATTGGTGAATTGCCAAA+GGG 0.578839 4.3:-84772655 MS.gene033981:CDS
TTGATTGGTGCAGCTTGTGT+TGG 0.581372 4.3:-84770371 MS.gene033981:intron
TTGATAGCAAGAGCCAAATG+AGG 0.582240 4.3:+84772592 None:intergenic
TACAACATGTTTGATGATGG+TGG 0.585490 4.3:+84772625 None:intergenic
CGAACCTTGTGAATTTCCAA+TGG 0.586272 4.3:+84775788 None:intergenic
ACTTGTGTCTATGCCAGTCA+CGG 0.591510 4.3:+84770833 None:intergenic
GAATAAACCAGCAAAGAAAG+TGG 0.605122 4.3:+84774756 None:intergenic
AATCGTGACAGAGCTTGAAG+AGG 0.614464 4.3:-84773011 MS.gene033981:intron
TCAAACATGTTGTACTTCAG+TGG 0.615262 4.3:-84772616 MS.gene033981:CDS
ATCACCATTGGAAATTCACA+AGG 0.618615 4.3:-84775792 MS.gene033981:CDS
AGGAATGGCGAGGCTAGCAA+TGG 0.626508 4.3:+84775562 None:intergenic
TCCACAATTTGTACGCGGCG+CGG 0.627795 4.3:+84771653 None:intergenic
TTGGCCTAGAGACATGAAGC+AGG 0.627930 4.3:+84771326 None:intergenic
AAGTACAACATGTTTGATGA+TGG 0.630881 4.3:+84772622 None:intergenic
GTGTCTTGTTATCAACAGGA+AGG 0.632540 4.3:+84773159 None:intergenic
GTAATCAATTAGACCGATGA+CGG 0.632621 4.3:+84771675 None:intergenic
AAATCCTGTTGGAAATGTGA+TGG 0.641906 4.3:-84770347 MS.gene033981:CDS
TGTCTCTAGGCCAAACACAT+CGG 0.641936 4.3:-84771317 MS.gene033981:CDS
CGCCGCGTACAAATTGTGGA+AGG 0.645147 4.3:-84771650 MS.gene033981:CDS
ATTGTGACATACCTGAGGAA+TGG 0.655621 4.3:+84775547 None:intergenic
GTGACTGGCATAGACACAAG+TGG 0.658709 4.3:-84770831 MS.gene033981:CDS
TGGCTGACATTTCATCATCG+TGG 0.662573 4.3:-84770252 MS.gene033981:CDS
TTCACTTCAGAACTACCAAG+TGG 0.666825 4.3:-84772015 MS.gene033981:CDS
TCTCTCAGTAGGAGAAGCTG+TGG 0.666976 4.3:-84770272 MS.gene033981:CDS
AACCTTCCACAATTTGTACG+CGG 0.697031 4.3:+84771648 None:intergenic
GACATACCTGAGGAATGGCG+AGG 0.698146 4.3:+84775552 None:intergenic
AAAAGATAAAGACTATACTG+AGG 0.705367 4.3:+84775611 None:intergenic
GAACGCGTAGTAGCTCTCAA+CGG 0.707776 4.3:-84770983 MS.gene033981:CDS
TTCGGTGTGTAATAGAACAG+CGG 0.721473 4.3:+84771727 None:intergenic
TGTATTCAAGGAAAGAGACG+AGG 0.732725 4.3:-84774123 MS.gene033981:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTGATAAATAGT+TGG + chr4.3:84772712-84772731 None:intergenic 10.0%
!! AAGAAAAAAAAAAACTATAA+TGG + chr4.3:84770921-84770940 None:intergenic 10.0%
!! ATATGAAAAATTCTTATATA+TGG - chr4.3:84773061-84773080 MS.gene033981:intron 10.0%
!! ATATGTTCATTAAAAAAATT+AGG - chr4.3:84772677-84772696 MS.gene033981:intron 10.0%
!! ATGTTTAAGAATATATAATT+TGG - chr4.3:84775405-84775424 MS.gene033981:intron 10.0%
!! TATACTAAAATATTATGAAA+TGG + chr4.3:84771592-84771611 None:intergenic 10.0%
!! TTATTAAAAATTCGTAAAAT+GGG - chr4.3:84770718-84770737 MS.gene033981:intron 10.0%
!! TTTATTAAAAATTCGTAAAA+TGG - chr4.3:84770717-84770736 MS.gene033981:intron 10.0%
!!! AAAAATCAAAAAATTTCTTT+TGG + chr4.3:84770983-84771002 None:intergenic 10.0%
!!! AAATATTTTTAATCATCTTA+CGG + chr4.3:84774657-84774676 None:intergenic 10.0%
!!! AATTTTTTTAATGAACATAT+AGG + chr4.3:84772677-84772696 None:intergenic 10.0%
!!! ATATTTTATATGGATATATA+TGG - chr4.3:84771734-84771753 MS.gene033981:CDS 10.0%
!! AAAATAAAAATAACCTTTGA+AGG - chr4.3:84771795-84771814 MS.gene033981:CDS 15.0%
!! AATAAGCTAAAAACAATATA+TGG - chr4.3:84775566-84775585 MS.gene033981:CDS 15.0%
!! AATTATGTAAGAAAATATAG+TGG + chr4.3:84772088-84772107 None:intergenic 15.0%
!!! AAAATCAAACTTTTATATTG+TGG - chr4.3:84770800-84770819 MS.gene033981:CDS 15.0%
!!! AACAAAAAAGTATATGTATT+TGG - chr4.3:84774974-84774993 MS.gene033981:intron 15.0%
!!! AGTTGAGAATATTTTTTAAA+AGG - chr4.3:84772057-84772076 MS.gene033981:intron 15.0%
!!! ATTTTTAAAATCAAACTTTC+AGG - chr4.3:84774247-84774266 MS.gene033981:CDS 15.0%
!!! ATTTTTTATTTTTTTTGCAG+TGG - chr4.3:84772881-84772900 MS.gene033981:intron 15.0%
!!! ATTTTTTTGTTGACAATAAT+TGG + chr4.3:84772533-84772552 None:intergenic 15.0%
!!! GTGGATTTTTATTTTTATAT+TGG - chr4.3:84771109-84771128 MS.gene033981:intron 15.0%
!!! GTTGAGAATATTTTTTAAAA+GGG - chr4.3:84772058-84772077 MS.gene033981:intron 15.0%
!!! TGAAATAATTTTTACATTGA+CGG + chr4.3:84774617-84774636 None:intergenic 15.0%
!!! TGAATTTTTCAAATCTTTTT+AGG - chr4.3:84774729-84774748 MS.gene033981:intron 15.0%
!!! TTCATTGGTAATATTTTATA+TGG - chr4.3:84771724-84771743 MS.gene033981:CDS 15.0%
!! AATTAAAAGTTACCCTTAAT+TGG + chr4.3:84772606-84772625 None:intergenic 20.0%
!! ATTGAATAGTTAGTCAATTA+AGG - chr4.3:84772755-84772774 MS.gene033981:intron 20.0%
!! GAAAATTAAAGATGAAACTT+TGG - chr4.3:84771669-84771688 MS.gene033981:CDS 20.0%
!! GTATTAATAGTAATACTAGT+TGG - chr4.3:84772308-84772327 MS.gene033981:intron 20.0%
!! TACTAACATAATCCAATAAT+TGG + chr4.3:84771066-84771085 None:intergenic 20.0%
!! TGTTTACATTTATGATTGAT+TGG - chr4.3:84775714-84775733 MS.gene033981:CDS 20.0%
!! TTGAATAGTTAGTCAATTAA+GGG - chr4.3:84772756-84772775 MS.gene033981:intron 20.0%
!!! AGAATATTTTTTAAAAGGGA+CGG - chr4.3:84772062-84772081 MS.gene033981:intron 20.0%
!!! AGTTTTAGTAAAAAAATTCC+AGG + chr4.3:84773608-84773627 None:intergenic 20.0%
!!! AGTTTTTTTTTTTCTTTTCG+AGG - chr4.3:84770925-84770944 MS.gene033981:intron 20.0%
!!! ATTTTTCAAATCTTTTTAGG+TGG - chr4.3:84774732-84774751 MS.gene033981:intron 20.0%
!!! CTATTTTGCTTTTTTTTCTT+TGG - chr4.3:84773422-84773441 MS.gene033981:intron 20.0%
!!! GTTTTAGTAAAAAAATTCCA+GGG + chr4.3:84773607-84773626 None:intergenic 20.0%
!!! TATTTCTGATTGGATTTTAA+TGG + chr4.3:84770277-84770296 None:intergenic 20.0%
!!! TTTTATGATTCTATCATGAA+TGG - chr4.3:84772728-84772747 MS.gene033981:intron 20.0%
! AAAAGATAAAGACTATACTG+AGG + chr4.3:84770492-84770511 None:intergenic 25.0%
! AAAATATCTACAAAAGTAGC+TGG + chr4.3:84772474-84772493 None:intergenic 25.0%
! AAATATCTACAAAAGTAGCT+GGG + chr4.3:84772473-84772492 None:intergenic 25.0%
! ACCAATATAAAGAAGCTATA+AGG - chr4.3:84774848-84774867 MS.gene033981:CDS 25.0%
! ACTCTTCAAAACATTCTTAT+AGG - chr4.3:84772389-84772408 MS.gene033981:intron 25.0%
! AGCAGTATCAAATATAATCA+TGG - chr4.3:84774315-84774334 MS.gene033981:intron 25.0%
! ATCCTTTGTAAAAACAGAAA+AGG + chr4.3:84774580-84774599 None:intergenic 25.0%
! ATGACTAATAGTATTATGCA+AGG + chr4.3:84770845-84770864 None:intergenic 25.0%
! CACTAAAAGTAACAAAAGTA+GGG + chr4.3:84773230-84773249 None:intergenic 25.0%
! CTTGCAATTTGCATAATATA+TGG - chr4.3:84772981-84773000 MS.gene033981:CDS 25.0%
! TAACATAATCCAATAATTGG+TGG + chr4.3:84771063-84771082 None:intergenic 25.0%
! TACAAATTGCCTTATAAATG+TGG + chr4.3:84775001-84775020 None:intergenic 25.0%
! TCAATTGCATCATTAGTTAT+GGG - chr4.3:84771253-84771272 MS.gene033981:CDS 25.0%
! TCCAATTCTCTATCTTAAAT+TGG - chr4.3:84771312-84771331 MS.gene033981:CDS 25.0%
! TCCTTATAGCTTCTTTATAT+TGG + chr4.3:84774852-84774871 None:intergenic 25.0%
! TCTCATTGAAAAGACTAAAA+TGG + chr4.3:84773170-84773189 None:intergenic 25.0%
! TTCAATTGCATCATTAGTTA+TGG - chr4.3:84771252-84771271 MS.gene033981:CDS 25.0%
! TTTAACATCTCTTGTATGTT+TGG + chr4.3:84773379-84773398 None:intergenic 25.0%
!! ATAGTTTTCATAAGCTATCT+TGG - chr4.3:84775531-84775550 MS.gene033981:intron 25.0%
!! TTTGACTTTCTATATCACAA+GGG - chr4.3:84772499-84772518 MS.gene033981:intron 25.0%
!! TTTTCATAAGCTATCATGAA+GGG - chr4.3:84773731-84773750 MS.gene033981:intron 25.0%
!! TTTTTCATAAGCTATCATGA+AGG - chr4.3:84773730-84773749 MS.gene033981:intron 25.0%
!!! CTTTATATTGGTTTAGGTTA+TGG + chr4.3:84774840-84774859 None:intergenic 25.0%
!!! CTTTTTTTTCTTTGGAAGAT+TGG - chr4.3:84773430-84773449 MS.gene033981:intron 25.0%
!!! TAGCTTCTTTATATTGGTTT+AGG + chr4.3:84774846-84774865 None:intergenic 25.0%
!!! TCAAATATTTTGGATTCCTT+TGG - chr4.3:84775790-84775809 MS.gene033981:CDS 25.0%
!!! TCTCTTTTTGTATTTTTGCA+GGG - chr4.3:84771009-84771028 MS.gene033981:CDS 25.0%
!!! TGGATTTTAATGGTTTCAAA+AGG + chr4.3:84770267-84770286 None:intergenic 25.0%
!!! TGTGATTGATTTTCTATCAA+AGG - chr4.3:84771836-84771855 MS.gene033981:intron 25.0%
!!! TTCTCTTTTTGTATTTTTGC+AGG - chr4.3:84771008-84771027 MS.gene033981:CDS 25.0%
!!! TTTCTTTTCTAGTAGTCTAA+CGG + chr4.3:84772229-84772248 None:intergenic 25.0%
AACAAAGAAATGATGGCTAT+TGG - chr4.3:84774113-84774132 MS.gene033981:intron 30.0%
AAGTACAACATGTTTGATGA+TGG + chr4.3:84773481-84773500 None:intergenic 30.0%
AATAAAGAGAACACCAAAGA+AGG + chr4.3:84774509-84774528 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr4.3:84773762-84773781 MS.gene033981:intron 30.0%
ACACTTACATTTGCATCAAT+GGG + chr4.3:84772810-84772829 None:intergenic 30.0%
ACATAATCATTAATCAACCC+TGG - chr4.3:84773587-84773606 MS.gene033981:intron 30.0%
ACTAATGATGCAATTGAAAC+AGG + chr4.3:84771250-84771269 None:intergenic 30.0%
ATACAATCCTTTCATTCCAA+AGG + chr4.3:84775809-84775828 None:intergenic 30.0%
ATACATTATGCGAACTTAGA+AGG - chr4.3:84775297-84775316 MS.gene033981:intron 30.0%
GAAACTGAATCCTAGTAAAA+TGG + chr4.3:84772917-84772936 None:intergenic 30.0%
GAAATCTTAGATTCAAACTC+TGG + chr4.3:84772173-84772192 None:intergenic 30.0%
GACAAAATAACTGAAGTCAA+TGG + chr4.3:84773145-84773164 None:intergenic 30.0%
GATAGCTTATGAAAACTATG+CGG + chr4.3:84775530-84775549 None:intergenic 30.0%
GCACTAAAAGTAACAAAAGT+AGG + chr4.3:84773231-84773250 None:intergenic 30.0%
GCTTTGATATATTCAGTACT+TGG - chr4.3:84771199-84771218 MS.gene033981:CDS 30.0%
GGATATATATGGTACAATAG+AGG - chr4.3:84771745-84771764 MS.gene033981:CDS 30.0%
GTATTTGGTCCACATTTATA+AGG - chr4.3:84774989-84775008 MS.gene033981:intron 30.0%
TAACTCAATATGTCCATTCA+AGG + chr4.3:84772578-84772597 None:intergenic 30.0%
TACACTTACATTTGCATCAA+TGG + chr4.3:84772811-84772830 None:intergenic 30.0%
TACCAACTGAACTATACTTA+CGG + chr4.3:84772125-84772144 None:intergenic 30.0%
TATTATCTAACCTTTCTTGC+AGG + chr4.3:84774933-84774952 None:intergenic 30.0%
TGAAACTTTGGCAATTTGAT+TGG - chr4.3:84771681-84771700 MS.gene033981:CDS 30.0%
TGTTTATACTTAAGTCGAGA+TGG + chr4.3:84774958-84774977 None:intergenic 30.0%
TTAATACACCAAGAGAAGAT+TGG + chr4.3:84771369-84771388 None:intergenic 30.0%
TTCAAAAGGATCAACTCTAT+TGG + chr4.3:84770253-84770272 None:intergenic 30.0%
TTGATTGGAAGTTAACATGA+AGG - chr4.3:84771696-84771715 MS.gene033981:CDS 30.0%
! AATCTTCTCTTGGTGTATTA+AGG - chr4.3:84771368-84771387 MS.gene033981:intron 30.0%
! AGTACTGAATATATCAAAGC+AGG + chr4.3:84771199-84771218 None:intergenic 30.0%
! CTTTGACTTTCTATATCACA+AGG - chr4.3:84772498-84772517 MS.gene033981:intron 30.0%
! GATACATTGGTATTTCTGAT+TGG + chr4.3:84770287-84770306 None:intergenic 30.0%
! GATTCCTGCATTTATCATTT+TGG - chr4.3:84774870-84774889 MS.gene033981:CDS 30.0%
! GCCAATTTAAGATAGAGAAT+TGG + chr4.3:84771316-84771335 None:intergenic 30.0%
! GCTGAAATCCAGAATAATTT+TGG + chr4.3:84773115-84773134 None:intergenic 30.0%
! GGTTTTTGAATCCATGAAAA+GGG + chr4.3:84770407-84770426 None:intergenic 30.0%
! GTTGCATGAGTCAAATATTT+TGG - chr4.3:84775780-84775799 MS.gene033981:CDS 30.0%
! TGCATAATTTTAGACATGAC+AGG - chr4.3:84775153-84775172 MS.gene033981:intron 30.0%
! TGGTTTAGGTTATGGAATAT+TGG + chr4.3:84774832-84774851 None:intergenic 30.0%
! TGGTTTTTGAATCCATGAAA+AGG + chr4.3:84770408-84770427 None:intergenic 30.0%
! TTATGATTGAGTTTGCTTAC+TGG - chr4.3:84772444-84772463 MS.gene033981:intron 30.0%
! TTGACTGTTTCTCTTTCTTT+AGG - chr4.3:84775067-84775086 MS.gene033981:CDS 30.0%
! TTTTCAGAAATAAACCCACA+TGG + chr4.3:84771654-84771673 None:intergenic 30.0%
! TTTTCTATCAAAGGCAACAT+TGG - chr4.3:84771845-84771864 MS.gene033981:intron 30.0%
!! AACATGAAGGCTATTTTCAT+TGG - chr4.3:84771709-84771728 MS.gene033981:CDS 30.0%
!! ACATGTTCCCTATTTTTCAA+TGG - chr4.3:84770463-84770482 MS.gene033981:intron 30.0%
!! ATGTCTAAGTTTTTGAAGAG+TGG + chr4.3:84770355-84770374 None:intergenic 30.0%
!! ATGTTCCCTATTTTTCAATG+GGG - chr4.3:84770465-84770484 MS.gene033981:intron 30.0%
!! CATGTTCCCTATTTTTCAAT+GGG - chr4.3:84770464-84770483 MS.gene033981:intron 30.0%
!! TTTCTTTAGGATACTGAGAT+GGG - chr4.3:84775080-84775099 MS.gene033981:intron 30.0%
!!! GAATGTTTTGAAGAGTTTTG+TGG + chr4.3:84772385-84772404 None:intergenic 30.0%
!!! TATTTTTTTTGCAGTGGTCA+TGG - chr4.3:84772887-84772906 MS.gene033981:intron 30.0%
!!! TGTTACTTTTAGTGCATGTT+TGG - chr4.3:84773236-84773255 MS.gene033981:intron 30.0%
AAAGGATTGTATCTCTCAGT+AGG - chr4.3:84775817-84775836 MS.gene033981:CDS 35.0%
AAAGTTACCCTTAATTGGCT+AGG + chr4.3:84772601-84772620 None:intergenic 35.0%
AAATCCTGTTGGAAATGTGA+TGG - chr4.3:84775753-84775772 MS.gene033981:CDS 35.0%
AACTTACTTATGTTCCAGGA+AGG - chr4.3:84774038-84774057 MS.gene033981:intron 35.0%
AAGATTGGTGAATTGCCAAA+GGG - chr4.3:84773445-84773464 MS.gene033981:intron 35.0%
ACAGCCAAAATGATAAATGC+AGG + chr4.3:84774877-84774896 None:intergenic 35.0%
ACCAACTGAACTATACTTAC+GGG + chr4.3:84772124-84772143 None:intergenic 35.0%
ACCAATGTATCAATCACCAT+TGG - chr4.3:84770296-84770315 MS.gene033981:CDS 35.0%
ATCACCATTGGAAATTCACA+AGG - chr4.3:84770308-84770327 MS.gene033981:CDS 35.0%
ATGCATGCAAGATGAAACTA+TGG + chr4.3:84770870-84770889 None:intergenic 35.0%
CTTCAACTTACTTATGTTCC+AGG - chr4.3:84774034-84774053 MS.gene033981:intron 35.0%
GAAACAGTCAAAAAATGCCT+CGG + chr4.3:84775058-84775077 None:intergenic 35.0%
GAAACTTTGTGAAGGAAGTT+TGG + chr4.3:84770428-84770447 None:intergenic 35.0%
GAATAAACCAGCAAAGAAAG+TGG + chr4.3:84771347-84771366 None:intergenic 35.0%
GAGCATATGAAAACAGCTTA+TGG - chr4.3:84773815-84773834 MS.gene033981:intron 35.0%
GCACTTACATTTGCATCAAT+AGG + chr4.3:84772645-84772664 None:intergenic 35.0%
GGATGGAAACAAAGAAATGA+TGG - chr4.3:84774106-84774125 MS.gene033981:intron 35.0%
GGTTTATTCCAATCTTCTCT+TGG - chr4.3:84771358-84771377 MS.gene033981:intron 35.0%
GTAATCAATTAGACCGATGA+CGG + chr4.3:84774428-84774447 None:intergenic 35.0%
GTTGTATGCAACTACAATTG+TGG + chr4.3:84770647-84770666 None:intergenic 35.0%
TAACCTGTATACACCTTCAA+AGG + chr4.3:84771811-84771830 None:intergenic 35.0%
TCAAACATGTTGTACTTCAG+TGG - chr4.3:84773484-84773503 MS.gene033981:intron 35.0%
TCAAGGCAGAATCAGAAAAA+AGG + chr4.3:84772561-84772580 None:intergenic 35.0%
TCAGGTATGTCACAATATCA+AGG - chr4.3:84770560-84770579 MS.gene033981:intron 35.0%
TCCAATGGTGATTGATACAT+TGG + chr4.3:84770300-84770319 None:intergenic 35.0%
TCTTCATGTTATGTCACAAC+AGG - chr4.3:84774161-84774180 MS.gene033981:CDS 35.0%
TGAAGAGGCCAAAATTATTC+TGG - chr4.3:84773104-84773123 MS.gene033981:intron 35.0%
TGAGTTACCTAGCCAATTAA+GGG - chr4.3:84772591-84772610 MS.gene033981:CDS 35.0%
TGTCACTACAACAACTCAAA+GGG - chr4.3:84771898-84771917 MS.gene033981:intron 35.0%
TTATGAAAACTATGCGGCTT+TGG + chr4.3:84775524-84775543 None:intergenic 35.0%
TTCAGCTTATTAAGCTCTCT+AGG - chr4.3:84773855-84773874 MS.gene033981:intron 35.0%
TTCCTTCACAAAGTTTCTTC+TGG - chr4.3:84770431-84770450 MS.gene033981:intron 35.0%
TTGAATACAGAGACCAAAAC+AGG + chr4.3:84771966-84771985 None:intergenic 35.0%
TTGAGTTACCTAGCCAATTA+AGG - chr4.3:84772590-84772609 MS.gene033981:CDS 35.0%
TTGATATTGTGACATACCTG+AGG + chr4.3:84770561-84770580 None:intergenic 35.0%
TTTCGCTCCGATATTATATC+CGG - chr4.3:84770510-84770529 MS.gene033981:intron 35.0%
! ACATTTCAAAGATTAGTCCG+AGG - chr4.3:84775038-84775057 MS.gene033981:intron 35.0%
! ATAATTGTTTTCCCACCATG+TGG - chr4.3:84771636-84771655 MS.gene033981:CDS 35.0%
! CAATGTGTCTTGTTATCAAC+AGG + chr4.3:84772948-84772967 None:intergenic 35.0%
! CGTAGCTTTTGACAAAATCA+CGG - chr4.3:84773318-84773337 MS.gene033981:intron 35.0%
! GATGCAAATAGTACCTGTTT+TGG - chr4.3:84771950-84771969 MS.gene033981:CDS 35.0%
! TAACCTTTGAAGGTGTATAC+AGG - chr4.3:84771805-84771824 MS.gene033981:CDS 35.0%
! TAATTGTTTTCCCACCATGT+GGG - chr4.3:84771637-84771656 MS.gene033981:CDS 35.0%
! TCATGGCAAACCATTTTACT+AGG - chr4.3:84772904-84772923 MS.gene033981:intron 35.0%
! TTTCTTTGTTTCCATCCACT+TGG + chr4.3:84774103-84774122 None:intergenic 35.0%
! TTTGAAGGTGTATACAGGTT+AGG - chr4.3:84771810-84771829 MS.gene033981:CDS 35.0%
! TTTTCCATCACATTTCCAAC+AGG + chr4.3:84775760-84775779 None:intergenic 35.0%
! TTTTCTGATTCTGCCTTGAA+TGG - chr4.3:84772562-84772581 MS.gene033981:CDS 35.0%
!! ATTGGTCTTATGAACATAGC+TGG - chr4.3:84774131-84774150 MS.gene033981:CDS 35.0%
!! CTTTCTTTAGGATACTGAGA+TGG - chr4.3:84775079-84775098 MS.gene033981:intron 35.0%
!! GCTACCAGAAGCATTATTAT+AGG - chr4.3:84772145-84772164 MS.gene033981:intron 35.0%
!! TACAACATGTTTGATGATGG+TGG + chr4.3:84773478-84773497 None:intergenic 35.0%
!! TTGGATTCCTTTGGAATGAA+AGG - chr4.3:84775799-84775818 MS.gene033981:CDS 35.0%
!! TTTTGAAGAGTGGTTCTTTG+TGG + chr4.3:84770345-84770364 None:intergenic 35.0%
!!! CGCCTTTTCTGTTTTTACAA+AGG - chr4.3:84774575-84774594 MS.gene033981:intron 35.0%
!!! TGTTTTGGTCTCTGTATTCA+AGG - chr4.3:84771965-84771984 MS.gene033981:CDS 35.0%
!!! TTCTCTGTTTTGTTTTGCTG+TGG - chr4.3:84771090-84771109 MS.gene033981:intron 35.0%
AAATAAGCGCTTAGAGCGTA+AGG - chr4.3:84773639-84773658 MS.gene033981:intron 40.0%
AAATCCTGCTTCATGTCTCT+AGG - chr4.3:84774770-84774789 MS.gene033981:CDS 40.0%
AACCTTCCACAATTTGTACG+CGG + chr4.3:84774455-84774474 None:intergenic 40.0%
AACTACAATTGTGGTCGCAT+CGG + chr4.3:84770638-84770657 None:intergenic 40.0%
AAGCTATCTTGGAGAGCTTA+TGG - chr4.3:84775542-84775561 MS.gene033981:intron 40.0%
AAGTTCTTGCAAGCATGATG+TGG - chr4.3:84770689-84770708 MS.gene033981:intron 40.0%
AATAAGCGCTTAGAGCGTAA+GGG - chr4.3:84773640-84773659 MS.gene033981:intron 40.0%
AATCCATGAAAAGGGTCATC+AGG + chr4.3:84770399-84770418 None:intergenic 40.0%
ACTGGAGCAAAAATCACTTC+AGG - chr4.3:84775322-84775341 MS.gene033981:intron 40.0%
AGCCAGAAGAAACTTTGTGA+AGG + chr4.3:84770436-84770455 None:intergenic 40.0%
AGTCACGGCTGAAAAAGAAA+AGG + chr4.3:84775255-84775274 None:intergenic 40.0%
ATCAAAACTGGACTTGTCAC+TGG - chr4.3:84773526-84773545 MS.gene033981:intron 40.0%
ATGCAACTTACCTGCAAGAA+AGG - chr4.3:84774920-84774939 MS.gene033981:CDS 40.0%
ATTATCATCACTGCCGTCAT+CGG - chr4.3:84774412-84774431 MS.gene033981:intron 40.0%
ATTGTGACATACCTGAGGAA+TGG + chr4.3:84770556-84770575 None:intergenic 40.0%
CAGAAATAAACCCACATGGT+GGG + chr4.3:84771650-84771669 None:intergenic 40.0%
CGAACCTTGTGAATTTCCAA+TGG + chr4.3:84770315-84770334 None:intergenic 40.0%
CTATCAAAGGCAACATTGGT+AGG - chr4.3:84771849-84771868 MS.gene033981:intron 40.0%
GAAGATTGGTGAATTGCCAA+AGG - chr4.3:84773444-84773463 MS.gene033981:intron 40.0%
GAGGACCCCATTGAAAAATA+GGG + chr4.3:84770473-84770492 None:intergenic 40.0%
GCAAACTTGCCACCAATTAT+TGG - chr4.3:84771051-84771070 MS.gene033981:intron 40.0%
GGCTCCTATAATAATGCTTC+TGG + chr4.3:84772152-84772171 None:intergenic 40.0%
GGTGAGACCGGATATAATAT+CGG + chr4.3:84770520-84770539 None:intergenic 40.0%
TACTCATGCGATGCAAAATG+AGG + chr4.3:84775358-84775377 None:intergenic 40.0%
TCAGAAATAAACCCACATGG+TGG + chr4.3:84771651-84771670 None:intergenic 40.0%
TCCCGTAAGTATAGTTCAGT+TGG - chr4.3:84772120-84772139 MS.gene033981:intron 40.0%
TGAGGACCCCATTGAAAAAT+AGG + chr4.3:84770474-84770493 None:intergenic 40.0%
TGCTCCAGCATTGTAGTTAA+CGG + chr4.3:84774290-84774309 None:intergenic 40.0%
TGTATTCAAGGAAAGAGACG+AGG - chr4.3:84771977-84771996 MS.gene033981:CDS 40.0%
TTCACTTCAGAACTACCAAG+TGG - chr4.3:84774085-84774104 MS.gene033981:intron 40.0%
TTCTTGCAGGTAAGTTGCAT+TGG + chr4.3:84774920-84774939 None:intergenic 40.0%
TTGTTATCAACAGGAAGGCT+AGG + chr4.3:84772939-84772958 None:intergenic 40.0%
TTTCCCAAAACCGATGTGTT+TGG + chr4.3:84774796-84774815 None:intergenic 40.0%
! AGCTTTTGACAAAATCACGG+TGG - chr4.3:84773321-84773340 MS.gene033981:intron 40.0%
! AGTTGCATTGGCAAAGTAGA+TGG + chr4.3:84774908-84774927 None:intergenic 40.0%
! GTGTCACTACAACAACTCAA+AGG - chr4.3:84771897-84771916 MS.gene033981:intron 40.0%
! GTGTCTTGTTATCAACAGGA+AGG + chr4.3:84772944-84772963 None:intergenic 40.0%
! GTTGCATTGGCAAAGTAGAT+GGG + chr4.3:84774907-84774926 None:intergenic 40.0%
! GTTTGACTTTGACGAGATCA+TGG - chr4.3:84773265-84773284 MS.gene033981:intron 40.0%
! GTTTGGATTCGCTCTAAGTT+CGG + chr4.3:84773362-84773381 None:intergenic 40.0%
! TTATGGAATATTGGTGTCCC+TGG + chr4.3:84774823-84774842 None:intergenic 40.0%
! TTCAGGATCCTTTTCTCGAT+CGG - chr4.3:84774264-84774283 MS.gene033981:CDS 40.0%
! TTCGGTGTGTAATAGAACAG+CGG + chr4.3:84774376-84774395 None:intergenic 40.0%
! TTGATAGCAAGAGCCAAATG+AGG + chr4.3:84773511-84773530 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+TGG - chr4.3:84773514-84773533 MS.gene033981:intron 40.0%
! TTTCCTGATGACCCTTTTCA+TGG - chr4.3:84770393-84770412 MS.gene033981:intron 40.0%
!! AGTTCTAGACATCTTGGTGT+TGG - chr4.3:84771223-84771242 MS.gene033981:CDS 40.0%
!! CTTGGAAGTTCTAGACATCT+TGG - chr4.3:84771217-84771236 MS.gene033981:CDS 40.0%
!!! TTTTCTTTTTCAGCCGTGAC+TGG - chr4.3:84775254-84775273 MS.gene033981:intron 40.0%
AATCGTGACAGAGCTTGAAG+AGG - chr4.3:84773089-84773108 MS.gene033981:intron 45.0%
ACATTGGTAGGTTTCATGGC+TGG - chr4.3:84771861-84771880 MS.gene033981:intron 45.0%
ACTTGTGTCTATGCCAGTCA+CGG + chr4.3:84775270-84775289 None:intergenic 45.0%
ATGCGAACTTAGAAGGAGAC+TGG - chr4.3:84775304-84775323 MS.gene033981:intron 45.0%
ATGGCTGCTAAGACAACGTT+CGG + chr4.3:84774394-84774413 None:intergenic 45.0%
CAACAACTCAAAGGGTTGCT+AGG - chr4.3:84771906-84771925 MS.gene033981:intron 45.0%
CTTCAGAACTACCAAGTGGA+TGG - chr4.3:84774089-84774108 MS.gene033981:intron 45.0%
GGCAACATTGGTAGGTTTCA+TGG - chr4.3:84771857-84771876 MS.gene033981:intron 45.0%
GTACTTCAGTGGTCCTCATT+TGG - chr4.3:84773495-84773514 MS.gene033981:intron 45.0%
TGAAGAGTGGTTCTTTGTGG+TGG + chr4.3:84770342-84770361 None:intergenic 45.0%
TGGCTGACATTTCATCATCG+TGG - chr4.3:84775848-84775867 MS.gene033981:CDS 45.0%
TGTCTCTAGGCCAAACACAT+CGG - chr4.3:84774783-84774802 MS.gene033981:CDS 45.0%
TTCCAACTGCAATTCCTTCC+TGG + chr4.3:84774055-84774074 None:intergenic 45.0%
TTCCAGGAAGGAATTGCAGT+TGG - chr4.3:84774050-84774069 MS.gene033981:intron 45.0%
TTGATTGGTGCAGCTTGTGT+TGG - chr4.3:84775729-84775748 MS.gene033981:CDS 45.0%
! CTTGTGTTGGCAAATCCTGT+TGG - chr4.3:84775742-84775761 MS.gene033981:CDS 45.0%
! GATGACGGCAGTGATGATAA+TGG + chr4.3:84774413-84774432 None:intergenic 45.0%
!! GATGGTGGATTAAGTCCCTT+TGG + chr4.3:84773463-84773482 None:intergenic 45.0%
!! TTCACTGCCACTTTCTTTGC+TGG - chr4.3:84771337-84771356 MS.gene033981:CDS 45.0%
!!! AGGCCAAACACATCGGTTTT+GGG - chr4.3:84774790-84774809 MS.gene033981:CDS 45.0%
!!! CGGTTTTGGGAAACATTCCA+GGG - chr4.3:84774803-84774822 MS.gene033981:CDS 45.0%
!!! TAGGCCAAACACATCGGTTT+TGG - chr4.3:84774789-84774808 MS.gene033981:CDS 45.0%
!!! TCGGTTTTGGGAAACATTCC+AGG - chr4.3:84774802-84774821 MS.gene033981:CDS 45.0%
!! AAAATTGTTAAAAAAATTAA+TGG + chr4.3:84772866-84772885 None:intergenic 5.0%
GAACGCGTAGTAGCTCTCAA+CGG - chr4.3:84775117-84775136 MS.gene033981:intron 50.0%
GCTTGTGTGTGCTCCTTCTT+TGG - chr4.3:84774493-84774512 MS.gene033981:intron 50.0%
GTGACTGGCATAGACACAAG+TGG - chr4.3:84775269-84775288 MS.gene033981:intron 50.0%
GTTAACGGCCGATCGAGAAA+AGG + chr4.3:84774275-84774294 None:intergenic 50.0%
TCGGCCGTTAACTACAATGC+TGG - chr4.3:84774283-84774302 MS.gene033981:intron 50.0%
TCTCTCAGTAGGAGAAGCTG+TGG - chr4.3:84775828-84775847 MS.gene033981:CDS 50.0%
TGGTGGCAAGTTTGCAAGCT+TGG + chr4.3:84771046-84771065 None:intergenic 50.0%
TTGGCCTAGAGACATGAAGC+AGG + chr4.3:84774777-84774796 None:intergenic 50.0%
! ACTGAGATGGGTTCGAGAAG+AGG - chr4.3:84775092-84775111 MS.gene033981:intron 50.0%
AGGAATGGCGAGGCTAGCAA+TGG + chr4.3:84770541-84770560 None:intergenic 55.0%
CGCCGCGTACAAATTGTGGA+AGG - chr4.3:84774450-84774469 MS.gene033981:intron 55.0%
GACATACCTGAGGAATGGCG+AGG + chr4.3:84770551-84770570 None:intergenic 55.0%
GAGGCTAGCAATGGTGAGAC+CGG + chr4.3:84770532-84770551 None:intergenic 55.0%
TCCACAATTTGTACGCGGCG+CGG + chr4.3:84774450-84774469 None:intergenic 55.0%
TGAAGCTTACCGCGACTCCA+AGG + chr4.3:84774546-84774565 None:intergenic 55.0%
ACCGCGCCGCGTACAAATTG+TGG - chr4.3:84774446-84774465 MS.gene033981:intron 60.0%
! TGCTAGCCTCGCCATTCCTC+AGG - chr4.3:84770542-84770561 MS.gene033981:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 84770237 84775885 84770237 ID=MS.gene033981
chr4.3 mRNA 84770237 84775885 84770237 ID=MS.gene033981.t1;Parent=MS.gene033981
chr4.3 exon 84775559 84775885 84775559 ID=MS.gene033981.t1.exon1;Parent=MS.gene033981.t1
chr4.3 CDS 84775559 84775885 84775559 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84775044 84775092 84775044 ID=MS.gene033981.t1.exon2;Parent=MS.gene033981.t1
chr4.3 CDS 84775044 84775092 84775044 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84774733 84774940 84774733 ID=MS.gene033981.t1.exon3;Parent=MS.gene033981.t1
chr4.3 CDS 84774733 84774940 84774733 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84774124 84774295 84774124 ID=MS.gene033981.t1.exon4;Parent=MS.gene033981.t1
chr4.3 CDS 84774124 84774295 84774124 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84773156 84773221 84773156 ID=MS.gene033981.t1.exon5;Parent=MS.gene033981.t1
chr4.3 CDS 84773156 84773221 84773156 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84772909 84773022 84772909 ID=MS.gene033981.t1.exon6;Parent=MS.gene033981.t1
chr4.3 CDS 84772909 84773022 84772909 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84772558 84772674 84772558 ID=MS.gene033981.t1.exon7;Parent=MS.gene033981.t1
chr4.3 CDS 84772558 84772674 84772558 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84771940 84772066 84771940 ID=MS.gene033981.t1.exon8;Parent=MS.gene033981.t1
chr4.3 CDS 84771940 84772066 84771940 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84771567 84771853 84771567 ID=MS.gene033981.t1.exon9;Parent=MS.gene033981.t1
chr4.3 CDS 84771567 84771853 84771567 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84771181 84771371 84771181 ID=MS.gene033981.t1.exon10;Parent=MS.gene033981.t1
chr4.3 CDS 84771181 84771371 84771181 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84770948 84771033 84770948 ID=MS.gene033981.t1.exon11;Parent=MS.gene033981.t1
chr4.3 CDS 84770948 84771033 84770948 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84770779 84770855 84770779 ID=MS.gene033981.t1.exon12;Parent=MS.gene033981.t1
chr4.3 CDS 84770779 84770855 84770779 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
chr4.3 exon 84770237 84770380 84770237 ID=MS.gene033981.t1.exon13;Parent=MS.gene033981.t1
chr4.3 CDS 84770237 84770380 84770237 ID=cds.MS.gene033981.t1;Parent=MS.gene033981.t1
Gene Sequence

>MS.gene033981

ATGGGTGTGAATTCCAATAGAGTTGATCCTTTTGAAACCATTAAAATCCAATCAGAAATACCAATGTATCAATCACCATTGGAAATTCACAAGGTTCGTTTACCACCACAAAGAACCACTCTTCAAAAACTTAGACATAGACTCTCTGAAATCTTTTTTCCTGATGACCCTTTTCATGGATTCAAAAACCAAACTTCCTTCACAAAGTTTCTTCTGGCTCTTCAATACATGTTCCCTATTTTTCAATGGGGTCCTCAGTATAGTCTTTATCTTTTTCGCTCCGATATTATATCCGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGTATGTCACAATATCAAGGTTTTAAATTGAAGTCATAGTAACATTTATTAAAAGAGTACATATAGATGTTACCGATGCGACCACAATTGTAGTTGCATACAACGATCTTTCAAACATTGCATAATAAGTTCTTGCAAGCATGATGTGGTTTATTTTATTAAAAATTCGTAAAATGGGAAACTTTTATCAAATAAAATGTTACTAATGACTATTTTACAAACGTTGATTGAAGTTACAAAATCAAACTTTTATATTGTGGTTGAGCTCAATATTTGAGACCTTGCATAATACTATTAGTCATAGCCATAGTTTCATCTTGCATGCATGAGATTGCATTTGTTAATGTATACTATACCATTATAGTTTTTTTTTTTCTTTTCGAGGATATAAGTTAATATTTAATTTAATGAAACTTGCCAAAAGAAATTTTTTGATTTTTTTTCTTTCTCTTTTTGTATTTTTGCAGGGAATCAGTTATGCCAAGCTTGCAAACTTGCCACCAATTATTGGATTATGTTAGTATTCATTCTCTGTTTTGTTTTGCTGTGGATTTTTATTTTTATATTGGTTGATATTTAATTTAATTAAATTTATATATATCATCATTACTACATGCAGATTCAAGTTTTGTGCCTGCTTTGATATATTCAGTACTTGGAAGTTCTAGACATCTTGGTGTTGGTCCTGTTTCAATTGCATCATTAGTTATGGGATCAATGTTAAGTGAAAGTGTTTCTTATAGTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGTTTATTCCAATCTTCTCTTGGTGTATTAAGGTACTAATAATCAATCATGCACAAATTTATATTTTTTCAACAAAAAATAAGATAAATTAGCATAATATCATCACTAAACATAGAACATAAATTAAATTTGAAAGCTTTTTTACAAAAAAATAATAATAGAAAAATAAATAATTTAATTAAGTGCTTATTCAAAAATTATTCTGAAAATCTTATTGAAATAAACTAAAAACCATTTCATAATATTTTAGTATATTATGAAAAAAATAAAAAATTACAATAATTGTTTTCCCACCATGTGGGTTTATTTCTGAAAATTAAAGATGAAACTTTGGCAATTTGATTGGAAGTTAACATGAAGGCTATTTTCATTGGTAATATTTTATATGGATATATATGGTACAATAGAGGTAAAATTATATTTTATGATTAAAAATAAAAATAAAAATAACCTTTGAAGGTGTATACAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCAACATTGGTAGGTTTCATGGCTGGTGCAGCAATAATTGTGTCACTACAACAACTCAAAGGGTTGCTAGGAATAGTTCATTTCACAAGCAAGATGCAAATAGTACCTGTTTTGGTCTCTGTATTCAAGGAAAGAGACGAGGTATATTTTGATTTTGATGTTTTTTTTAATGTTAAAAAATTATACATTAAAGAATCTAAGTTGAGAATATTTTTTAAAAGGGACGGCCACTATATTTTCTTACATAATTTATAATTTAACGTCCCGTAAGTATAGTTCAGTTGGTAGCTACCAGAAGCATTATTATAGGAGCCAGAGTTTGAATCTAAGATTTCTCACTTTTTTACGCATAATGTGTGTAAATCTAGCCGTTAGACTACTAGAAAAGAAATCTAATAAATTATGTTTTGCAAGTTTTTAAAATATTAATTTTTTGAAAGAGTTATTAAAGTATTAATAGTAATACTAGTTGGTAGAGTAAAGCTACAATTGAAAAAATAAAATAAAAAATAAATTAATCACAGCCACAAAACTCTTCAAAACATTCTTATAGGACTGATTCTGTTTTAAGAAATAAGAATTAACATTATGATTGAGTTTGCTTACTGGAATCCCAGCTACTTTTGTAGATATTTTTTTACTTTGACTTTCTATATCACAAGGGATCATATTCCAATTATTGTCAACAAAAAAATATATTCCTTTTTTCTGATTCTGCCTTGAATGGACATATTGAGTTACCTAGCCAATTAAGGGTAACTTTTAATTGAAAATACATAGTTGTCCTATTGATGCAAATGTAAGTGCAATGTATTACCTATATGTTCATTAAAAAAATTAGGAATCATATTCCAACTATTTATCAATTTTTTTTATGATTCTATCATGAATGGACATATTGAATAGTTAGTCAATTAAGGGTCACTTTTAAATGAAAATACATATTTGTCCCATTGATGCAAATGTAAGTGTAATTTAATTAATTATAATTACATACATATATGTCCATTAATTTTTTTAACAATTTTTTATTTTTTTTGCAGTGGTCATGGCAAACCATTTTACTAGGATTCAGTTTCCTAGCCTTCCTGTTGATAACAAGACACATTGTAAGATTCTTCATCTTGCAATTTGCATAATATATGGACTATTGTTTTTTGCTTTGACAAGTGATAATTATTTTAATTTCATTTGTTTCTTAATATATGAAAAATTCTTATATATGGTTTTAAATCGTGACAGAGCTTGAAGAGGCCAAAATTATTCTGGATTTCAGCAGCTGCACCATTGACTTCAGTTATTTTGTCAACCATTTTAGTCTTTTCAATGAGACATAAGATCAATAAAATAGCAATTGTAAGAAAAGACACCCTACTTTTGTTACTTTTAGTGCATGTTTGGAATAATGTTTGACTTTGACGAGATCATGGTCACGTTGTGATTCTGTTGAAGCTTCAAAACGTAGCTTTTGACAAAATCACGGTGGCACACAGTGATTTTACCGAACTTAGAGCGAATCCAAACATACAAGAGATGTTAAATAGAAATGACTTTATTAATAACTCTATTTTGCTTTTTTTTCTTTGGAAGATTGGTGAATTGCCAAAGGGACTTAATCCACCATCATCAAACATGTTGTACTTCAGTGGTCCTCATTTGGCTCTTGCTATCAAAACTGGACTTGTCACTGGAATCTTGTCTCTCACTGTAAGCTTTCTCAAACTTAGAAACATAATCATTAATCAACCCTGGAATTTTTTTACTAAAACTATTAAGTTTTAAAATAAGCGCTTAGAGCGTAAGGGCTTATCATACAAGTGTTTATATATAAGTTACTTCTATAGCAAAAAAAATAAATAATAAAGTCAAACTTTTTTCATAAGCTATCATGAAGGGCTTGAAGAAATAAGCTGAAAACAGCTTATGGACATGTCACTGTTTGCACTGACTTATTAGAGAGCATATGAAAACAGCTTATGGCATGTCTATAAGCTATTTTCAGCTTATTAAGCTCTCTAGGATAACTTATGAAAACAATTATAATTTATATAAAAATAGTTTGACTTTATTTACTCTTTTTCTTCTTTTTTCTTTTTTACAGAAATAGCTTATACATAAACACTCATTGATAAGTACTTATGCTAAACAAAAAAATGAAAAACATTAAACAACTCAACTTCAACTTACTTATGTTCCAGGAAGGAATTGCAGTTGGAAGAACATTTGCTTCACTTCAGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGCAATGATTCATCACAAGTAGTTGTTAAAGAAATCAAAGTTTTTCAAGAAAAATATCAATTCTAATTTTTAAAATCAAACTTTCAGGATCCTTTTCTCGATCGGCCGTTAACTACAATGCTGGAGCACAGACAGCAGTATCAAATATAATCATGGCATCAGCAGTTCTTGTGACACTTCTGTTTCTCATGCCGCTGTTCTATTACACACCGAACGTTGTCTTAGCAGCCATTATCATCACTGCCGTCATCGGTCTAATTGATTACCGCGCCGCGTACAAATTGTGGAAGGTTGACAAGCTTGATTTCTTAGCTTGTGTGTGCTCCTTCTTTGGTGTTCTCTTTATTTCAGTTCCATTAGGCCTTGGAGTCGCGGTAAGCTTCAAAATTCACACGCCTTTTCTGTTTTTACAAAGGATGTAATTCATATACACCGTCAATGTAAAAATTATTTCACTGTCGATCAATCATAACCGTAAGATGATTAAAAATATTTGACTTCAATCATAACTACTATAAAAGCTAAAAATATATTCATTATTGTTCACTGAATTTTTCAAATCTTTTTAGGTGGCAATATCAGTCTTCAAAATCCTGCTTCATGTCTCTAGGCCAAACACATCGGTTTTGGGAAACATTCCAGGGACACCAATATTCCATAACCTAAACCAATATAAAGAAGCTATAAGGATTCCTGCATTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCCAATGCAACTTACCTGCAAGAAAGGTTAGATAATACTCCATCTCGACTTAAGTATAAACAAAAAAGTATATGTATTTGGTCCACATTTATAAGGCAATTTGTATGCTTGTCAAGTTTTGTACATTTCAAAGATTAGTCCGAGGCATTTTTTGACTGTTTCTCTTTCTTTAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACGCGTAGTAGCTCTCAACGGAAGTGCATTGAAATGCATAATTTTAGACATGACAGGTATGTATTTTGTTTCGCTTGCAAAGTTTGTTGTTGAAGTTTTGAGATCGTTTTTGAACTAAAAGTTTAGTGTTTTTCCTTTTCTTTTTCAGCCGTGACTGGCATAGACACAAGTGGAATCGATACATTATGCGAACTTAGAAGGAGACTGGAGCAAAAATCACTTCAGGTAAATATATACCTCATTTTGCATCGCATGAGTAGCAACACTAGTATATACTAATTGTAACATGTTTAAGAATATATAATTTGGATAAACAGCTTAATTAAGCGCTTATAACATACTTGTTTATCATATAAATGCTTATGTATAAGTTATTTCTATTTTCTGTGACAAAAGATAAAACCAAAGCCGCATAGTTTTCATAAGCTATCTTGGAGAGCTTATGGAAATAAGCTAAAAACAATATATGGACATGACATAAACTGTTTCTATAAGCTCTTTTAAACAGTTCACATGTGTTTATGTCACTAGATGAACTTAAATAAATAAATTAAAACATGTCTTGAACTGAATACTTACACAGTTTTGTTTCTAATGTTTACATTTATGATTGATTGGTGCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATGAGTCAAATATTTTGGATTCCTTTGGAATGAAAGGATTGTATCTCTCAGTAGGAGAAGCTGTGGCTGACATTTCATCATCGTGGAAAGCTCAGCCTTGA
Protein sequence

>MS.gene033981.t1

MGVNSNRVDPFETIKIQSEIPMYQSPLEIHKVRLPPQRTTLQKLRHRLSEIFFPDDPFHGFKNQTSFTKFLLALQYMFPIFQWGPQYSLYLFRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSVLGSSRHLGVGPVSIASLVMGSMLSESVSYSQDPILYLKLAFTATFFAGLFQSSLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTSKMQIVPVLVSVFKERDEWSWQTILLGFSFLAFLLITRHISLKRPKLFWISAAAPLTSVILSTILVFSMRHKINKIAIIGELPKGLNPPSSNMLYFSGPHLALAIKTGLVTGILSLTEGIAVGRTFASLQNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYRAAYKLWKVDKLDFLACVCSFFGVLFISVPLGLGVAVAISVFKILLHVSRPNTSVLGNIPGTPIFHNLNQYKEAIRIPAFIILAVESPIYFANATYLQERILRWVREEEERVVALNGSALKCIILDMTAVTGIDTSGIDTLCELRRRLEQKSLQLVLANPVGNVMEKLHESNILDSFGMKGLYLSVGEAVADISSSWKAQP