AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89102.t1 MTR_2g102243 99.382 647 4 0 3 649 1 647 0.0 1309
MS.gene89102.t1 MTR_2g102243 98.116 584 11 0 3 586 1 584 0.0 1164
MS.gene89102.t1 MTR_4g011970 82.317 656 107 2 1 649 1 654 0.0 1115
MS.gene89102.t1 MTR_4g084620 63.968 630 222 3 21 648 14 640 0.0 825
MS.gene89102.t1 MTR_4g084640 62.025 632 238 1 18 649 15 644 0.0 806
MS.gene89102.t1 MTR_7g095430 58.347 629 259 1 14 642 10 635 0.0 753
MS.gene89102.t1 MTR_1g071530 57.232 643 275 0 7 649 3 645 0.0 746
MS.gene89102.t1 MTR_5g061880 53.130 655 299 2 3 649 1 655 0.0 712
MS.gene89102.t1 MTR_7g095430 59.220 564 227 1 14 577 10 570 0.0 690
MS.gene89102.t1 MTR_2g008470 55.267 617 274 2 24 639 34 649 0.0 682
MS.gene89102.t1 MTR_2g008470 55.267 617 274 2 24 639 53 668 0.0 682
MS.gene89102.t1 MTR_3g073780 53.185 628 290 3 25 649 33 659 0.0 672
MS.gene89102.t1 MTR_3g073780 54.595 555 248 3 25 576 33 586 0.0 617
MS.gene89102.t1 MTR_6g086170 48.154 623 317 3 17 638 3 620 0.0 615
MS.gene89102.t1 MTR_3g073780 55.408 527 232 2 25 548 33 559 0.0 596
MS.gene89102.t1 MTR_5g061860 47.554 654 329 6 3 646 1 650 0.0 585
MS.gene89102.t1 MTR_3g087740 49.231 585 293 4 58 639 64 647 0.0 577
MS.gene89102.t1 MTR_3g073730 47.871 587 296 4 72 649 75 660 0.0 538
MS.gene89102.t1 MTR_5g061860 48.381 556 275 4 3 548 1 554 7.28e-176 512
MS.gene89102.t1 MTR_3g087730 41.069 655 358 10 13 647 12 658 4.79e-161 478
MS.gene89102.t1 MTR_7g022870 35.467 578 359 7 65 638 66 633 2.87e-115 361
MS.gene89102.t1 MTR_7g022870 37.103 504 304 6 55 557 56 547 1.09e-105 332
MS.gene89102.t1 MTR_6g024420 31.818 132 71 3 227 358 54 166 1.37e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89102.t1 AT3G15990 76.263 653 151 2 1 649 1 653 0.0 1028
MS.gene89102.t1 AT1G23090 64.355 620 220 1 24 642 3 622 0.0 822
MS.gene89102.t1 AT3G51895 58.643 619 255 1 25 642 20 638 0.0 759
MS.gene89102.t1 AT3G51895 58.643 619 255 1 25 642 65 683 0.0 759
MS.gene89102.t1 AT4G02700 56.331 616 268 1 25 639 10 625 0.0 685
MS.gene89102.t1 AT4G08620 53.760 625 287 2 25 648 23 646 0.0 672
MS.gene89102.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene89102.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene89102.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene89102.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene89102.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene89102.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene89102.t1 AT1G78000 56.897 580 249 1 25 603 28 607 0.0 634
MS.gene89102.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene89102.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene89102.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene89102.t1 AT5G19600 47.611 628 318 4 13 638 2 620 0.0 618
MS.gene89102.t1 AT1G78000 57.143 553 236 1 25 576 28 580 0.0 606
MS.gene89102.t1 AT1G22150 54.770 566 254 2 13 576 18 583 0.0 603
MS.gene89102.t1 AT5G10180 47.557 614 316 5 30 638 57 669 0.0 550
MS.gene89102.t1 AT1G77990 48.443 578 287 5 69 638 89 663 0.0 535
MS.gene89102.t1 AT1G78000 57.759 464 195 1 25 487 28 491 3.34e-174 506
MS.gene89102.t1 AT1G78000 57.079 445 190 1 133 576 1 445 1.15e-162 474
MS.gene89102.t1 AT3G12520 34.202 614 382 11 31 638 13 610 2.62e-113 354
MS.gene89102.t1 AT3G12520 34.135 624 388 12 22 638 19 626 2.95e-113 355
MS.gene89102.t1 AT5G13550 35.253 573 353 8 72 638 79 639 1.10e-112 353
MS.gene89102.t1 AT3G12520 34.070 543 344 9 8 548 5 535 2.29e-100 317

Find 126 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGTTCTGATGTCATTTC+TGG 0.070395 2.4:+2733985 MS.gene89102:CDS
GTTACATATGTCGAAAATTT+TGG 0.105448 2.4:+2738804 MS.gene89102:CDS
TTGGATACCTTTGGATTTAA+AGG 0.129404 2.4:+2738823 MS.gene89102:CDS
GCAAACTTGCCTCCTATTAT+TGG 0.172651 2.4:+2734647 MS.gene89102:CDS
AGTTCCTTCATTTCTCATTT+TGG 0.202383 2.4:+2738127 MS.gene89102:CDS
ACCAGTTTCAATTGCATCTT+TGG 0.216974 2.4:+2734826 MS.gene89102:CDS
TGAGGAAACCAAAACTATTC+TGG 0.222148 2.4:+2736557 MS.gene89102:CDS
CAAACTATTGTTATGGGATT+TGG 0.225265 2.4:+2736356 MS.gene89102:CDS
CTGTTCCTTTCTGTACCTTT+AGG 0.241771 2.4:+2737717 MS.gene89102:CDS
TTCAATTGCATCTTTGGTTA+TGG 0.242829 2.4:+2734832 MS.gene89102:CDS
GGTTGACAAACTTGATTTCT+TGG 0.245825 2.4:+2737668 MS.gene89102:CDS
CTTTGTATTGGTTTATGTTA+TGG 0.247148 2.4:-2738094 None:intergenic
TTCACTGCCACCTTTGTTGC+TGG 0.254252 2.4:+2734917 MS.gene89102:CDS
AGTCTTCCTTCTCAGAAATA+AGG 0.295437 2.4:+2736627 MS.gene89102:CDS
CTCTTAAAGCTTCTTTGTAT+TGG 0.307202 2.4:-2738106 None:intergenic
GCTGAAGCCCAGAATAGTTT+TGG 0.328596 2.4:-2736565 None:intergenic
ATCATTATTGCTGCTGTGAT+TGG 0.334479 2.4:+2737609 MS.gene89102:CDS
TCCTACTCTTTATCTTCAAT+TGG 0.334852 2.4:+2734892 MS.gene89102:CDS
GAGGAAACCAAAACTATTCT+GGG 0.356834 2.4:+2736558 MS.gene89102:CDS
TTTCCTAAAACCAAAGTGTT+TGG 0.367277 2.4:-2738050 None:intergenic
GTCATGGCAAACTATTGTTA+TGG 0.367788 2.4:+2736349 MS.gene89102:CDS
AAGGACCATTGAAGTATAAC+AGG 0.367890 2.4:-2736849 None:intergenic
ACAAGTGGGCTTGAAACTTT+AGG 0.372523 2.4:+2738611 MS.gene89102:CDS
GATGCAAATTATTCCTGTAT+TGG 0.373222 2.4:+2735470 MS.gene89102:CDS
AGCAACACTGGTCGGTTTCA+TGG 0.373280 2.4:+2735377 MS.gene89102:CDS
GAAAGAATGACTGATGTTAA+AGG 0.373299 2.4:-2736595 None:intergenic
TCAATTGCATCTTTGGTTAT+GGG 0.374321 2.4:+2734833 MS.gene89102:CDS
AAAATTTGCAACAGAGTTTG+AGG 0.376454 2.4:+2736539 MS.gene89102:intron
CAGCAATTGAAAGGGTTACT+TGG 0.381616 2.4:+2735426 MS.gene89102:CDS
ATACTTCAATGGTCCTTACT+TGG 0.385099 2.4:+2736855 MS.gene89102:CDS
ACCAAAGATGCAATTGAAAC+TGG 0.387670 2.4:-2734827 None:intergenic
TCATGGCAAACTATTGTTAT+GGG 0.396502 2.4:+2736350 MS.gene89102:CDS
TTATGGAATATCTGTGTTCC+AGG 0.397023 2.4:-2738077 None:intergenic
GTCGAATTAGCGAAATAGAT+TGG 0.397884 2.4:-2738161 None:intergenic
GGTAAACGAACTTGATGAAT+TGG 0.398007 2.4:-2733793 None:intergenic
TACCCACACAGTCCAATAAT+AGG 0.405757 2.4:-2734659 None:intergenic
AAACGGTGTAAAGGATCATC+AGG 0.414499 2.4:-2733871 None:intergenic
TTGTTGAATGATGTTCTCTC+TGG 0.416692 2.4:-2733817 None:intergenic
AGAAGAAACTTTGTGAAAGA+TGG 0.416725 2.4:-2733904 None:intergenic
TTGGCTCTTGCTATCAAAAC+AGG 0.418557 2.4:+2736874 MS.gene89102:CDS
GGTTTATTCCAAGCATCTCT+TGG 0.419052 2.4:+2734938 MS.gene89102:CDS
TCTTCGGCAGATTGGGCACT+TGG 0.427078 2.4:+2736798 MS.gene89102:intron
TAAAACCAAAGTGTTTGGTC+TGG 0.436365 2.4:-2738045 None:intergenic
GCTAGAAAAGAGATCACTTC+AGG 0.438400 2.4:+2738649 MS.gene89102:CDS
TGCGGTTTCTAATATAATCA+TGG 0.439032 2.4:+2737512 MS.gene89102:CDS
AGAGAGGCATGAGAAACAAA+AGG 0.448526 2.4:-2737554 None:intergenic
GGTCTCTGTTTACAAGCAAA+AGG 0.455202 2.4:+2735491 MS.gene89102:CDS
TTCTGCATACTGTGAGAGAT+AGG 0.461000 2.4:-2736912 None:intergenic
ATGGTTGCCAAGACTACATT+TGG 0.469754 2.4:-2737588 None:intergenic
AAATGGGGAACAAGAATTGA+AGG 0.470307 2.4:-2733930 None:intergenic
CCTGCTGCAGGATACTAAGA+TGG 0.477618 2.4:+2738292 MS.gene89102:intron
TACCTGAGGAATGGCGAGGC+TGG 0.478704 2.4:-2734019 None:intergenic
CAGATTGGGCACTTGGCAAA+AGG 0.480187 2.4:+2736805 MS.gene89102:intron
CTATACACCAAATGTAGTCT+TGG 0.480440 2.4:+2737581 MS.gene89102:CDS
TGCCAGCCTCGCCATTCCTC+AGG 0.487005 2.4:+2734017 MS.gene89102:CDS
TTGATAGCAAGAGCCAAGTA+AGG 0.495546 2.4:-2736868 None:intergenic
GAAACTTTGTGAAAGATGGT+TGG 0.495720 2.4:-2733900 None:intergenic
GTGAACCTGTTATACTTCAA+TGG 0.496085 2.4:+2736844 MS.gene89102:CDS
TTGAATGATGTTCTCTCTGG+TGG 0.500229 2.4:-2733814 None:intergenic
AAATGACATCAGAACGAAGA+AGG 0.501148 2.4:-2733981 None:intergenic
GTGTCACTACAGCAATTGAA+AGG 0.503444 2.4:+2735417 MS.gene89102:CDS
ACTTCATGCTATGTCACAAC+AGG 0.504420 2.4:+2737364 MS.gene89102:CDS
AAGCATCTCTTGGTATACTA+AGG 0.506883 2.4:+2734948 MS.gene89102:CDS
GTTAACAGCCGACCGAGAAA+AGG 0.511994 2.4:-2737469 None:intergenic
ACAGCCAAAATGAGAAATGA+AGG 0.513960 2.4:-2738131 None:intergenic
TTTGCTACTGCAGCTTGTGC+TGG 0.518208 2.4:+2738753 MS.gene89102:intron
ATTGGTATTATGAACATAGC+TGG 0.521101 2.4:+2737334 MS.gene89102:CDS
ACACTGGTCGGTTTCATGGC+CGG 0.523106 2.4:+2735381 MS.gene89102:CDS
CCATTGATATATGCTCTGCT+TGG 0.532486 2.4:+2734779 MS.gene89102:CDS
ATCAAAACAGGCATTGTCAC+AGG 0.532741 2.4:+2736886 MS.gene89102:CDS
TGTCTCCAGACCAAACACTT+TGG 0.535603 2.4:+2738040 MS.gene89102:CDS
AACAAAGAAATGATGGCCAT+TGG 0.536224 2.4:+2737316 MS.gene89102:CDS
TTAGTATACCAAGAGATGCT+TGG 0.538194 2.4:-2734946 None:intergenic
TCTGAGAAGGAAGACTAAGA+TGG 0.538988 2.4:-2736620 None:intergenic
ACTAAGATGGGTTCGAGAAG+AGG 0.542827 2.4:+2738305 MS.gene89102:CDS
GGATGGTAACAAAGAAATGA+TGG 0.543158 2.4:+2737309 MS.gene89102:CDS
TCGGCTGTTAACTACAATGC+TGG 0.543954 2.4:+2737480 MS.gene89102:CDS
CCAAGCAGAGCATATATCAA+TGG 0.545731 2.4:-2734779 None:intergenic
TTGTAAACAGAGACCAATAC+AGG 0.551560 2.4:-2735483 None:intergenic
CTTGTGCTGGTAAATCCTGT+TGG 0.553364 2.4:+2738766 MS.gene89102:CDS
CTGCTGCAGGATACTAAGAT+GGG 0.556954 2.4:+2738293 MS.gene89102:intron
TGTCACTACAGCAATTGAAA+GGG 0.559159 2.4:+2735418 MS.gene89102:CDS
GATGAGCCTTATTTCTGAGA+AGG 0.561522 2.4:-2736633 None:intergenic
AGGAATGGCGAGGCTGGCAA+TGG 0.564563 2.4:-2734013 None:intergenic
TTTCTTTGTTACCATCCACT+TGG 0.567679 2.4:-2737303 None:intergenic
ACCGCAATACTGAGGCCTAA+AGG 0.567708 2.4:-2737732 None:intergenic
GAGCGTATAAAAGAATATAA+CGG 0.567847 2.4:+2738330 MS.gene89102:CDS
ACCTTTAGGCCTCAGTATTG+CGG 0.573360 2.4:+2737731 MS.gene89102:CDS
AATGACATCAGAACGAAGAA+GGG 0.574823 2.4:-2733980 None:intergenic
ATAGAGTCCTTTAAATCCAA+AGG 0.579814 2.4:-2738830 None:intergenic
CTATCAAAAGCAACACTGGT+CGG 0.581691 2.4:+2735369 MS.gene89102:CDS
GAGAGGCATGAGAAACAAAA+GGG 0.582465 2.4:-2737553 None:intergenic
AGTTCAAGACATGTTGGTGT+TGG 0.584677 2.4:+2734803 MS.gene89102:CDS
TTTCAGGAAGGAATTGCAGT+AGG 0.586893 2.4:+2737253 MS.gene89102:intron
CAATGTGTCTTGTTGTGAGT+AGG 0.589297 2.4:-2736391 None:intergenic
AAATCCTGTTGGAAATGTGA+TGG 0.589817 2.4:+2738777 MS.gene89102:CDS
AAGTATAACAGGTTCACTGA+TGG 0.594442 2.4:-2736838 None:intergenic
AATCACAGCAGCAATAATGA+TGG 0.594477 2.4:-2737607 None:intergenic
TTTCCTATCAAAAGCAACAC+TGG 0.594795 2.4:+2735365 MS.gene89102:CDS
TGTTTACAAGCAAAAGGATG+AGG 0.596601 2.4:+2735497 MS.gene89102:CDS
TGACACAATGATAGCAGCAC+CGG 0.605213 2.4:-2735400 None:intergenic
AAAGGACTCTATCTCACAGT+GGG 0.606820 2.4:+2738841 MS.gene89102:CDS
TATAACAGGTTCACTGATGG+CGG 0.607462 2.4:-2736835 None:intergenic
AGCGGCATATAAACTGTGGA+AGG 0.607621 2.4:+2737647 MS.gene89102:CDS
CTTGGAAGTTCAAGACATGT+TGG 0.608273 2.4:+2734797 MS.gene89102:CDS
AGCTATGTTCATAATACCAA+TGG 0.612229 2.4:-2737332 None:intergenic
TTGGAATAAACCAGCAACAA+AGG 0.616151 2.4:-2734927 None:intergenic
GCCAATTGAAGATAAAGAGT+AGG 0.620777 2.4:-2734893 None:intergenic
TTGGTCTGGAGACATGAAGT+AGG 0.623137 2.4:-2738031 None:intergenic
CCTTCTCTAACCTCTCTCGA+AGG 0.623428 2.4:-2738187 None:intergenic
ATTCGACTTACCTTCGAGAG+AGG 0.627046 2.4:+2738177 MS.gene89102:CDS
CCACACAGTCCAATAATAGG+AGG 0.627903 2.4:-2734656 None:intergenic
TGAGGCCTAAAGGTACAGAA+AGG 0.628258 2.4:-2737722 None:intergenic
AATGGGGAACAAGAATTGAA+GGG 0.630184 2.4:-2733929 None:intergenic
TTCAGCTTACCGCAATACTG+AGG 0.632493 2.4:-2737740 None:intergenic
GTCACAGCAATAGACACAAG+TGG 0.637346 2.4:+2738596 MS.gene89102:CDS
AGCAGAGCATATATCAATGG+TGG 0.637500 2.4:-2734776 None:intergenic
TCACAGCAATAGACACAAGT+GGG 0.640720 2.4:+2738597 MS.gene89102:CDS
ATCAAGCGGCATATAAACTG+TGG 0.658235 2.4:+2737643 MS.gene89102:CDS
TTTGGTGTATAGTAGAAGAG+AGG 0.666763 2.4:-2737570 None:intergenic
GAATAAACCAGCAACAAAGG+TGG 0.668265 2.4:-2734924 None:intergenic
TTTATACCTGAGGAATGGCG+AGG 0.677577 2.4:-2734023 None:intergenic
TGGACTAATAGATTATCAAG+CGG 0.690120 2.4:+2737629 MS.gene89102:CDS
AACGGTGTAAAGGATCATCA+GGG 0.693572 2.4:-2733870 None:intergenic
CAATGCTGGAGCACAGACTG+CGG 0.704420 2.4:+2737494 MS.gene89102:CDS
TAAAGGACTCTATCTCACAG+TGG 0.722085 2.4:+2738840 MS.gene89102:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATAAAATAAATTAT+GGG + chr2.4:2735653-2735672 MS.gene89102:intron 0.0%
!! TTTATTAATAAAATAAATTA+TGG + chr2.4:2735652-2735671 MS.gene89102:intron 0.0%
!! AAGTTTAAATTTAAATGATT+TGG + chr2.4:2737073-2737092 MS.gene89102:intron 10.0%
!! ATTATTAATATCAATTTACT+TGG + chr2.4:2737972-2737991 MS.gene89102:intron 10.0%
!! ATGAGACAATAAATAATTTA+TGG - chr2.4:2735859-2735878 None:intergenic 15.0%
!! GAAATTTGAGAATTTATTTA+TGG + chr2.4:2735247-2735266 MS.gene89102:intron 15.0%
!! GATTGAATGATTATATAAAA+AGG + chr2.4:2737880-2737899 MS.gene89102:intron 15.0%
!! TATTTATGGTTATTTATTGA+AGG + chr2.4:2735261-2735280 MS.gene89102:intron 15.0%
!! TGAGACAATAAATAATTTAT+GGG - chr2.4:2735858-2735877 None:intergenic 15.0%
!!! ATGCAATATATTTTAAGTTT+AGG - chr2.4:2737928-2737947 None:intergenic 15.0%
!!! GTAATTGTTATTAATTATGA+TGG + chr2.4:2734719-2734738 MS.gene89102:intron 15.0%
!!! TGCAATATATTTTAAGTTTA+GGG - chr2.4:2737927-2737946 None:intergenic 15.0%
!! AAAAATTAGCATAGTAAGAT+TGG + chr2.4:2735045-2735064 MS.gene89102:intron 20.0%
!! AAATAATACTACATGAGATA+CGG - chr2.4:2738480-2738499 None:intergenic 20.0%
!! AATTCAGTCCAAAAAAAAAA+AGG - chr2.4:2734585-2734604 None:intergenic 20.0%
!! ACAAGTTAATGATTCAAATA+GGG - chr2.4:2735810-2735829 None:intergenic 20.0%
!! ATAAATATAGGACAAAACTT+AGG + chr2.4:2736980-2736999 MS.gene89102:intron 20.0%
!! ATGAGAAATGAAGAATATTA+TGG - chr2.4:2735944-2735963 None:intergenic 20.0%
!! CATGTTACATACATAAATAT+AGG + chr2.4:2736968-2736987 MS.gene89102:intron 20.0%
!! TCTCATAAATTCAATTCAAA+TGG + chr2.4:2735873-2735892 MS.gene89102:intron 20.0%
!!! AATGTTATTTGACTTTGATT+TGG + chr2.4:2736481-2736500 MS.gene89102:intron 20.0%
!!! ATTGATATATTGATTTCAGA+AGG + chr2.4:2738683-2738702 MS.gene89102:intron 20.0%
!!! CTAGATTTTGTACTTAAATA+TGG + chr2.4:2737173-2737192 MS.gene89102:intron 20.0%
!!! TATAAAATGTTTTACACTGT+TGG - chr2.4:2737817-2737836 None:intergenic 20.0%
!!! TGAATAATGGTAGATTTTTT+AGG - chr2.4:2738709-2738728 None:intergenic 20.0%
! AACATCTGTGTCAAAAAAAA+AGG - chr2.4:2738454-2738473 None:intergenic 25.0%
! AGAAGTTAGAAAGTGAATAA+TGG - chr2.4:2738722-2738741 None:intergenic 25.0%
! AGCATCACAATATTTAAAAG+TGG - chr2.4:2736269-2736288 None:intergenic 25.0%
! AGTCAGTAAACTAATACATT+TGG - chr2.4:2737786-2737805 None:intergenic 25.0%
! ATATTCCTATGAAAAGATTG+TGG - chr2.4:2736148-2736167 None:intergenic 25.0%
! CACAAGTTAATGATTCAAAT+AGG - chr2.4:2735811-2735830 None:intergenic 25.0%
! GAGCGTATAAAAGAATATAA+CGG + chr2.4:2738330-2738349 MS.gene89102:CDS 25.0%
! GTAAAAAAGTCACATAAGTA+CGG + chr2.4:2735067-2735086 MS.gene89102:intron 25.0%
! TGATATGTGATTAATGTATG+TGG + chr2.4:2738530-2738549 MS.gene89102:intron 25.0%
! TTCATCATTCACAAAACATA+GGG - chr2.4:2735301-2735320 None:intergenic 25.0%
! TTCATTAGACTTACAACATT+TGG + chr2.4:2738396-2738415 MS.gene89102:intron 25.0%
! TTGGTCAAATTAATCAAAAG+TGG + chr2.4:2736751-2736770 MS.gene89102:intron 25.0%
! TTTCATCATTCACAAAACAT+AGG - chr2.4:2735302-2735321 None:intergenic 25.0%
!! CACTTTTGCCTTTTTTTTTT+TGG + chr2.4:2734574-2734593 MS.gene89102:intron 25.0%
!! GTTACATATGTCGAAAATTT+TGG + chr2.4:2738804-2738823 MS.gene89102:CDS 25.0%
!! TATATTGCATGATAATGCTA+TGG + chr2.4:2737938-2737957 MS.gene89102:intron 25.0%
!! TTTCATGAAGAGAGTATAAT+GGG + chr2.4:2736243-2736262 MS.gene89102:intron 25.0%
!!! ATTTCTAGTTTCATGATTTC+TGG + chr2.4:2734690-2734709 MS.gene89102:intron 25.0%
!!! CTTTGTATTGGTTTATGTTA+TGG - chr2.4:2738097-2738116 None:intergenic 25.0%
!!! TTCTAAAATTAAAGCGTGTT+CGG + chr2.4:2734376-2734395 MS.gene89102:intron 25.0%
!!! TTTTACAACTATTTTTGCAG+TGG + chr2.4:2736327-2736346 MS.gene89102:intron 25.0%
AAAATTTGCAACAGAGTTTG+AGG + chr2.4:2736539-2736558 MS.gene89102:intron 30.0%
ACAAAATTTGCCTATGTTTC+AGG + chr2.4:2737237-2737256 MS.gene89102:intron 30.0%
AGAAGAAACTTTGTGAAAGA+TGG - chr2.4:2733907-2733926 None:intergenic 30.0%
AGCACTTAAAAATTACCAAG+TGG + chr2.4:2737288-2737307 MS.gene89102:CDS 30.0%
AGCTATGTTCATAATACCAA+TGG - chr2.4:2737335-2737354 None:intergenic 30.0%
ATAGAGTCCTTTAAATCCAA+AGG - chr2.4:2738833-2738852 None:intergenic 30.0%
ATGCTACAATAAAACCTGAT+TGG - chr2.4:2737847-2737866 None:intergenic 30.0%
ATTGGTATTATGAACATAGC+TGG + chr2.4:2737334-2737353 MS.gene89102:CDS 30.0%
CAAACTATTGTTATGGGATT+TGG + chr2.4:2736356-2736375 MS.gene89102:CDS 30.0%
CTCTTAAAGCTTCTTTGTAT+TGG - chr2.4:2738109-2738128 None:intergenic 30.0%
CTTAAAAATTACCAAGTGGA+TGG + chr2.4:2737292-2737311 MS.gene89102:CDS 30.0%
GAAAGAATGACTGATGTTAA+AGG - chr2.4:2736598-2736617 None:intergenic 30.0%
GATGCAAATTATTCCTGTAT+TGG + chr2.4:2735470-2735489 MS.gene89102:CDS 30.0%
GCTCTTAATCATATGAATCA+TGG - chr2.4:2738268-2738287 None:intergenic 30.0%
TCAATTGCATCTTTGGTTAT+GGG + chr2.4:2734833-2734852 MS.gene89102:CDS 30.0%
TCATGGCAAACTATTGTTAT+GGG + chr2.4:2736350-2736369 MS.gene89102:CDS 30.0%
TCCTACTCTTTATCTTCAAT+TGG + chr2.4:2734892-2734911 MS.gene89102:CDS 30.0%
TCTTAGATAACTAAGTCATG+TGG - chr2.4:2737412-2737431 None:intergenic 30.0%
TGCGGTTTCTAATATAATCA+TGG + chr2.4:2737512-2737531 MS.gene89102:CDS 30.0%
TGGACTAATAGATTATCAAG+CGG + chr2.4:2737629-2737648 MS.gene89102:CDS 30.0%
TTCAATTGCATCTTTGGTTA+TGG + chr2.4:2734832-2734851 MS.gene89102:CDS 30.0%
TTGGATACCTTTGGATTTAA+AGG + chr2.4:2738823-2738842 MS.gene89102:CDS 30.0%
TTGTCTCTTGATATATTGCA+GGG + chr2.4:2734605-2734624 MS.gene89102:intron 30.0%
TTTGTCTCTTGATATATTGC+AGG + chr2.4:2734604-2734623 MS.gene89102:intron 30.0%
! AGTTCCTTCATTTCTCATTT+TGG + chr2.4:2738127-2738146 MS.gene89102:CDS 30.0%
! ATATAGCAACCTGAAGATTT+TGG - chr2.4:2737998-2738017 None:intergenic 30.0%
! CTTTAAGAATGCTTGGAAAT+TGG + chr2.4:2735547-2735566 MS.gene89102:intron 30.0%
! CTTTCATGAAGAGAGTATAA+TGG + chr2.4:2736242-2736261 MS.gene89102:intron 30.0%
! GATTGATTCTGTGTATTCTT+CGG + chr2.4:2736782-2736801 MS.gene89102:intron 30.0%
! GCATGAACATTTGATAACTT+AGG + chr2.4:2735111-2735130 MS.gene89102:intron 30.0%
! TCGAAAATTTTGGATACCTT+TGG + chr2.4:2738814-2738833 MS.gene89102:CDS 30.0%
! TCTTAAAGTGCTAAACTACA+TGG - chr2.4:2735535-2735554 None:intergenic 30.0%
! TCTTTTGAATTTGTGTATGC+AGG + chr2.4:2735325-2735344 MS.gene89102:intron 30.0%
! TGCATAATTTTAGACATGAC+AGG + chr2.4:2738366-2738385 MS.gene89102:CDS 30.0%
! TTTAGCACTTTAAGAATGCT+TGG + chr2.4:2735540-2735559 MS.gene89102:intron 30.0%
! TTTCCTAAAACCAAAGTGTT+TGG - chr2.4:2738053-2738072 None:intergenic 30.0%
! TTTTATACAGTCATCCAATC+AGG + chr2.4:2737830-2737849 MS.gene89102:intron 30.0%
!! AATCATTAACTTGTGCCTTT+AGG + chr2.4:2735816-2735835 MS.gene89102:intron 30.0%
!! ATCATTAACTTGTGCCTTTA+GGG + chr2.4:2735817-2735836 MS.gene89102:intron 30.0%
!! CAGAAAAGTGTAACAAGTTT+TGG - chr2.4:2736938-2736957 None:intergenic 30.0%
!!! AAGATGGTTGGTTTTTGAAA+CGG - chr2.4:2733891-2733910 None:intergenic 30.0%
AAACACGACACTAACATCAA+TGG - chr2.4:2734217-2734236 None:intergenic 35.0%
AAATCCTGTTGGAAATGTGA+TGG + chr2.4:2738777-2738796 MS.gene89102:CDS 35.0%
AAATGACATCAGAACGAAGA+AGG - chr2.4:2733984-2734003 None:intergenic 35.0%
AAATGGGGAACAAGAATTGA+AGG - chr2.4:2733933-2733952 None:intergenic 35.0%
AACAAAGAAATGATGGCCAT+TGG + chr2.4:2737316-2737335 MS.gene89102:CDS 35.0%
AAGCATCTCTTGGTATACTA+AGG + chr2.4:2734948-2734967 MS.gene89102:CDS 35.0%
AAGGAACAGAACACCAAAAA+AGG - chr2.4:2737706-2737725 None:intergenic 35.0%
AAGGACCATTGAAGTATAAC+AGG - chr2.4:2736852-2736871 None:intergenic 35.0%
AAGTATAACAGGTTCACTGA+TGG - chr2.4:2736841-2736860 None:intergenic 35.0%
AATCACAGCAGCAATAATGA+TGG - chr2.4:2737610-2737629 None:intergenic 35.0%
AATGACATCAGAACGAAGAA+GGG - chr2.4:2733983-2734002 None:intergenic 35.0%
AATGGGGAACAAGAATTGAA+GGG - chr2.4:2733932-2733951 None:intergenic 35.0%
AATTTGCCTATGTTTCAGGA+AGG + chr2.4:2737241-2737260 MS.gene89102:intron 35.0%
ACAGAACAAGTAGTACCTAT+AGG - chr2.4:2737012-2737031 None:intergenic 35.0%
ACAGCCAAAATGAGAAATGA+AGG - chr2.4:2738134-2738153 None:intergenic 35.0%
ACCAAAGATGCAATTGAAAC+TGG - chr2.4:2734830-2734849 None:intergenic 35.0%
ACCAGTTTCAATTGCATCTT+TGG + chr2.4:2734826-2734845 MS.gene89102:CDS 35.0%
ACCGCGTGATAAATTATAAC+CGG - chr2.4:2737038-2737057 None:intergenic 35.0%
ACCGGTTATAATTTATCACG+CGG + chr2.4:2737034-2737053 MS.gene89102:intron 35.0%
AGTCTTCCTTCTCAGAAATA+AGG + chr2.4:2736627-2736646 MS.gene89102:CDS 35.0%
AGTGAAATCACAAACACATG+CGG - chr2.4:2735142-2735161 None:intergenic 35.0%
ATACTTCAATGGTCCTTACT+TGG + chr2.4:2736855-2736874 MS.gene89102:CDS 35.0%
ATCATTATTGCTGCTGTGAT+TGG + chr2.4:2737609-2737628 MS.gene89102:CDS 35.0%
ATCCTTCACTTAGCAATCAT+GGG - chr2.4:2736198-2736217 None:intergenic 35.0%
ATTGATGTTAGTGTCGTGTT+TGG + chr2.4:2734216-2734235 MS.gene89102:intron 35.0%
ATTTCTTAACATGTGCCCTA+AGG - chr2.4:2735695-2735714 None:intergenic 35.0%
CTATACACCAAATGTAGTCT+TGG + chr2.4:2737581-2737600 MS.gene89102:CDS 35.0%
GAAACTTTGTGAAAGATGGT+TGG - chr2.4:2733903-2733922 None:intergenic 35.0%
GAGGAAACCAAAACTATTCT+GGG + chr2.4:2736558-2736577 MS.gene89102:CDS 35.0%
GCCAATTGAAGATAAAGAGT+AGG - chr2.4:2734896-2734915 None:intergenic 35.0%
GGATGGTAACAAAGAAATGA+TGG + chr2.4:2737309-2737328 MS.gene89102:CDS 35.0%
GGTAAACGAACTTGATGAAT+TGG - chr2.4:2733796-2733815 None:intergenic 35.0%
GGTTGACAAACTTGATTTCT+TGG + chr2.4:2737668-2737687 MS.gene89102:CDS 35.0%
GTCATGGCAAACTATTGTTA+TGG + chr2.4:2736349-2736368 MS.gene89102:CDS 35.0%
GTCGAATTAGCGAAATAGAT+TGG - chr2.4:2738164-2738183 None:intergenic 35.0%
GTGAACCTGTTATACTTCAA+TGG + chr2.4:2736844-2736863 MS.gene89102:CDS 35.0%
TCATTTCTCATTGTTGTGTG+TGG + chr2.4:2735953-2735972 MS.gene89102:intron 35.0%
TCCTATGAAAAGATTGTGGT+GGG - chr2.4:2736144-2736163 None:intergenic 35.0%
TGAATTTGTGTATGCAGGTT+AGG + chr2.4:2735330-2735349 MS.gene89102:intron 35.0%
TGAGAACCCCATTGAAAAAT+GGG - chr2.4:2733949-2733968 None:intergenic 35.0%
TGAGGAAACCAAAACTATTC+TGG + chr2.4:2736557-2736576 MS.gene89102:CDS 35.0%
TGTCACTACAGCAATTGAAA+GGG + chr2.4:2735418-2735437 MS.gene89102:CDS 35.0%
TGTTTACAAGCAAAAGGATG+AGG + chr2.4:2735497-2735516 MS.gene89102:CDS 35.0%
TTAGTATACCAAGAGATGCT+TGG - chr2.4:2734949-2734968 None:intergenic 35.0%
TTATGGAATATCTGTGTTCC+AGG - chr2.4:2738080-2738099 None:intergenic 35.0%
TTCCTATGAAAAGATTGTGG+TGG - chr2.4:2736145-2736164 None:intergenic 35.0%
TTGGAATAAACCAGCAACAA+AGG - chr2.4:2734930-2734949 None:intergenic 35.0%
TTGTAAACAGAGACCAATAC+AGG - chr2.4:2735486-2735505 None:intergenic 35.0%
TTGTTGAATGATGTTCTCTC+TGG - chr2.4:2733820-2733839 None:intergenic 35.0%
TTTACTTGGCCAAAATCTTC+AGG + chr2.4:2737986-2738005 MS.gene89102:intron 35.0%
TTTCCTATCAAAAGCAACAC+TGG + chr2.4:2735365-2735384 MS.gene89102:CDS 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr2.4:2735694-2735713 None:intergenic 35.0%
TTTCTTTGTTACCATCCACT+TGG - chr2.4:2737306-2737325 None:intergenic 35.0%
! AAACTTAGGTGTTGTCCTAT+AGG + chr2.4:2736994-2737013 MS.gene89102:intron 35.0%
! GTTAGTGTGTTTTATACCTG+AGG - chr2.4:2734036-2734055 None:intergenic 35.0%
! TAAAACCAAAGTGTTTGGTC+TGG - chr2.4:2738048-2738067 None:intergenic 35.0%
! TGTGTTTTATACCTGAGGAA+TGG - chr2.4:2734031-2734050 None:intergenic 35.0%
! TTTGGTGTATAGTAGAAGAG+AGG - chr2.4:2737573-2737592 None:intergenic 35.0%
! TTTTCCATCACATTTCCAAC+AGG - chr2.4:2738784-2738803 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTAA+AGG - chr2.4:2735834-2735853 None:intergenic 35.0%
!! CTTGTTCCCCATTTTTCAAT+GGG + chr2.4:2733939-2733958 MS.gene89102:CDS 35.0%
!! TCTTGTTCCCCATTTTTCAA+TGG + chr2.4:2733938-2733957 MS.gene89102:CDS 35.0%
!! TTGTTCCCCATTTTTCAATG+GGG + chr2.4:2733940-2733959 MS.gene89102:CDS 35.0%
!!! AACTATTTTTGCAGTGGTCA+TGG + chr2.4:2736333-2736352 MS.gene89102:intron 35.0%
!!! AGACCAAACACTTTGGTTTT+AGG + chr2.4:2738047-2738066 MS.gene89102:CDS 35.0%
!!! TGGTTTTTGAAACGGTGTAA+AGG - chr2.4:2733883-2733902 None:intergenic 35.0%
!!! TGTTATGGGATTTGGCTTTT+TGG + chr2.4:2736364-2736383 MS.gene89102:CDS 35.0%
!!! TTGGTTTTAGGAAACATACC+TGG + chr2.4:2738059-2738078 MS.gene89102:CDS 35.0%
AAACGGTGTAAAGGATCATC+AGG - chr2.4:2733874-2733893 None:intergenic 40.0%
AAAGGACTCTATCTCACAGT+GGG + chr2.4:2738841-2738860 MS.gene89102:CDS 40.0%
AACGGTGTAAAGGATCATCA+GGG - chr2.4:2733873-2733892 None:intergenic 40.0%
ACACTATGCAAGACTAACAC+CGG - chr2.4:2734244-2734263 None:intergenic 40.0%
ACTTCATGCTATGTCACAAC+AGG + chr2.4:2737364-2737383 MS.gene89102:CDS 40.0%
AGCAGAGCATATATCAATGG+TGG - chr2.4:2734779-2734798 None:intergenic 40.0%
AGTTCAAGACATGTTGGTGT+TGG + chr2.4:2734803-2734822 MS.gene89102:CDS 40.0%
ATCAAGCGGCATATAAACTG+TGG + chr2.4:2737643-2737662 MS.gene89102:CDS 40.0%
ATGGTTGCCAAGACTACATT+TGG - chr2.4:2737591-2737610 None:intergenic 40.0%
CAGCAATTGAAAGGGTTACT+TGG + chr2.4:2735426-2735445 MS.gene89102:CDS 40.0%
CATAAGTACGGTCTGACATA+TGG + chr2.4:2735079-2735098 MS.gene89102:intron 40.0%
CATCCTTCACTTAGCAATCA+TGG - chr2.4:2736199-2736218 None:intergenic 40.0%
CATGATTGCTAAGTGAAGGA+TGG + chr2.4:2736197-2736216 MS.gene89102:intron 40.0%
CCAAGCAGAGCATATATCAA+TGG - chr2.4:2734782-2734801 None:intergenic 40.0%
CCATTGATATATGCTCTGCT+TGG + chr2.4:2734779-2734798 MS.gene89102:CDS 40.0%
CTATCAAAAGCAACACTGGT+CGG + chr2.4:2735369-2735388 MS.gene89102:CDS 40.0%
CTCCTATTATTGGACTGTGT+GGG + chr2.4:2734657-2734676 MS.gene89102:intron 40.0%
CTGAGAACCCCATTGAAAAA+TGG - chr2.4:2733950-2733969 None:intergenic 40.0%
CTGTTCCTTTCTGTACCTTT+AGG + chr2.4:2737717-2737736 MS.gene89102:CDS 40.0%
CTTCATATTGAAGACGTGTC+TGG + chr2.4:2734075-2734094 MS.gene89102:intron 40.0%
CTTGGAAGTTCAAGACATGT+TGG + chr2.4:2734797-2734816 MS.gene89102:CDS 40.0%
GAATAAACCAGCAACAAAGG+TGG - chr2.4:2734927-2734946 None:intergenic 40.0%
GAATATAGTCGCGCATTTCT+CGG - chr2.4:2734344-2734363 None:intergenic 40.0%
GAGAAAGTCTACATTCTTGC+AGG + chr2.4:2737444-2737463 MS.gene89102:intron 40.0%
GAGAACCCCATTGAAAAATG+GGG - chr2.4:2733948-2733967 None:intergenic 40.0%
GCAAACTTGCCTCCTATTAT+TGG + chr2.4:2734647-2734666 MS.gene89102:CDS 40.0%
GCAATTCCTTCCTGAAACAT+AGG - chr2.4:2737250-2737269 None:intergenic 40.0%
GCTAGAAAAGAGATCACTTC+AGG + chr2.4:2738649-2738668 MS.gene89102:CDS 40.0%
GGTCTCTGTTTACAAGCAAA+AGG + chr2.4:2735491-2735510 MS.gene89102:CDS 40.0%
GGTTTATTCCAAGCATCTCT+TGG + chr2.4:2734938-2734957 MS.gene89102:CDS 40.0%
GTACTACTTGTTCTGTTCAC+CGG + chr2.4:2737016-2737035 MS.gene89102:intron 40.0%
TAAAGGACTCTATCTCACAG+TGG + chr2.4:2738840-2738859 MS.gene89102:CDS 40.0%
TACCCACACAGTCCAATAAT+AGG - chr2.4:2734662-2734681 None:intergenic 40.0%
TATAACAGGTTCACTGATGG+CGG - chr2.4:2736838-2736857 None:intergenic 40.0%
TATGGATTCGAATTGCGTTC+AGG - chr2.4:2735926-2735945 None:intergenic 40.0%
TCACAGCAATAGACACAAGT+GGG + chr2.4:2738597-2738616 MS.gene89102:CDS 40.0%
TCCTTCACTTAGCAATCATG+GGG - chr2.4:2736197-2736216 None:intergenic 40.0%
TCTGAGAAGGAAGACTAAGA+TGG - chr2.4:2736623-2736642 None:intergenic 40.0%
TGTGTATTCTTCGGCAGATT+GGG + chr2.4:2736791-2736810 MS.gene89102:intron 40.0%
TTCTGCATACTGTGAGAGAT+AGG - chr2.4:2736915-2736934 None:intergenic 40.0%
TTGAATGATGTTCTCTCTGG+TGG - chr2.4:2733817-2733836 None:intergenic 40.0%
TTTCAGGAAGGAATTGCAGT+AGG + chr2.4:2737253-2737272 MS.gene89102:intron 40.0%
! ACAAGTGGGCTTGAAACTTT+AGG + chr2.4:2738611-2738630 MS.gene89102:CDS 40.0%
! AGAGAGGCATGAGAAACAAA+AGG - chr2.4:2737557-2737576 None:intergenic 40.0%
! AGTGTAACCACGTGTTTTGT+CGG - chr2.4:2734170-2734189 None:intergenic 40.0%
! ATCAAAACAGGCATTGTCAC+AGG + chr2.4:2736886-2736905 MS.gene89102:CDS 40.0%
! CAATGTGTCTTGTTGTGAGT+AGG - chr2.4:2736394-2736413 None:intergenic 40.0%
! CATGATAATGCTATGGCATG+TGG + chr2.4:2737945-2737964 MS.gene89102:intron 40.0%
! CTTCGTTCTGATGTCATTTC+TGG + chr2.4:2733985-2734004 MS.gene89102:CDS 40.0%
! GAGAGGCATGAGAAACAAAA+GGG - chr2.4:2737556-2737575 None:intergenic 40.0%
! GTGTCACTACAGCAATTGAA+AGG + chr2.4:2735417-2735436 MS.gene89102:CDS 40.0%
! TCCCACCACAATCTTTTCAT+AGG + chr2.4:2736140-2736159 MS.gene89102:intron 40.0%
! TTCTTGCAGGATCCTTTTCT+CGG + chr2.4:2737457-2737476 MS.gene89102:intron 40.0%
! TTGATAGCAAGAGCCAAGTA+AGG - chr2.4:2736871-2736890 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+AGG + chr2.4:2736874-2736893 MS.gene89102:CDS 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG + chr2.4:2735677-2735696 MS.gene89102:intron 40.0%
!! GATGAGCCTTATTTCTGAGA+AGG - chr2.4:2736636-2736655 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG + chr2.4:2735676-2735695 MS.gene89102:intron 40.0%
ACCCCATGATTGCTAAGTGA+AGG + chr2.4:2736193-2736212 MS.gene89102:intron 45.0%
ACCTTTAGGCCTCAGTATTG+CGG + chr2.4:2737731-2737750 MS.gene89102:CDS 45.0%
AGCGGCATATAAACTGTGGA+AGG + chr2.4:2737647-2737666 MS.gene89102:CDS 45.0%
AGTCGTATGTCTCAAGTGTC+AGG - chr2.4:2734103-2734122 None:intergenic 45.0%
ATTCGACTTACCTTCGAGAG+AGG + chr2.4:2738177-2738196 MS.gene89102:CDS 45.0%
CATGTCTCACTGATAGACAC+CGG - chr2.4:2734405-2734424 None:intergenic 45.0%
CCACACAGTCCAATAATAGG+AGG - chr2.4:2734659-2734678 None:intergenic 45.0%
CCTCCTATTATTGGACTGTG+TGG + chr2.4:2734656-2734675 MS.gene89102:intron 45.0%
CTAATGTCCGACAAAACACG+TGG + chr2.4:2734160-2734179 MS.gene89102:intron 45.0%
CTGCTGCAGGATACTAAGAT+GGG + chr2.4:2738293-2738312 MS.gene89102:intron 45.0%
CTGTGTATTCTTCGGCAGAT+TGG + chr2.4:2736790-2736809 MS.gene89102:intron 45.0%
GTCACAGCAATAGACACAAG+TGG + chr2.4:2738596-2738615 MS.gene89102:CDS 45.0%
TCGGCTGTTAACTACAATGC+TGG + chr2.4:2737480-2737499 MS.gene89102:CDS 45.0%
TGACACAATGATAGCAGCAC+CGG - chr2.4:2735403-2735422 None:intergenic 45.0%
TGTCTCCAGACCAAACACTT+TGG + chr2.4:2738040-2738059 MS.gene89102:CDS 45.0%
TTAGCAATCATGGGGTGCAA+GGG - chr2.4:2736189-2736208 None:intergenic 45.0%
TTATTACCGTCGTGTCTGTC+AGG + chr2.4:2734456-2734475 MS.gene89102:intron 45.0%
TTCAGCTTACCGCAATACTG+AGG - chr2.4:2737743-2737762 None:intergenic 45.0%
TTGGTCTGGAGACATGAAGT+AGG - chr2.4:2738034-2738053 None:intergenic 45.0%
TTTATACCTGAGGAATGGCG+AGG - chr2.4:2734026-2734045 None:intergenic 45.0%
! ACCAAAAAAGGAGCACATGC+AGG - chr2.4:2737694-2737713 None:intergenic 45.0%
! ACTAAGATGGGTTCGAGAAG+AGG + chr2.4:2738305-2738324 MS.gene89102:CDS 45.0%
! CTTGTGCTGGTAAATCCTGT+TGG + chr2.4:2738766-2738785 MS.gene89102:CDS 45.0%
! GCTGAAGCCCAGAATAGTTT+TGG - chr2.4:2736568-2736587 None:intergenic 45.0%
! TGAGGCCTAAAGGTACAGAA+AGG - chr2.4:2737725-2737744 None:intergenic 45.0%
!! ATTAAAGCGTGTTCGGTGTC+CGG + chr2.4:2734383-2734402 MS.gene89102:intron 45.0%
!!! CGACCAGTGTTGCTTTTGAT+AGG - chr2.4:2735371-2735390 None:intergenic 45.0%
!! TATAAAAAAAATTGAAATAT+TGG + chr2.4:2736732-2736751 MS.gene89102:intron 5.0%
ACCGCAATACTGAGGCCTAA+AGG - chr2.4:2737735-2737754 None:intergenic 50.0%
CAAACACCTGACAGACACGA+CGG - chr2.4:2734465-2734484 None:intergenic 50.0%
CAGATTGGGCACTTGGCAAA+AGG + chr2.4:2736805-2736824 MS.gene89102:intron 50.0%
CCATCTTAGTATCCTGCAGC+AGG - chr2.4:2738295-2738314 None:intergenic 50.0%
CCTGCTGCAGGATACTAAGA+TGG + chr2.4:2738292-2738311 MS.gene89102:intron 50.0%
CCTTCGAGAGAGGTTAGAGA+AGG + chr2.4:2738187-2738206 MS.gene89102:intron 50.0%
CCTTCTCTAACCTCTCTCGA+AGG - chr2.4:2738190-2738209 None:intergenic 50.0%
CTTAGCAATCATGGGGTGCA+AGG - chr2.4:2736190-2736209 None:intergenic 50.0%
GTTAACAGCCGACCGAGAAA+AGG - chr2.4:2737472-2737491 None:intergenic 50.0%
TTAAGAGCTTCTCCTGCTGC+AGG + chr2.4:2738280-2738299 MS.gene89102:intron 50.0%
TTCACTGCCACCTTTGTTGC+TGG + chr2.4:2734917-2734936 MS.gene89102:CDS 50.0%
TTTGCTACTGCAGCTTGTGC+TGG + chr2.4:2738753-2738772 MS.gene89102:intron 50.0%
! AGCAACACTGGTCGGTTTCA+TGG + chr2.4:2735377-2735396 MS.gene89102:CDS 50.0%
! TGCAGGATCCTTTTCTCGGT+CGG + chr2.4:2737461-2737480 MS.gene89102:intron 50.0%
!! GTTAGTGTCGTGTTTGGTGC+CGG + chr2.4:2734222-2734241 MS.gene89102:intron 50.0%
!!! GCCTGCATGTGCTCCTTTTT+TGG + chr2.4:2737690-2737709 MS.gene89102:CDS 50.0%
CAATGCTGGAGCACAGACTG+CGG + chr2.4:2737494-2737513 MS.gene89102:CDS 55.0%
TCTTCGGCAGATTGGGCACT+TGG + chr2.4:2736798-2736817 MS.gene89102:intron 55.0%
! ACACTGGTCGGTTTCATGGC+CGG + chr2.4:2735381-2735400 MS.gene89102:CDS 55.0%
AGGAATGGCGAGGCTGGCAA+TGG - chr2.4:2734016-2734035 None:intergenic 60.0%
TACCTGAGGAATGGCGAGGC+TGG - chr2.4:2734022-2734041 None:intergenic 60.0%
TGCCAGCCTCGCCATTCCTC+AGG + chr2.4:2734017-2734036 MS.gene89102:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 2733727 2738909 2733727 ID=MS.gene89102
chr2.4 mRNA 2733727 2738909 2733727 ID=MS.gene89102.t1;Parent=MS.gene89102
chr2.4 exon 2733727 2734038 2733727 ID=MS.gene89102.t1.exon1;Parent=MS.gene89102.t1
chr2.4 CDS 2733727 2734038 2733727 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2734626 2734674 2734626 ID=MS.gene89102.t1.exon2;Parent=MS.gene89102.t1
chr2.4 CDS 2734626 2734674 2734626 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2734762 2734969 2734762 ID=MS.gene89102.t1.exon3;Parent=MS.gene89102.t1
chr2.4 CDS 2734762 2734969 2734762 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2735347 2735518 2735347 ID=MS.gene89102.t1.exon4;Parent=MS.gene89102.t1
chr2.4 CDS 2735347 2735518 2735347 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2736347 2736412 2736347 ID=MS.gene89102.t1.exon5;Parent=MS.gene89102.t1
chr2.4 CDS 2736347 2736412 2736347 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2736553 2736666 2736553 ID=MS.gene89102.t1.exon6;Parent=MS.gene89102.t1
chr2.4 CDS 2736553 2736666 2736553 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2736808 2736924 2736808 ID=MS.gene89102.t1.exon7;Parent=MS.gene89102.t1
chr2.4 CDS 2736808 2736924 2736808 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2737259 2737385 2737259 ID=MS.gene89102.t1.exon8;Parent=MS.gene89102.t1
chr2.4 CDS 2737259 2737385 2737259 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2737466 2737752 2737466 ID=MS.gene89102.t1.exon9;Parent=MS.gene89102.t1
chr2.4 CDS 2737466 2737752 2737466 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2738008 2738198 2738008 ID=MS.gene89102.t1.exon10;Parent=MS.gene89102.t1
chr2.4 CDS 2738008 2738198 2738008 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2738302 2738387 2738302 ID=MS.gene89102.t1.exon11;Parent=MS.gene89102.t1
chr2.4 CDS 2738302 2738387 2738302 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2738594 2738670 2738594 ID=MS.gene89102.t1.exon12;Parent=MS.gene89102.t1
chr2.4 CDS 2738594 2738670 2738594 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
chr2.4 exon 2738766 2738909 2738766 ID=MS.gene89102.t1.exon13;Parent=MS.gene89102.t1
chr2.4 CDS 2738766 2738909 2738766 ID=cds.MS.gene89102.t1;Parent=MS.gene89102.t1
Gene Sequence

>MS.gene89102

ATGGGTATGAACTGCAACAGAGTAGAACACTTTGAAGAAACAACAATGAAAATTCAAACAGAAATTCCAATTCATCAAGTTCGTTTACCACCAGAGAGAACATCATTCAACAAACTCAAACACAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCATCTTTCACAAAGTTTCTTCTTACCCTTCAATTCTTGTTCCCCATTTTTCAATGGGGTTCTCAGTATACTCTCACCCTTCTTCGTTCTGATGTCATTTCTGGTCTTACCATTGCCAGCCTCGCCATTCCTCAGGTATAAAACACACTAACTTCTTACATGTCTCTCATACTTCATATTGAAGACGTGTCTGGTGCCTGACACTTGAGACATACGACTATATTCAATTATTTCATTTTGTGAAATTAAGACGTATCTAATGTCCGACAAAACACGTGGTTACACTCAATTATTTTAATTTATGAAATTACCATTGATGTTAGTGTCGTGTTTGGTGCCGGTGTTAGTCTTGCATAGTGTCGCACTTATTTTTTCATGTCATTATACACATGTTTGTATTTCATCATAAAGATTGAAGACGTGTCTAGTATCTGACACCGAGAAATGCGCGACTATATTCAATTATCTCATTTTCTAAAATTAAAGCGTGTTCGGTGTCCGGTGTCTATCAGTGAGACATGTGATGACATTCAATAATTTCATTTTCTGAAATTATTACCGTCGTGTCTGTCAGGTGTTTGTGTTAGTGTTTCATAGTGTCTCAGTTTTTTGTTATTTTTTTTATATATATCATCATGCATACTTATATTTATATAATATATTTATGTTTCACTTTTGCCTTTTTTTTTTTGGACTGAATTTTGTCTCTTGATATATTGCAGGGAATTAGCTATGCAAAGCTTGCAAACTTGCCTCCTATTATTGGACTGTGTGGGTATTTAATTTATTTCTAGTTTCATGATTTCTGGCATTGAGTAATTGTTATTAATTATGATGGAACATTTGAATATGACACAGATTCAAGTTTTGTGCCACCATTGATATATGCTCTGCTTGGAAGTTCAAGACATGTTGGTGTTGGACCAGTTTCAATTGCATCTTTGGTTATGGGATCAATGTTGAGTGAAACTGTTTCTTTCACTCAAAATCCTACTCTTTATCTTCAATTGGCTTTCACTGCCACCTTTGTTGCTGGTTTATTCCAAGCATCTCTTGGTATACTAAGGTATTCAATTAAACAAAATCATTCATCTTCTGATTTTTATTTTTATTTTACTCTTGCATGTGAAATTAGTTAGTTAAAAATTAGCATAGTAAGATTGGTAAAAAAGTCACATAAGTACGGTCTGACATATGGTAAAAGATTGCATGAACATTTGATAACTTAGGACTCTCCGCATGTGTTTGTGATTTCACTACTAGACTCTTCTGAAAAAAGAAAAAAAAAATCAAAAACTTGTTACTAGTACTTTATTTAATAATAAGACAATTCTAGTCAACTTGAAATTTGAGAATTTATTTATGGTTATTTATTGAAGGACATTTTATTAGTTCCCTATGTTTTGTGAATGATGAAATAATCTTTTGAATTTGTGTATGCAGGTTAGGCTTTGTAATTGATTTCCTATCAAAAGCAACACTGGTCGGTTTCATGGCCGGTGCTGCTATCATTGTGTCACTACAGCAATTGAAAGGGTTACTTGGAATTGTGCACTTTACTAACAAGATGCAAATTATTCCTGTATTGGTCTCTGTTTACAAGCAAAAGGATGAGGTACAGAACACTACCATGTAGTTTAGCACTTTAAGAATGCTTGGAAATTGGAAACAAATTTTTGCATATTGTTTTTTAGTCATTTTCTAAAATTAAATTTATATATTTTTTTGTATATTAAGTAATTTGAACTTTTATTAATAAAATAAATTATGGGTAGTGTTAACTTGTGCCCTTAGGGCACATGTTAAGAAATCTAAATGAAGAAATATTCTATAAAAGTTTGTGCATTTAATTGATTAAAAAGTTAAAGATTAAATTAAATACACACATCTCAATAAATTATTTCCCTATTTGAATCATTAACTTGTGCCTTTAGGGCACAAGTTAACATTTCCCATAAATTATTTATTGTCTCATAAATTCAATTCAAATGGTAAAAAGCTACATAGATATTTGATATGCCTGAACGCAATTCGAATCCATAATATTCTTCATTTCTCATTGTTGTGTGTGGAAGTTTCACATGTATGCTCTTTAGAACTAAATAAAAAAAAATACTTACAAATGTATGACACAATGTAATTTGATGTACAAATTATTTATTTATTTTTGTAACTAATAGTAACAAACATTAAAATTGATTTCTAAATTAAGTAATTTCTATTTTTCTCTTACGATTCCCACCACAATCTTTTCATAGGAATATATAGATAGATTATCATTGCCCTTGCACCCCATGATTGCTAAGTGAAGGATGGCTATTTTTTTCATATATGCTTTCTTTCATGAAGAGAGTATAATGGGCCACTTTTAAATATTGTGATGCTAGTGCAAGTGTAAATACTTGTGAAGTTGACTAAAGTTCTTTTACAACTATTTTTGCAGTGGTCATGGCAAACTATTGTTATGGGATTTGGCTTTTTGGCATTCCTACTCACAACAAGACACATTGTAAATTTCTCTATCTTGCATTATTTAAAACATAGAACTATATCTTATATAGTATAATATATCAGTCTAATGTTATTTGACTTTGATTTGGCTATTCATTTATTTTTCAAGTTCTAATTATTCTTGAAAATTTGCAACAGAGTTTGAGGAAACCAAAACTATTCTGGGCTTCAGCAGCTGCTCCTTTAACATCAGTCATTCTTTCAACCATCTTAGTCTTCCTTCTCAGAAATAAGGCTCATCACATTTCAGTTGTAAGAATTTTACTTACTTCATCATTACTATTTTGAGTGTATGACAAGTAGTATCAATTTAATAATATAAAAAAAATTGAAATATTGGTCAAATTAATCAAAAGTGGTAATAACTGATTGATTCTGTGTATTCTTCGGCAGATTGGGCACTTGGCAAAAGGCGTTAATCCGCCATCAGTGAACCTGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACAGGCATTGTCACAGGAATCCTATCTCTCACAGTATGCAGAACCAAAACTTGTTACACTTTTCTGTCACATACTACATGTTACATACATAAATATAGGACAAAACTTAGGTGTTGTCCTATAGGTACTACTTGTTCTGTTCACCGGTTATAATTTATCACGCGGTTATAATTTTTCAATTAAGTTTAAATTTAAATGATTTGGTTTATCTTATTTGATACACAATGTATACAGTGTATTGTGATTAGAGAACAATAAAAACAGCACACAAAGAGATGCATCTAGATTTTGTACTTAAATATGGCACATGATGCTGTTTTACTTAACTGTGACTTACTCTATTCAACAAAATTTGCCTATGTTTCAGGAAGGAATTGCAGTAGGTAGAACATTTGCAGCACTTAAAAATTACCAAGTGGATGGTAACAAAGAAATGATGGCCATTGGTATTATGAACATAGCTGGCTCTTGTACTTCATGCTATGTCACAACAGGTAATAACTCTTCTTTTATTTATCCACATGACTTAGTTATCTAAGAAGCATCAATTTTGAGAAAGTCTACATTCTTGCAGGATCCTTTTCTCGGTCGGCTGTTAACTACAATGCTGGAGCACAGACTGCGGTTTCTAATATAATCATGGCTTCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCTCTCTTCTACTATACACCAAATGTAGTCTTGGCAACCATCATTATTGCTGCTGTGATTGGACTAATAGATTATCAAGCGGCATATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTTGGTGTTCTGTTCCTTTCTGTACCTTTAGGCCTCAGTATTGCGGTAAGCTGAAAATTTGTTTATCTTGCAAATCCAAATGTATTAGTTTACTGACTATGATGCTCCAACAGTGTAAAACATTTTATACAGTCATCCAATCAGGTTTTATTGTAGCATTATGATGAAACTTGATTGAATGATTATATAAAAAGGTTTACACTGTCAGTGTATAGTCCCTAAACTTAAAATATATTGCATGATAATGCTATGGCATGTGGATACATTATTAATATCAATTTACTTGGCCAAAATCTTCAGGTTGCTATATCAGTCTTCAAGATCCTACTTCATGTCTCCAGACCAAACACTTTGGTTTTAGGAAACATACCTGGAACACAGATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCTAATTCGACTTACCTTCGAGAGAGGTTAGAGAAGGAAATTTCTAGAATTCTTTAAGTTGTTAAGTTCAGTATATATGTCTTTGATTGAATCCATGATTCATATGATTAAGAGCTTCTCCTGCTGCAGGATACTAAGATGGGTTCGAGAAGAGGAAGAGCGTATAAAAGAATATAACGGAACTTCATTGCAGTGCATAATTTTAGACATGACAGGTACTAATTTCATTAGACTTACAACATTTGGTTAGAGTTTAGCAATCATGCACTGTCTGTGTACCTTTTTTTTTGACACAGATGTTCAACCGTATCTCATGTAGTATTATTTGCTAAGATATGTGCATAAATATCTATTTTGTGATATGTGATTAATGTATGTGGACAACTTTCTTACACTATTATGCAATATTTTTCTTTTTCAGCTGTCACAGCAATAGACACAAGTGGGCTTGAAACTTTAGGTGAACTTAGAAAGATGCTAGAAAAGAGATCACTTCAGGTACAGACACTAATTGATATATTGATTTCAGAAGGCCTAAAAAATCTACCATTATTCACTTTCTAACTTCTACATTTTATAATTTGCTACTGCAGCTTGTGCTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTACATATGTCGAAAATTTTGGATACCTTTGGATTTAAAGGACTCTATCTCACAGTGGGAGAAGCTGTTGCTGACATTTCAAGATCTGAGAAAGCTCAACCTTGA
Protein sequence

>MS.gene89102.t1

MGMNCNRVEHFEETTMKIQTEIPIHQVRLPPERTSFNKLKHRLSEIFFPDDPLHRFKNQPSFTKFLLTLQFLFPIFQWGSQYTLTLLRSDVISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSRHVGVGPVSIASLVMGSMLSETVSFTQNPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLVSVYKQKDEWSWQTIVMGFGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTILVFLLRNKAHHISVIGHLAKGVNPPSVNLLYFNGPYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFLSVPLGLSIAVAISVFKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWVREEEERIKEYNGTSLQCIILDMTAVTAIDTSGLETLGELRKMLEKRSLQLVLVNPVGNVMEKLHMSKILDTFGFKGLYLTVGEAVADISRSEKAQP