AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33361

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33361.t1 MTR_4g011970 99.388 654 4 0 1 654 1 654 0.0 1314
MS.gene33361.t1 MTR_2g102243 82.416 654 106 2 3 654 1 647 0.0 1113
MS.gene33361.t1 MTR_2g102243 82.423 586 94 2 3 586 1 579 0.0 996
MS.gene33361.t1 MTR_4g084620 63.854 628 224 2 27 653 15 640 0.0 829
MS.gene33361.t1 MTR_4g084640 60.276 652 246 3 4 654 5 644 0.0 799
MS.gene33361.t1 MTR_7g095430 56.543 619 269 0 29 647 17 635 0.0 722
MS.gene33361.t1 MTR_1g071530 56.390 626 273 0 29 654 20 645 0.0 716
MS.gene33361.t1 MTR_5g061880 53.195 626 292 1 30 654 30 655 0.0 694
MS.gene33361.t1 MTR_2g008470 54.531 618 279 2 28 644 52 668 0.0 667
MS.gene33361.t1 MTR_2g008470 54.531 618 279 2 28 644 33 649 0.0 667
MS.gene33361.t1 MTR_7g095430 57.581 554 235 0 29 582 17 570 0.0 662
MS.gene33361.t1 MTR_3g073780 51.664 631 295 4 30 654 33 659 0.0 653
MS.gene33361.t1 MTR_6g086170 48.304 619 313 3 28 643 6 620 0.0 601
MS.gene33361.t1 MTR_3g073780 54.104 536 243 2 30 562 33 568 0.0 595
MS.gene33361.t1 MTR_3g073780 53.890 527 240 2 30 553 33 559 0.0 579
MS.gene33361.t1 MTR_3g087740 46.951 656 335 7 3 649 1 652 0.0 579
MS.gene33361.t1 MTR_5g061860 48.237 624 300 7 42 649 33 649 0.0 563
MS.gene33361.t1 MTR_3g073730 45.950 605 319 3 58 654 56 660 9.77e-179 523
MS.gene33361.t1 MTR_5g061860 49.811 528 243 6 42 553 33 554 2.37e-169 495
MS.gene33361.t1 MTR_3g087730 42.488 619 336 9 46 649 42 655 1.27e-159 474
MS.gene33361.t1 MTR_7g022870 34.833 600 351 12 61 643 57 633 2.33e-115 361
MS.gene33361.t1 MTR_7g022870 37.278 507 297 10 61 562 57 547 8.61e-106 332
MS.gene33361.t1 MTR_6g024420 34.091 132 68 3 232 363 54 166 9.84e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33361.t1 AT3G15990 74.390 656 163 2 1 654 1 653 0.0 1011
MS.gene33361.t1 AT1G23090 63.826 622 224 1 27 647 1 622 0.0 822
MS.gene33361.t1 AT3G51895 57.075 629 266 2 30 654 20 648 0.0 749
MS.gene33361.t1 AT3G51895 57.075 629 266 2 30 654 65 693 0.0 749
MS.gene33361.t1 AT4G02700 54.531 618 280 1 28 644 8 625 0.0 658
MS.gene33361.t1 AT4G08620 51.669 629 303 1 26 653 19 647 0.0 648
MS.gene33361.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33361.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33361.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33361.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33361.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33361.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33361.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33361.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33361.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33361.t1 AT1G78000 54.315 591 268 2 19 608 18 607 0.0 613
MS.gene33361.t1 AT5G19600 47.674 602 305 3 43 643 28 620 0.0 593
MS.gene33361.t1 AT1G78000 54.787 564 253 2 19 581 18 580 0.0 588
MS.gene33361.t1 AT1G22150 52.613 574 271 1 9 581 10 583 0.0 584
MS.gene33361.t1 AT5G10180 47.876 612 296 6 54 643 59 669 0.0 544
MS.gene33361.t1 AT1G77990 48.611 576 291 3 73 643 88 663 0.0 541
MS.gene33361.t1 AT1G78000 55.741 479 210 2 19 496 18 495 2.52e-170 496
MS.gene33361.t1 AT1G78000 55.730 445 196 1 138 581 1 445 1.21e-157 462
MS.gene33361.t1 AT3G12520 35.364 591 372 9 55 643 28 610 2.42e-118 368
MS.gene33361.t1 AT3G12520 35.364 591 372 9 55 643 44 626 2.84e-118 368
MS.gene33361.t1 AT5G13550 35.108 601 360 12 55 643 57 639 6.29e-115 360
MS.gene33361.t1 AT3G12520 37.400 500 304 8 55 553 44 535 1.46e-106 333

Find 124 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCATGAGTCAAATATTT+TGG 0.137024 4.2:-88176874 MS.gene33361:CDS
GATTCCTGCATTTATCATTT+TGG 0.179334 4.2:-88177779 MS.gene33361:CDS
TCCAATTCTCTATCTTAAAT+TGG 0.180771 4.2:-88181226 MS.gene33361:CDS
GCAAACTTGCCACCAATTAT+TGG 0.190086 4.2:-88181480 MS.gene33361:CDS
TCCTTATAGCTTCTTTATAT+TGG 0.203302 4.2:+88177800 None:intergenic
GCTGAAATCCAGAATAATTT+TGG 0.218068 4.2:+88179378 None:intergenic
TAGGCCAAACACATCGGTTT+TGG 0.225950 4.2:-88177860 MS.gene33361:CDS
TGAAGAGGCCAAAATTATTC+TGG 0.237606 4.2:-88179386 MS.gene33361:CDS
CTTTATATTGGTTTAGGTTA+TGG 0.240443 4.2:+88177812 None:intergenic
TTCACTGCCACTTTCTTTGC+TGG 0.244662 4.2:-88181201 MS.gene33361:CDS
TAGCTTCTTTATATTGGTTT+AGG 0.255101 4.2:+88177806 None:intergenic
TTCAATTGCATCATTGGTTA+TGG 0.258973 4.2:-88181286 MS.gene33361:CDS
TACTAACATAATCCAATAAT+TGG 0.264142 4.2:+88181468 None:intergenic
GCTTGTGTGTGCTCCTTCTT+TGG 0.296349 4.2:-88178154 MS.gene33361:CDS
TTCGTTCACAAAGTTTCTTC+TGG 0.300415 4.2:-88182105 MS.gene33361:CDS
TTCAAAAGGATCAACTCTAT+TGG 0.303368 4.2:+88182286 None:intergenic
TCTCATTGAAAAGACTAAAA+TGG 0.306767 4.2:+88179323 None:intergenic
TCCTGTTTCAATTGCATCAT+TGG 0.308299 4.2:-88181292 MS.gene33361:CDS
GAAACTTTGTGAACGAAGTT+TGG 0.318006 4.2:+88182111 None:intergenic
TGGTTTAGGTTATGGAATAT+TGG 0.321771 4.2:+88177820 None:intergenic
GAAACTGAATCCTAGTAAAA+TGG 0.323837 4.2:+88179581 None:intergenic
GATGCAAATAGTACCTGTTT+TGG 0.335400 4.2:-88180541 MS.gene33361:CDS
ATACTTCAGTGGTCCTCATT+TGG 0.346238 4.2:-88178992 MS.gene33361:CDS
TTGGCTCTTGCTATCAAAAC+TGG 0.349386 4.2:-88178973 MS.gene33361:CDS
GGCAACATTGGTAGGTTTCA+TGG 0.353389 4.2:-88180634 MS.gene33361:CDS
ACCAATATAAAGAAGCTATA+AGG 0.355595 4.2:-88177801 MS.gene33361:CDS
AGTTGCATTGGCAAAGTAGA+TGG 0.357725 4.2:+88177744 None:intergenic
CTCTTCATTTCAGTTCCATT+AGG 0.362515 4.2:-88178127 MS.gene33361:CDS
GGTTTATTCCAATCTTCTCT+TGG 0.372332 4.2:-88181180 MS.gene33361:CDS
CAACAACTCAAAGGGTTACT+AGG 0.374601 4.2:-88180585 MS.gene33361:CDS
GCCAATTTAAGATAGAGAAT+TGG 0.380536 4.2:+88181225 None:intergenic
ATTATCATCACTGCTGTTAT+CGG 0.382764 4.2:-88178235 MS.gene33361:CDS
TATTATCTAACCTTTCTTGC+AGG 0.383951 4.2:+88177719 None:intergenic
ATTTCAGTTCCATTAGGCCT+TGG 0.385772 4.2:-88178121 MS.gene33361:CDS
AACAAAGAAATGATGGCTAT+TGG 0.394027 4.2:-88178534 MS.gene33361:CDS
TTTCCCAAAACCGATGTGTT+TGG 0.399348 4.2:+88177856 None:intergenic
ACCAATGATGCAATTGAAAC+AGG 0.401865 4.2:+88181291 None:intergenic
TGCTCCAGCATTGTAGTTAA+CGG 0.409746 4.2:+88178360 None:intergenic
GATACATTGGTATCTCTGAT+TGG 0.409755 4.2:+88182252 None:intergenic
ATACATTATGCGAACTTAGA+AGG 0.411159 4.2:-88177350 MS.gene33361:CDS
TCAATTGCATCATTGGTTAT+GGG 0.411778 4.2:-88181285 MS.gene33361:CDS
TTCCGCTCTGATATTATATC+CGG 0.412635 4.2:-88182026 MS.gene33361:CDS
TGGTGGCAAGTTTGCAAGCT+TGG 0.413188 4.2:+88181488 None:intergenic
CTTTCTTTAGGATACTGAGA+TGG 0.423739 4.2:-88177569 MS.gene33361:intron
ACCGCAACTCCAAGGCCTAA+TGG 0.431452 4.2:+88178112 None:intergenic
AATCTTCTCTTGGTGTACTA+AGG 0.432718 4.2:-88181170 MS.gene33361:intron
TCCAATGGTGTTTGATACAT+TGG 0.436483 4.2:+88182239 None:intergenic
AATCCATGAAAAGGGTCATC+AGG 0.439230 4.2:+88182140 None:intergenic
GCTTTGATATATTCAGTACT+TGG 0.440775 4.2:-88181339 MS.gene33361:CDS
TCTTCATGTTATGTCACAAC+AGG 0.442713 4.2:-88178486 MS.gene33361:intron
TTTCTTTAGGATACTGAGAT+GGG 0.446275 4.2:-88177568 MS.gene33361:intron
TTCTTGCAGGTAAGTTGCAT+TGG 0.462099 4.2:+88177732 None:intergenic
TTGGATTCCTTTGGAATGAA+AGG 0.464886 4.2:-88176855 MS.gene33361:CDS
CTTGGAAGTTCTAGACATCT+TGG 0.471850 4.2:-88181321 MS.gene33361:CDS
TGCTAGCCTCGCCATTCCTC+AGG 0.473691 4.2:-88181994 MS.gene33361:intron
ATGCAACTTACCTGCAAGAA+AGG 0.475378 4.2:-88177729 MS.gene33361:intron
ATCAAAACTGGACTTGTCAC+TGG 0.484223 4.2:-88178961 MS.gene33361:CDS
TTGAATACAGAGACCAAAAC+AGG 0.486192 4.2:+88180528 None:intergenic
GATAACAGCAGTGATGATAA+TGG 0.492058 4.2:+88178237 None:intergenic
ATGGCTGCTAAGACAACGTT+CGG 0.494450 4.2:+88178256 None:intergenic
TCCATTAGGCCTTGGAGTTG+CGG 0.495832 4.2:-88178113 MS.gene33361:intron
TTATGGAATATTGGTGTCCC+TGG 0.500339 4.2:+88177829 None:intergenic
ACCGCGCCGCGTACAAATTG+TGG 0.502998 4.2:-88178201 MS.gene33361:CDS
TTAGTACACCAAGAGAAGAT+TGG 0.510702 4.2:+88181172 None:intergenic
CTATCAAAGGCAACATTGGT+AGG 0.514805 4.2:-88180642 MS.gene33361:CDS
GATGGTGGATTAAGTCCCTT+TGG 0.516719 4.2:+88179027 None:intergenic
TATAACATGTTTGATGATGG+TGG 0.517759 4.2:+88179012 None:intergenic
AGTTCTAGACATCTTGGTGT+TGG 0.520319 4.2:-88181315 MS.gene33361:CDS
AGCAGTATCAAATATAATCA+TGG 0.524523 4.2:-88178332 MS.gene33361:CDS
TTTCAGGAAGGAATTGCAGT+TGG 0.525631 4.2:-88178597 MS.gene33361:intron
GGATGGAAACAAAGAAATGA+TGG 0.525764 4.2:-88178541 MS.gene33361:CDS
AAATCCTGCTTCACGTCTCT+AGG 0.525812 4.2:-88177879 MS.gene33361:CDS
ACATTGGTAGGTTTCATGGC+TGG 0.529773 4.2:-88180630 MS.gene33361:CDS
TGTCACTACAACAACTCAAA+GGG 0.532681 4.2:-88180593 MS.gene33361:CDS
GAGGCTAGCAATGGTGAGAC+CGG 0.532977 4.2:+88182007 None:intergenic
TTTCTTTGTTTCCATCCACT+TGG 0.534917 4.2:+88178547 None:intergenic
TCAGCCGTTAACTACAATGC+TGG 0.538554 4.2:-88178364 MS.gene33361:CDS
ATGCGAACTTAGAAGGAGAC+TGG 0.538934 4.2:-88177343 MS.gene33361:CDS
TGAAGAGTGGTTCTTTGTGG+TGG 0.543877 4.2:+88182197 None:intergenic
ACCAATGTATCAAACACCAT+TGG 0.544380 4.2:-88182240 MS.gene33361:CDS
AGTACTGAATATATCAAAGC+AGG 0.552239 4.2:+88181342 None:intergenic
AATGAAGAGAACACCAAAGA+AGG 0.552828 4.2:+88178141 None:intergenic
ATTGGTCTTATGAACATAGC+TGG 0.553111 4.2:-88178516 MS.gene33361:CDS
TTGTTATCAACAAGAAGGCT+AGG 0.556830 4.2:+88179559 None:intergenic
ACAGCCAAAATGATAAATGC+AGG 0.557979 4.2:+88177775 None:intergenic
ATACAATCCTTTCATTCCAA+AGG 0.562151 4.2:+88176848 None:intergenic
TTGGCCTAGAGACGTGAAGC+AGG 0.562160 4.2:+88177875 None:intergenic
CTTCAGAACTACCAAGTGGA+TGG 0.562216 4.2:-88178558 MS.gene33361:CDS
TAACATAATCCAATAATTGG+TGG 0.562298 4.2:+88181471 None:intergenic
CTTGTGTTGGCAAATCCTGT+TGG 0.563326 4.2:-88176912 MS.gene33361:CDS
GTGTCACTACAACAACTCAA+AGG 0.565287 4.2:-88180594 MS.gene33361:CDS
GTTAACGGCTGATCGAGAAA+AGG 0.567574 4.2:+88178375 None:intergenic
GACAGAATAACTGAAGTCAA+TGG 0.571902 4.2:+88179348 None:intergenic
GTTGCATTGGCAAAGTAGAT+GGG 0.572656 4.2:+88177745 None:intergenic
GAAGATTGGTGAATTGCCAA+AGG 0.575624 4.2:-88179043 MS.gene33361:intron
ACTGAGATGGGTTCGAGAAG+AGG 0.576650 4.2:-88177556 MS.gene33361:CDS
GTGTCTTGTTATCAACAAGA+AGG 0.577748 4.2:+88179554 None:intergenic
AAGATTGGTGAATTGCCAAA+GGG 0.578839 4.2:-88179042 MS.gene33361:CDS
TTGATTGGTGCAGCTTGTGT+TGG 0.581372 4.2:-88176925 MS.gene33361:intron
TTGATAGCAAGAGCCAAATG+AGG 0.582240 4.2:+88178979 None:intergenic
AAAGGATTGTATCTGTCAGT+AGG 0.583509 4.2:-88176837 MS.gene33361:CDS
TGAAGCTTACCGCAACTCCA+AGG 0.591937 4.2:+88178104 None:intergenic
CGAACCTTGTGAATTTCCAA+TGG 0.598928 4.2:+88182224 None:intergenic
AATTGTGACAGAGCTTGAAG+AGG 0.600357 4.2:-88179401 MS.gene33361:intron
GAATAAACCAGCAAAGAAAG+TGG 0.605122 4.2:+88181194 None:intergenic
AAGTATAACATGTTTGATGA+TGG 0.614399 4.2:+88179009 None:intergenic
TCAAACATGTTATACTTCAG+TGG 0.614426 4.2:-88179003 MS.gene33361:CDS
AACACCATTGGAAATTCACA+AGG 0.624213 4.2:-88182228 MS.gene33361:CDS
AGGAATGGCGAGGCTAGCAA+TGG 0.626508 4.2:+88181998 None:intergenic
TCCACAATTTGTACGCGGCG+CGG 0.627795 4.2:+88178200 None:intergenic
CGTCTCTAGGCCAAACACAT+CGG 0.632092 4.2:-88177866 MS.gene33361:CDS
AAATCCTGTTGGAAATGTGA+TGG 0.641906 4.2:-88176901 MS.gene33361:CDS
CGCCGCGTACAAATTGTGGA+AGG 0.645147 4.2:-88178197 MS.gene33361:CDS
GACATACCTGAGGAATGGCG+AGG 0.651161 4.2:+88181988 None:intergenic
TGGCTGACATTTCATCATCG+TGG 0.662573 4.2:-88176806 MS.gene33361:CDS
TTCACTTCAGAACTACCAAG+TGG 0.666825 4.2:-88178562 MS.gene33361:CDS
GTGACAGGCATAGACACAAG+CGG 0.685657 4.2:-88177378 MS.gene33361:CDS
TCTGTCAGTAGGAGAAGCTG+TGG 0.687633 4.2:-88176826 MS.gene33361:CDS
AACCTTCCACAATTTGTACG+CGG 0.697031 4.2:+88178195 None:intergenic
GAACGCGTAGTAGCACTCAA+CGG 0.697606 4.2:-88177531 MS.gene33361:CDS
AAAAGATAAAGACTATACTG+AGG 0.705367 4.2:+88182047 None:intergenic
TTCGGTGTGTAATAGAACAG+CGG 0.721473 4.2:+88178274 None:intergenic
TGTATTCAAGGAAAGAGACG+AGG 0.732725 4.2:-88180514 MS.gene33361:intron
GACCGGATATAATATCAGAG+CGG 0.772362 4.2:+88182024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGCATAATAAAATATA+TGG - chr4.2:88179581-88179600 MS.gene33361:CDS 10.0%
!! AGAAAATGTTAAAAAATTAA+TGG + chr4.2:88179468-88179487 None:intergenic 10.0%
!! ATAAAAAATTGATAAATAGT+TGG + chr4.2:88179316-88179335 None:intergenic 10.0%
!! ATATGAAAAATTCTTATATA+TGG - chr4.2:88179661-88179680 MS.gene33361:intron 10.0%
!! TAAAAATTAAAAATGAACTT+TGG - chr4.2:88178346-88178365 MS.gene33361:CDS 10.0%
!!! AAATCAAAAAAAAATTCTTT+TGG + chr4.2:88177541-88177560 None:intergenic 10.0%
!!! TATTTTTTGTTGATAATAAT+TGG + chr4.2:88179137-88179156 None:intergenic 10.0%
!! AAACATTAAATAAAGTCAAA+CGG + chr4.2:88180330-88180349 None:intergenic 15.0%
!! AAATAAAAAATAACCTTTGA+AGG - chr4.2:88178394-88178413 MS.gene33361:intron 15.0%
!! AATTATGTAAGAAAATATAG+TGG + chr4.2:88178687-88178706 None:intergenic 15.0%
!! TTGTCCATTAAAAAAAAATT+AGG - chr4.2:88179281-88179300 MS.gene33361:intron 15.0%
!!! AAATATTTTTAATCACCTTA+TGG + chr4.2:88181100-88181119 None:intergenic 15.0%
!!! ATTGTAATTTTTTTTTTGAG+AGG + chr4.2:88178217-88178236 None:intergenic 15.0%
!!! ATTTTTAAAATCAAACTTTC+AGG - chr4.2:88180690-88180709 MS.gene33361:intron 15.0%
!!! GATTCCTAATTTTTTTTTAA+TGG + chr4.2:88179288-88179307 None:intergenic 15.0%
!!! GTGGATTTTTATTTTTATAT+TGG - chr4.2:88177668-88177687 MS.gene33361:intron 15.0%
!!! TTTTTTTTTAATGGACAAAT+AGG + chr4.2:88179279-88179298 None:intergenic 15.0%
!! ATAAAAAAGTGAGAAATTTG+AGG + chr4.2:88178784-88178803 None:intergenic 20.0%
!! ATTGAATAGTTAGTCAATTA+AGG - chr4.2:88179357-88179376 MS.gene33361:CDS 20.0%
!! GTATTAATAGTAATACTAGT+TGG - chr4.2:88178910-88178929 MS.gene33361:intron 20.0%
!! TACTAACATAATCCAATAAT+TGG + chr4.2:88177625-88177644 None:intergenic 20.0%
!! TATTAGTGAAAAAAATTCCA+TGG + chr4.2:88180203-88180222 None:intergenic 20.0%
!! TGTTTACATTTATGATTGAT+TGG - chr4.2:88182150-88182169 MS.gene33361:CDS 20.0%
!! TTGAATAGTTAGTCAATTAA+GGG - chr4.2:88179358-88179377 MS.gene33361:CDS 20.0%
!!! AACAAAAAAGTATATGTATC+TGG - chr4.2:88181415-88181434 MS.gene33361:intron 20.0%
!!! AGAATATTTTTTAAAAGGGA+CGG - chr4.2:88178661-88178680 MS.gene33361:intron 20.0%
!!! AGCTGAGAATATTTTTTAAA+AGG - chr4.2:88178656-88178675 MS.gene33361:intron 20.0%
!!! ATAGTTTTCATTGACTATTT+TGG - chr4.2:88181966-88181985 MS.gene33361:intron 20.0%
!!! CAAAATCAAACTTTTAATTG+TGG - chr4.2:88177353-88177372 MS.gene33361:CDS 20.0%
!!! GCTGAGAATATTTTTTAAAA+GGG - chr4.2:88178657-88178676 MS.gene33361:intron 20.0%
!!! TGAATTTTCCAAATCTTTTT+AGG - chr4.2:88181170-88181189 MS.gene33361:intron 20.0%
!!! TTTTATGATTCTATCATGAA+TGG - chr4.2:88179330-88179349 MS.gene33361:CDS 20.0%
!!! TTTTTAAAAATAAACCCACT+TGG + chr4.2:88178332-88178351 None:intergenic 20.0%
! AAAAGATAAAGACTATACTG+AGG + chr4.2:88177046-88177065 None:intergenic 25.0%
! AAGTATAACATGTTTGATGA+TGG + chr4.2:88180084-88180103 None:intergenic 25.0%
! AATATATCTACAAAAGTAGC+TGG + chr4.2:88179076-88179095 None:intergenic 25.0%
! AATTAAAAGTGACCCTTAAT+TGG + chr4.2:88179208-88179227 None:intergenic 25.0%
! ACATACACTAAATGTAACAA+AGG + chr4.2:88179835-88179854 None:intergenic 25.0%
! ACATATTGCTCTATAAAATG+TGG + chr4.2:88181442-88181461 None:intergenic 25.0%
! ACCAATATAAAGAAGCTATA+AGG - chr4.2:88181289-88181308 MS.gene33361:CDS 25.0%
! AGCAGTATCAAATATAATCA+TGG - chr4.2:88180758-88180777 MS.gene33361:intron 25.0%
! ATATATCTACAAAAGTAGCT+GGG + chr4.2:88179075-88179094 None:intergenic 25.0%
! ATGACTAATAGTATTATGCA+AGG + chr4.2:88177398-88177417 None:intergenic 25.0%
! ATTTGGAAAATTCAGTTGAA+GGG + chr4.2:88181164-88181183 None:intergenic 25.0%
! TAACATAATCCAATAATTGG+TGG + chr4.2:88177622-88177641 None:intergenic 25.0%
! TATAACATCTCTTGTATGTT+TGG + chr4.2:88179980-88179999 None:intergenic 25.0%
! TCCAATTCTCTATCTTAAAT+TGG - chr4.2:88177864-88177883 MS.gene33361:CDS 25.0%
! TCCTTATAGCTTCTTTATAT+TGG + chr4.2:88181293-88181312 None:intergenic 25.0%
! TCTCATTGAAAAGACTAAAA+TGG + chr4.2:88179770-88179789 None:intergenic 25.0%
! TCTTCTAAATGTTCCAAAAA+GGG - chr4.2:88178266-88178285 MS.gene33361:CDS 25.0%
! TGTTACATTTAGTGTATGTT+TGG - chr4.2:88179836-88179855 MS.gene33361:intron 25.0%
! TTCTTCTAAATGTTCCAAAA+AGG - chr4.2:88178265-88178284 MS.gene33361:CDS 25.0%
!! ATAAACACTTGTTAACTGTT+TGG + chr4.2:88182057-88182076 None:intergenic 25.0%
!! CGTAGTTTTTGACAAAATAA+CGG - chr4.2:88179918-88179937 MS.gene33361:intron 25.0%
!! TATCTCTGATTGGATTTTAA+TGG + chr4.2:88176831-88176850 None:intergenic 25.0%
!! TTAACATTTTCTTTTTGCAG+TGG - chr4.2:88179476-88179495 MS.gene33361:intron 25.0%
!! TTTGACTTTCTATATCACAA+GGG - chr4.2:88179103-88179122 MS.gene33361:intron 25.0%
!!! ATTTTCCAAATCTTTTTAGG+TGG - chr4.2:88181173-88181192 MS.gene33361:CDS 25.0%
!!! ATTTTTTTCTCTTCCCTTTT+TGG + chr4.2:88178282-88178301 None:intergenic 25.0%
!!! CTTTATATTGGTTTAGGTTA+TGG + chr4.2:88181281-88181300 None:intergenic 25.0%
!!! CTTTTTTGCTTTGTTTTCTT+TGG - chr4.2:88180025-88180044 MS.gene33361:intron 25.0%
!!! TAGCTTCTTTATATTGGTTT+AGG + chr4.2:88181287-88181306 None:intergenic 25.0%
!!! TCAAATATTTTGGATTCCTT+TGG - chr4.2:88182226-88182245 MS.gene33361:CDS 25.0%
!!! TCTCTTTTTGTATTTTTGCA+GGG - chr4.2:88177568-88177587 MS.gene33361:intron 25.0%
!!! TGGATTTTAATGGTTTCAAA+AGG + chr4.2:88176821-88176840 None:intergenic 25.0%
!!! TGTCTTTTCTGTTTTTACAA+AGG - chr4.2:88181018-88181037 MS.gene33361:intron 25.0%
!!! TGTGATTGATTTTCTATCAA+AGG - chr4.2:88178435-88178454 MS.gene33361:intron 25.0%
!!! TTCTCTATTTTGTTTTGTTG+TGG - chr4.2:88177649-88177668 MS.gene33361:intron 25.0%
!!! TTCTCTTTTTGTATTTTTGC+AGG - chr4.2:88177567-88177586 MS.gene33361:intron 25.0%
!!! TTTTTTGTCTAGTAGTCTAA+CGG + chr4.2:88178828-88178847 None:intergenic 25.0%
AACAAAGAAATGATGGCTAT+TGG - chr4.2:88180556-88180575 MS.gene33361:CDS 30.0%
AACTTACTTATGTTTCAGGA+AGG - chr4.2:88180481-88180500 MS.gene33361:intron 30.0%
ACACTTACATTTGCATCAAT+GGG + chr4.2:88179247-88179266 None:intergenic 30.0%
ACGTATAAGAAGACACAATT+TGG - chr4.2:88181848-88181867 MS.gene33361:intron 30.0%
ATACAATCCTTTCATTCCAA+AGG + chr4.2:88182245-88182264 None:intergenic 30.0%
ATACATTATGCGAACTTAGA+AGG - chr4.2:88181740-88181759 MS.gene33361:intron 30.0%
ATGATAAGTCCTTTCAAACA+AGG - chr4.2:88180385-88180404 MS.gene33361:intron 30.0%
ATTATCATCACTGCTGTTAT+CGG - chr4.2:88180855-88180874 MS.gene33361:intron 30.0%
CAATGAAAACTATGTGACTT+TGG + chr4.2:88181959-88181978 None:intergenic 30.0%
CAGTTAACAAGTGTTTATGT+CGG - chr4.2:88182059-88182078 MS.gene33361:CDS 30.0%
CTTAGAAACATAATCAACCA+TGG - chr4.2:88180183-88180202 MS.gene33361:intron 30.0%
CTTCAACTTACTTATGTTTC+AGG - chr4.2:88180477-88180496 MS.gene33361:intron 30.0%
GAAACTGAATCCTAGTAAAA+TGG + chr4.2:88179512-88179531 None:intergenic 30.0%
GATTTGGAAAATTCAGTTGA+AGG + chr4.2:88181165-88181184 None:intergenic 30.0%
GCTTTGATATATTCAGTACT+TGG - chr4.2:88177751-88177770 MS.gene33361:CDS 30.0%
TAAAAATAAACCCACTTGGT+GGG + chr4.2:88178328-88178347 None:intergenic 30.0%
TAACTGTTTGGAAGAGTTTA+CGG + chr4.2:88182045-88182064 None:intergenic 30.0%
TACACTTACATTTGCATCAA+TGG + chr4.2:88179248-88179267 None:intergenic 30.0%
TATTATCTAACCTTTCTTGC+AGG + chr4.2:88181374-88181393 None:intergenic 30.0%
TATTGCCACCTAAAAAGATT+TGG + chr4.2:88181181-88181200 None:intergenic 30.0%
TCAAACATGTTATACTTCAG+TGG - chr4.2:88180087-88180106 MS.gene33361:intron 30.0%
TCAGCTTATTCCATAACTTA+GGG - chr4.2:88180247-88180266 MS.gene33361:intron 30.0%
TGTTTATACTTAAGTCGAGA+GGG + chr4.2:88181399-88181418 None:intergenic 30.0%
TTAAAAATAAACCCACTTGG+TGG + chr4.2:88178329-88178348 None:intergenic 30.0%
TTATGATTGAGATTGCTTAC+TGG - chr4.2:88179046-88179065 MS.gene33361:intron 30.0%
TTCAAAAGGATCAACTCTAT+TGG + chr4.2:88176807-88176826 None:intergenic 30.0%
TTCAGCTTATTCCATAACTT+AGG - chr4.2:88180246-88180265 MS.gene33361:intron 30.0%
TTGAGTGTTTCTCTTTCTTT+AGG - chr4.2:88181509-88181528 MS.gene33361:intron 30.0%
TTGTTTATACTTAAGTCGAG+AGG + chr4.2:88181400-88181419 None:intergenic 30.0%
! AGTACTGAATATATCAAAGC+AGG + chr4.2:88177751-88177770 None:intergenic 30.0%
! AGTTTTTGACAAAATAACGG+TGG - chr4.2:88179921-88179940 MS.gene33361:intron 30.0%
! CTTTGACTTTCTATATCACA+AGG - chr4.2:88179102-88179121 MS.gene33361:intron 30.0%
! GATTCCTGCATTTATCATTT+TGG - chr4.2:88181311-88181330 MS.gene33361:CDS 30.0%
! GCCAATTTAAGATAGAGAAT+TGG + chr4.2:88177868-88177887 None:intergenic 30.0%
! GCTGAAATCCAGAATAATTT+TGG + chr4.2:88179715-88179734 None:intergenic 30.0%
! GGTTTTTGAATCCATGAAAA+GGG + chr4.2:88176961-88176980 None:intergenic 30.0%
! GTTGCATGAGTCAAATATTT+TGG - chr4.2:88182216-88182235 MS.gene33361:CDS 30.0%
! TCAATTGCATCATTGGTTAT+GGG - chr4.2:88177805-88177824 MS.gene33361:CDS 30.0%
! TGCATAATTTTAGACATGAC+AGG - chr4.2:88181595-88181614 MS.gene33361:intron 30.0%
! TGGTTTAGGTTATGGAATAT+TGG + chr4.2:88181273-88181292 None:intergenic 30.0%
! TGGTTTTTGAATCCATGAAA+AGG + chr4.2:88176962-88176981 None:intergenic 30.0%
! TTCAATTGCATCATTGGTTA+TGG - chr4.2:88177804-88177823 MS.gene33361:CDS 30.0%
! TTTTCTATCAAAGGCAACAT+TGG - chr4.2:88178444-88178463 MS.gene33361:intron 30.0%
!! ACATGTTCCCTATTTTTCAA+TGG - chr4.2:88177017-88177036 MS.gene33361:intron 30.0%
!! ATGTCTAAGTTTTTGAAGAG+TGG + chr4.2:88176909-88176928 None:intergenic 30.0%
!! ATGTTCCCTATTTTTCAATG+GGG - chr4.2:88177019-88177038 MS.gene33361:intron 30.0%
!! CATGTTCCCTATTTTTCAAT+GGG - chr4.2:88177018-88177037 MS.gene33361:intron 30.0%
!! TATAACATGTTTGATGATGG+TGG + chr4.2:88180081-88180100 None:intergenic 30.0%
!! TTTCTTTAGGATACTGAGAT+GGG - chr4.2:88181522-88181541 MS.gene33361:intron 30.0%
!!! CTTTGTTTTCTTTGGAAGAT+TGG - chr4.2:88180033-88180052 MS.gene33361:intron 30.0%
!!! GAATGTTTTGAAGAGTTTTG+TGG + chr4.2:88178987-88179006 None:intergenic 30.0%
AAAGGATTGTATCTGTCAGT+AGG - chr4.2:88182253-88182272 MS.gene33361:CDS 35.0%
AAATCCTGTTGGAAATGTGA+TGG - chr4.2:88182189-88182208 MS.gene33361:CDS 35.0%
AACACCATTGGAAATTCACA+AGG - chr4.2:88176862-88176881 MS.gene33361:CDS 35.0%
AAGATTGGTGAATTGCCAAA+GGG - chr4.2:88180048-88180067 MS.gene33361:intron 35.0%
AATGAAGAGAACACCAAAGA+AGG + chr4.2:88180952-88180971 None:intergenic 35.0%
ACAGCCAAAATGATAAATGC+AGG + chr4.2:88181318-88181337 None:intergenic 35.0%
ACAGCTGCAAAAAAAAAGCA+AGG + chr4.2:88181694-88181713 None:intergenic 35.0%
ACCAATGATGCAATTGAAAC+AGG + chr4.2:88177802-88177821 None:intergenic 35.0%
ACCAATGTATCAAACACCAT+TGG - chr4.2:88176850-88176869 MS.gene33361:CDS 35.0%
ACTGGAACAAAAATCACTTC+AGG - chr4.2:88181765-88181784 MS.gene33361:intron 35.0%
AGCTACTCAATATGTCCATT+CGG + chr4.2:88179183-88179202 None:intergenic 35.0%
ATGCATGCAAGATGAAACTA+TGG + chr4.2:88177423-88177442 None:intergenic 35.0%
ATGTTTCTCACCCTAAGTTA+TGG + chr4.2:88180260-88180279 None:intergenic 35.0%
ATTGAGTAGCTAGCCAATTA+AGG - chr4.2:88179192-88179211 MS.gene33361:intron 35.0%
CTCTTCATTTCAGTTCCATT+AGG - chr4.2:88180963-88180982 MS.gene33361:intron 35.0%
GAAACACTCAAAAAATGCCT+CGG + chr4.2:88181500-88181519 None:intergenic 35.0%
GAAACTTTGTGAACGAAGTT+TGG + chr4.2:88176982-88177001 None:intergenic 35.0%
GAATAAACCAGCAAAGAAAG+TGG + chr4.2:88177899-88177918 None:intergenic 35.0%
GACAGAATAACTGAAGTCAA+TGG + chr4.2:88179745-88179764 None:intergenic 35.0%
GATAACAGCAGTGATGATAA+TGG + chr4.2:88180856-88180875 None:intergenic 35.0%
GATACATTGGTATCTCTGAT+TGG + chr4.2:88176841-88176860 None:intergenic 35.0%
GGATGGAAACAAAGAAATGA+TGG - chr4.2:88180549-88180568 MS.gene33361:CDS 35.0%
GGTTTATTCCAATCTTCTCT+TGG - chr4.2:88177910-88177929 MS.gene33361:intron 35.0%
GTTGTATGCAACTACAATTG+TGG + chr4.2:88177201-88177220 None:intergenic 35.0%
TATAAGCCTTAGAGCATGTT+TGG + chr4.2:88180415-88180434 None:intergenic 35.0%
TCAGGTATGTCAAAATATCG+AGG - chr4.2:88177114-88177133 MS.gene33361:intron 35.0%
TCCAATGGTGTTTGATACAT+TGG + chr4.2:88176854-88176873 None:intergenic 35.0%
TCCTGTTTCAATTGCATCAT+TGG - chr4.2:88177798-88177817 MS.gene33361:CDS 35.0%
TCTCGTAAGTATAGTTCAGT+TGG - chr4.2:88178719-88178738 MS.gene33361:intron 35.0%
TCTTCATGTTATGTCACAAC+AGG - chr4.2:88180604-88180623 MS.gene33361:CDS 35.0%
TGAAGAGGCCAAAATTATTC+TGG - chr4.2:88179704-88179723 MS.gene33361:intron 35.0%
TGTCACTACAACAACTCAAA+GGG - chr4.2:88178497-88178516 MS.gene33361:CDS 35.0%
TTAGTACACCAAGAGAAGAT+TGG + chr4.2:88177921-88177940 None:intergenic 35.0%
TTCCGCTCTGATATTATATC+CGG - chr4.2:88177064-88177083 MS.gene33361:intron 35.0%
TTCGTTCACAAAGTTTCTTC+TGG - chr4.2:88176985-88177004 MS.gene33361:intron 35.0%
TTGAATACAGAGACCAAAAC+AGG + chr4.2:88178565-88178584 None:intergenic 35.0%
TTGAGTAGCTAGCCAATTAA+GGG - chr4.2:88179193-88179212 MS.gene33361:intron 35.0%
TTGTTATCAACAAGAAGGCT+AGG + chr4.2:88179534-88179553 None:intergenic 35.0%
TTTGGAAGAGTTTACGGAAA+CGG + chr4.2:88182039-88182058 None:intergenic 35.0%
! AAAAATAAACCCACTTGGTG+GGG + chr4.2:88178327-88178346 None:intergenic 35.0%
! AAGTTTTTGCAAGCATGATG+TGG - chr4.2:88177243-88177262 MS.gene33361:intron 35.0%
! AATCTTCTCTTGGTGTACTA+AGG - chr4.2:88177920-88177939 MS.gene33361:intron 35.0%
! ACATTTCAAAGATTAGTCCG+AGG - chr4.2:88181480-88181499 MS.gene33361:CDS 35.0%
! ACTGTGATTTTGCCAAACTT+AGG - chr4.2:88179948-88179967 MS.gene33361:intron 35.0%
! CTGTGATTTTGCCAAACTTA+GGG - chr4.2:88179949-88179968 MS.gene33361:intron 35.0%
! GATGCAAATAGTACCTGTTT+TGG - chr4.2:88178549-88178568 MS.gene33361:CDS 35.0%
! GTGTCTTGTTATCAACAAGA+AGG + chr4.2:88179539-88179558 None:intergenic 35.0%
! TCATGGCAAACCATTTTACT+AGG - chr4.2:88179499-88179518 MS.gene33361:intron 35.0%
! TTTCTTTGTTTCCATCCACT+TGG + chr4.2:88180546-88180565 None:intergenic 35.0%
! TTTTCCATCACATTTCCAAC+AGG + chr4.2:88182196-88182215 None:intergenic 35.0%
! TTTTCTTTTTGCAGTGGTCA+TGG - chr4.2:88179482-88179501 MS.gene33361:intron 35.0%
!! ATTGGTCTTATGAACATAGC+TGG - chr4.2:88180574-88180593 MS.gene33361:CDS 35.0%
!! ATTTTGACATACCTGAGGAA+TGG + chr4.2:88177110-88177129 None:intergenic 35.0%
!! CTTTCTTTAGGATACTGAGA+TGG - chr4.2:88181521-88181540 MS.gene33361:intron 35.0%
!! TTGGATTCCTTTGGAATGAA+AGG - chr4.2:88182235-88182254 MS.gene33361:CDS 35.0%
!! TTTGGATTGCCTTGTTTGAA+AGG + chr4.2:88180397-88180416 None:intergenic 35.0%
!! TTTTGAAGAGTGGTTCTTTG+TGG + chr4.2:88176899-88176918 None:intergenic 35.0%
!!! AATATTTTTTCCCCACCAAG+TGG - chr4.2:88178314-88178333 MS.gene33361:CDS 35.0%
!!! ATATTTTTTCCCCACCAAGT+GGG - chr4.2:88178315-88178334 MS.gene33361:CDS 35.0%
!!! TCGATATTTTGACATACCTG+AGG + chr4.2:88177115-88177134 None:intergenic 35.0%
!!! TGTTTTGGTCTCTGTATTCA+AGG - chr4.2:88178564-88178583 MS.gene33361:CDS 35.0%
!!! TTTTTTTTTGCAGCTGTGAC+AGG - chr4.2:88181697-88181716 MS.gene33361:intron 35.0%
AACCTTCCACAATTTGTACG+CGG + chr4.2:88180898-88180917 None:intergenic 40.0%
AACTACAATTGTGGTCGCAT+CGG + chr4.2:88177192-88177211 None:intergenic 40.0%
AATCCATGAAAAGGGTCATC+AGG + chr4.2:88176953-88176972 None:intergenic 40.0%
AATTGTGACAGAGCTTGAAG+AGG - chr4.2:88179689-88179708 MS.gene33361:intron 40.0%
ATACTTCAGTGGTCCTCATT+TGG - chr4.2:88180098-88180117 MS.gene33361:intron 40.0%
ATCAAAACTGGACTTGTCAC+TGG - chr4.2:88180129-88180148 MS.gene33361:intron 40.0%
ATCTTGTGCGATGCAAAATG+AGG + chr4.2:88181801-88181820 None:intergenic 40.0%
ATGCAACTTACCTGCAAGAA+AGG - chr4.2:88181361-88181380 MS.gene33361:intron 40.0%
ATTTCAGTTCCATTAGGCCT+TGG - chr4.2:88180969-88180988 MS.gene33361:intron 40.0%
CAACAACTCAAAGGGTTACT+AGG - chr4.2:88178505-88178524 MS.gene33361:CDS 40.0%
CGAACCTTGTGAATTTCCAA+TGG + chr4.2:88176869-88176888 None:intergenic 40.0%
CTACTCAATATGTCCATTCG+GGG + chr4.2:88179181-88179200 None:intergenic 40.0%
CTATCAAAGGCAACATTGGT+AGG - chr4.2:88178448-88178467 MS.gene33361:intron 40.0%
GAAGATTGGTGAATTGCCAA+AGG - chr4.2:88180047-88180066 MS.gene33361:intron 40.0%
GACCGGATATAATATCAGAG+CGG + chr4.2:88177069-88177088 None:intergenic 40.0%
GAGGACCCCATTGAAAAATA+GGG + chr4.2:88177027-88177046 None:intergenic 40.0%
GCAAACTTGCCACCAATTAT+TGG - chr4.2:88177610-88177629 MS.gene33361:intron 40.0%
GCTACTCAATATGTCCATTC+GGG + chr4.2:88179182-88179201 None:intergenic 40.0%
TAACCTGTGTACACCTTCAA+AGG + chr4.2:88178410-88178429 None:intergenic 40.0%
TCATCTTGCATGCATGAGTT+TGG - chr4.2:88177428-88177447 MS.gene33361:intron 40.0%
TCGGGGTAGAATCAGAAAAA+AGG + chr4.2:88179164-88179183 None:intergenic 40.0%
TGAGGACCCCATTGAAAAAT+AGG + chr4.2:88177028-88177047 None:intergenic 40.0%
TGCTCCAGCATTGTAGTTAA+CGG + chr4.2:88180733-88180752 None:intergenic 40.0%
TGTATTCAAGGAAAGAGACG+AGG - chr4.2:88178576-88178595 MS.gene33361:CDS 40.0%
TTAGGGTGAGAAACATGTCT+AGG - chr4.2:88180264-88180283 MS.gene33361:intron 40.0%
TTCACTTCAGAACTACCAAG+TGG - chr4.2:88180528-88180547 MS.gene33361:CDS 40.0%
TTCTTGCAGGTAAGTTGCAT+TGG + chr4.2:88181361-88181380 None:intergenic 40.0%
TTTCAGGAAGGAATTGCAGT+TGG - chr4.2:88180493-88180512 MS.gene33361:intron 40.0%
TTTCCCAAAACCGATGTGTT+TGG + chr4.2:88181237-88181256 None:intergenic 40.0%
! AGTTGCATTGGCAAAGTAGA+TGG + chr4.2:88181349-88181368 None:intergenic 40.0%
! GTGTCACTACAACAACTCAA+AGG - chr4.2:88178496-88178515 MS.gene33361:CDS 40.0%
! GTTGCATTGGCAAAGTAGAT+GGG + chr4.2:88181348-88181367 None:intergenic 40.0%
! GTTTGACTTTGACGAGATCA+CGG - chr4.2:88179865-88179884 MS.gene33361:intron 40.0%
! TAACCTTTGAAGGTGTACAC+AGG - chr4.2:88178404-88178423 MS.gene33361:intron 40.0%
! TTATGGAATATTGGTGTCCC+TGG + chr4.2:88181264-88181283 None:intergenic 40.0%
! TTCGGTGTGTAATAGAACAG+CGG + chr4.2:88180819-88180838 None:intergenic 40.0%
! TTGATAGCAAGAGCCAAATG+AGG + chr4.2:88180114-88180133 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+TGG - chr4.2:88180117-88180136 MS.gene33361:intron 40.0%
! TTTCCTGATGACCCTTTTCA+TGG - chr4.2:88176947-88176966 MS.gene33361:intron 40.0%
! TTTGAAGGTGTACACAGGTT+AGG - chr4.2:88178409-88178428 MS.gene33361:intron 40.0%
! TTTTCTGATTCTACCCCGAA+TGG - chr4.2:88179165-88179184 MS.gene33361:intron 40.0%
!! AGTTCTAGACATCTTGGTGT+TGG - chr4.2:88177775-88177794 MS.gene33361:CDS 40.0%
!! CTTGGAAGTTCTAGACATCT+TGG - chr4.2:88177769-88177788 MS.gene33361:CDS 40.0%
!! GTTTGGATTAGCCCTAAGTT+TGG + chr4.2:88179963-88179982 None:intergenic 40.0%
!! TAGTTCAGTTGGTAGCTACT+AGG - chr4.2:88178730-88178749 MS.gene33361:intron 40.0%
AAATCCTGCTTCACGTCTCT+AGG - chr4.2:88181211-88181230 MS.gene33361:CDS 45.0%
ACATTGGTAGGTTTCATGGC+TGG - chr4.2:88178460-88178479 MS.gene33361:intron 45.0%
ATGCGAACTTAGAAGGAGAC+TGG - chr4.2:88181747-88181766 MS.gene33361:intron 45.0%
ATGGCTGCTAAGACAACGTT+CGG + chr4.2:88180837-88180856 None:intergenic 45.0%
CTTCAGAACTACCAAGTGGA+TGG - chr4.2:88180532-88180551 MS.gene33361:CDS 45.0%
GGCAACATTGGTAGGTTTCA+TGG - chr4.2:88178456-88178475 MS.gene33361:intron 45.0%
GGCAATCCAAACATGCTCTA+AGG - chr4.2:88180406-88180425 MS.gene33361:intron 45.0%
GTTAACGGCTGATCGAGAAA+AGG + chr4.2:88180718-88180737 None:intergenic 45.0%
TCAGCCGTTAACTACAATGC+TGG - chr4.2:88180726-88180745 MS.gene33361:intron 45.0%
TGAAGAGTGGTTCTTTGTGG+TGG + chr4.2:88176896-88176915 None:intergenic 45.0%
TGGCTGACATTTCATCATCG+TGG - chr4.2:88182284-88182303 MS.gene33361:CDS 45.0%
TTGATTGGTGCAGCTTGTGT+TGG - chr4.2:88182165-88182184 MS.gene33361:CDS 45.0%
! CTTGTGTTGGCAAATCCTGT+TGG - chr4.2:88182178-88182197 MS.gene33361:CDS 45.0%
!! GATGGTGGATTAAGTCCCTT+TGG + chr4.2:88180066-88180085 None:intergenic 45.0%
!! TTCACTGCCACTTTCTTTGC+TGG - chr4.2:88177889-88177908 MS.gene33361:CDS 45.0%
!!! AGGCCAAACACATCGGTTTT+GGG - chr4.2:88181231-88181250 MS.gene33361:CDS 45.0%
!!! CGGTTTTGGGAAACATTCCA+GGG - chr4.2:88181244-88181263 MS.gene33361:CDS 45.0%
!!! TAGGCCAAACACATCGGTTT+TGG - chr4.2:88181230-88181249 MS.gene33361:CDS 45.0%
!!! TCGGTTTTGGGAAACATTCC+AGG - chr4.2:88181243-88181262 MS.gene33361:CDS 45.0%
!! AAAAAAAAAAAAAACTATAA+TGG + chr4.2:88177472-88177491 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr4.2:88177483-88177502 MS.gene33361:intron 5.0%
CGTCTCTAGGCCAAACACAT+CGG - chr4.2:88181224-88181243 MS.gene33361:CDS 50.0%
GAACGCGTAGTAGCACTCAA+CGG - chr4.2:88181559-88181578 MS.gene33361:intron 50.0%
GCTTGTGTGTGCTCCTTCTT+TGG - chr4.2:88180936-88180955 MS.gene33361:intron 50.0%
GTGACAGGCATAGACACAAG+CGG - chr4.2:88181712-88181731 MS.gene33361:intron 50.0%
TCCATTAGGCCTTGGAGTTG+CGG - chr4.2:88180977-88180996 MS.gene33361:intron 50.0%
TCTGTCAGTAGGAGAAGCTG+TGG - chr4.2:88182264-88182283 MS.gene33361:CDS 50.0%
TGAAGCTTACCGCAACTCCA+AGG + chr4.2:88180989-88181008 None:intergenic 50.0%
TGGTGGCAAGTTTGCAAGCT+TGG + chr4.2:88177605-88177624 None:intergenic 50.0%
! ACTGAGATGGGTTCGAGAAG+AGG - chr4.2:88181534-88181553 MS.gene33361:intron 50.0%
ACCGCAACTCCAAGGCCTAA+TGG + chr4.2:88180981-88181000 None:intergenic 55.0%
AGGAATGGCGAGGCTAGCAA+TGG + chr4.2:88177095-88177114 None:intergenic 55.0%
CGCCGCGTACAAATTGTGGA+AGG - chr4.2:88180893-88180912 MS.gene33361:intron 55.0%
GACATACCTGAGGAATGGCG+AGG + chr4.2:88177105-88177124 None:intergenic 55.0%
GAGGCTAGCAATGGTGAGAC+CGG + chr4.2:88177086-88177105 None:intergenic 55.0%
TCCACAATTTGTACGCGGCG+CGG + chr4.2:88180893-88180912 None:intergenic 55.0%
TTGGCCTAGAGACGTGAAGC+AGG + chr4.2:88181218-88181237 None:intergenic 55.0%
ACCGCGCCGCGTACAAATTG+TGG - chr4.2:88180889-88180908 MS.gene33361:intron 60.0%
! TGCTAGCCTCGCCATTCCTC+AGG - chr4.2:88177096-88177115 MS.gene33361:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 88176791 88182321 88176791 ID=MS.gene33361
chr4.2 mRNA 88176791 88182321 88176791 ID=MS.gene33361.t1;Parent=MS.gene33361
chr4.2 exon 88181995 88182321 88181995 ID=MS.gene33361.t1.exon1;Parent=MS.gene33361.t1
chr4.2 CDS 88181995 88182321 88181995 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88181475 88181523 88181475 ID=MS.gene33361.t1.exon2;Parent=MS.gene33361.t1
chr4.2 CDS 88181475 88181523 88181475 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88181171 88181378 88181171 ID=MS.gene33361.t1.exon3;Parent=MS.gene33361.t1
chr4.2 CDS 88181171 88181378 88181171 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88180515 88180686 88180515 ID=MS.gene33361.t1.exon4;Parent=MS.gene33361.t1
chr4.2 CDS 88180515 88180686 88180515 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88179551 88179616 88179551 ID=MS.gene33361.t1.exon5;Parent=MS.gene33361.t1
chr4.2 CDS 88179551 88179616 88179551 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88179299 88179412 88179299 ID=MS.gene33361.t1.exon6;Parent=MS.gene33361.t1
chr4.2 CDS 88179299 88179412 88179299 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88178945 88179061 88178945 ID=MS.gene33361.t1.exon7;Parent=MS.gene33361.t1
chr4.2 CDS 88178945 88179061 88178945 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88178487 88178613 88178487 ID=MS.gene33361.t1.exon8;Parent=MS.gene33361.t1
chr4.2 CDS 88178487 88178613 88178487 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88178114 88178400 88178114 ID=MS.gene33361.t1.exon9;Parent=MS.gene33361.t1
chr4.2 CDS 88178114 88178400 88178114 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88177730 88177920 88177730 ID=MS.gene33361.t1.exon10;Parent=MS.gene33361.t1
chr4.2 CDS 88177730 88177920 88177730 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88177496 88177581 88177496 ID=MS.gene33361.t1.exon11;Parent=MS.gene33361.t1
chr4.2 CDS 88177496 88177581 88177496 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88177326 88177402 88177326 ID=MS.gene33361.t1.exon12;Parent=MS.gene33361.t1
chr4.2 CDS 88177326 88177402 88177326 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
chr4.2 exon 88176791 88176934 88176791 ID=MS.gene33361.t1.exon13;Parent=MS.gene33361.t1
chr4.2 CDS 88176791 88176934 88176791 ID=cds.MS.gene33361.t1;Parent=MS.gene33361.t1
Gene Sequence

>MS.gene33361

ATGGGTGTGAATTCCAATAGAGTTGATCCTTTTGAAACCATTAAAATCCAATCAGAGATACCAATGTATCAAACACCATTGGAAATTCACAAGGTTCGTTTGCCACCACAAAGAACCACTCTTCAAAAACTTAGACATAGACTCTCTGAAATCTTTTTTCCTGATGACCCTTTTCATGGATTCAAAAACCAAACTTCGTTCACAAAGTTTCTTCTGGCTCTTCAATACATGTTCCCTATTTTTCAATGGGGTCCTCAGTATAGTCTTTATCTTTTCCGCTCTGATATTATATCCGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGTATGTCAAAATATCGAGGTTTTAAATTGAAGTCGCAATAACATTTGTTAAAAGAGTATATATAGATGTTACCGATGCGACCACAATTGTAGTTGCATACAACGATTTTTTAAACGTCGCATAATAAGTTTTTGCAAGCATGATGTGGTTTGTTTAATTCAAAATTCGTAAAATGAAAAAGTTTTATCAAATAAAATGTTACTAACGACTATTTTACAAACTTTTGTTGAAGTTACAAAATCAAACTTTTAATTGTGGTTGATCACAATATTTGAGACCTTGCATAATACTATTAGTCATAGCCATAGTTTCATCTTGCATGCATGAGTTTGGTTTTGTTAATGTATACTACCATTATAGTTTTTTTTTTTTTTTTTTTTTTTTGAGGATATAAGTTAATATTTAATTTAATGAAACTTGCCAAAAGAATTTTTTTTTGATTTTTTTCTTTCTCTTTTTGTATTTTTGCAGGGAATCAGTTATGCCAAGCTTGCAAACTTGCCACCAATTATTGGATTATGTTAGTATTCATTCTCTATTTTGTTTTGTTGTGGATTTTTATTTTTATATTGGTTGATATTTAATTAAATTTATATATCATCATTACTACATGCAGATTCAAGTTTTGTACCTGCTTTGATATATTCAGTACTTGGAAGTTCTAGACATCTTGGTGTTGGTCCTGTTTCAATTGCATCATTGGTTATGGGATCAATGTTAAGTGAAAGTGTTTCTTATAGTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGTTTATTCCAATCTTCTCTTGGTGTACTAAGGTACTAATAATCAATCATGCACAAATTAAAATGTTTTCAAAAAAAGAAAAAGAGAAATTAGCATAATATCATCACTTAACGTAGAACATAAATTATATTAGAAGTTTATTTTTACAAAAAAAAAAACAATTATAGAAAATTAAATAATTTAGTTGAGTATTTGTTCAATAAAGTGCTATAGAAAAATAATTAAGTTCTTATTAAAAAGTTACTCTGAAAATGAAATAAACTAAAAATCATTTCATAATATTTTAATATAATTTTTATGAGAGCCTCTCAAAAAAAAAATTACAATGAGATAAACTCAAATGAGTTTTGATAAATTCTTCTAAATGTTCCAAAAAGGGAAGAGAAAAAAATGAAGAAAATTACAATATTTTTTCCCCACCAAGTGGGTTTATTTTTAAAAATTAAAAATGAACTTTGGAAAATTATATTTTATGATTAAAAATAAATAAAAAATAACCTTTGAAGGTGTACACAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCAACATTGGTAGGTTTCATGGCTGGTGCAGCAATCATTGTGTCACTACAACAACTCAAAGGGTTACTAGGAATAGTTCATTTCACAAGCAAGATGCAAATAGTACCTGTTTTGGTCTCTGTATTCAAGGAAAGAGACGAGGTATATTTTGATTTTGATGTTTTTTTTAATGTTAAAAAATTATACATTAAAGAATCTAAGCTGAGAATATTTTTTAAAAGGGACGGCCACTATATTTTCTTACATAATTTATAATTTAACGTCTCGTAAGTATAGTTCAGTTGGTAGCTACTAGGAGCATTATTACAAGAATCAGAGTTTGAACCTCAAATTTCTCACTTTTTTATACATAATGTGTGTGAATGTAGCCGTTAGACTACTAGACAAAAAAAAATCTAAATAATTATGTTTTGCAAGTTTTTAAAATATTAATTTTTTGAAAGCGTTTTTAAAGTATTAATAGTAATACTAGTTGGTAGAGTAAAGCTACAATTGAAAAAATAAAATAAAAAATAAATTAATCACAACCACAAAACTCTTCAAAACATTCTTATAGCACTGATTCTGTTTTAAGAAATAAGAATTAACATTATGATTGAGATTGCTTACTGGAATCCCAGCTACTTTTGTAGATATATTTTTTTACTTTGACTTTCTATATCACAAGGGATCATATTCCAATTATTATCAACAAAAAATATATTCCTTTTTTCTGATTCTACCCCGAATGGACATATTGAGTAGCTAGCCAATTAAGGGTCACTTTTAATTGAAAATACATAGTTGTCCCATTGATGCAAATGTAAGTGTAATGTAATACCTATTTGTCCATTAAAAAAAAATTAGGAATCATATTCCAACTATTTATCAATTTTTTATGATTCTATCATGAATGGACATATTGAATAGTTAGTCAATTAAGGGTCACTTTTAAATGAAAATACATATTTGTCCCATTGATGCAAATGTAAGTGTAATTTAATTAATTATAATTACATACATATATGTCCATTAATTTTTTAACATTTTCTTTTTGCAGTGGTCATGGCAAACCATTTTACTAGGATTCAGTTTCCTAGCCTTCTTGTTGATAACAAGACACATTGTAAGATTCTTCATCTTGCAATTTGCATAATAAAATATATGGACTATTGTTTTTTGCTTTGATAAGTGATAATTATTTTAATTTCATTTGCTTCTTAATATATGAAAAATTCTTATATATGGTTTTAAATTGTGACAGAGCTTGAAGAGGCCAAAATTATTCTGGATTTCAGCAGCTGCACCATTGACTTCAGTTATTCTGTCAACCATTTTAGTCTTTTCAATGAGACATAAGATCAATAAAATAGCTATTGTAAGAAAAGACACTTTACCTTTGTTACATTTAGTGTATGTTTGGAATAATGTTTGACTTTGACGAGATCACGGTCACATTGTGATTCTGTTGAAGCTTCAAAGCGTAGTTTTTGACAAAATAACGGTGGCAACACTGTGATTTTGCCAAACTTAGGGCTAATCCAAACATACAAGAGATGTTATATAGAAATGATCTTATTAATAACTCTCTTTTTTGCTTTGTTTTCTTTGGAAGATTGGTGAATTGCCAAAGGGACTTAATCCACCATCATCAAACATGTTATACTTCAGTGGTCCTCATTTGGCTCTTGCTATCAAAACTGGACTTGTCACTGGAATCTTGTCTCTCACTGTAAGCTTTCTCAAACTTAGAAACATAATCAACCATGGAATTTTTTTCACTAATACTACTACATGTCTATAAGTTGTTTTCAGCTTATTCCATAACTTAGGGTGAGAAACATGTCTAGGATAACTTATGAAAAAAAAAAACTTATAGTTTATATGAAAACCGTTTGACTTTATTTAATGTTTTGTTATAGAAATAGCTTGTACATATAAGCACTTAAATGATAAGTCCTTTCAAACAAGGCAATCCAAACATGCTCTAAGGCTTATAGCTTCAACAAACAAACAAAATGAAATACATCAAATAACTCAACTTCAACTTACTTATGTTTCAGGAAGGAATTGCAGTTGGAAGAACATTTGCTTCACTTCAGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGCAATGATTCATCACAAGTAGTTGTTAAAGAAATCAAAGTTTTTCAAGAAAAATATCAATTCTAATTTTTAAAATCAAACTTTCAGGATCCTTTTCTCGATCAGCCGTTAACTACAATGCTGGAGCACAGACAGCAGTATCAAATATAATCATGGCATCAGCAGTTCTTGTGACACTTCTGTTTCTCATGCCGCTGTTCTATTACACACCGAACGTTGTCTTAGCAGCCATTATCATCACTGCTGTTATCGGTCTAATTGATTACCGCGCCGCGTACAAATTGTGGAAGGTTGACAAGCTTGATTTCTTAGCTTGTGTGTGCTCCTTCTTTGGTGTTCTCTTCATTTCAGTTCCATTAGGCCTTGGAGTTGCGGTAAGCTTCAAAATTCACATGTCTTTTCTGTTTTTACAAAGGATATAACTCATATACACTGACAATGTAAAAATCATTTCACTGTCGATCATTCGTAACCATAAGGTGATTAAAAATATTTGACTTCAATCATAACTATTTCTGTTAAAAGCATGTTCATTACCCTTCAACTGAATTTTCCAAATCTTTTTAGGTGGCAATATCAGTCTTCAAAATCCTGCTTCACGTCTCTAGGCCAAACACATCGGTTTTGGGAAACATTCCAGGGACACCAATATTCCATAACCTAAACCAATATAAAGAAGCTATAAGGATTCCTGCATTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCCAATGCAACTTACCTGCAAGAAAGGTTAGATAATACTCCCTCTCGACTTAAGTATAAACAAAAAAGTATATGTATCTGGTCCACATTTTATAGAGCAATATGTATGCTTGTCAAGTTTTGTACATTTCAAAGATTAGTCCGAGGCATTTTTTGAGTGTTTCTCTTTCTTTAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACGCGTAGTAGCACTCAACGGAAGTGCATTGAAATGCATAATTTTAGACATGACAGGCAAGTATTTCGTTTCGCTTGTGAAGTTTGTTATCAAAGTTTTGAGATCATTTTGATTTAAAAGTTGTATTTTTCCTTGCTTTTTTTTTGCAGCTGTGACAGGCATAGACACAAGCGGAATCGATACATTATGCGAACTTAGAAGGAGACTGGAACAAAAATCACTTCAGGTAAATATATACCTCATTTTGCATCGCACAAGATGCAACACTAGTATATACTAATTGTAACACGTATAAGAAGACACAATTTGGATAAATAGCTTAATTAAACACTTATAACATAAGTGTTTATCATATAAATGCTTATGTATAAGCTATTTCTATAACATAAGATAAACCAAAGTCACATAGTTTTCATTGACTATTTTGGAGAACTTATGAAAATAAGCTAAAAACAACTAATAGACAAGCTATAAACCGTTTCCGTAAACTCTTCCAAACAGTTAACAAGTGTTTATGTCGGTAAATAAACTTAAATAAATAAATTTGAACATGTCTTAAATTTAATACTTCACTAAGCTTTGTTTCTAATGTTTACATTTATGATTGATTGGTGCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATGAGTCAAATATTTTGGATTCCTTTGGAATGAAAGGATTGTATCTGTCAGTAGGAGAAGCTGTGGCTGACATTTCATCATCGTGGAAAGCTCAGCCTTGA
Protein sequence

>MS.gene33361.t1

MGVNSNRVDPFETIKIQSEIPMYQTPLEIHKVRLPPQRTTLQKLRHRLSEIFFPDDPFHGFKNQTSFTKFLLALQYMFPIFQWGPQYSLYLFRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSVLGSSRHLGVGPVSIASLVMGSMLSESVSYSQDPILYLKLAFTATFFAGLFQSSLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTSKMQIVPVLVSVFKERDEWSWQTILLGFSFLAFLLITRHISLKRPKLFWISAAAPLTSVILSTILVFSMRHKINKIAIIGELPKGLNPPSSNMLYFSGPHLALAIKTGLVTGILSLTEGIAVGRTFASLQNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYRAAYKLWKVDKLDFLACVCSFFGVLFISVPLGLGVAVAISVFKILLHVSRPNTSVLGNIPGTPIFHNLNQYKEAIRIPAFIILAVESPIYFANATYLQERILRWVREEEERVVALNGSALKCIILDMTAVTGIDTSGIDTLCELRRRLEQKSLQLVLANPVGNVMEKLHESNILDSFGMKGLYLSVGEAVADISSSWKAQP