AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36287

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36287.t1 MTR_2g102243 99.536 647 3 0 3 649 1 647 0.0 1310
MS.gene36287.t1 MTR_2g102243 98.116 584 11 0 3 586 1 584 0.0 1165
MS.gene36287.t1 MTR_4g011970 82.317 656 107 2 1 649 1 654 0.0 1115
MS.gene36287.t1 MTR_4g084620 63.968 630 222 3 21 648 14 640 0.0 825
MS.gene36287.t1 MTR_4g084640 62.025 632 238 1 18 649 15 644 0.0 806
MS.gene36287.t1 MTR_7g095430 58.347 629 259 1 14 642 10 635 0.0 753
MS.gene36287.t1 MTR_1g071530 57.232 643 275 0 7 649 3 645 0.0 746
MS.gene36287.t1 MTR_5g061880 53.130 655 299 2 3 649 1 655 0.0 713
MS.gene36287.t1 MTR_7g095430 59.220 564 227 1 14 577 10 570 0.0 690
MS.gene36287.t1 MTR_2g008470 55.267 617 274 2 24 639 34 649 0.0 682
MS.gene36287.t1 MTR_2g008470 55.267 617 274 2 24 639 53 668 0.0 682
MS.gene36287.t1 MTR_3g073780 53.185 628 290 3 25 649 33 659 0.0 673
MS.gene36287.t1 MTR_3g073780 54.595 555 248 3 25 576 33 586 0.0 617
MS.gene36287.t1 MTR_6g086170 48.154 623 317 3 17 638 3 620 0.0 614
MS.gene36287.t1 MTR_3g073780 55.408 527 232 2 25 548 33 559 0.0 596
MS.gene36287.t1 MTR_5g061860 47.678 646 325 5 3 638 1 643 0.0 584
MS.gene36287.t1 MTR_3g087740 49.231 585 293 4 58 639 64 647 0.0 577
MS.gene36287.t1 MTR_3g073730 47.871 587 296 4 72 649 75 660 0.0 538
MS.gene36287.t1 MTR_5g061860 48.381 556 275 4 3 548 1 554 8.03e-176 512
MS.gene36287.t1 MTR_3g087730 41.069 655 358 10 13 647 12 658 5.17e-161 478
MS.gene36287.t1 MTR_7g022870 35.467 578 359 7 65 638 66 633 2.50e-115 361
MS.gene36287.t1 MTR_7g022870 37.103 504 304 6 55 557 56 547 1.26e-105 332
MS.gene36287.t1 MTR_6g024420 31.818 132 71 3 227 358 54 166 1.34e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36287.t1 AT3G15990 76.263 653 151 2 1 649 1 653 0.0 1028
MS.gene36287.t1 AT1G23090 64.355 620 220 1 24 642 3 622 0.0 822
MS.gene36287.t1 AT3G51895 58.643 619 255 1 25 642 20 638 0.0 759
MS.gene36287.t1 AT3G51895 58.643 619 255 1 25 642 65 683 0.0 759
MS.gene36287.t1 AT4G02700 56.331 616 268 1 25 639 10 625 0.0 685
MS.gene36287.t1 AT4G08620 53.760 625 287 2 25 648 23 646 0.0 672
MS.gene36287.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene36287.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene36287.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene36287.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene36287.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene36287.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene36287.t1 AT1G78000 56.897 580 249 1 25 603 28 607 0.0 634
MS.gene36287.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene36287.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene36287.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene36287.t1 AT5G19600 47.611 628 318 4 13 638 2 620 0.0 618
MS.gene36287.t1 AT1G78000 57.143 553 236 1 25 576 28 580 0.0 607
MS.gene36287.t1 AT1G22150 54.770 566 254 2 13 576 18 583 0.0 603
MS.gene36287.t1 AT5G10180 47.557 614 316 5 30 638 57 669 0.0 550
MS.gene36287.t1 AT1G77990 48.443 578 287 5 69 638 89 663 0.0 535
MS.gene36287.t1 AT1G78000 57.759 464 195 1 25 487 28 491 3.17e-174 506
MS.gene36287.t1 AT1G78000 57.079 445 190 1 133 576 1 445 8.18e-163 475
MS.gene36287.t1 AT3G12520 34.202 614 382 11 31 638 13 610 2.43e-113 355
MS.gene36287.t1 AT3G12520 34.135 624 388 12 22 638 19 626 3.42e-113 355
MS.gene36287.t1 AT5G13550 35.253 573 353 8 72 638 79 639 1.10e-112 353
MS.gene36287.t1 AT3G12520 34.070 543 344 9 8 548 5 535 2.44e-100 317

Find 126 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGTTCTGATGTCATTTC+TGG 0.070395 2.2:+1657715 MS.gene36287:CDS
GTTACATATGTCGAAAATTT+TGG 0.105448 2.2:+1662526 MS.gene36287:CDS
TTGGATACCTTTGGATTTAA+AGG 0.129404 2.2:+1662545 MS.gene36287:CDS
GCAAACTTGCCTCCTATTAT+TGG 0.172651 2.2:+1658369 MS.gene36287:CDS
AGTTCCTTCATTTCTCATTT+TGG 0.202383 2.2:+1661849 MS.gene36287:CDS
ACCAGTTTCAATTGCATCTT+TGG 0.216974 2.2:+1658548 MS.gene36287:CDS
TGAGGAAACCAAAACTATTC+TGG 0.222148 2.2:+1660279 MS.gene36287:CDS
CAAACTATTGTTATGGGATT+TGG 0.225265 2.2:+1660078 MS.gene36287:CDS
CTGTTCCTTTCTGTACCTTT+AGG 0.241771 2.2:+1661439 MS.gene36287:CDS
TTCAATTGCATCTTTGGTTA+TGG 0.242829 2.2:+1658554 MS.gene36287:CDS
GGTTGACAAACTTGATTTCT+TGG 0.245825 2.2:+1661390 MS.gene36287:CDS
CTTTGTATTGGTTTATGTTA+TGG 0.247148 2.2:-1661816 None:intergenic
TTCACTGCCACCTTTGTTGC+TGG 0.254252 2.2:+1658639 MS.gene36287:CDS
AGTCTTCCTTCTCAGAAATA+AGG 0.295437 2.2:+1660349 MS.gene36287:CDS
CTCTTAAAGCTTCTTTGTAT+TGG 0.307202 2.2:-1661828 None:intergenic
GCTGAAGCCCAGAATAGTTT+TGG 0.328596 2.2:-1660287 None:intergenic
ATCATTATTGCTGCTGTGAT+TGG 0.334479 2.2:+1661331 MS.gene36287:CDS
TCCTACTCTTTATCTTCAAT+TGG 0.334852 2.2:+1658614 MS.gene36287:CDS
GAGGAAACCAAAACTATTCT+GGG 0.356834 2.2:+1660280 MS.gene36287:CDS
TTTCCTAAAACCAAAGTGTT+TGG 0.367277 2.2:-1661772 None:intergenic
GTCATGGCAAACTATTGTTA+TGG 0.367788 2.2:+1660071 MS.gene36287:CDS
AAGGACCATTGAAGTATAAC+AGG 0.367890 2.2:-1660571 None:intergenic
ACAAGTGGGCTTGAAACTTT+AGG 0.372523 2.2:+1662333 MS.gene36287:CDS
GATGCAAATTATTCCTGTAT+TGG 0.373222 2.2:+1659192 MS.gene36287:CDS
AGCAACACTGGTCGGTTTCA+TGG 0.373280 2.2:+1659099 MS.gene36287:CDS
GAAAGAATGACTGATGTTAA+AGG 0.373299 2.2:-1660317 None:intergenic
TCAATTGCATCTTTGGTTAT+GGG 0.374321 2.2:+1658555 MS.gene36287:CDS
AAAATTTGCAACAGAGTTTG+AGG 0.376454 2.2:+1660261 MS.gene36287:intron
CAGCAATTGAAAGGGTTACT+TGG 0.381616 2.2:+1659148 MS.gene36287:CDS
ATACTTCAATGGTCCTTACT+TGG 0.385099 2.2:+1660577 MS.gene36287:CDS
ACCAAAGATGCAATTGAAAC+TGG 0.387670 2.2:-1658549 None:intergenic
TCATGGCAAACTATTGTTAT+GGG 0.396502 2.2:+1660072 MS.gene36287:CDS
TTATGGAATATCTGTGTTCC+AGG 0.397023 2.2:-1661799 None:intergenic
GTCGAATTAGCGAAATAGAT+TGG 0.397884 2.2:-1661883 None:intergenic
GGTAAACGAACTTGATGAAT+TGG 0.398007 2.2:-1657523 None:intergenic
TACCCACACAGTCCAATAAT+AGG 0.405757 2.2:-1658381 None:intergenic
AAACGGTGTAAAGGATCATC+AGG 0.414499 2.2:-1657601 None:intergenic
TTGTTGAATGATGTTCTCTC+TGG 0.416692 2.2:-1657547 None:intergenic
AGAAGAAACTTTGTGAAAGA+TGG 0.416725 2.2:-1657634 None:intergenic
TTGGCTCTTGCTATCAAAAC+AGG 0.418557 2.2:+1660596 MS.gene36287:CDS
GGTTTATTCCAAGCATCTCT+TGG 0.419052 2.2:+1658660 MS.gene36287:CDS
TCTTCGGCAGATTGGGCACT+TGG 0.427078 2.2:+1660520 MS.gene36287:intron
TAAAACCAAAGTGTTTGGTC+TGG 0.436365 2.2:-1661767 None:intergenic
GCTAGAAAAGAGATCACTTC+AGG 0.438400 2.2:+1662371 MS.gene36287:CDS
TGCGGTTTCTAATATAATCA+TGG 0.439032 2.2:+1661234 MS.gene36287:CDS
AGAGAGGCATGAGAAACAAA+AGG 0.448526 2.2:-1661276 None:intergenic
GGTCTCTGTTTACAAGCAAA+AGG 0.455202 2.2:+1659213 MS.gene36287:CDS
TTCTGCATACTGTGAGAGAT+AGG 0.461000 2.2:-1660634 None:intergenic
ATGGTTGCCAAGACTACATT+TGG 0.469754 2.2:-1661310 None:intergenic
AAATGGGGAACAAGAATTGA+AGG 0.470307 2.2:-1657660 None:intergenic
CCTGCTGCAGGATACTAAGA+TGG 0.477618 2.2:+1662014 MS.gene36287:intron
TACCTGAGGAATGGCGAGGC+TGG 0.478704 2.2:-1657749 None:intergenic
CAGATTGGGCACTTGGCAAA+AGG 0.480187 2.2:+1660527 MS.gene36287:intron
CTATACACCAAATGTAGTCT+TGG 0.480440 2.2:+1661303 MS.gene36287:CDS
TGCCAGCCTCGCCATTCCTC+AGG 0.487005 2.2:+1657747 MS.gene36287:CDS
TTGATAGCAAGAGCCAAGTA+AGG 0.495546 2.2:-1660590 None:intergenic
GAAACTTTGTGAAAGATGGT+TGG 0.495720 2.2:-1657630 None:intergenic
GTGAACCTGTTATACTTCAA+TGG 0.496085 2.2:+1660566 MS.gene36287:CDS
TTGAATGATGTTCTCTCTGG+TGG 0.500229 2.2:-1657544 None:intergenic
AAATGACATCAGAACGAAGA+AGG 0.501148 2.2:-1657711 None:intergenic
GTGTCACTACAGCAATTGAA+AGG 0.503444 2.2:+1659139 MS.gene36287:CDS
ACTTCATGCTATGTCACAAC+AGG 0.504420 2.2:+1661086 MS.gene36287:CDS
AAGCATCTCTTGGTATACTA+AGG 0.506883 2.2:+1658670 MS.gene36287:CDS
GTTAACAGCCGACCGAGAAA+AGG 0.511994 2.2:-1661191 None:intergenic
ACAGCCAAAATGAGAAATGA+AGG 0.513960 2.2:-1661853 None:intergenic
TTTGCTACTGCAGCTTGTGC+TGG 0.518208 2.2:+1662475 MS.gene36287:intron
ATTGGTATTATGAACATAGC+TGG 0.521101 2.2:+1661056 MS.gene36287:CDS
ACACTGGTCGGTTTCATGGC+CGG 0.523106 2.2:+1659103 MS.gene36287:CDS
CCATTGATATATGCTCTGCT+TGG 0.532486 2.2:+1658501 MS.gene36287:CDS
ATCAAAACAGGCATTGTCAC+AGG 0.532741 2.2:+1660608 MS.gene36287:CDS
TGTCTCCAGACCAAACACTT+TGG 0.535603 2.2:+1661762 MS.gene36287:CDS
AACAAAGAAATGATGGCCAT+TGG 0.536224 2.2:+1661038 MS.gene36287:CDS
TTAGTATACCAAGAGATGCT+TGG 0.538194 2.2:-1658668 None:intergenic
TCTGAGAAGGAAGACTAAGA+TGG 0.538988 2.2:-1660342 None:intergenic
ACTAAGATGGGTTCGAGAAG+AGG 0.542827 2.2:+1662027 MS.gene36287:CDS
GGATGGTAACAAAGAAATGA+TGG 0.543158 2.2:+1661031 MS.gene36287:CDS
TCGGCTGTTAACTACAATGC+TGG 0.543954 2.2:+1661202 MS.gene36287:CDS
CCAAGCAGAGCATATATCAA+TGG 0.545731 2.2:-1658501 None:intergenic
TTGTAAACAGAGACCAATAC+AGG 0.551560 2.2:-1659205 None:intergenic
CTTGTGCTGGTAAATCCTGT+TGG 0.553364 2.2:+1662488 MS.gene36287:CDS
CTGCTGCAGGATACTAAGAT+GGG 0.556954 2.2:+1662015 MS.gene36287:intron
TGTCACTACAGCAATTGAAA+GGG 0.559159 2.2:+1659140 MS.gene36287:CDS
GATGAGCCTTATTTCTGAGA+AGG 0.561522 2.2:-1660355 None:intergenic
TTTCTTTGTTACCATCCACT+TGG 0.567679 2.2:-1661025 None:intergenic
ACCGCAATACTGAGGCCTAA+AGG 0.567708 2.2:-1661454 None:intergenic
GAGCGTATAAAAGAATATAA+CGG 0.567847 2.2:+1662052 MS.gene36287:CDS
ACCTTTAGGCCTCAGTATTG+CGG 0.573360 2.2:+1661453 MS.gene36287:CDS
AATGACATCAGAACGAAGAA+GGG 0.574823 2.2:-1657710 None:intergenic
ATAGAGTCCTTTAAATCCAA+AGG 0.579814 2.2:-1662552 None:intergenic
CTATCAAAAGCAACACTGGT+CGG 0.581691 2.2:+1659091 MS.gene36287:CDS
AGGAATGGCGAGGCTGGCAA+TGG 0.582040 2.2:-1657743 None:intergenic
GAGAGGCATGAGAAACAAAA+GGG 0.582465 2.2:-1661275 None:intergenic
AGTTCAAGACATGTTGGTGT+TGG 0.584677 2.2:+1658525 MS.gene36287:CDS
TTTCAGGAAGGAATTGCAGT+AGG 0.586893 2.2:+1660975 MS.gene36287:intron
CAATGTGTCTTGTTGTGAGT+AGG 0.589297 2.2:-1660113 None:intergenic
AAATCCTGTTGGAAATGTGA+TGG 0.589817 2.2:+1662499 MS.gene36287:CDS
AAGTATAACAGGTTCACTGA+TGG 0.594442 2.2:-1660560 None:intergenic
AATCACAGCAGCAATAATGA+TGG 0.594477 2.2:-1661329 None:intergenic
TTTCCTATCAAAAGCAACAC+TGG 0.594795 2.2:+1659087 MS.gene36287:CDS
TGTTTACAAGCAAAAGGATG+AGG 0.596601 2.2:+1659219 MS.gene36287:CDS
TGACACAATGATAGCAGCAC+CGG 0.605213 2.2:-1659122 None:intergenic
AAAGGACTCTATCTCACAGT+GGG 0.606820 2.2:+1662563 MS.gene36287:CDS
TATAACAGGTTCACTGATGG+CGG 0.607462 2.2:-1660557 None:intergenic
AGCGGCATATAAACTGTGGA+AGG 0.607621 2.2:+1661369 MS.gene36287:CDS
CTTGGAAGTTCAAGACATGT+TGG 0.608273 2.2:+1658519 MS.gene36287:CDS
AGCTATGTTCATAATACCAA+TGG 0.612229 2.2:-1661054 None:intergenic
TTGGAATAAACCAGCAACAA+AGG 0.616151 2.2:-1658649 None:intergenic
GCCAATTGAAGATAAAGAGT+AGG 0.620777 2.2:-1658615 None:intergenic
TTGGTCTGGAGACATGAAGT+AGG 0.623137 2.2:-1661753 None:intergenic
CCTTCTCTAACCTCTCTCGA+AGG 0.623428 2.2:-1661909 None:intergenic
ATTCGACTTACCTTCGAGAG+AGG 0.627046 2.2:+1661899 MS.gene36287:CDS
CCACACAGTCCAATAATAGG+AGG 0.627903 2.2:-1658378 None:intergenic
TGAGGCCTAAAGGTACAGAA+AGG 0.628258 2.2:-1661444 None:intergenic
AATGGGGAACAAGAATTGAA+GGG 0.630184 2.2:-1657659 None:intergenic
TTCAGCTTACCGCAATACTG+AGG 0.632493 2.2:-1661462 None:intergenic
GTCACAGCAATAGACACAAG+TGG 0.637346 2.2:+1662318 MS.gene36287:CDS
AGCAGAGCATATATCAATGG+TGG 0.637500 2.2:-1658498 None:intergenic
TCACAGCAATAGACACAAGT+GGG 0.640720 2.2:+1662319 MS.gene36287:CDS
ATCAAGCGGCATATAAACTG+TGG 0.658235 2.2:+1661365 MS.gene36287:CDS
TTTGGTGTATAGTAGAAGAG+AGG 0.666763 2.2:-1661292 None:intergenic
GAATAAACCAGCAACAAAGG+TGG 0.668265 2.2:-1658646 None:intergenic
TTTATACCTGAGGAATGGCG+AGG 0.677577 2.2:-1657753 None:intergenic
TGGACTAATAGATTATCAAG+CGG 0.690120 2.2:+1661351 MS.gene36287:CDS
AACGGTGTAAAGGATCATCA+GGG 0.693572 2.2:-1657600 None:intergenic
CAATGCTGGAGCACAGACTG+CGG 0.704420 2.2:+1661216 MS.gene36287:CDS
TAAAGGACTCTATCTCACAG+TGG 0.722085 2.2:+1662562 MS.gene36287:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAATAAAATAAATTAT+GGG + chr2.2:1659375-1659394 MS.gene36287:intron 0.0%
!! TTTATTAATAAAATAAATTA+TGG + chr2.2:1659374-1659393 MS.gene36287:intron 0.0%
!! AAGTTTAAATTTAAATGATT+TGG + chr2.2:1660795-1660814 MS.gene36287:intron 10.0%
!! ATTATTAATATCAATTTACT+TGG + chr2.2:1661694-1661713 MS.gene36287:intron 10.0%
!! ATGAGACAATAAATAATTTA+TGG - chr2.2:1659581-1659600 None:intergenic 15.0%
!! GAAATTTGAGAATTTATTTA+TGG + chr2.2:1658969-1658988 MS.gene36287:intron 15.0%
!! GATTGAATGATTATATAAAA+AGG + chr2.2:1661602-1661621 MS.gene36287:intron 15.0%
!! TATTTATGGTTATTTATTGA+AGG + chr2.2:1658983-1659002 MS.gene36287:intron 15.0%
!! TGAGACAATAAATAATTTAT+GGG - chr2.2:1659580-1659599 None:intergenic 15.0%
!!! ATGCAATATATTTTAAGTTT+AGG - chr2.2:1661650-1661669 None:intergenic 15.0%
!!! GTAATTGTTATTAATTATGA+TGG + chr2.2:1658441-1658460 MS.gene36287:intron 15.0%
!!! TGCAATATATTTTAAGTTTA+GGG - chr2.2:1661649-1661668 None:intergenic 15.0%
!! AAAAATTAGCATAGTAAGAT+TGG + chr2.2:1658767-1658786 MS.gene36287:intron 20.0%
!! AAATAATACTACATGAGATA+CGG - chr2.2:1662202-1662221 None:intergenic 20.0%
!! AATTCAGTCCAAAAAAAAAA+AGG - chr2.2:1658307-1658326 None:intergenic 20.0%
!! ACAAGTTAATGATTCAAATA+GGG - chr2.2:1659532-1659551 None:intergenic 20.0%
!! ATAAATATAGGACAAAACTT+AGG + chr2.2:1660702-1660721 MS.gene36287:intron 20.0%
!! ATGAGAAATGAAGAATATTA+TGG - chr2.2:1659666-1659685 None:intergenic 20.0%
!! CATGTTACATACATAAATAT+AGG + chr2.2:1660690-1660709 MS.gene36287:intron 20.0%
!! TCTCATAAATTCAATTCAAA+TGG + chr2.2:1659595-1659614 MS.gene36287:intron 20.0%
!!! AATGTTATTTGACTTTGATT+TGG + chr2.2:1660203-1660222 MS.gene36287:intron 20.0%
!!! ATTGATATATTGATTTCAGA+AGG + chr2.2:1662405-1662424 MS.gene36287:intron 20.0%
!!! CTAGATTTTGTACTTAAATA+TGG + chr2.2:1660895-1660914 MS.gene36287:intron 20.0%
!!! TATAAAATGTTTTACACTGT+TGG - chr2.2:1661539-1661558 None:intergenic 20.0%
!!! TGAATAATGGTAGATTTTTT+AGG - chr2.2:1662431-1662450 None:intergenic 20.0%
! AACATCTGTGTCAAAAAAAA+AGG - chr2.2:1662176-1662195 None:intergenic 25.0%
! AGAAGTTAGAAAGTGAATAA+TGG - chr2.2:1662444-1662463 None:intergenic 25.0%
! AGCATCACAATATTTAAAAG+TGG - chr2.2:1659991-1660010 None:intergenic 25.0%
! AGTCAGTAAACTAATACATT+TGG - chr2.2:1661508-1661527 None:intergenic 25.0%
! ATATTCCTATGAAAAGATTG+TGG - chr2.2:1659870-1659889 None:intergenic 25.0%
! CACAAGTTAATGATTCAAAT+AGG - chr2.2:1659533-1659552 None:intergenic 25.0%
! GAGCGTATAAAAGAATATAA+CGG + chr2.2:1662052-1662071 MS.gene36287:CDS 25.0%
! GTAAAAAAGTCACATAAGTA+CGG + chr2.2:1658789-1658808 MS.gene36287:intron 25.0%
! TGATATGTGATTAATGTATG+TGG + chr2.2:1662252-1662271 MS.gene36287:intron 25.0%
! TTCATCATTCACAAAACATA+GGG - chr2.2:1659023-1659042 None:intergenic 25.0%
! TTCATTAGACTTACAACATT+TGG + chr2.2:1662118-1662137 MS.gene36287:intron 25.0%
! TTGGTCAAATTAATCAAAAG+TGG + chr2.2:1660473-1660492 MS.gene36287:intron 25.0%
! TTTCATCATTCACAAAACAT+AGG - chr2.2:1659024-1659043 None:intergenic 25.0%
!! CACTTTTGCCTTTTTTTTTT+TGG + chr2.2:1658296-1658315 MS.gene36287:intron 25.0%
!! GTTACATATGTCGAAAATTT+TGG + chr2.2:1662526-1662545 MS.gene36287:CDS 25.0%
!! TATATTGCATGATAATGCTA+TGG + chr2.2:1661660-1661679 MS.gene36287:intron 25.0%
!! TTTCATGAAGAGAGTATAAT+GGG + chr2.2:1659965-1659984 MS.gene36287:intron 25.0%
!!! ATTTCTAGTTTCATGATTTC+TGG + chr2.2:1658412-1658431 MS.gene36287:intron 25.0%
!!! CTTTGTATTGGTTTATGTTA+TGG - chr2.2:1661819-1661838 None:intergenic 25.0%
!!! TTCTAAAATTAAAGCGTGTT+CGG + chr2.2:1658098-1658117 MS.gene36287:intron 25.0%
!!! TTTTACAACTATTTTTGCAG+TGG + chr2.2:1660049-1660068 MS.gene36287:intron 25.0%
AAAATTTGCAACAGAGTTTG+AGG + chr2.2:1660261-1660280 MS.gene36287:intron 30.0%
ACAAAATTTGCCTATGTTTC+AGG + chr2.2:1660959-1660978 MS.gene36287:intron 30.0%
AGAAGAAACTTTGTGAAAGA+TGG - chr2.2:1657637-1657656 None:intergenic 30.0%
AGCACTTAAAAATTACCAAG+TGG + chr2.2:1661010-1661029 MS.gene36287:CDS 30.0%
AGCTATGTTCATAATACCAA+TGG - chr2.2:1661057-1661076 None:intergenic 30.0%
ATAGAGTCCTTTAAATCCAA+AGG - chr2.2:1662555-1662574 None:intergenic 30.0%
ATGCTACAATAAAACCTGAT+TGG - chr2.2:1661569-1661588 None:intergenic 30.0%
ATTGGTATTATGAACATAGC+TGG + chr2.2:1661056-1661075 MS.gene36287:CDS 30.0%
CAAACTATTGTTATGGGATT+TGG + chr2.2:1660078-1660097 MS.gene36287:CDS 30.0%
CTCTTAAAGCTTCTTTGTAT+TGG - chr2.2:1661831-1661850 None:intergenic 30.0%
CTTAAAAATTACCAAGTGGA+TGG + chr2.2:1661014-1661033 MS.gene36287:CDS 30.0%
GAAAGAATGACTGATGTTAA+AGG - chr2.2:1660320-1660339 None:intergenic 30.0%
GATGCAAATTATTCCTGTAT+TGG + chr2.2:1659192-1659211 MS.gene36287:CDS 30.0%
GCTCTTAATCATATGAATCA+TGG - chr2.2:1661990-1662009 None:intergenic 30.0%
TCAATTGCATCTTTGGTTAT+GGG + chr2.2:1658555-1658574 MS.gene36287:CDS 30.0%
TCATGGCAAACTATTGTTAT+GGG + chr2.2:1660072-1660091 MS.gene36287:CDS 30.0%
TCCTACTCTTTATCTTCAAT+TGG + chr2.2:1658614-1658633 MS.gene36287:CDS 30.0%
TCTTAGATAACTAAGTCATG+TGG - chr2.2:1661134-1661153 None:intergenic 30.0%
TGCGGTTTCTAATATAATCA+TGG + chr2.2:1661234-1661253 MS.gene36287:CDS 30.0%
TGGACTAATAGATTATCAAG+CGG + chr2.2:1661351-1661370 MS.gene36287:CDS 30.0%
TTCAATTGCATCTTTGGTTA+TGG + chr2.2:1658554-1658573 MS.gene36287:CDS 30.0%
TTGGATACCTTTGGATTTAA+AGG + chr2.2:1662545-1662564 MS.gene36287:CDS 30.0%
TTGTCTCTTGATATATTGCA+GGG + chr2.2:1658327-1658346 MS.gene36287:intron 30.0%
TTTGTCTCTTGATATATTGC+AGG + chr2.2:1658326-1658345 MS.gene36287:intron 30.0%
! AGTTCCTTCATTTCTCATTT+TGG + chr2.2:1661849-1661868 MS.gene36287:CDS 30.0%
! ATATAGCAACCTGAAGATTT+TGG - chr2.2:1661720-1661739 None:intergenic 30.0%
! CTTTAAGAATGCTTGGAAAT+TGG + chr2.2:1659269-1659288 MS.gene36287:intron 30.0%
! CTTTCATGAAGAGAGTATAA+TGG + chr2.2:1659964-1659983 MS.gene36287:intron 30.0%
! GATTGATTCTGTGTATTCTT+CGG + chr2.2:1660504-1660523 MS.gene36287:intron 30.0%
! GCATGAACATTTGATAACTT+AGG + chr2.2:1658833-1658852 MS.gene36287:intron 30.0%
! TCGAAAATTTTGGATACCTT+TGG + chr2.2:1662536-1662555 MS.gene36287:CDS 30.0%
! TCTTAAAGTGCTAAACTACA+TGG - chr2.2:1659257-1659276 None:intergenic 30.0%
! TCTTTTGAATTTGTGTATGC+AGG + chr2.2:1659047-1659066 MS.gene36287:intron 30.0%
! TGCATAATTTTAGACATGAC+AGG + chr2.2:1662088-1662107 MS.gene36287:CDS 30.0%
! TTTAGCACTTTAAGAATGCT+TGG + chr2.2:1659262-1659281 MS.gene36287:intron 30.0%
! TTTCCTAAAACCAAAGTGTT+TGG - chr2.2:1661775-1661794 None:intergenic 30.0%
! TTTTATACAGTCATCCAATC+AGG + chr2.2:1661552-1661571 MS.gene36287:intron 30.0%
!! AATCATTAACTTGTGCCTTT+AGG + chr2.2:1659538-1659557 MS.gene36287:intron 30.0%
!! ATCATTAACTTGTGCCTTTA+GGG + chr2.2:1659539-1659558 MS.gene36287:intron 30.0%
!! CAGAAAAGTGTAACAAGTTT+TGG - chr2.2:1660660-1660679 None:intergenic 30.0%
!!! AAGATGGTTGGTTTTTGAAA+CGG - chr2.2:1657621-1657640 None:intergenic 30.0%
AAACACGACACTAACATCAA+TGG - chr2.2:1657939-1657958 None:intergenic 35.0%
AAATCCTGTTGGAAATGTGA+TGG + chr2.2:1662499-1662518 MS.gene36287:CDS 35.0%
AAATGACATCAGAACGAAGA+AGG - chr2.2:1657714-1657733 None:intergenic 35.0%
AAATGGGGAACAAGAATTGA+AGG - chr2.2:1657663-1657682 None:intergenic 35.0%
AACAAAGAAATGATGGCCAT+TGG + chr2.2:1661038-1661057 MS.gene36287:CDS 35.0%
AAGCATCTCTTGGTATACTA+AGG + chr2.2:1658670-1658689 MS.gene36287:CDS 35.0%
AAGGAACAGAACACCAAAAA+AGG - chr2.2:1661428-1661447 None:intergenic 35.0%
AAGGACCATTGAAGTATAAC+AGG - chr2.2:1660574-1660593 None:intergenic 35.0%
AAGTATAACAGGTTCACTGA+TGG - chr2.2:1660563-1660582 None:intergenic 35.0%
AATCACAGCAGCAATAATGA+TGG - chr2.2:1661332-1661351 None:intergenic 35.0%
AATGACATCAGAACGAAGAA+GGG - chr2.2:1657713-1657732 None:intergenic 35.0%
AATGGGGAACAAGAATTGAA+GGG - chr2.2:1657662-1657681 None:intergenic 35.0%
AATTTGCCTATGTTTCAGGA+AGG + chr2.2:1660963-1660982 MS.gene36287:intron 35.0%
ACAGAACAAGTAGTACCTAT+AGG - chr2.2:1660734-1660753 None:intergenic 35.0%
ACAGCCAAAATGAGAAATGA+AGG - chr2.2:1661856-1661875 None:intergenic 35.0%
ACCAAAGATGCAATTGAAAC+TGG - chr2.2:1658552-1658571 None:intergenic 35.0%
ACCAGTTTCAATTGCATCTT+TGG + chr2.2:1658548-1658567 MS.gene36287:CDS 35.0%
ACCGCGTGATAAATTATAAC+CGG - chr2.2:1660760-1660779 None:intergenic 35.0%
ACCGGTTATAATTTATCACG+CGG + chr2.2:1660756-1660775 MS.gene36287:intron 35.0%
AGTCTTCCTTCTCAGAAATA+AGG + chr2.2:1660349-1660368 MS.gene36287:CDS 35.0%
AGTGAAATCACAAACACATG+CGG - chr2.2:1658864-1658883 None:intergenic 35.0%
ATACTTCAATGGTCCTTACT+TGG + chr2.2:1660577-1660596 MS.gene36287:CDS 35.0%
ATCATTATTGCTGCTGTGAT+TGG + chr2.2:1661331-1661350 MS.gene36287:CDS 35.0%
ATCCTTCACTTAGCAATCAT+GGG - chr2.2:1659920-1659939 None:intergenic 35.0%
ATTGATGTTAGTGTCGTGTT+TGG + chr2.2:1657938-1657957 MS.gene36287:intron 35.0%
ATTTCTTAACATGTGCCCTA+AGG - chr2.2:1659417-1659436 None:intergenic 35.0%
CTATACACCAAATGTAGTCT+TGG + chr2.2:1661303-1661322 MS.gene36287:CDS 35.0%
GAAACTTTGTGAAAGATGGT+TGG - chr2.2:1657633-1657652 None:intergenic 35.0%
GAGGAAACCAAAACTATTCT+GGG + chr2.2:1660280-1660299 MS.gene36287:CDS 35.0%
GCCAATTGAAGATAAAGAGT+AGG - chr2.2:1658618-1658637 None:intergenic 35.0%
GGATGGTAACAAAGAAATGA+TGG + chr2.2:1661031-1661050 MS.gene36287:CDS 35.0%
GGTAAACGAACTTGATGAAT+TGG - chr2.2:1657526-1657545 None:intergenic 35.0%
GGTTGACAAACTTGATTTCT+TGG + chr2.2:1661390-1661409 MS.gene36287:CDS 35.0%
GTCATGGCAAACTATTGTTA+TGG + chr2.2:1660071-1660090 MS.gene36287:CDS 35.0%
GTCGAATTAGCGAAATAGAT+TGG - chr2.2:1661886-1661905 None:intergenic 35.0%
GTGAACCTGTTATACTTCAA+TGG + chr2.2:1660566-1660585 MS.gene36287:CDS 35.0%
TCATTTCTCATTGTTGTGTG+TGG + chr2.2:1659675-1659694 MS.gene36287:intron 35.0%
TCCTATGAAAAGATTGTGGT+GGG - chr2.2:1659866-1659885 None:intergenic 35.0%
TGAATTTGTGTATGCAGGTT+AGG + chr2.2:1659052-1659071 MS.gene36287:intron 35.0%
TGAGAACCCCATTGAAAAAT+GGG - chr2.2:1657679-1657698 None:intergenic 35.0%
TGAGGAAACCAAAACTATTC+TGG + chr2.2:1660279-1660298 MS.gene36287:CDS 35.0%
TGTCACTACAGCAATTGAAA+GGG + chr2.2:1659140-1659159 MS.gene36287:CDS 35.0%
TGTTTACAAGCAAAAGGATG+AGG + chr2.2:1659219-1659238 MS.gene36287:CDS 35.0%
TTAGTATACCAAGAGATGCT+TGG - chr2.2:1658671-1658690 None:intergenic 35.0%
TTATGGAATATCTGTGTTCC+AGG - chr2.2:1661802-1661821 None:intergenic 35.0%
TTCCTATGAAAAGATTGTGG+TGG - chr2.2:1659867-1659886 None:intergenic 35.0%
TTGGAATAAACCAGCAACAA+AGG - chr2.2:1658652-1658671 None:intergenic 35.0%
TTGTAAACAGAGACCAATAC+AGG - chr2.2:1659208-1659227 None:intergenic 35.0%
TTGTTGAATGATGTTCTCTC+TGG - chr2.2:1657550-1657569 None:intergenic 35.0%
TTTACTTGGCCAAAATCTTC+AGG + chr2.2:1661708-1661727 MS.gene36287:intron 35.0%
TTTCCTATCAAAAGCAACAC+TGG + chr2.2:1659087-1659106 MS.gene36287:CDS 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr2.2:1659416-1659435 None:intergenic 35.0%
TTTCTTTGTTACCATCCACT+TGG - chr2.2:1661028-1661047 None:intergenic 35.0%
! AAACTTAGGTGTTGTCCTAT+AGG + chr2.2:1660716-1660735 MS.gene36287:intron 35.0%
! GTTAGTGTGTTTTATACCTG+AGG - chr2.2:1657766-1657785 None:intergenic 35.0%
! TAAAACCAAAGTGTTTGGTC+TGG - chr2.2:1661770-1661789 None:intergenic 35.0%
! TGTGTTTTATACCTGAGGAA+TGG - chr2.2:1657761-1657780 None:intergenic 35.0%
! TTTGGTGTATAGTAGAAGAG+AGG - chr2.2:1661295-1661314 None:intergenic 35.0%
! TTTTCCATCACATTTCCAAC+AGG - chr2.2:1662506-1662525 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTAA+AGG - chr2.2:1659556-1659575 None:intergenic 35.0%
!! CTTGTTCCCCATTTTTCAAT+GGG + chr2.2:1657669-1657688 MS.gene36287:CDS 35.0%
!! TCTTGTTCCCCATTTTTCAA+TGG + chr2.2:1657668-1657687 MS.gene36287:CDS 35.0%
!! TTGTTCCCCATTTTTCAATG+GGG + chr2.2:1657670-1657689 MS.gene36287:CDS 35.0%
!!! AACTATTTTTGCAGTGGTCA+TGG + chr2.2:1660055-1660074 MS.gene36287:intron 35.0%
!!! AGACCAAACACTTTGGTTTT+AGG + chr2.2:1661769-1661788 MS.gene36287:CDS 35.0%
!!! TGGTTTTTGAAACGGTGTAA+AGG - chr2.2:1657613-1657632 None:intergenic 35.0%
!!! TGTTATGGGATTTGGCTTTT+TGG + chr2.2:1660086-1660105 MS.gene36287:CDS 35.0%
!!! TTGGTTTTAGGAAACATACC+TGG + chr2.2:1661781-1661800 MS.gene36287:CDS 35.0%
AAACGGTGTAAAGGATCATC+AGG - chr2.2:1657604-1657623 None:intergenic 40.0%
AAAGGACTCTATCTCACAGT+GGG + chr2.2:1662563-1662582 MS.gene36287:CDS 40.0%
AACGGTGTAAAGGATCATCA+GGG - chr2.2:1657603-1657622 None:intergenic 40.0%
ACACTATGCAAGACTAACAC+CGG - chr2.2:1657966-1657985 None:intergenic 40.0%
ACTTCATGCTATGTCACAAC+AGG + chr2.2:1661086-1661105 MS.gene36287:CDS 40.0%
AGCAGAGCATATATCAATGG+TGG - chr2.2:1658501-1658520 None:intergenic 40.0%
AGTTCAAGACATGTTGGTGT+TGG + chr2.2:1658525-1658544 MS.gene36287:CDS 40.0%
ATCAAGCGGCATATAAACTG+TGG + chr2.2:1661365-1661384 MS.gene36287:CDS 40.0%
ATGGTTGCCAAGACTACATT+TGG - chr2.2:1661313-1661332 None:intergenic 40.0%
CAGCAATTGAAAGGGTTACT+TGG + chr2.2:1659148-1659167 MS.gene36287:CDS 40.0%
CATAAGTACGGTCTGACATA+TGG + chr2.2:1658801-1658820 MS.gene36287:intron 40.0%
CATCCTTCACTTAGCAATCA+TGG - chr2.2:1659921-1659940 None:intergenic 40.0%
CATGATTGCTAAGTGAAGGA+TGG + chr2.2:1659919-1659938 MS.gene36287:intron 40.0%
CCAAGCAGAGCATATATCAA+TGG - chr2.2:1658504-1658523 None:intergenic 40.0%
CCATTGATATATGCTCTGCT+TGG + chr2.2:1658501-1658520 MS.gene36287:CDS 40.0%
CTATCAAAAGCAACACTGGT+CGG + chr2.2:1659091-1659110 MS.gene36287:CDS 40.0%
CTCCTATTATTGGACTGTGT+GGG + chr2.2:1658379-1658398 MS.gene36287:intron 40.0%
CTGAGAACCCCATTGAAAAA+TGG - chr2.2:1657680-1657699 None:intergenic 40.0%
CTGTTCCTTTCTGTACCTTT+AGG + chr2.2:1661439-1661458 MS.gene36287:CDS 40.0%
CTTGGAAGTTCAAGACATGT+TGG + chr2.2:1658519-1658538 MS.gene36287:CDS 40.0%
GAATAAACCAGCAACAAAGG+TGG - chr2.2:1658649-1658668 None:intergenic 40.0%
GAATATAGTCGCGCATTTCT+CGG - chr2.2:1658066-1658085 None:intergenic 40.0%
GAGAAAGTCTACATTCTTGC+AGG + chr2.2:1661166-1661185 MS.gene36287:intron 40.0%
GAGAACCCCATTGAAAAATG+GGG - chr2.2:1657678-1657697 None:intergenic 40.0%
GCAAACTTGCCTCCTATTAT+TGG + chr2.2:1658369-1658388 MS.gene36287:CDS 40.0%
GCAATTCCTTCCTGAAACAT+AGG - chr2.2:1660972-1660991 None:intergenic 40.0%
GCTAGAAAAGAGATCACTTC+AGG + chr2.2:1662371-1662390 MS.gene36287:CDS 40.0%
GGTCTCTGTTTACAAGCAAA+AGG + chr2.2:1659213-1659232 MS.gene36287:CDS 40.0%
GGTTTATTCCAAGCATCTCT+TGG + chr2.2:1658660-1658679 MS.gene36287:CDS 40.0%
GTACTACTTGTTCTGTTCAC+CGG + chr2.2:1660738-1660757 MS.gene36287:intron 40.0%
TAAAGGACTCTATCTCACAG+TGG + chr2.2:1662562-1662581 MS.gene36287:CDS 40.0%
TACCCACACAGTCCAATAAT+AGG - chr2.2:1658384-1658403 None:intergenic 40.0%
TATAACAGGTTCACTGATGG+CGG - chr2.2:1660560-1660579 None:intergenic 40.0%
TATGGATTCGAATTGCGTTC+AGG - chr2.2:1659648-1659667 None:intergenic 40.0%
TCACAGCAATAGACACAAGT+GGG + chr2.2:1662319-1662338 MS.gene36287:CDS 40.0%
TCCTTCACTTAGCAATCATG+GGG - chr2.2:1659919-1659938 None:intergenic 40.0%
TCTGAGAAGGAAGACTAAGA+TGG - chr2.2:1660345-1660364 None:intergenic 40.0%
TGTGTATTCTTCGGCAGATT+GGG + chr2.2:1660513-1660532 MS.gene36287:intron 40.0%
TTCTGCATACTGTGAGAGAT+AGG - chr2.2:1660637-1660656 None:intergenic 40.0%
TTGAATGATGTTCTCTCTGG+TGG - chr2.2:1657547-1657566 None:intergenic 40.0%
TTTCAGGAAGGAATTGCAGT+AGG + chr2.2:1660975-1660994 MS.gene36287:intron 40.0%
! ACAAGTGGGCTTGAAACTTT+AGG + chr2.2:1662333-1662352 MS.gene36287:CDS 40.0%
! AGAGAGGCATGAGAAACAAA+AGG - chr2.2:1661279-1661298 None:intergenic 40.0%
! AGTGTAACCACGTGTTTTGT+CGG - chr2.2:1657892-1657911 None:intergenic 40.0%
! ATCAAAACAGGCATTGTCAC+AGG + chr2.2:1660608-1660627 MS.gene36287:CDS 40.0%
! CAATGTGTCTTGTTGTGAGT+AGG - chr2.2:1660116-1660135 None:intergenic 40.0%
! CATGATAATGCTATGGCATG+TGG + chr2.2:1661667-1661686 MS.gene36287:intron 40.0%
! CTTCGTTCTGATGTCATTTC+TGG + chr2.2:1657715-1657734 MS.gene36287:CDS 40.0%
! GAGAGGCATGAGAAACAAAA+GGG - chr2.2:1661278-1661297 None:intergenic 40.0%
! GTGTCACTACAGCAATTGAA+AGG + chr2.2:1659139-1659158 MS.gene36287:CDS 40.0%
! TCCCACCACAATCTTTTCAT+AGG + chr2.2:1659862-1659881 MS.gene36287:intron 40.0%
! TTCTTGCAGGATCCTTTTCT+CGG + chr2.2:1661179-1661198 MS.gene36287:intron 40.0%
! TTGATAGCAAGAGCCAAGTA+AGG - chr2.2:1660593-1660612 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+AGG + chr2.2:1660596-1660615 MS.gene36287:CDS 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG + chr2.2:1659399-1659418 MS.gene36287:intron 40.0%
!! GATGAGCCTTATTTCTGAGA+AGG - chr2.2:1660358-1660377 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG + chr2.2:1659398-1659417 MS.gene36287:intron 40.0%
ACCCCATGATTGCTAAGTGA+AGG + chr2.2:1659915-1659934 MS.gene36287:intron 45.0%
ACCTTTAGGCCTCAGTATTG+CGG + chr2.2:1661453-1661472 MS.gene36287:CDS 45.0%
AGCGGCATATAAACTGTGGA+AGG + chr2.2:1661369-1661388 MS.gene36287:CDS 45.0%
AGTCGTATGTCTCAAGTGTC+AGG - chr2.2:1657833-1657852 None:intergenic 45.0%
ATTCGACTTACCTTCGAGAG+AGG + chr2.2:1661899-1661918 MS.gene36287:CDS 45.0%
CATGTCTCACTGATAGACAC+CGG - chr2.2:1658127-1658146 None:intergenic 45.0%
CCACACAGTCCAATAATAGG+AGG - chr2.2:1658381-1658400 None:intergenic 45.0%
CCTCCTATTATTGGACTGTG+TGG + chr2.2:1658378-1658397 MS.gene36287:intron 45.0%
CTAATGTCCGACAAAACACG+TGG + chr2.2:1657882-1657901 MS.gene36287:intron 45.0%
CTGCTGCAGGATACTAAGAT+GGG + chr2.2:1662015-1662034 MS.gene36287:intron 45.0%
CTGTGTATTCTTCGGCAGAT+TGG + chr2.2:1660512-1660531 MS.gene36287:intron 45.0%
CTTCGTATTGAAGACGTGTC+TGG + chr2.2:1657805-1657824 MS.gene36287:intron 45.0%
GTCACAGCAATAGACACAAG+TGG + chr2.2:1662318-1662337 MS.gene36287:CDS 45.0%
TCGGCTGTTAACTACAATGC+TGG + chr2.2:1661202-1661221 MS.gene36287:CDS 45.0%
TGACACAATGATAGCAGCAC+CGG - chr2.2:1659125-1659144 None:intergenic 45.0%
TGTCTCCAGACCAAACACTT+TGG + chr2.2:1661762-1661781 MS.gene36287:CDS 45.0%
TTAGCAATCATGGGGTGCAA+GGG - chr2.2:1659911-1659930 None:intergenic 45.0%
TTATTACCGTCGTGTCTGTC+AGG + chr2.2:1658178-1658197 MS.gene36287:intron 45.0%
TTCAGCTTACCGCAATACTG+AGG - chr2.2:1661465-1661484 None:intergenic 45.0%
TTTATACCTGAGGAATGGCG+AGG - chr2.2:1657756-1657775 None:intergenic 45.0%
! ACCAAAAAAGGAGCACATGC+AGG - chr2.2:1661416-1661435 None:intergenic 45.0%
! ACTAAGATGGGTTCGAGAAG+AGG + chr2.2:1662027-1662046 MS.gene36287:CDS 45.0%
! CTTGTGCTGGTAAATCCTGT+TGG + chr2.2:1662488-1662507 MS.gene36287:CDS 45.0%
! GCTGAAGCCCAGAATAGTTT+TGG - chr2.2:1660290-1660309 None:intergenic 45.0%
! TGAGGCCTAAAGGTACAGAA+AGG - chr2.2:1661447-1661466 None:intergenic 45.0%
!! ATTAAAGCGTGTTCGGTGTC+CGG + chr2.2:1658105-1658124 MS.gene36287:intron 45.0%
!!! CGACCAGTGTTGCTTTTGAT+AGG - chr2.2:1659093-1659112 None:intergenic 45.0%
!! TATAAAAAAAATTGAAATAT+TGG + chr2.2:1660454-1660473 MS.gene36287:intron 5.0%
ACCGCAATACTGAGGCCTAA+AGG - chr2.2:1661457-1661476 None:intergenic 50.0%
CAAACACCTGACAGACACGA+CGG - chr2.2:1658187-1658206 None:intergenic 50.0%
CAGATTGGGCACTTGGCAAA+AGG + chr2.2:1660527-1660546 MS.gene36287:intron 50.0%
CCATCTTAGTATCCTGCAGC+AGG - chr2.2:1662017-1662036 None:intergenic 50.0%
CCTGCTGCAGGATACTAAGA+TGG + chr2.2:1662014-1662033 MS.gene36287:intron 50.0%
CCTTCGAGAGAGGTTAGAGA+AGG + chr2.2:1661909-1661928 MS.gene36287:intron 50.0%
CCTTCTCTAACCTCTCTCGA+AGG - chr2.2:1661912-1661931 None:intergenic 50.0%
CTTAGCAATCATGGGGTGCA+AGG - chr2.2:1659912-1659931 None:intergenic 50.0%
GTTAACAGCCGACCGAGAAA+AGG - chr2.2:1661194-1661213 None:intergenic 50.0%
TTAAGAGCTTCTCCTGCTGC+AGG + chr2.2:1662002-1662021 MS.gene36287:intron 50.0%
TTCACTGCCACCTTTGTTGC+TGG + chr2.2:1658639-1658658 MS.gene36287:CDS 50.0%
TTTGCTACTGCAGCTTGTGC+TGG + chr2.2:1662475-1662494 MS.gene36287:intron 50.0%
! AGCAACACTGGTCGGTTTCA+TGG + chr2.2:1659099-1659118 MS.gene36287:CDS 50.0%
! TGCAGGATCCTTTTCTCGGT+CGG + chr2.2:1661183-1661202 MS.gene36287:intron 50.0%
!! GTTAGTGTCGTGTTTGGTGC+CGG + chr2.2:1657944-1657963 MS.gene36287:intron 50.0%
!!! GCCTGCATGTGCTCCTTTTT+TGG + chr2.2:1661412-1661431 MS.gene36287:CDS 50.0%
CAATGCTGGAGCACAGACTG+CGG + chr2.2:1661216-1661235 MS.gene36287:CDS 55.0%
TCTTCGGCAGATTGGGCACT+TGG + chr2.2:1660520-1660539 MS.gene36287:intron 55.0%
! ACACTGGTCGGTTTCATGGC+CGG + chr2.2:1659103-1659122 MS.gene36287:CDS 55.0%
AGGAATGGCGAGGCTGGCAA+TGG - chr2.2:1657746-1657765 None:intergenic 60.0%
TACCTGAGGAATGGCGAGGC+TGG - chr2.2:1657752-1657771 None:intergenic 60.0%
TGCCAGCCTCGCCATTCCTC+AGG + chr2.2:1657747-1657766 MS.gene36287:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1657457 1662631 1657457 ID=MS.gene36287
chr2.2 mRNA 1657457 1662631 1657457 ID=MS.gene36287.t1;Parent=MS.gene36287
chr2.2 exon 1657457 1657768 1657457 ID=MS.gene36287.t1.exon1;Parent=MS.gene36287.t1
chr2.2 CDS 1657457 1657768 1657457 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1658348 1658396 1658348 ID=MS.gene36287.t1.exon2;Parent=MS.gene36287.t1
chr2.2 CDS 1658348 1658396 1658348 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1658484 1658691 1658484 ID=MS.gene36287.t1.exon3;Parent=MS.gene36287.t1
chr2.2 CDS 1658484 1658691 1658484 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1659069 1659240 1659069 ID=MS.gene36287.t1.exon4;Parent=MS.gene36287.t1
chr2.2 CDS 1659069 1659240 1659069 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1660069 1660134 1660069 ID=MS.gene36287.t1.exon5;Parent=MS.gene36287.t1
chr2.2 CDS 1660069 1660134 1660069 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1660275 1660388 1660275 ID=MS.gene36287.t1.exon6;Parent=MS.gene36287.t1
chr2.2 CDS 1660275 1660388 1660275 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1660530 1660646 1660530 ID=MS.gene36287.t1.exon7;Parent=MS.gene36287.t1
chr2.2 CDS 1660530 1660646 1660530 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1660981 1661107 1660981 ID=MS.gene36287.t1.exon8;Parent=MS.gene36287.t1
chr2.2 CDS 1660981 1661107 1660981 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1661188 1661474 1661188 ID=MS.gene36287.t1.exon9;Parent=MS.gene36287.t1
chr2.2 CDS 1661188 1661474 1661188 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1661730 1661920 1661730 ID=MS.gene36287.t1.exon10;Parent=MS.gene36287.t1
chr2.2 CDS 1661730 1661920 1661730 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1662024 1662109 1662024 ID=MS.gene36287.t1.exon11;Parent=MS.gene36287.t1
chr2.2 CDS 1662024 1662109 1662024 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1662316 1662392 1662316 ID=MS.gene36287.t1.exon12;Parent=MS.gene36287.t1
chr2.2 CDS 1662316 1662392 1662316 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
chr2.2 exon 1662488 1662631 1662488 ID=MS.gene36287.t1.exon13;Parent=MS.gene36287.t1
chr2.2 CDS 1662488 1662631 1662488 ID=cds.MS.gene36287.t1;Parent=MS.gene36287.t1
Gene Sequence

>MS.gene36287

ATGGGTATGAACTGCAACAGAGTAGAACACTTTGAAGAAACAACAATGAAAATTCAAACAGAAATTCCAATTCATCAAGTTCGTTTACCACCAGAGAGAACATCATTCAACAAACTCAAACACAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCATCTTTCACAAAGTTTCTTCTTACCCTTCAATTCTTGTTCCCCATTTTTCAATGGGGTTCTCAGTATACTCTCACCCTTCTTCGTTCTGATGTCATTTCTGGTCTCACCATTGCCAGCCTCGCCATTCCTCAGGTATAAAACACACTAACTTCTTACATGTCTCTCATACTTCGTATTGAAGACGTGTCTGGTGCCTGACACTTGAGACATACGACTATATTCAATTATTTCATTTTGTGACGTATCTAATGTCCGACAAAACACGTGGTTACACTCAATTATTTTAATTTATGAAATTACCATTGATGTTAGTGTCGTGTTTGGTGCCGGTGTTAGTCTTGCATAGTGTCGCACTTATTTTTTCATGTCATTATACACATGTTTGTATTTCATCATAAAGATTGAAGACGTGTCTAGTATCTGACACCGAGAAATGCGCGACTATATTCAATTATCTCATTTTCTAAAATTAAAGCGTGTTCGGTGTCCGGTGTCTATCAGTGAGACATGTGATGACATTCAATAATTTCATTTTCTGAAATTATTACCGTCGTGTCTGTCAGGTGTTTGTGTTAGTGTTTCATAGTGTCTCAGTTTTTTGTTATTTTTTTTATATATATCATCATGCATACTTATATTTATATAATATATTTATGTTTCACTTTTGCCTTTTTTTTTTTGGACTGAATTTTGTCTCTTGATATATTGCAGGGAATTAGCTATGCAAAGCTTGCAAACTTGCCTCCTATTATTGGACTGTGTGGGTATTTAATTTATTTCTAGTTTCATGATTTCTGGCATTGAGTAATTGTTATTAATTATGATGGAACATTTGAATATGACACAGATTCAAGTTTTGTGCCACCATTGATATATGCTCTGCTTGGAAGTTCAAGACATGTTGGTGTTGGACCAGTTTCAATTGCATCTTTGGTTATGGGATCAATGTTGAGTGAAACTGTTTCTTTCACTCAAAATCCTACTCTTTATCTTCAATTGGCTTTCACTGCCACCTTTGTTGCTGGTTTATTCCAAGCATCTCTTGGTATACTAAGGTATTCAATTAAACAAAATCATTCATCTTCTGATTTTTATTTTTATTTTACTCTTGCATGTGAAATTAGTTAGTTAAAAATTAGCATAGTAAGATTGGTAAAAAAGTCACATAAGTACGGTCTGACATATGGTAAAAGATTGCATGAACATTTGATAACTTAGGACTCTCCGCATGTGTTTGTGATTTCACTACTAGACTCTTCTGAAAAAAGAAAAAAAAAATCAAAAACTTGTTACTAGTACTTTATTTAATAATAAGACAATTCTAGTCAACTTGAAATTTGAGAATTTATTTATGGTTATTTATTGAAGGACATTTTATTAGTTCCCTATGTTTTGTGAATGATGAAATAATCTTTTGAATTTGTGTATGCAGGTTAGGCTTTGTAATTGATTTCCTATCAAAAGCAACACTGGTCGGTTTCATGGCCGGTGCTGCTATCATTGTGTCACTACAGCAATTGAAAGGGTTACTTGGAATTGTGCACTTTACTAACAAGATGCAAATTATTCCTGTATTGGTCTCTGTTTACAAGCAAAAGGATGAGGTACAGAACACTACCATGTAGTTTAGCACTTTAAGAATGCTTGGAAATTGGAAACAAATTTTTGCATATTGTTTTTTAGTCATTTTCTAAAATTAAATTTATATATTTTTTTGTATATTAAGTAATTTGAACTTTTATTAATAAAATAAATTATGGGTAGTGTTAACTTGTGCCCTTAGGGCACATGTTAAGAAATCTAAATGAAGAAATATTCTATAAAAGTTTGTGCATTTAATTGATTAAAAAGTTAAAGATTAAATTAAATACACACATCTCAATAAATTATTTCCCTATTTGAATCATTAACTTGTGCCTTTAGGGCACAAGTTAACATTTCCCATAAATTATTTATTGTCTCATAAATTCAATTCAAATGGTAAAAAGCTACATAGATATTTGATATGCCTGAACGCAATTCGAATCCATAATATTCTTCATTTCTCATTGTTGTGTGTGGAAGTTTCACATGTATGCTCTTTAGAACTAAATAAAAAAAAATACTTACAAATGTATGACACAATGTAATTTGATGTACAAATTATTTATTTATTTTTGTAACTAATAGTAACAAACATTAAAATTGATTTCTAAATTAAGTAATTTCTATTTTTCTCTTACGATTCCCACCACAATCTTTTCATAGGAATATATAGATAGATTATCATTGCCCTTGCACCCCATGATTGCTAAGTGAAGGATGGCTATTTTTTTCATATATGCTTTCTTTCATGAAGAGAGTATAATGGGCCACTTTTAAATATTGTGATGCTAGTGCAAGTGTAAATACTTGTGAAGTTGACTAAAGTTCTTTTACAACTATTTTTGCAGTGGTCATGGCAAACTATTGTTATGGGATTTGGCTTTTTGGCATTCCTACTCACAACAAGACACATTGTAAATTTCTCTATCTTGCATTATTTAAAACATAGAACTATATCTTATATAGTATAATATATCAGTCTAATGTTATTTGACTTTGATTTGGCTATTCATTTATTTTTCAAGTTCTAATTATTCTTGAAAATTTGCAACAGAGTTTGAGGAAACCAAAACTATTCTGGGCTTCAGCAGCTGCTCCTTTAACATCAGTCATTCTTTCAACCATCTTAGTCTTCCTTCTCAGAAATAAGGCTCATCACATTTCAGTTGTAAGAATTTTACTTACTTCATCATTACTATTTTGAGTGTATGACAAGTAGTATCAATTTAATAATATAAAAAAAATTGAAATATTGGTCAAATTAATCAAAAGTGGTAATAACTGATTGATTCTGTGTATTCTTCGGCAGATTGGGCACTTGGCAAAAGGCGTTAATCCGCCATCAGTGAACCTGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACAGGCATTGTCACAGGAATCCTATCTCTCACAGTATGCAGAACCAAAACTTGTTACACTTTTCTGTCACATACTACATGTTACATACATAAATATAGGACAAAACTTAGGTGTTGTCCTATAGGTACTACTTGTTCTGTTCACCGGTTATAATTTATCACGCGGTTATAATTTTTCAATTAAGTTTAAATTTAAATGATTTGGTTTATCTTATTTGATACACAATGTATACAGTGTATTGTGATTAGAGAACAATAAAAACAGCACACAAAGAGATGCATCTAGATTTTGTACTTAAATATGGCACATGATGCTGTTTTACTTAACTGTGACTTACTCTATTCAACAAAATTTGCCTATGTTTCAGGAAGGAATTGCAGTAGGTAGAACATTTGCAGCACTTAAAAATTACCAAGTGGATGGTAACAAAGAAATGATGGCCATTGGTATTATGAACATAGCTGGCTCTTGTACTTCATGCTATGTCACAACAGGTAATAACTCTTCTTTTATTTATCCACATGACTTAGTTATCTAAGAAGCATCAATTTTGAGAAAGTCTACATTCTTGCAGGATCCTTTTCTCGGTCGGCTGTTAACTACAATGCTGGAGCACAGACTGCGGTTTCTAATATAATCATGGCTTCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCTCTCTTCTACTATACACCAAATGTAGTCTTGGCAACCATCATTATTGCTGCTGTGATTGGACTAATAGATTATCAAGCGGCATATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTTGGTGTTCTGTTCCTTTCTGTACCTTTAGGCCTCAGTATTGCGGTAAGCTGAAAATTTGTTTATCTTGCAAATCCAAATGTATTAGTTTACTGACTATGATGCTCCAACAGTGTAAAACATTTTATACAGTCATCCAATCAGGTTTTATTGTAGCATTATGATGAAACTTGATTGAATGATTATATAAAAAGGTTTACACTGTCAGTGTATAGTCCCTAAACTTAAAATATATTGCATGATAATGCTATGGCATGTGGATACATTATTAATATCAATTTACTTGGCCAAAATCTTCAGGTTGCTATATCAGTCTTCAAGATCCTACTTCATGTCTCCAGACCAAACACTTTGGTTTTAGGAAACATACCTGGAACACAGATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCTAATTCGACTTACCTTCGAGAGAGGTTAGAGAAGGAAATTTCTAGAATTCTTTAAGTTGTTAAGTTCAGTATATATGTCTTTGATTGAATCCATGATTCATATGATTAAGAGCTTCTCCTGCTGCAGGATACTAAGATGGGTTCGAGAAGAGGAAGAGCGTATAAAAGAATATAACGGAACTTCATTGCAGTGCATAATTTTAGACATGACAGGTACTAATTTCATTAGACTTACAACATTTGGTTAGAGTTTAGCAATCATGCACTGTCTGTGTACCTTTTTTTTTGACACAGATGTTCAACCGTATCTCATGTAGTATTATTTGCTAAGATATGTGCATAAATATCTATTTTGTGATATGTGATTAATGTATGTGGACAACTTTCTTACACTATTATGCAATATTTTTCTTTTTCAGCTGTCACAGCAATAGACACAAGTGGGCTTGAAACTTTAGGTGAACTTAGAAAGATGCTAGAAAAGAGATCACTTCAGGTACAGACACTAATTGATATATTGATTTCAGAAGGCCTAAAAAATCTACCATTATTCACTTTCTAACTTCTACATTTTATAATTTGCTACTGCAGCTTGTGCTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTACATATGTCGAAAATTTTGGATACCTTTGGATTTAAAGGACTCTATCTCACAGTGGGAGAAGCTGTTGCTGACATTTCAAAATCTGAGAAAGCTCAACCTTGA
Protein sequence

>MS.gene36287.t1

MGMNCNRVEHFEETTMKIQTEIPIHQVRLPPERTSFNKLKHRLSEIFFPDDPLHRFKNQPSFTKFLLTLQFLFPIFQWGSQYTLTLLRSDVISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSRHVGVGPVSIASLVMGSMLSETVSFTQNPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLVSVYKQKDEWSWQTIVMGFGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTILVFLLRNKAHHISVIGHLAKGVNPPSVNLLYFNGPYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFLSVPLGLSIAVAISVFKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWVREEEERIKEYNGTSLQCIILDMTAVTAIDTSGLETLGELRKMLEKRSLQLVLVNPVGNVMEKLHMSKILDTFGFKGLYLTVGEAVADISKSEKAQP