AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33359

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33359.t1 MTR_4g011970 99.388 654 4 0 1 654 1 654 0.0 1314
MS.gene33359.t1 MTR_2g102243 82.416 654 106 2 3 654 1 647 0.0 1113
MS.gene33359.t1 MTR_2g102243 82.423 586 94 2 3 586 1 579 0.0 996
MS.gene33359.t1 MTR_4g084620 63.854 628 224 2 27 653 15 640 0.0 829
MS.gene33359.t1 MTR_4g084640 60.276 652 246 3 4 654 5 644 0.0 799
MS.gene33359.t1 MTR_7g095430 56.543 619 269 0 29 647 17 635 0.0 722
MS.gene33359.t1 MTR_1g071530 56.390 626 273 0 29 654 20 645 0.0 716
MS.gene33359.t1 MTR_5g061880 53.195 626 292 1 30 654 30 655 0.0 694
MS.gene33359.t1 MTR_2g008470 54.531 618 279 2 28 644 52 668 0.0 667
MS.gene33359.t1 MTR_2g008470 54.531 618 279 2 28 644 33 649 0.0 667
MS.gene33359.t1 MTR_7g095430 57.581 554 235 0 29 582 17 570 0.0 662
MS.gene33359.t1 MTR_3g073780 51.664 631 295 4 30 654 33 659 0.0 653
MS.gene33359.t1 MTR_6g086170 48.304 619 313 3 28 643 6 620 0.0 601
MS.gene33359.t1 MTR_3g073780 54.104 536 243 2 30 562 33 568 0.0 595
MS.gene33359.t1 MTR_3g073780 53.890 527 240 2 30 553 33 559 0.0 579
MS.gene33359.t1 MTR_3g087740 46.951 656 335 7 3 649 1 652 0.0 579
MS.gene33359.t1 MTR_5g061860 48.237 624 300 7 42 649 33 649 0.0 563
MS.gene33359.t1 MTR_3g073730 45.950 605 319 3 58 654 56 660 9.77e-179 523
MS.gene33359.t1 MTR_5g061860 49.811 528 243 6 42 553 33 554 2.37e-169 495
MS.gene33359.t1 MTR_3g087730 42.488 619 336 9 46 649 42 655 1.27e-159 474
MS.gene33359.t1 MTR_7g022870 34.833 600 351 12 61 643 57 633 2.33e-115 361
MS.gene33359.t1 MTR_7g022870 37.278 507 297 10 61 562 57 547 8.61e-106 332
MS.gene33359.t1 MTR_6g024420 34.091 132 68 3 232 363 54 166 9.84e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33359.t1 AT3G15990 74.390 656 163 2 1 654 1 653 0.0 1011
MS.gene33359.t1 AT1G23090 63.826 622 224 1 27 647 1 622 0.0 822
MS.gene33359.t1 AT3G51895 57.075 629 266 2 30 654 20 648 0.0 749
MS.gene33359.t1 AT3G51895 57.075 629 266 2 30 654 65 693 0.0 749
MS.gene33359.t1 AT4G02700 54.531 618 280 1 28 644 8 625 0.0 658
MS.gene33359.t1 AT4G08620 51.669 629 303 1 26 653 19 647 0.0 648
MS.gene33359.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33359.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33359.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33359.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33359.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33359.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33359.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33359.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33359.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33359.t1 AT1G78000 54.315 591 268 2 19 608 18 607 0.0 613
MS.gene33359.t1 AT5G19600 47.674 602 305 3 43 643 28 620 0.0 593
MS.gene33359.t1 AT1G78000 54.787 564 253 2 19 581 18 580 0.0 588
MS.gene33359.t1 AT1G22150 52.613 574 271 1 9 581 10 583 0.0 584
MS.gene33359.t1 AT5G10180 47.876 612 296 6 54 643 59 669 0.0 544
MS.gene33359.t1 AT1G77990 48.611 576 291 3 73 643 88 663 0.0 541
MS.gene33359.t1 AT1G78000 55.741 479 210 2 19 496 18 495 2.52e-170 496
MS.gene33359.t1 AT1G78000 55.730 445 196 1 138 581 1 445 1.21e-157 462
MS.gene33359.t1 AT3G12520 35.364 591 372 9 55 643 28 610 2.42e-118 368
MS.gene33359.t1 AT3G12520 35.364 591 372 9 55 643 44 626 2.84e-118 368
MS.gene33359.t1 AT5G13550 35.108 601 360 12 55 643 57 639 6.29e-115 360
MS.gene33359.t1 AT3G12520 37.400 500 304 8 55 553 44 535 1.46e-106 333

Find 124 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCATGAGTCAAATATTT+TGG 0.137024 4.2:-88214699 MS.gene33359:CDS
GATTCCTGCATTTATCATTT+TGG 0.179334 4.2:-88215604 MS.gene33359:CDS
TCCAATTCTCTATCTTAAAT+TGG 0.180771 4.2:-88219051 MS.gene33359:CDS
GCAAACTTGCCACCAATTAT+TGG 0.190086 4.2:-88219305 MS.gene33359:CDS
TCCTTATAGCTTCTTTATAT+TGG 0.203302 4.2:+88215625 None:intergenic
GCTGAAATCCAGAATAATTT+TGG 0.218068 4.2:+88217203 None:intergenic
TAGGCCAAACACATCGGTTT+TGG 0.225950 4.2:-88215685 MS.gene33359:CDS
TGAAGAGGCCAAAATTATTC+TGG 0.237606 4.2:-88217211 MS.gene33359:CDS
CTTTATATTGGTTTAGGTTA+TGG 0.240443 4.2:+88215637 None:intergenic
TTCACTGCCACTTTCTTTGC+TGG 0.244662 4.2:-88219026 MS.gene33359:CDS
TAGCTTCTTTATATTGGTTT+AGG 0.255101 4.2:+88215631 None:intergenic
TTCAATTGCATCATTGGTTA+TGG 0.258973 4.2:-88219111 MS.gene33359:CDS
TACTAACATAATCCAATAAT+TGG 0.264142 4.2:+88219293 None:intergenic
GCTTGTGTGTGCTCCTTCTT+TGG 0.296349 4.2:-88215979 MS.gene33359:CDS
TTCGTTCACAAAGTTTCTTC+TGG 0.300415 4.2:-88219930 MS.gene33359:CDS
TTCAAAAGGATCAACTCTAT+TGG 0.303368 4.2:+88220111 None:intergenic
TCTCATTGAAAAGACTAAAA+TGG 0.306767 4.2:+88217148 None:intergenic
TCCTGTTTCAATTGCATCAT+TGG 0.308299 4.2:-88219117 MS.gene33359:CDS
GAAACTTTGTGAACGAAGTT+TGG 0.318006 4.2:+88219936 None:intergenic
TGGTTTAGGTTATGGAATAT+TGG 0.321771 4.2:+88215645 None:intergenic
GAAACTGAATCCTAGTAAAA+TGG 0.323837 4.2:+88217406 None:intergenic
GATGCAAATAGTACCTGTTT+TGG 0.335400 4.2:-88218366 MS.gene33359:CDS
ATACTTCAGTGGTCCTCATT+TGG 0.346238 4.2:-88216817 MS.gene33359:CDS
TTGGCTCTTGCTATCAAAAC+TGG 0.349386 4.2:-88216798 MS.gene33359:CDS
GGCAACATTGGTAGGTTTCA+TGG 0.353389 4.2:-88218459 MS.gene33359:CDS
ACCAATATAAAGAAGCTATA+AGG 0.355595 4.2:-88215626 MS.gene33359:CDS
AGTTGCATTGGCAAAGTAGA+TGG 0.357725 4.2:+88215569 None:intergenic
CTCTTCATTTCAGTTCCATT+AGG 0.362515 4.2:-88215952 MS.gene33359:CDS
GGTTTATTCCAATCTTCTCT+TGG 0.372332 4.2:-88219005 MS.gene33359:CDS
CAACAACTCAAAGGGTTACT+AGG 0.374601 4.2:-88218410 MS.gene33359:CDS
GCCAATTTAAGATAGAGAAT+TGG 0.380536 4.2:+88219050 None:intergenic
ATTATCATCACTGCTGTTAT+CGG 0.382764 4.2:-88216060 MS.gene33359:CDS
TATTATCTAACCTTTCTTGC+AGG 0.383951 4.2:+88215544 None:intergenic
ATTTCAGTTCCATTAGGCCT+TGG 0.385772 4.2:-88215946 MS.gene33359:CDS
AACAAAGAAATGATGGCTAT+TGG 0.394027 4.2:-88216359 MS.gene33359:CDS
TTTCCCAAAACCGATGTGTT+TGG 0.399348 4.2:+88215681 None:intergenic
ACCAATGATGCAATTGAAAC+AGG 0.401865 4.2:+88219116 None:intergenic
TGCTCCAGCATTGTAGTTAA+CGG 0.409746 4.2:+88216185 None:intergenic
GATACATTGGTATCTCTGAT+TGG 0.409755 4.2:+88220077 None:intergenic
ATACATTATGCGAACTTAGA+AGG 0.411159 4.2:-88215175 MS.gene33359:CDS
TCAATTGCATCATTGGTTAT+GGG 0.411778 4.2:-88219110 MS.gene33359:CDS
TTCCGCTCTGATATTATATC+CGG 0.412635 4.2:-88219851 MS.gene33359:CDS
TGGTGGCAAGTTTGCAAGCT+TGG 0.413188 4.2:+88219313 None:intergenic
CTTTCTTTAGGATACTGAGA+TGG 0.423739 4.2:-88215394 MS.gene33359:intron
ACCGCAACTCCAAGGCCTAA+TGG 0.431452 4.2:+88215937 None:intergenic
AATCTTCTCTTGGTGTACTA+AGG 0.432718 4.2:-88218995 MS.gene33359:intron
TCCAATGGTGTTTGATACAT+TGG 0.436483 4.2:+88220064 None:intergenic
AATCCATGAAAAGGGTCATC+AGG 0.439230 4.2:+88219965 None:intergenic
GCTTTGATATATTCAGTACT+TGG 0.440775 4.2:-88219164 MS.gene33359:CDS
TCTTCATGTTATGTCACAAC+AGG 0.442713 4.2:-88216311 MS.gene33359:intron
TTTCTTTAGGATACTGAGAT+GGG 0.446275 4.2:-88215393 MS.gene33359:intron
TTCTTGCAGGTAAGTTGCAT+TGG 0.462099 4.2:+88215557 None:intergenic
TTGGATTCCTTTGGAATGAA+AGG 0.464886 4.2:-88214680 MS.gene33359:CDS
CTTGGAAGTTCTAGACATCT+TGG 0.471850 4.2:-88219146 MS.gene33359:CDS
TGCTAGCCTCGCCATTCCTC+AGG 0.473691 4.2:-88219819 MS.gene33359:intron
ATGCAACTTACCTGCAAGAA+AGG 0.475378 4.2:-88215554 MS.gene33359:intron
ATCAAAACTGGACTTGTCAC+TGG 0.484223 4.2:-88216786 MS.gene33359:CDS
TTGAATACAGAGACCAAAAC+AGG 0.486192 4.2:+88218353 None:intergenic
GATAACAGCAGTGATGATAA+TGG 0.492058 4.2:+88216062 None:intergenic
ATGGCTGCTAAGACAACGTT+CGG 0.494450 4.2:+88216081 None:intergenic
TCCATTAGGCCTTGGAGTTG+CGG 0.495832 4.2:-88215938 MS.gene33359:intron
TTATGGAATATTGGTGTCCC+TGG 0.500339 4.2:+88215654 None:intergenic
ACCGCGCCGCGTACAAATTG+TGG 0.502998 4.2:-88216026 MS.gene33359:CDS
TTAGTACACCAAGAGAAGAT+TGG 0.510702 4.2:+88218997 None:intergenic
CTATCAAAGGCAACATTGGT+AGG 0.514805 4.2:-88218467 MS.gene33359:CDS
GATGGTGGATTAAGTCCCTT+TGG 0.516719 4.2:+88216852 None:intergenic
TATAACATGTTTGATGATGG+TGG 0.517759 4.2:+88216837 None:intergenic
AGTTCTAGACATCTTGGTGT+TGG 0.520319 4.2:-88219140 MS.gene33359:CDS
AGCAGTATCAAATATAATCA+TGG 0.524523 4.2:-88216157 MS.gene33359:CDS
TTTCAGGAAGGAATTGCAGT+TGG 0.525631 4.2:-88216422 MS.gene33359:intron
GGATGGAAACAAAGAAATGA+TGG 0.525764 4.2:-88216366 MS.gene33359:CDS
AAATCCTGCTTCACGTCTCT+AGG 0.525812 4.2:-88215704 MS.gene33359:CDS
ACATTGGTAGGTTTCATGGC+TGG 0.529773 4.2:-88218455 MS.gene33359:CDS
TGTCACTACAACAACTCAAA+GGG 0.532681 4.2:-88218418 MS.gene33359:CDS
GAGGCTAGCAATGGTGAGAC+CGG 0.532977 4.2:+88219832 None:intergenic
TTTCTTTGTTTCCATCCACT+TGG 0.534917 4.2:+88216372 None:intergenic
TCAGCCGTTAACTACAATGC+TGG 0.538554 4.2:-88216189 MS.gene33359:CDS
ATGCGAACTTAGAAGGAGAC+TGG 0.538934 4.2:-88215168 MS.gene33359:CDS
TGAAGAGTGGTTCTTTGTGG+TGG 0.543877 4.2:+88220022 None:intergenic
ACCAATGTATCAAACACCAT+TGG 0.544380 4.2:-88220065 MS.gene33359:CDS
AGTACTGAATATATCAAAGC+AGG 0.552239 4.2:+88219167 None:intergenic
AATGAAGAGAACACCAAAGA+AGG 0.552828 4.2:+88215966 None:intergenic
ATTGGTCTTATGAACATAGC+TGG 0.553111 4.2:-88216341 MS.gene33359:CDS
TTGTTATCAACAAGAAGGCT+AGG 0.556830 4.2:+88217384 None:intergenic
ACAGCCAAAATGATAAATGC+AGG 0.557979 4.2:+88215600 None:intergenic
ATACAATCCTTTCATTCCAA+AGG 0.562151 4.2:+88214673 None:intergenic
TTGGCCTAGAGACGTGAAGC+AGG 0.562160 4.2:+88215700 None:intergenic
CTTCAGAACTACCAAGTGGA+TGG 0.562216 4.2:-88216383 MS.gene33359:CDS
TAACATAATCCAATAATTGG+TGG 0.562298 4.2:+88219296 None:intergenic
CTTGTGTTGGCAAATCCTGT+TGG 0.563326 4.2:-88214737 MS.gene33359:CDS
GTGTCACTACAACAACTCAA+AGG 0.565287 4.2:-88218419 MS.gene33359:CDS
GTTAACGGCTGATCGAGAAA+AGG 0.567574 4.2:+88216200 None:intergenic
GACAGAATAACTGAAGTCAA+TGG 0.571902 4.2:+88217173 None:intergenic
GTTGCATTGGCAAAGTAGAT+GGG 0.572656 4.2:+88215570 None:intergenic
GAAGATTGGTGAATTGCCAA+AGG 0.575624 4.2:-88216868 MS.gene33359:intron
ACTGAGATGGGTTCGAGAAG+AGG 0.576650 4.2:-88215381 MS.gene33359:CDS
GTGTCTTGTTATCAACAAGA+AGG 0.577748 4.2:+88217379 None:intergenic
AAGATTGGTGAATTGCCAAA+GGG 0.578839 4.2:-88216867 MS.gene33359:CDS
TTGATTGGTGCAGCTTGTGT+TGG 0.581372 4.2:-88214750 MS.gene33359:intron
TTGATAGCAAGAGCCAAATG+AGG 0.582240 4.2:+88216804 None:intergenic
AAAGGATTGTATCTGTCAGT+AGG 0.583509 4.2:-88214662 MS.gene33359:CDS
TGAAGCTTACCGCAACTCCA+AGG 0.591937 4.2:+88215929 None:intergenic
CGAACCTTGTGAATTTCCAA+TGG 0.598928 4.2:+88220049 None:intergenic
AATTGTGACAGAGCTTGAAG+AGG 0.600357 4.2:-88217226 MS.gene33359:intron
GAATAAACCAGCAAAGAAAG+TGG 0.605122 4.2:+88219019 None:intergenic
AAGTATAACATGTTTGATGA+TGG 0.614399 4.2:+88216834 None:intergenic
TCAAACATGTTATACTTCAG+TGG 0.614426 4.2:-88216828 MS.gene33359:CDS
AACACCATTGGAAATTCACA+AGG 0.624213 4.2:-88220053 MS.gene33359:CDS
AGGAATGGCGAGGCTAGCAA+TGG 0.626508 4.2:+88219823 None:intergenic
TCCACAATTTGTACGCGGCG+CGG 0.627795 4.2:+88216025 None:intergenic
CGTCTCTAGGCCAAACACAT+CGG 0.632092 4.2:-88215691 MS.gene33359:CDS
AAATCCTGTTGGAAATGTGA+TGG 0.641906 4.2:-88214726 MS.gene33359:CDS
CGCCGCGTACAAATTGTGGA+AGG 0.645147 4.2:-88216022 MS.gene33359:CDS
GACATACCTGAGGAATGGCG+AGG 0.651161 4.2:+88219813 None:intergenic
TGGCTGACATTTCATCATCG+TGG 0.662573 4.2:-88214631 MS.gene33359:CDS
TTCACTTCAGAACTACCAAG+TGG 0.666825 4.2:-88216387 MS.gene33359:CDS
GTGACAGGCATAGACACAAG+CGG 0.685657 4.2:-88215203 MS.gene33359:CDS
TCTGTCAGTAGGAGAAGCTG+TGG 0.687633 4.2:-88214651 MS.gene33359:CDS
AACCTTCCACAATTTGTACG+CGG 0.697031 4.2:+88216020 None:intergenic
GAACGCGTAGTAGCACTCAA+CGG 0.697606 4.2:-88215356 MS.gene33359:CDS
AAAAGATAAAGACTATACTG+AGG 0.705367 4.2:+88219872 None:intergenic
TTCGGTGTGTAATAGAACAG+CGG 0.721473 4.2:+88216099 None:intergenic
TGTATTCAAGGAAAGAGACG+AGG 0.732725 4.2:-88218339 MS.gene33359:intron
GACCGGATATAATATCAGAG+CGG 0.772362 4.2:+88219849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGCATAATAAAATATA+TGG - chr4.2:88217406-88217425 MS.gene33359:CDS 10.0%
!! AGAAAATGTTAAAAAATTAA+TGG + chr4.2:88217293-88217312 None:intergenic 10.0%
!! ATAAAAAATTGATAAATAGT+TGG + chr4.2:88217141-88217160 None:intergenic 10.0%
!! ATATGAAAAATTCTTATATA+TGG - chr4.2:88217486-88217505 MS.gene33359:intron 10.0%
!! TAAAAATTAAAAATGAACTT+TGG - chr4.2:88216171-88216190 MS.gene33359:CDS 10.0%
!!! AAATCAAAAAAAAATTCTTT+TGG + chr4.2:88215366-88215385 None:intergenic 10.0%
!!! TATTTTTTGTTGATAATAAT+TGG + chr4.2:88216962-88216981 None:intergenic 10.0%
!! AAACATTAAATAAAGTCAAA+CGG + chr4.2:88218155-88218174 None:intergenic 15.0%
!! AAATAAAAAATAACCTTTGA+AGG - chr4.2:88216219-88216238 MS.gene33359:intron 15.0%
!! AATTATGTAAGAAAATATAG+TGG + chr4.2:88216512-88216531 None:intergenic 15.0%
!! TTGTCCATTAAAAAAAAATT+AGG - chr4.2:88217106-88217125 MS.gene33359:intron 15.0%
!!! AAATATTTTTAATCACCTTA+TGG + chr4.2:88218925-88218944 None:intergenic 15.0%
!!! ATTGTAATTTTTTTTTTGAG+AGG + chr4.2:88216042-88216061 None:intergenic 15.0%
!!! ATTTTTAAAATCAAACTTTC+AGG - chr4.2:88218515-88218534 MS.gene33359:intron 15.0%
!!! GATTCCTAATTTTTTTTTAA+TGG + chr4.2:88217113-88217132 None:intergenic 15.0%
!!! GTGGATTTTTATTTTTATAT+TGG - chr4.2:88215493-88215512 MS.gene33359:intron 15.0%
!!! TTTTTTTTTAATGGACAAAT+AGG + chr4.2:88217104-88217123 None:intergenic 15.0%
!! ATAAAAAAGTGAGAAATTTG+AGG + chr4.2:88216609-88216628 None:intergenic 20.0%
!! ATTGAATAGTTAGTCAATTA+AGG - chr4.2:88217182-88217201 MS.gene33359:CDS 20.0%
!! GTATTAATAGTAATACTAGT+TGG - chr4.2:88216735-88216754 MS.gene33359:intron 20.0%
!! TACTAACATAATCCAATAAT+TGG + chr4.2:88215450-88215469 None:intergenic 20.0%
!! TATTAGTGAAAAAAATTCCA+TGG + chr4.2:88218028-88218047 None:intergenic 20.0%
!! TGTTTACATTTATGATTGAT+TGG - chr4.2:88219975-88219994 MS.gene33359:CDS 20.0%
!! TTGAATAGTTAGTCAATTAA+GGG - chr4.2:88217183-88217202 MS.gene33359:CDS 20.0%
!!! AACAAAAAAGTATATGTATC+TGG - chr4.2:88219240-88219259 MS.gene33359:intron 20.0%
!!! AGAATATTTTTTAAAAGGGA+CGG - chr4.2:88216486-88216505 MS.gene33359:intron 20.0%
!!! AGCTGAGAATATTTTTTAAA+AGG - chr4.2:88216481-88216500 MS.gene33359:intron 20.0%
!!! ATAGTTTTCATTGACTATTT+TGG - chr4.2:88219791-88219810 MS.gene33359:intron 20.0%
!!! CAAAATCAAACTTTTAATTG+TGG - chr4.2:88215178-88215197 MS.gene33359:CDS 20.0%
!!! GCTGAGAATATTTTTTAAAA+GGG - chr4.2:88216482-88216501 MS.gene33359:intron 20.0%
!!! TGAATTTTCCAAATCTTTTT+AGG - chr4.2:88218995-88219014 MS.gene33359:intron 20.0%
!!! TTTTATGATTCTATCATGAA+TGG - chr4.2:88217155-88217174 MS.gene33359:CDS 20.0%
!!! TTTTTAAAAATAAACCCACT+TGG + chr4.2:88216157-88216176 None:intergenic 20.0%
! AAAAGATAAAGACTATACTG+AGG + chr4.2:88214871-88214890 None:intergenic 25.0%
! AAGTATAACATGTTTGATGA+TGG + chr4.2:88217909-88217928 None:intergenic 25.0%
! AATATATCTACAAAAGTAGC+TGG + chr4.2:88216901-88216920 None:intergenic 25.0%
! AATTAAAAGTGACCCTTAAT+TGG + chr4.2:88217033-88217052 None:intergenic 25.0%
! ACATACACTAAATGTAACAA+AGG + chr4.2:88217660-88217679 None:intergenic 25.0%
! ACATATTGCTCTATAAAATG+TGG + chr4.2:88219267-88219286 None:intergenic 25.0%
! ACCAATATAAAGAAGCTATA+AGG - chr4.2:88219114-88219133 MS.gene33359:CDS 25.0%
! AGCAGTATCAAATATAATCA+TGG - chr4.2:88218583-88218602 MS.gene33359:intron 25.0%
! ATATATCTACAAAAGTAGCT+GGG + chr4.2:88216900-88216919 None:intergenic 25.0%
! ATGACTAATAGTATTATGCA+AGG + chr4.2:88215223-88215242 None:intergenic 25.0%
! ATTTGGAAAATTCAGTTGAA+GGG + chr4.2:88218989-88219008 None:intergenic 25.0%
! TAACATAATCCAATAATTGG+TGG + chr4.2:88215447-88215466 None:intergenic 25.0%
! TATAACATCTCTTGTATGTT+TGG + chr4.2:88217805-88217824 None:intergenic 25.0%
! TCCAATTCTCTATCTTAAAT+TGG - chr4.2:88215689-88215708 MS.gene33359:CDS 25.0%
! TCCTTATAGCTTCTTTATAT+TGG + chr4.2:88219118-88219137 None:intergenic 25.0%
! TCTCATTGAAAAGACTAAAA+TGG + chr4.2:88217595-88217614 None:intergenic 25.0%
! TCTTCTAAATGTTCCAAAAA+GGG - chr4.2:88216091-88216110 MS.gene33359:CDS 25.0%
! TGTTACATTTAGTGTATGTT+TGG - chr4.2:88217661-88217680 MS.gene33359:intron 25.0%
! TTCTTCTAAATGTTCCAAAA+AGG - chr4.2:88216090-88216109 MS.gene33359:CDS 25.0%
!! ATAAACACTTGTTAACTGTT+TGG + chr4.2:88219882-88219901 None:intergenic 25.0%
!! CGTAGTTTTTGACAAAATAA+CGG - chr4.2:88217743-88217762 MS.gene33359:intron 25.0%
!! TATCTCTGATTGGATTTTAA+TGG + chr4.2:88214656-88214675 None:intergenic 25.0%
!! TTAACATTTTCTTTTTGCAG+TGG - chr4.2:88217301-88217320 MS.gene33359:intron 25.0%
!! TTTGACTTTCTATATCACAA+GGG - chr4.2:88216928-88216947 MS.gene33359:intron 25.0%
!!! ATTTTCCAAATCTTTTTAGG+TGG - chr4.2:88218998-88219017 MS.gene33359:CDS 25.0%
!!! ATTTTTTTCTCTTCCCTTTT+TGG + chr4.2:88216107-88216126 None:intergenic 25.0%
!!! CTTTATATTGGTTTAGGTTA+TGG + chr4.2:88219106-88219125 None:intergenic 25.0%
!!! CTTTTTTGCTTTGTTTTCTT+TGG - chr4.2:88217850-88217869 MS.gene33359:intron 25.0%
!!! TAGCTTCTTTATATTGGTTT+AGG + chr4.2:88219112-88219131 None:intergenic 25.0%
!!! TCAAATATTTTGGATTCCTT+TGG - chr4.2:88220051-88220070 MS.gene33359:CDS 25.0%
!!! TCTCTTTTTGTATTTTTGCA+GGG - chr4.2:88215393-88215412 MS.gene33359:intron 25.0%
!!! TGGATTTTAATGGTTTCAAA+AGG + chr4.2:88214646-88214665 None:intergenic 25.0%
!!! TGTCTTTTCTGTTTTTACAA+AGG - chr4.2:88218843-88218862 MS.gene33359:intron 25.0%
!!! TGTGATTGATTTTCTATCAA+AGG - chr4.2:88216260-88216279 MS.gene33359:intron 25.0%
!!! TTCTCTATTTTGTTTTGTTG+TGG - chr4.2:88215474-88215493 MS.gene33359:intron 25.0%
!!! TTCTCTTTTTGTATTTTTGC+AGG - chr4.2:88215392-88215411 MS.gene33359:intron 25.0%
!!! TTTTTTGTCTAGTAGTCTAA+CGG + chr4.2:88216653-88216672 None:intergenic 25.0%
AACAAAGAAATGATGGCTAT+TGG - chr4.2:88218381-88218400 MS.gene33359:CDS 30.0%
AACTTACTTATGTTTCAGGA+AGG - chr4.2:88218306-88218325 MS.gene33359:intron 30.0%
ACACTTACATTTGCATCAAT+GGG + chr4.2:88217072-88217091 None:intergenic 30.0%
ACGTATAAGAAGACACAATT+TGG - chr4.2:88219673-88219692 MS.gene33359:intron 30.0%
ATACAATCCTTTCATTCCAA+AGG + chr4.2:88220070-88220089 None:intergenic 30.0%
ATACATTATGCGAACTTAGA+AGG - chr4.2:88219565-88219584 MS.gene33359:intron 30.0%
ATGATAAGTCCTTTCAAACA+AGG - chr4.2:88218210-88218229 MS.gene33359:intron 30.0%
ATTATCATCACTGCTGTTAT+CGG - chr4.2:88218680-88218699 MS.gene33359:intron 30.0%
CAATGAAAACTATGTGACTT+TGG + chr4.2:88219784-88219803 None:intergenic 30.0%
CAGTTAACAAGTGTTTATGT+CGG - chr4.2:88219884-88219903 MS.gene33359:CDS 30.0%
CTTAGAAACATAATCAACCA+TGG - chr4.2:88218008-88218027 MS.gene33359:intron 30.0%
CTTCAACTTACTTATGTTTC+AGG - chr4.2:88218302-88218321 MS.gene33359:intron 30.0%
GAAACTGAATCCTAGTAAAA+TGG + chr4.2:88217337-88217356 None:intergenic 30.0%
GATTTGGAAAATTCAGTTGA+AGG + chr4.2:88218990-88219009 None:intergenic 30.0%
GCTTTGATATATTCAGTACT+TGG - chr4.2:88215576-88215595 MS.gene33359:CDS 30.0%
TAAAAATAAACCCACTTGGT+GGG + chr4.2:88216153-88216172 None:intergenic 30.0%
TAACTGTTTGGAAGAGTTTA+CGG + chr4.2:88219870-88219889 None:intergenic 30.0%
TACACTTACATTTGCATCAA+TGG + chr4.2:88217073-88217092 None:intergenic 30.0%
TATTATCTAACCTTTCTTGC+AGG + chr4.2:88219199-88219218 None:intergenic 30.0%
TATTGCCACCTAAAAAGATT+TGG + chr4.2:88219006-88219025 None:intergenic 30.0%
TCAAACATGTTATACTTCAG+TGG - chr4.2:88217912-88217931 MS.gene33359:intron 30.0%
TCAGCTTATTCCATAACTTA+GGG - chr4.2:88218072-88218091 MS.gene33359:intron 30.0%
TGTTTATACTTAAGTCGAGA+GGG + chr4.2:88219224-88219243 None:intergenic 30.0%
TTAAAAATAAACCCACTTGG+TGG + chr4.2:88216154-88216173 None:intergenic 30.0%
TTATGATTGAGATTGCTTAC+TGG - chr4.2:88216871-88216890 MS.gene33359:intron 30.0%
TTCAAAAGGATCAACTCTAT+TGG + chr4.2:88214632-88214651 None:intergenic 30.0%
TTCAGCTTATTCCATAACTT+AGG - chr4.2:88218071-88218090 MS.gene33359:intron 30.0%
TTGAGTGTTTCTCTTTCTTT+AGG - chr4.2:88219334-88219353 MS.gene33359:intron 30.0%
TTGTTTATACTTAAGTCGAG+AGG + chr4.2:88219225-88219244 None:intergenic 30.0%
! AGTACTGAATATATCAAAGC+AGG + chr4.2:88215576-88215595 None:intergenic 30.0%
! AGTTTTTGACAAAATAACGG+TGG - chr4.2:88217746-88217765 MS.gene33359:intron 30.0%
! CTTTGACTTTCTATATCACA+AGG - chr4.2:88216927-88216946 MS.gene33359:intron 30.0%
! GATTCCTGCATTTATCATTT+TGG - chr4.2:88219136-88219155 MS.gene33359:CDS 30.0%
! GCCAATTTAAGATAGAGAAT+TGG + chr4.2:88215693-88215712 None:intergenic 30.0%
! GCTGAAATCCAGAATAATTT+TGG + chr4.2:88217540-88217559 None:intergenic 30.0%
! GGTTTTTGAATCCATGAAAA+GGG + chr4.2:88214786-88214805 None:intergenic 30.0%
! GTTGCATGAGTCAAATATTT+TGG - chr4.2:88220041-88220060 MS.gene33359:CDS 30.0%
! TCAATTGCATCATTGGTTAT+GGG - chr4.2:88215630-88215649 MS.gene33359:CDS 30.0%
! TGCATAATTTTAGACATGAC+AGG - chr4.2:88219420-88219439 MS.gene33359:intron 30.0%
! TGGTTTAGGTTATGGAATAT+TGG + chr4.2:88219098-88219117 None:intergenic 30.0%
! TGGTTTTTGAATCCATGAAA+AGG + chr4.2:88214787-88214806 None:intergenic 30.0%
! TTCAATTGCATCATTGGTTA+TGG - chr4.2:88215629-88215648 MS.gene33359:CDS 30.0%
! TTTTCTATCAAAGGCAACAT+TGG - chr4.2:88216269-88216288 MS.gene33359:intron 30.0%
!! ACATGTTCCCTATTTTTCAA+TGG - chr4.2:88214842-88214861 MS.gene33359:intron 30.0%
!! ATGTCTAAGTTTTTGAAGAG+TGG + chr4.2:88214734-88214753 None:intergenic 30.0%
!! ATGTTCCCTATTTTTCAATG+GGG - chr4.2:88214844-88214863 MS.gene33359:intron 30.0%
!! CATGTTCCCTATTTTTCAAT+GGG - chr4.2:88214843-88214862 MS.gene33359:intron 30.0%
!! TATAACATGTTTGATGATGG+TGG + chr4.2:88217906-88217925 None:intergenic 30.0%
!! TTTCTTTAGGATACTGAGAT+GGG - chr4.2:88219347-88219366 MS.gene33359:intron 30.0%
!!! CTTTGTTTTCTTTGGAAGAT+TGG - chr4.2:88217858-88217877 MS.gene33359:intron 30.0%
!!! GAATGTTTTGAAGAGTTTTG+TGG + chr4.2:88216812-88216831 None:intergenic 30.0%
AAAGGATTGTATCTGTCAGT+AGG - chr4.2:88220078-88220097 MS.gene33359:CDS 35.0%
AAATCCTGTTGGAAATGTGA+TGG - chr4.2:88220014-88220033 MS.gene33359:CDS 35.0%
AACACCATTGGAAATTCACA+AGG - chr4.2:88214687-88214706 MS.gene33359:CDS 35.0%
AAGATTGGTGAATTGCCAAA+GGG - chr4.2:88217873-88217892 MS.gene33359:intron 35.0%
AATGAAGAGAACACCAAAGA+AGG + chr4.2:88218777-88218796 None:intergenic 35.0%
ACAGCCAAAATGATAAATGC+AGG + chr4.2:88219143-88219162 None:intergenic 35.0%
ACAGCTGCAAAAAAAAAGCA+AGG + chr4.2:88219519-88219538 None:intergenic 35.0%
ACCAATGATGCAATTGAAAC+AGG + chr4.2:88215627-88215646 None:intergenic 35.0%
ACCAATGTATCAAACACCAT+TGG - chr4.2:88214675-88214694 MS.gene33359:CDS 35.0%
ACTGGAACAAAAATCACTTC+AGG - chr4.2:88219590-88219609 MS.gene33359:intron 35.0%
AGCTACTCAATATGTCCATT+CGG + chr4.2:88217008-88217027 None:intergenic 35.0%
ATGCATGCAAGATGAAACTA+TGG + chr4.2:88215248-88215267 None:intergenic 35.0%
ATGTTTCTCACCCTAAGTTA+TGG + chr4.2:88218085-88218104 None:intergenic 35.0%
ATTGAGTAGCTAGCCAATTA+AGG - chr4.2:88217017-88217036 MS.gene33359:intron 35.0%
CTCTTCATTTCAGTTCCATT+AGG - chr4.2:88218788-88218807 MS.gene33359:intron 35.0%
GAAACACTCAAAAAATGCCT+CGG + chr4.2:88219325-88219344 None:intergenic 35.0%
GAAACTTTGTGAACGAAGTT+TGG + chr4.2:88214807-88214826 None:intergenic 35.0%
GAATAAACCAGCAAAGAAAG+TGG + chr4.2:88215724-88215743 None:intergenic 35.0%
GACAGAATAACTGAAGTCAA+TGG + chr4.2:88217570-88217589 None:intergenic 35.0%
GATAACAGCAGTGATGATAA+TGG + chr4.2:88218681-88218700 None:intergenic 35.0%
GATACATTGGTATCTCTGAT+TGG + chr4.2:88214666-88214685 None:intergenic 35.0%
GGATGGAAACAAAGAAATGA+TGG - chr4.2:88218374-88218393 MS.gene33359:CDS 35.0%
GGTTTATTCCAATCTTCTCT+TGG - chr4.2:88215735-88215754 MS.gene33359:intron 35.0%
GTTGTATGCAACTACAATTG+TGG + chr4.2:88215026-88215045 None:intergenic 35.0%
TATAAGCCTTAGAGCATGTT+TGG + chr4.2:88218240-88218259 None:intergenic 35.0%
TCAGGTATGTCAAAATATCG+AGG - chr4.2:88214939-88214958 MS.gene33359:intron 35.0%
TCCAATGGTGTTTGATACAT+TGG + chr4.2:88214679-88214698 None:intergenic 35.0%
TCCTGTTTCAATTGCATCAT+TGG - chr4.2:88215623-88215642 MS.gene33359:CDS 35.0%
TCTCGTAAGTATAGTTCAGT+TGG - chr4.2:88216544-88216563 MS.gene33359:intron 35.0%
TCTTCATGTTATGTCACAAC+AGG - chr4.2:88218429-88218448 MS.gene33359:CDS 35.0%
TGAAGAGGCCAAAATTATTC+TGG - chr4.2:88217529-88217548 MS.gene33359:intron 35.0%
TGTCACTACAACAACTCAAA+GGG - chr4.2:88216322-88216341 MS.gene33359:CDS 35.0%
TTAGTACACCAAGAGAAGAT+TGG + chr4.2:88215746-88215765 None:intergenic 35.0%
TTCCGCTCTGATATTATATC+CGG - chr4.2:88214889-88214908 MS.gene33359:intron 35.0%
TTCGTTCACAAAGTTTCTTC+TGG - chr4.2:88214810-88214829 MS.gene33359:intron 35.0%
TTGAATACAGAGACCAAAAC+AGG + chr4.2:88216390-88216409 None:intergenic 35.0%
TTGAGTAGCTAGCCAATTAA+GGG - chr4.2:88217018-88217037 MS.gene33359:intron 35.0%
TTGTTATCAACAAGAAGGCT+AGG + chr4.2:88217359-88217378 None:intergenic 35.0%
TTTGGAAGAGTTTACGGAAA+CGG + chr4.2:88219864-88219883 None:intergenic 35.0%
! AAAAATAAACCCACTTGGTG+GGG + chr4.2:88216152-88216171 None:intergenic 35.0%
! AAGTTTTTGCAAGCATGATG+TGG - chr4.2:88215068-88215087 MS.gene33359:intron 35.0%
! AATCTTCTCTTGGTGTACTA+AGG - chr4.2:88215745-88215764 MS.gene33359:intron 35.0%
! ACATTTCAAAGATTAGTCCG+AGG - chr4.2:88219305-88219324 MS.gene33359:CDS 35.0%
! ACTGTGATTTTGCCAAACTT+AGG - chr4.2:88217773-88217792 MS.gene33359:intron 35.0%
! CTGTGATTTTGCCAAACTTA+GGG - chr4.2:88217774-88217793 MS.gene33359:intron 35.0%
! GATGCAAATAGTACCTGTTT+TGG - chr4.2:88216374-88216393 MS.gene33359:CDS 35.0%
! GTGTCTTGTTATCAACAAGA+AGG + chr4.2:88217364-88217383 None:intergenic 35.0%
! TCATGGCAAACCATTTTACT+AGG - chr4.2:88217324-88217343 MS.gene33359:intron 35.0%
! TTTCTTTGTTTCCATCCACT+TGG + chr4.2:88218371-88218390 None:intergenic 35.0%
! TTTTCCATCACATTTCCAAC+AGG + chr4.2:88220021-88220040 None:intergenic 35.0%
! TTTTCTTTTTGCAGTGGTCA+TGG - chr4.2:88217307-88217326 MS.gene33359:intron 35.0%
!! ATTGGTCTTATGAACATAGC+TGG - chr4.2:88218399-88218418 MS.gene33359:CDS 35.0%
!! ATTTTGACATACCTGAGGAA+TGG + chr4.2:88214935-88214954 None:intergenic 35.0%
!! CTTTCTTTAGGATACTGAGA+TGG - chr4.2:88219346-88219365 MS.gene33359:intron 35.0%
!! TTGGATTCCTTTGGAATGAA+AGG - chr4.2:88220060-88220079 MS.gene33359:CDS 35.0%
!! TTTGGATTGCCTTGTTTGAA+AGG + chr4.2:88218222-88218241 None:intergenic 35.0%
!! TTTTGAAGAGTGGTTCTTTG+TGG + chr4.2:88214724-88214743 None:intergenic 35.0%
!!! AATATTTTTTCCCCACCAAG+TGG - chr4.2:88216139-88216158 MS.gene33359:CDS 35.0%
!!! ATATTTTTTCCCCACCAAGT+GGG - chr4.2:88216140-88216159 MS.gene33359:CDS 35.0%
!!! TCGATATTTTGACATACCTG+AGG + chr4.2:88214940-88214959 None:intergenic 35.0%
!!! TGTTTTGGTCTCTGTATTCA+AGG - chr4.2:88216389-88216408 MS.gene33359:CDS 35.0%
!!! TTTTTTTTTGCAGCTGTGAC+AGG - chr4.2:88219522-88219541 MS.gene33359:intron 35.0%
AACCTTCCACAATTTGTACG+CGG + chr4.2:88218723-88218742 None:intergenic 40.0%
AACTACAATTGTGGTCGCAT+CGG + chr4.2:88215017-88215036 None:intergenic 40.0%
AATCCATGAAAAGGGTCATC+AGG + chr4.2:88214778-88214797 None:intergenic 40.0%
AATTGTGACAGAGCTTGAAG+AGG - chr4.2:88217514-88217533 MS.gene33359:intron 40.0%
ATACTTCAGTGGTCCTCATT+TGG - chr4.2:88217923-88217942 MS.gene33359:intron 40.0%
ATCAAAACTGGACTTGTCAC+TGG - chr4.2:88217954-88217973 MS.gene33359:intron 40.0%
ATCTTGTGCGATGCAAAATG+AGG + chr4.2:88219626-88219645 None:intergenic 40.0%
ATGCAACTTACCTGCAAGAA+AGG - chr4.2:88219186-88219205 MS.gene33359:intron 40.0%
ATTTCAGTTCCATTAGGCCT+TGG - chr4.2:88218794-88218813 MS.gene33359:intron 40.0%
CAACAACTCAAAGGGTTACT+AGG - chr4.2:88216330-88216349 MS.gene33359:CDS 40.0%
CGAACCTTGTGAATTTCCAA+TGG + chr4.2:88214694-88214713 None:intergenic 40.0%
CTACTCAATATGTCCATTCG+GGG + chr4.2:88217006-88217025 None:intergenic 40.0%
CTATCAAAGGCAACATTGGT+AGG - chr4.2:88216273-88216292 MS.gene33359:intron 40.0%
GAAGATTGGTGAATTGCCAA+AGG - chr4.2:88217872-88217891 MS.gene33359:intron 40.0%
GACCGGATATAATATCAGAG+CGG + chr4.2:88214894-88214913 None:intergenic 40.0%
GAGGACCCCATTGAAAAATA+GGG + chr4.2:88214852-88214871 None:intergenic 40.0%
GCAAACTTGCCACCAATTAT+TGG - chr4.2:88215435-88215454 MS.gene33359:intron 40.0%
GCTACTCAATATGTCCATTC+GGG + chr4.2:88217007-88217026 None:intergenic 40.0%
TAACCTGTGTACACCTTCAA+AGG + chr4.2:88216235-88216254 None:intergenic 40.0%
TCATCTTGCATGCATGAGTT+TGG - chr4.2:88215253-88215272 MS.gene33359:intron 40.0%
TCGGGGTAGAATCAGAAAAA+AGG + chr4.2:88216989-88217008 None:intergenic 40.0%
TGAGGACCCCATTGAAAAAT+AGG + chr4.2:88214853-88214872 None:intergenic 40.0%
TGCTCCAGCATTGTAGTTAA+CGG + chr4.2:88218558-88218577 None:intergenic 40.0%
TGTATTCAAGGAAAGAGACG+AGG - chr4.2:88216401-88216420 MS.gene33359:CDS 40.0%
TTAGGGTGAGAAACATGTCT+AGG - chr4.2:88218089-88218108 MS.gene33359:intron 40.0%
TTCACTTCAGAACTACCAAG+TGG - chr4.2:88218353-88218372 MS.gene33359:CDS 40.0%
TTCTTGCAGGTAAGTTGCAT+TGG + chr4.2:88219186-88219205 None:intergenic 40.0%
TTTCAGGAAGGAATTGCAGT+TGG - chr4.2:88218318-88218337 MS.gene33359:intron 40.0%
TTTCCCAAAACCGATGTGTT+TGG + chr4.2:88219062-88219081 None:intergenic 40.0%
! AGTTGCATTGGCAAAGTAGA+TGG + chr4.2:88219174-88219193 None:intergenic 40.0%
! GTGTCACTACAACAACTCAA+AGG - chr4.2:88216321-88216340 MS.gene33359:CDS 40.0%
! GTTGCATTGGCAAAGTAGAT+GGG + chr4.2:88219173-88219192 None:intergenic 40.0%
! GTTTGACTTTGACGAGATCA+CGG - chr4.2:88217690-88217709 MS.gene33359:intron 40.0%
! TAACCTTTGAAGGTGTACAC+AGG - chr4.2:88216229-88216248 MS.gene33359:intron 40.0%
! TTATGGAATATTGGTGTCCC+TGG + chr4.2:88219089-88219108 None:intergenic 40.0%
! TTCGGTGTGTAATAGAACAG+CGG + chr4.2:88218644-88218663 None:intergenic 40.0%
! TTGATAGCAAGAGCCAAATG+AGG + chr4.2:88217939-88217958 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+TGG - chr4.2:88217942-88217961 MS.gene33359:intron 40.0%
! TTTCCTGATGACCCTTTTCA+TGG - chr4.2:88214772-88214791 MS.gene33359:intron 40.0%
! TTTGAAGGTGTACACAGGTT+AGG - chr4.2:88216234-88216253 MS.gene33359:intron 40.0%
! TTTTCTGATTCTACCCCGAA+TGG - chr4.2:88216990-88217009 MS.gene33359:intron 40.0%
!! AGTTCTAGACATCTTGGTGT+TGG - chr4.2:88215600-88215619 MS.gene33359:CDS 40.0%
!! CTTGGAAGTTCTAGACATCT+TGG - chr4.2:88215594-88215613 MS.gene33359:CDS 40.0%
!! GTTTGGATTAGCCCTAAGTT+TGG + chr4.2:88217788-88217807 None:intergenic 40.0%
!! TAGTTCAGTTGGTAGCTACT+AGG - chr4.2:88216555-88216574 MS.gene33359:intron 40.0%
AAATCCTGCTTCACGTCTCT+AGG - chr4.2:88219036-88219055 MS.gene33359:CDS 45.0%
ACATTGGTAGGTTTCATGGC+TGG - chr4.2:88216285-88216304 MS.gene33359:intron 45.0%
ATGCGAACTTAGAAGGAGAC+TGG - chr4.2:88219572-88219591 MS.gene33359:intron 45.0%
ATGGCTGCTAAGACAACGTT+CGG + chr4.2:88218662-88218681 None:intergenic 45.0%
CTTCAGAACTACCAAGTGGA+TGG - chr4.2:88218357-88218376 MS.gene33359:CDS 45.0%
GGCAACATTGGTAGGTTTCA+TGG - chr4.2:88216281-88216300 MS.gene33359:intron 45.0%
GGCAATCCAAACATGCTCTA+AGG - chr4.2:88218231-88218250 MS.gene33359:intron 45.0%
GTTAACGGCTGATCGAGAAA+AGG + chr4.2:88218543-88218562 None:intergenic 45.0%
TCAGCCGTTAACTACAATGC+TGG - chr4.2:88218551-88218570 MS.gene33359:intron 45.0%
TGAAGAGTGGTTCTTTGTGG+TGG + chr4.2:88214721-88214740 None:intergenic 45.0%
TGGCTGACATTTCATCATCG+TGG - chr4.2:88220109-88220128 MS.gene33359:CDS 45.0%
TTGATTGGTGCAGCTTGTGT+TGG - chr4.2:88219990-88220009 MS.gene33359:CDS 45.0%
! CTTGTGTTGGCAAATCCTGT+TGG - chr4.2:88220003-88220022 MS.gene33359:CDS 45.0%
!! GATGGTGGATTAAGTCCCTT+TGG + chr4.2:88217891-88217910 None:intergenic 45.0%
!! TTCACTGCCACTTTCTTTGC+TGG - chr4.2:88215714-88215733 MS.gene33359:CDS 45.0%
!!! AGGCCAAACACATCGGTTTT+GGG - chr4.2:88219056-88219075 MS.gene33359:CDS 45.0%
!!! CGGTTTTGGGAAACATTCCA+GGG - chr4.2:88219069-88219088 MS.gene33359:CDS 45.0%
!!! TAGGCCAAACACATCGGTTT+TGG - chr4.2:88219055-88219074 MS.gene33359:CDS 45.0%
!!! TCGGTTTTGGGAAACATTCC+AGG - chr4.2:88219068-88219087 MS.gene33359:CDS 45.0%
!! AAAAAAAAAAAAAACTATAA+TGG + chr4.2:88215297-88215316 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr4.2:88215308-88215327 MS.gene33359:intron 5.0%
CGTCTCTAGGCCAAACACAT+CGG - chr4.2:88219049-88219068 MS.gene33359:CDS 50.0%
GAACGCGTAGTAGCACTCAA+CGG - chr4.2:88219384-88219403 MS.gene33359:intron 50.0%
GCTTGTGTGTGCTCCTTCTT+TGG - chr4.2:88218761-88218780 MS.gene33359:intron 50.0%
GTGACAGGCATAGACACAAG+CGG - chr4.2:88219537-88219556 MS.gene33359:intron 50.0%
TCCATTAGGCCTTGGAGTTG+CGG - chr4.2:88218802-88218821 MS.gene33359:intron 50.0%
TCTGTCAGTAGGAGAAGCTG+TGG - chr4.2:88220089-88220108 MS.gene33359:CDS 50.0%
TGAAGCTTACCGCAACTCCA+AGG + chr4.2:88218814-88218833 None:intergenic 50.0%
TGGTGGCAAGTTTGCAAGCT+TGG + chr4.2:88215430-88215449 None:intergenic 50.0%
! ACTGAGATGGGTTCGAGAAG+AGG - chr4.2:88219359-88219378 MS.gene33359:intron 50.0%
ACCGCAACTCCAAGGCCTAA+TGG + chr4.2:88218806-88218825 None:intergenic 55.0%
AGGAATGGCGAGGCTAGCAA+TGG + chr4.2:88214920-88214939 None:intergenic 55.0%
CGCCGCGTACAAATTGTGGA+AGG - chr4.2:88218718-88218737 MS.gene33359:intron 55.0%
GACATACCTGAGGAATGGCG+AGG + chr4.2:88214930-88214949 None:intergenic 55.0%
GAGGCTAGCAATGGTGAGAC+CGG + chr4.2:88214911-88214930 None:intergenic 55.0%
TCCACAATTTGTACGCGGCG+CGG + chr4.2:88218718-88218737 None:intergenic 55.0%
TTGGCCTAGAGACGTGAAGC+AGG + chr4.2:88219043-88219062 None:intergenic 55.0%
ACCGCGCCGCGTACAAATTG+TGG - chr4.2:88218714-88218733 MS.gene33359:intron 60.0%
! TGCTAGCCTCGCCATTCCTC+AGG - chr4.2:88214921-88214940 MS.gene33359:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 88214616 88220146 88214616 ID=MS.gene33359
chr4.2 mRNA 88214616 88220146 88214616 ID=MS.gene33359.t1;Parent=MS.gene33359
chr4.2 exon 88219820 88220146 88219820 ID=MS.gene33359.t1.exon1;Parent=MS.gene33359.t1
chr4.2 CDS 88219820 88220146 88219820 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88219300 88219348 88219300 ID=MS.gene33359.t1.exon2;Parent=MS.gene33359.t1
chr4.2 CDS 88219300 88219348 88219300 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88218996 88219203 88218996 ID=MS.gene33359.t1.exon3;Parent=MS.gene33359.t1
chr4.2 CDS 88218996 88219203 88218996 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88218340 88218511 88218340 ID=MS.gene33359.t1.exon4;Parent=MS.gene33359.t1
chr4.2 CDS 88218340 88218511 88218340 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88217376 88217441 88217376 ID=MS.gene33359.t1.exon5;Parent=MS.gene33359.t1
chr4.2 CDS 88217376 88217441 88217376 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88217124 88217237 88217124 ID=MS.gene33359.t1.exon6;Parent=MS.gene33359.t1
chr4.2 CDS 88217124 88217237 88217124 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88216770 88216886 88216770 ID=MS.gene33359.t1.exon7;Parent=MS.gene33359.t1
chr4.2 CDS 88216770 88216886 88216770 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88216312 88216438 88216312 ID=MS.gene33359.t1.exon8;Parent=MS.gene33359.t1
chr4.2 CDS 88216312 88216438 88216312 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88215939 88216225 88215939 ID=MS.gene33359.t1.exon9;Parent=MS.gene33359.t1
chr4.2 CDS 88215939 88216225 88215939 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88215555 88215745 88215555 ID=MS.gene33359.t1.exon10;Parent=MS.gene33359.t1
chr4.2 CDS 88215555 88215745 88215555 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88215321 88215406 88215321 ID=MS.gene33359.t1.exon11;Parent=MS.gene33359.t1
chr4.2 CDS 88215321 88215406 88215321 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88215151 88215227 88215151 ID=MS.gene33359.t1.exon12;Parent=MS.gene33359.t1
chr4.2 CDS 88215151 88215227 88215151 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
chr4.2 exon 88214616 88214759 88214616 ID=MS.gene33359.t1.exon13;Parent=MS.gene33359.t1
chr4.2 CDS 88214616 88214759 88214616 ID=cds.MS.gene33359.t1;Parent=MS.gene33359.t1
Gene Sequence

>MS.gene33359

ATGGGTGTGAATTCCAATAGAGTTGATCCTTTTGAAACCATTAAAATCCAATCAGAGATACCAATGTATCAAACACCATTGGAAATTCACAAGGTTCGTTTGCCACCACAAAGAACCACTCTTCAAAAACTTAGACATAGACTCTCTGAAATCTTTTTTCCTGATGACCCTTTTCATGGATTCAAAAACCAAACTTCGTTCACAAAGTTTCTTCTGGCTCTTCAATACATGTTCCCTATTTTTCAATGGGGTCCTCAGTATAGTCTTTATCTTTTCCGCTCTGATATTATATCCGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGTATGTCAAAATATCGAGGTTTTAAATTGAAGTCGCAATAACATTTGTTAAAAGAGTATATATAGATGTTACCGATGCGACCACAATTGTAGTTGCATACAACGATTTTTTAAACGTCGCATAATAAGTTTTTGCAAGCATGATGTGGTTTGTTTAATTCAAAATTCGTAAAATGAAAAAGTTTTATCAAATAAAATGTTACTAACGACTATTTTACAAACTTTTGTTGAAGTTACAAAATCAAACTTTTAATTGTGGTTGATCACAATATTTGAGACCTTGCATAATACTATTAGTCATAGCCATAGTTTCATCTTGCATGCATGAGTTTGGTTTTGTTAATGTATACTACCATTATAGTTTTTTTTTTTTTTTTTTTTTTTTGAGGATATAAGTTAATATTTAATTTAATGAAACTTGCCAAAAGAATTTTTTTTTGATTTTTTTCTTTCTCTTTTTGTATTTTTGCAGGGAATCAGTTATGCCAAGCTTGCAAACTTGCCACCAATTATTGGATTATGTTAGTATTCATTCTCTATTTTGTTTTGTTGTGGATTTTTATTTTTATATTGGTTGATATTTAATTAAATTTATATATCATCATTACTACATGCAGATTCAAGTTTTGTACCTGCTTTGATATATTCAGTACTTGGAAGTTCTAGACATCTTGGTGTTGGTCCTGTTTCAATTGCATCATTGGTTATGGGATCAATGTTAAGTGAAAGTGTTTCTTATAGTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGTTTATTCCAATCTTCTCTTGGTGTACTAAGGTACTAATAATCAATCATGCACAAATTAAAATGTTTTCAAAAAAAGAAAAAGAGAAATTAGCATAATATCATCACTTAACGTAGAACATAAATTATATTAGAAGTTTATTTTTACAAAAAAAAAAACAATTATAGAAAATTAAATAATTTAGTTGAGTATTTGTTCAATAAAGTGCTATAGAAAAATAATTAAGTTCTTATTAAAAAGTTACTCTGAAAATGAAATAAACTAAAAATCATTTCATAATATTTTAATATAATTTTTATGAGAGCCTCTCAAAAAAAAAATTACAATGAGATAAACTCAAATGAGTTTTGATAAATTCTTCTAAATGTTCCAAAAAGGGAAGAGAAAAAAATGAAGAAAATTACAATATTTTTTCCCCACCAAGTGGGTTTATTTTTAAAAATTAAAAATGAACTTTGGAAAATTATATTTTATGATTAAAAATAAATAAAAAATAACCTTTGAAGGTGTACACAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCAACATTGGTAGGTTTCATGGCTGGTGCAGCAATCATTGTGTCACTACAACAACTCAAAGGGTTACTAGGAATAGTTCATTTCACAAGCAAGATGCAAATAGTACCTGTTTTGGTCTCTGTATTCAAGGAAAGAGACGAGGTATATTTTGATTTTGATGTTTTTTTTAATGTTAAAAAATTATACATTAAAGAATCTAAGCTGAGAATATTTTTTAAAAGGGACGGCCACTATATTTTCTTACATAATTTATAATTTAACGTCTCGTAAGTATAGTTCAGTTGGTAGCTACTAGGAGCATTATTACAAGAATCAGAGTTTGAACCTCAAATTTCTCACTTTTTTATACATAATGTGTGTGAATGTAGCCGTTAGACTACTAGACAAAAAAAAATCTAAATAATTATGTTTTGCAAGTTTTTAAAATATTAATTTTTTGAAAGCGTTTTTAAAGTATTAATAGTAATACTAGTTGGTAGAGTAAAGCTACAATTGAAAAAATAAAATAAAAAATAAATTAATCACAACCACAAAACTCTTCAAAACATTCTTATAGCACTGATTCTGTTTTAAGAAATAAGAATTAACATTATGATTGAGATTGCTTACTGGAATCCCAGCTACTTTTGTAGATATATTTTTTTACTTTGACTTTCTATATCACAAGGGATCATATTCCAATTATTATCAACAAAAAATATATTCCTTTTTTCTGATTCTACCCCGAATGGACATATTGAGTAGCTAGCCAATTAAGGGTCACTTTTAATTGAAAATACATAGTTGTCCCATTGATGCAAATGTAAGTGTAATGTAATACCTATTTGTCCATTAAAAAAAAATTAGGAATCATATTCCAACTATTTATCAATTTTTTATGATTCTATCATGAATGGACATATTGAATAGTTAGTCAATTAAGGGTCACTTTTAAATGAAAATACATATTTGTCCCATTGATGCAAATGTAAGTGTAATTTAATTAATTATAATTACATACATATATGTCCATTAATTTTTTAACATTTTCTTTTTGCAGTGGTCATGGCAAACCATTTTACTAGGATTCAGTTTCCTAGCCTTCTTGTTGATAACAAGACACATTGTAAGATTCTTCATCTTGCAATTTGCATAATAAAATATATGGACTATTGTTTTTTGCTTTGATAAGTGATAATTATTTTAATTTCATTTGCTTCTTAATATATGAAAAATTCTTATATATGGTTTTAAATTGTGACAGAGCTTGAAGAGGCCAAAATTATTCTGGATTTCAGCAGCTGCACCATTGACTTCAGTTATTCTGTCAACCATTTTAGTCTTTTCAATGAGACATAAGATCAATAAAATAGCTATTGTAAGAAAAGACACTTTACCTTTGTTACATTTAGTGTATGTTTGGAATAATGTTTGACTTTGACGAGATCACGGTCACATTGTGATTCTGTTGAAGCTTCAAAGCGTAGTTTTTGACAAAATAACGGTGGCAACACTGTGATTTTGCCAAACTTAGGGCTAATCCAAACATACAAGAGATGTTATATAGAAATGATCTTATTAATAACTCTCTTTTTTGCTTTGTTTTCTTTGGAAGATTGGTGAATTGCCAAAGGGACTTAATCCACCATCATCAAACATGTTATACTTCAGTGGTCCTCATTTGGCTCTTGCTATCAAAACTGGACTTGTCACTGGAATCTTGTCTCTCACTGTAAGCTTTCTCAAACTTAGAAACATAATCAACCATGGAATTTTTTTCACTAATACTACTACATGTCTATAAGTTGTTTTCAGCTTATTCCATAACTTAGGGTGAGAAACATGTCTAGGATAACTTATGAAAAAAAAAAACTTATAGTTTATATGAAAACCGTTTGACTTTATTTAATGTTTTGTTATAGAAATAGCTTGTACATATAAGCACTTAAATGATAAGTCCTTTCAAACAAGGCAATCCAAACATGCTCTAAGGCTTATAGCTTCAACAAACAAACAAAATGAAATACATCAAATAACTCAACTTCAACTTACTTATGTTTCAGGAAGGAATTGCAGTTGGAAGAACATTTGCTTCACTTCAGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGCAATGATTCATCACAAGTAGTTGTTAAAGAAATCAAAGTTTTTCAAGAAAAATATCAATTCTAATTTTTAAAATCAAACTTTCAGGATCCTTTTCTCGATCAGCCGTTAACTACAATGCTGGAGCACAGACAGCAGTATCAAATATAATCATGGCATCAGCAGTTCTTGTGACACTTCTGTTTCTCATGCCGCTGTTCTATTACACACCGAACGTTGTCTTAGCAGCCATTATCATCACTGCTGTTATCGGTCTAATTGATTACCGCGCCGCGTACAAATTGTGGAAGGTTGACAAGCTTGATTTCTTAGCTTGTGTGTGCTCCTTCTTTGGTGTTCTCTTCATTTCAGTTCCATTAGGCCTTGGAGTTGCGGTAAGCTTCAAAATTCACATGTCTTTTCTGTTTTTACAAAGGATATAACTCATATACACTGACAATGTAAAAATCATTTCACTGTCGATCATTCGTAACCATAAGGTGATTAAAAATATTTGACTTCAATCATAACTATTTCTGTTAAAAGCATGTTCATTACCCTTCAACTGAATTTTCCAAATCTTTTTAGGTGGCAATATCAGTCTTCAAAATCCTGCTTCACGTCTCTAGGCCAAACACATCGGTTTTGGGAAACATTCCAGGGACACCAATATTCCATAACCTAAACCAATATAAAGAAGCTATAAGGATTCCTGCATTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCCAATGCAACTTACCTGCAAGAAAGGTTAGATAATACTCCCTCTCGACTTAAGTATAAACAAAAAAGTATATGTATCTGGTCCACATTTTATAGAGCAATATGTATGCTTGTCAAGTTTTGTACATTTCAAAGATTAGTCCGAGGCATTTTTTGAGTGTTTCTCTTTCTTTAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACGCGTAGTAGCACTCAACGGAAGTGCATTGAAATGCATAATTTTAGACATGACAGGCAAGTATTTCGTTTCGCTTGTGAAGTTTGTTATCAAAGTTTTGAGATCATTTTGATTTAAAAGTTGTATTTTTCCTTGCTTTTTTTTTGCAGCTGTGACAGGCATAGACACAAGCGGAATCGATACATTATGCGAACTTAGAAGGAGACTGGAACAAAAATCACTTCAGGTAAATATATACCTCATTTTGCATCGCACAAGATGCAACACTAGTATATACTAATTGTAACACGTATAAGAAGACACAATTTGGATAAATAGCTTAATTAAACACTTATAACATAAGTGTTTATCATATAAATGCTTATGTATAAGCTATTTCTATAACATAAGATAAACCAAAGTCACATAGTTTTCATTGACTATTTTGGAGAACTTATGAAAATAAGCTAAAAACAACTAATAGACAAGCTATAAACCGTTTCCGTAAACTCTTCCAAACAGTTAACAAGTGTTTATGTCGGTAAATAAACTTAAATAAATAAATTTGAACATGTCTTAAATTTAATACTTCACTAAGCTTTGTTTCTAATGTTTACATTTATGATTGATTGGTGCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATGAGTCAAATATTTTGGATTCCTTTGGAATGAAAGGATTGTATCTGTCAGTAGGAGAAGCTGTGGCTGACATTTCATCATCGTGGAAAGCTCAGCCTTGA
Protein sequence

>MS.gene33359.t1

MGVNSNRVDPFETIKIQSEIPMYQTPLEIHKVRLPPQRTTLQKLRHRLSEIFFPDDPFHGFKNQTSFTKFLLALQYMFPIFQWGPQYSLYLFRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSVLGSSRHLGVGPVSIASLVMGSMLSESVSYSQDPILYLKLAFTATFFAGLFQSSLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTSKMQIVPVLVSVFKERDEWSWQTILLGFSFLAFLLITRHISLKRPKLFWISAAAPLTSVILSTILVFSMRHKINKIAIIGELPKGLNPPSSNMLYFSGPHLALAIKTGLVTGILSLTEGIAVGRTFASLQNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYRAAYKLWKVDKLDFLACVCSFFGVLFISVPLGLGVAVAISVFKILLHVSRPNTSVLGNIPGTPIFHNLNQYKEAIRIPAFIILAVESPIYFANATYLQERILRWVREEEERVVALNGSALKCIILDMTAVTGIDTSGIDTLCELRRRLEQKSLQLVLANPVGNVMEKLHESNILDSFGMKGLYLSVGEAVADISSSWKAQP