Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29852.t1 | XP_013460839.1 | 98.9 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.00E+00 | 1254.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29852.t1 | Q9FEP7 | 75.9 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 7.7e-280 | 964.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29852.t1 | A0A072V0K2 | 98.9 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0e+00 | 1254.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene29852 | 0.801612 | 8.30E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene29852 | 0.802621 | 5.14E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene29852 | 0.83067 | 2.58E-55 | -1.69E-46 |
| MS.gene052389 | MS.gene29852 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene29852 | 0.859912 | 2.98E-63 | -1.69E-46 |
| MS.gene05761 | MS.gene29852 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene29852 | 0.800812 | 1.21E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29852 | MS.gene89102 | PPI |
| MS.gene29852 | MS.gene33359 | PPI |
| MS.gene29852 | MS.gene30731 | PPI |
| MS.gene29852 | MS.gene053674 | PPI |
| MS.gene29852 | MS.gene35622 | PPI |
| MS.gene29852 | MS.gene61200 | PPI |
| MS.gene29852 | MS.gene062785 | PPI |
| MS.gene29852 | MS.gene29013 | PPI |
| MS.gene29852 | MS.gene36287 | PPI |
| MS.gene29852 | MS.gene035937 | PPI |
| MS.gene29852 | MS.gene033981 | PPI |
| MS.gene29852 | MS.gene57599 | PPI |
| MS.gene29852 | MS.gene010265 | PPI |
| MS.gene29852 | MS.gene33360 | PPI |
| MS.gene053673 | MS.gene29852 | PPI |
| MS.gene35622 | MS.gene29852 | PPI |
| MS.gene29852 | MS.gene010268 | PPI |
| MS.gene29852 | MS.gene33361 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29852.t1 | MTR_3g073780 | 98.938 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1333 |
| MS.gene29852.t1 | MTR_3g073780 | 99.147 | 586 | 5 | 0 | 1 | 586 | 1 | 586 | 0.0 | 1186 |
| MS.gene29852.t1 | MTR_5g061880 | 84.018 | 657 | 102 | 2 | 4 | 659 | 1 | 655 | 0.0 | 1136 |
| MS.gene29852.t1 | MTR_3g073780 | 99.106 | 559 | 5 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1127 |
| MS.gene29852.t1 | MTR_2g008470 | 70.128 | 626 | 183 | 3 | 30 | 654 | 51 | 673 | 0.0 | 902 |
| MS.gene29852.t1 | MTR_2g008470 | 70.128 | 626 | 183 | 3 | 30 | 654 | 32 | 654 | 0.0 | 901 |
| MS.gene29852.t1 | MTR_1g071530 | 53.096 | 646 | 291 | 4 | 23 | 659 | 3 | 645 | 0.0 | 696 |
| MS.gene29852.t1 | MTR_7g095430 | 52.335 | 621 | 292 | 3 | 33 | 652 | 18 | 635 | 0.0 | 694 |
| MS.gene29852.t1 | MTR_2g102243 | 53.344 | 628 | 289 | 3 | 33 | 659 | 23 | 647 | 0.0 | 694 |
| MS.gene29852.t1 | MTR_4g084620 | 51.411 | 638 | 304 | 5 | 17 | 652 | 1 | 634 | 0.0 | 683 |
| MS.gene29852.t1 | MTR_3g087740 | 53.704 | 648 | 278 | 9 | 11 | 651 | 17 | 649 | 0.0 | 679 |
| MS.gene29852.t1 | MTR_5g061860 | 54.327 | 624 | 269 | 6 | 38 | 651 | 29 | 646 | 0.0 | 678 |
| MS.gene29852.t1 | MTR_4g011970 | 51.823 | 631 | 294 | 4 | 33 | 659 | 30 | 654 | 0.0 | 675 |
| MS.gene29852.t1 | MTR_4g084640 | 50.230 | 651 | 316 | 4 | 9 | 659 | 2 | 644 | 0.0 | 669 |
| MS.gene29852.t1 | MTR_3g073730 | 51.314 | 647 | 290 | 5 | 13 | 651 | 23 | 652 | 0.0 | 664 |
| MS.gene29852.t1 | MTR_7g095430 | 53.514 | 555 | 254 | 3 | 33 | 586 | 18 | 569 | 0.0 | 637 |
| MS.gene29852.t1 | MTR_2g102243 | 54.595 | 555 | 248 | 3 | 33 | 586 | 23 | 574 | 0.0 | 635 |
| MS.gene29852.t1 | MTR_5g061860 | 57.331 | 532 | 212 | 6 | 38 | 559 | 28 | 554 | 0.0 | 608 |
| MS.gene29852.t1 | MTR_6g086170 | 43.680 | 625 | 345 | 4 | 28 | 651 | 5 | 623 | 0.0 | 572 |
| MS.gene29852.t1 | MTR_3g087730 | 41.014 | 651 | 356 | 9 | 9 | 648 | 16 | 649 | 1.86e-173 | 510 |
| MS.gene29852.t1 | MTR_7g022870 | 39.446 | 578 | 336 | 7 | 77 | 651 | 70 | 636 | 1.65e-137 | 419 |
| MS.gene29852.t1 | MTR_7g022870 | 40.351 | 513 | 292 | 7 | 77 | 586 | 70 | 571 | 3.40e-122 | 375 |
| MS.gene29852.t1 | MTR_6g024420 | 48.182 | 110 | 38 | 3 | 260 | 369 | 76 | 166 | 2.41e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29852.t1 | AT1G22150 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| MS.gene29852.t1 | AT1G22150 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| MS.gene29852.t1 | AT1G22150 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| MS.gene29852.t1 | AT1G78000 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| MS.gene29852.t1 | AT1G78000 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| MS.gene29852.t1 | AT1G78000 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| MS.gene29852.t1 | AT4G08620 | 71.589 | 623 | 174 | 2 | 34 | 655 | 24 | 644 | 0.0 | 910 |
| MS.gene29852.t1 | AT1G78000 | 78.462 | 585 | 123 | 2 | 30 | 613 | 25 | 607 | 0.0 | 892 |
| MS.gene29852.t1 | AT1G22150 | 77.002 | 587 | 130 | 4 | 1 | 586 | 1 | 583 | 0.0 | 884 |
| MS.gene29852.t1 | AT1G78000 | 78.853 | 558 | 115 | 2 | 30 | 586 | 25 | 580 | 0.0 | 848 |
| MS.gene29852.t1 | AT1G78000 | 78.481 | 474 | 100 | 1 | 29 | 502 | 24 | 495 | 0.0 | 712 |
| MS.gene29852.t1 | AT3G51895 | 53.215 | 622 | 286 | 4 | 33 | 652 | 65 | 683 | 0.0 | 704 |
| MS.gene29852.t1 | AT3G51895 | 53.215 | 622 | 286 | 4 | 33 | 652 | 20 | 638 | 0.0 | 702 |
| MS.gene29852.t1 | AT3G15990 | 51.675 | 627 | 299 | 3 | 33 | 658 | 27 | 650 | 0.0 | 687 |
| MS.gene29852.t1 | AT1G78000 | 80.984 | 447 | 82 | 2 | 141 | 586 | 1 | 445 | 0.0 | 673 |
| MS.gene29852.t1 | AT5G10180 | 53.333 | 630 | 284 | 6 | 27 | 651 | 48 | 672 | 0.0 | 660 |
| MS.gene29852.t1 | AT1G23090 | 50.641 | 624 | 303 | 4 | 33 | 654 | 4 | 624 | 0.0 | 657 |
| MS.gene29852.t1 | AT4G02700 | 49.114 | 621 | 311 | 4 | 33 | 651 | 10 | 627 | 0.0 | 627 |
| MS.gene29852.t1 | AT1G77990 | 48.476 | 656 | 323 | 6 | 6 | 648 | 10 | 663 | 0.0 | 620 |
| MS.gene29852.t1 | AT5G19600 | 42.543 | 637 | 347 | 7 | 19 | 651 | 2 | 623 | 0.0 | 537 |
| MS.gene29852.t1 | AT1G23090 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 3.92e-174 | 506 |
| MS.gene29852.t1 | AT1G23090 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 3.92e-174 | 506 |
| MS.gene29852.t1 | AT1G23090 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 3.92e-174 | 506 |
| MS.gene29852.t1 | AT3G12520 | 38.581 | 578 | 341 | 7 | 77 | 651 | 47 | 613 | 1.25e-132 | 405 |
| MS.gene29852.t1 | AT3G12520 | 38.581 | 578 | 341 | 7 | 77 | 651 | 63 | 629 | 1.67e-132 | 405 |
| MS.gene29852.t1 | AT5G13550 | 37.688 | 597 | 358 | 7 | 58 | 651 | 57 | 642 | 1.87e-129 | 397 |
| MS.gene29852.t1 | AT3G12520 | 39.463 | 484 | 281 | 6 | 77 | 559 | 63 | 535 | 4.27e-112 | 348 |
Find 107 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCAAGAACTGCTATTT+TGG | 0.159336 | 3.4:+72471948 | MS.gene29852:CDS |
| CAAACTTTACACATCAAATT+TGG | 0.194351 | 3.4:+72472632 | MS.gene29852:CDS |
| TTAATGTCATACAATAAATT+TGG | 0.204828 | 3.4:-72470392 | None:intergenic |
| GCTTGCATGGGAGCATTCTT+TGG | 0.233187 | 3.4:+72471492 | MS.gene29852:CDS |
| TCAAATTTGGCTAACATAAT+TGG | 0.235564 | 3.4:+72472645 | MS.gene29852:CDS |
| TCATATTCCCTATACTTAAC+TGG | 0.244415 | 3.4:+72469303 | MS.gene29852:CDS |
| CTTGCATGGGAGCATTCTTT+GGG | 0.248132 | 3.4:+72471493 | MS.gene29852:CDS |
| GGCAGTGGTTTCTCTCTTGT+TGG | 0.266819 | 3.4:+72469707 | MS.gene29852:CDS |
| CTTGTTTGAGCAGCTTGTTC+TGG | 0.272068 | 3.4:+72472584 | MS.gene29852:intron |
| TTCCCCAAAATAGCAGTTCT+TGG | 0.283487 | 3.4:-72471952 | None:intergenic |
| TCCTTGAATAAGTTCTGTTT+TGG | 0.295462 | 3.4:-72469182 | None:intergenic |
| ACCACTTATTTATGCTTTCA+TGG | 0.312166 | 3.4:+72469653 | MS.gene29852:CDS |
| TATTCTTCTGCATGCGTAAC+AGG | 0.316301 | 3.4:-72469756 | None:intergenic |
| CCCTTTCAGGTTCTTTCTCT+CGG | 0.326604 | 3.4:+72471259 | MS.gene29852:intron |
| CATCAGTCTTGTGGACTATC+AGG | 0.327508 | 3.4:+72471428 | MS.gene29852:CDS |
| TTGGCCTTGTCACTTGTAAT+AGG | 0.331619 | 3.4:-72471933 | None:intergenic |
| CTATCCCATGCTGCTATTGT+CGG | 0.334142 | 3.4:+72470000 | MS.gene29852:CDS |
| ATACTCTAAGCTTGCACATT+TGG | 0.342714 | 3.4:+72469503 | MS.gene29852:CDS |
| TACTAGCTTCTGTGTATTGT+TGG | 0.347401 | 3.4:-72472005 | None:intergenic |
| CATGGGTTCACATCTAGCTT+TGG | 0.355433 | 3.4:-72472717 | None:intergenic |
| GATATCAATGGGGCAATTGC+TGG | 0.356023 | 3.4:-72470529 | None:intergenic |
| GTACCTTTCTTTAACATAGT+TGG | 0.358549 | 3.4:-72472082 | None:intergenic |
| AGAAGAACAAGAAATTCTTC+TGG | 0.361674 | 3.4:+72470503 | MS.gene29852:CDS |
| ATGAAGGATTATCAATTAGA+TGG | 0.377902 | 3.4:+72470972 | MS.gene29852:CDS |
| TGGTCTTTGAAAGATCTTAG+AGG | 0.380869 | 3.4:-72469245 | None:intergenic |
| GCACATTTGGCACCACAGTA+TGG | 0.381293 | 3.4:+72469516 | MS.gene29852:CDS |
| GCAGTGGTTTCTCTCTTGTT+GGG | 0.391026 | 3.4:+72469708 | MS.gene29852:CDS |
| ATTGCAACTTTGTAAGCATA+TGG | 0.407177 | 3.4:-72469155 | None:intergenic |
| CAGCTTGTTCTGGCAAATCC+TGG | 0.413117 | 3.4:+72472594 | MS.gene29852:intron |
| TTCTGCTGTCATCAGTCTTG+TGG | 0.413682 | 3.4:+72471419 | MS.gene29852:CDS |
| TCCAAAACAGAACTTATTCA+AGG | 0.417587 | 3.4:+72469181 | MS.gene29852:CDS |
| TGATATTATCTCCGTGTTGA+AGG | 0.418696 | 3.4:+72470110 | MS.gene29852:CDS |
| AACTGGCAAACTATATTAAT+CGG | 0.422167 | 3.4:+72470340 | MS.gene29852:CDS |
| TTTAAAATTGGCGTCATGGC+AGG | 0.425028 | 3.4:+72470806 | MS.gene29852:CDS |
| ACAGAAGCTAGTAAGGTTCC+AGG | 0.431458 | 3.4:+72472015 | MS.gene29852:CDS |
| GAGATAGCATACTCCATGTT+TGG | 0.433528 | 3.4:-72470148 | None:intergenic |
| TTCTATGACTTCTTGTTATG+TGG | 0.437463 | 3.4:+72471037 | MS.gene29852:CDS |
| TAAATTTCATGAACAGATGA+AGG | 0.439342 | 3.4:-72470755 | None:intergenic |
| ACAATACAACTGATATCAAT+GGG | 0.439415 | 3.4:-72470540 | None:intergenic |
| CAACAGCTAAAGGGTTTCCT+TGG | 0.439994 | 3.4:+72470057 | MS.gene29852:CDS |
| GGGATTACACAAGCAACTCT+TGG | 0.440824 | 3.4:+72469813 | MS.gene29852:CDS |
| AATTGCCCTTCAACAGCTAA+AGG | 0.441884 | 3.4:+72470047 | MS.gene29852:CDS |
| GAAGAACAAGAAATTCTTCT+GGG | 0.444848 | 3.4:+72470504 | MS.gene29852:CDS |
| AAGAACATTTGCATCTATGA+AGG | 0.450445 | 3.4:+72470956 | MS.gene29852:CDS |
| GGAAACCCTTTAGCTGTTGA+AGG | 0.451418 | 3.4:-72470053 | None:intergenic |
| TTCTTTAACATAGTTGGAGT+TGG | 0.452253 | 3.4:-72472076 | None:intergenic |
| AATGATGATGGCGGCGAGAA+TGG | 0.456380 | 3.4:-72471397 | None:intergenic |
| TTTGGCTAACATAATTGGTC+AGG | 0.456815 | 3.4:+72472650 | MS.gene29852:CDS |
| ATTGCCCTTCAACAGCTAAA+GGG | 0.458365 | 3.4:+72470048 | MS.gene29852:CDS |
| TGCAAGTCTTTGCATACCTC+AGG | 0.461632 | 3.4:+72469382 | MS.gene29852:CDS |
| AAGGTAAATCACATAGAGAA+AGG | 0.464306 | 3.4:+72470725 | MS.gene29852:intron |
| ATGGCGGCGAGAATGGCATT+TGG | 0.465915 | 3.4:-72471390 | None:intergenic |
| ACAATACACAGAAGCTAGTA+AGG | 0.466966 | 3.4:+72472008 | MS.gene29852:CDS |
| ACTTCTTGTTATGTGGCAAC+TGG | 0.469483 | 3.4:+72471044 | MS.gene29852:CDS |
| AGTTCTCGCGATATAGCAAT+AGG | 0.473447 | 3.4:+72469678 | MS.gene29852:CDS |
| TTTCTTGCAGAATATTAAGA+TGG | 0.474803 | 3.4:+72472178 | MS.gene29852:intron |
| CGACAATAGCAGCATGGGAT+AGG | 0.479296 | 3.4:-72469999 | None:intergenic |
| CAATATTAGAGACTGCAGTT+TGG | 0.479467 | 3.4:-72471308 | None:intergenic |
| GGATTACACAAGCAACTCTT+GGG | 0.490943 | 3.4:+72469814 | MS.gene29852:CDS |
| ATTAGATGGAAACAGAGAAA+TGG | 0.491879 | 3.4:+72470986 | MS.gene29852:CDS |
| CATATTCCCTATACTTAACT+GGG | 0.493178 | 3.4:+72469304 | MS.gene29852:CDS |
| TTGTCTGTATCTTTATCAGT+TGG | 0.493507 | 3.4:-72469086 | None:intergenic |
| TTATCAGTTGGAGAATCCAT+TGG | 0.494298 | 3.4:-72469074 | None:intergenic |
| GACAATACAACTGATATCAA+TGG | 0.494922 | 3.4:-72470541 | None:intergenic |
| TTGTCTGTCACTGCTGAACC+AGG | 0.503392 | 3.4:-72472612 | None:intergenic |
| CCACTTATTTATGCTTTCAT+GGG | 0.515118 | 3.4:+72469654 | MS.gene29852:CDS |
| AAATGTTCTTCCAATAGCTA+TGG | 0.529144 | 3.4:-72470943 | None:intergenic |
| ACTCCAACTATGTTAAAGAA+AGG | 0.531555 | 3.4:+72472079 | MS.gene29852:CDS |
| GGCAGGCATGATTGCACTGA+CGG | 0.532067 | 3.4:+72470823 | MS.gene29852:CDS |
| AACAGAGAAATGGTAGCGTT+AGG | 0.534101 | 3.4:+72470996 | MS.gene29852:CDS |
| TATGTAACTCTTCAAAGGCA+TGG | 0.541754 | 3.4:-72472394 | None:intergenic |
| AAGAGAGAAACCACTGCCAC+TGG | 0.543890 | 3.4:-72469702 | None:intergenic |
| AGCAATAGGACCAGTGGCAG+TGG | 0.545673 | 3.4:+72469692 | MS.gene29852:CDS |
| TTTAGGGGAGATATAATAGC+TGG | 0.546068 | 3.4:+72469350 | MS.gene29852:CDS |
| TTCAGGTTCTTTCTCTCGGT+CGG | 0.546094 | 3.4:+72471263 | MS.gene29852:intron |
| CCCATGAAAGCATAAATAAG+TGG | 0.547324 | 3.4:-72469654 | None:intergenic |
| AGGTTCTTTCTCTCGGTCGG+CGG | 0.551736 | 3.4:+72471266 | MS.gene29852:intron |
| TCGGCGGTAAATTACATGGC+TGG | 0.554084 | 3.4:+72471282 | MS.gene29852:CDS |
| CAGAATATTAAGATGGCTAA+CGG | 0.557714 | 3.4:+72472185 | MS.gene29852:intron |
| AGGTAAATCACATAGAGAAA+GGG | 0.560126 | 3.4:+72470726 | MS.gene29852:intron |
| GTCACTGTTGATGTCTCCAA+TGG | 0.566938 | 3.4:+72469058 | None:intergenic |
| AGCGGCGATTACCTTGGGAA+AGG | 0.569473 | 3.4:+72470782 | MS.gene29852:CDS |
| TTAGGAACAATGAATGTCGT+TGG | 0.571428 | 3.4:+72471014 | MS.gene29852:CDS |
| GAAACCCTTTAGCTGTTGAA+GGG | 0.577893 | 3.4:-72470052 | None:intergenic |
| ACTTCTATGTAACTCTTCAA+AGG | 0.581904 | 3.4:-72472399 | None:intergenic |
| CAATAAATTTGGCGACCAGA+AGG | 0.585111 | 3.4:-72470381 | None:intergenic |
| AAAACCGACAATAGCAGCAT+GGG | 0.585952 | 3.4:-72470004 | None:intergenic |
| GTATTCTCATCAGCCAAACA+TGG | 0.590091 | 3.4:+72470135 | MS.gene29852:CDS |
| ATGAAAGCATAAATAAGTGG+TGG | 0.604379 | 3.4:-72469651 | None:intergenic |
| ACTCTTACAATCATTACACC+TGG | 0.609301 | 3.4:-72472033 | None:intergenic |
| TCGGTCGGCGGTAAATTACA+TGG | 0.613139 | 3.4:+72471278 | MS.gene29852:CDS |
| ACGGATGAAGAAGCAGTGAA+AGG | 0.618073 | 3.4:+72472204 | MS.gene29852:CDS |
| GATGACAGCAGAAATGATGA+TGG | 0.627258 | 3.4:-72471409 | None:intergenic |
| TTTCTATAGACAGATGTCCC+AGG | 0.630261 | 3.4:-72471979 | None:intergenic |
| TAAAACCGACAATAGCAGCA+TGG | 0.633354 | 3.4:-72470005 | None:intergenic |
| TTGCATGGGAGCATTCTTTG+GGG | 0.638724 | 3.4:+72471494 | MS.gene29852:CDS |
| CGATATAGCAATAGGACCAG+TGG | 0.642615 | 3.4:+72469686 | MS.gene29852:CDS |
| TATTCCCTATACTTAACTGG+GGG | 0.663981 | 3.4:+72469306 | MS.gene29852:CDS |
| ATAACACGCGCAGATAAACA+AGG | 0.670320 | 3.4:+72470580 | MS.gene29852:CDS |
| ATATTCCCTATACTTAACTG+GGG | 0.678687 | 3.4:+72469305 | MS.gene29852:CDS |
| TGAGAATACTGCCTTCAACA+CGG | 0.684095 | 3.4:-72470121 | None:intergenic |
| AGATCCTATTACAAGTGACA+AGG | 0.684935 | 3.4:+72471929 | MS.gene29852:CDS |
| CAACAGCTGCTGCAACAGTG+AGG | 0.697666 | 3.4:-72472683 | None:intergenic |
| GTCTTACATAGTCCATACTG+TGG | 0.710058 | 3.4:-72469528 | None:intergenic |
| GACAGCAGAAATGATGATGG+CGG | 0.713860 | 3.4:-72471406 | None:intergenic |
| CAATACAACTGATATCAATG+GGG | 0.724749 | 3.4:-72470539 | None:intergenic |
| GTTACTGACATCGATACGAG+TGG | 0.726960 | 3.4:+72472368 | MS.gene29852:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAATCTTAAAAAATTTA+GGG | + | chr3.4:72469334-72469353 | MS.gene29852:CDS | 10.0% |
| !!! | TTATTATATCTGAAATATTT+AGG | + | chr3.4:72470433-72470452 | MS.gene29852:intron | 10.0% |
| !! | AACACTTATAAAAAAAATCT+TGG | - | chr3.4:72469568-72469587 | None:intergenic | 15.0% |
| !! | ATATAATAATAAGATGAAGT+AGG | - | chr3.4:72470422-72470441 | None:intergenic | 15.0% |
| !! | GATATAAATTATGATACTAT+AGG | + | chr3.4:72472519-72472538 | MS.gene29852:intron | 15.0% |
| !! | GTTACAATCTTAAAAAATTT+AGG | + | chr3.4:72469333-72469352 | MS.gene29852:CDS | 15.0% |
| !! | TACAATCTTAAAAAATTTAG+GGG | + | chr3.4:72469335-72469354 | MS.gene29852:CDS | 15.0% |
| !! | TATAATAATAAGATGAAGTA+GGG | - | chr3.4:72470421-72470440 | None:intergenic | 15.0% |
| !! | TTAATGTCATACAATAAATT+TGG | - | chr3.4:72470395-72470414 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTATAAGTGTTT+TGG | + | chr3.4:72469569-72469588 | MS.gene29852:intron | 15.0% |
| !! | ATATTTGATGTTCTTATACT+TGG | + | chr3.4:72469460-72469479 | MS.gene29852:intron | 20.0% |
| !! | TGTTATGAATACAAAAAAAG+TGG | - | chr3.4:72470566-72470585 | None:intergenic | 20.0% |
| !! | TTGTTTCAATGTATAAACAA+AGG | - | chr3.4:72472121-72472140 | None:intergenic | 20.0% |
| !!! | ACATTTTAGTTTTAATTCCA+AGG | - | chr3.4:72470077-72470096 | None:intergenic | 20.0% |
| !!! | CTAATTAAACTATTGCATTT+TGG | + | chr3.4:72470909-72470928 | MS.gene29852:intron | 20.0% |
| !!! | GTTCATGAAATTTATTTTAG+CGG | + | chr3.4:72470764-72470783 | MS.gene29852:CDS | 20.0% |
| !!! | TAATATTTAACATTTTGCAG+TGG | + | chr3.4:72470317-72470336 | MS.gene29852:intron | 20.0% |
| !!! | TGGTAGGAAATTTTAATATT+AGG | - | chr3.4:72470260-72470279 | None:intergenic | 20.0% |
| !!! | TTATACTTGGTTTGAAAAAT+AGG | + | chr3.4:72469473-72469492 | MS.gene29852:intron | 20.0% |
| !!! | TTCATACATCTACAATTTTA+TGG | + | chr3.4:72471154-72471173 | MS.gene29852:intron | 20.0% |
| ! | AACTGGCAAACTATATTAAT+CGG | + | chr3.4:72470340-72470359 | MS.gene29852:CDS | 25.0% |
| ! | ACAATACAACTGATATCAAT+GGG | - | chr3.4:72470543-72470562 | None:intergenic | 25.0% |
| ! | AGCATAGTATAACTAAGATT+TGG | - | chr3.4:72471565-72471584 | None:intergenic | 25.0% |
| ! | AGTATTAATCAGAATGTGAA+TGG | - | chr3.4:72470635-72470654 | None:intergenic | 25.0% |
| ! | AGTCTAAATCAAATTACTCA+AGG | - | chr3.4:72472321-72472340 | None:intergenic | 25.0% |
| ! | ATAATAAAGTACATAGACTC+CGG | - | chr3.4:72471740-72471759 | None:intergenic | 25.0% |
| ! | ATATCACAGCAATTTAAACA+AGG | + | chr3.4:72471789-72471808 | MS.gene29852:intron | 25.0% |
| ! | ATGAAGGATTATCAATTAGA+TGG | + | chr3.4:72470972-72470991 | MS.gene29852:CDS | 25.0% |
| ! | CAAACTTTACACATCAAATT+TGG | + | chr3.4:72472632-72472651 | MS.gene29852:CDS | 25.0% |
| ! | CAACCTTAAATTTAAAGACT+AGG | + | chr3.4:72471642-72471661 | MS.gene29852:intron | 25.0% |
| ! | TAAATTTCATGAACAGATGA+AGG | - | chr3.4:72470758-72470777 | None:intergenic | 25.0% |
| ! | TAGAAAACTGTTGAAGTAAA+TGG | - | chr3.4:72470892-72470911 | None:intergenic | 25.0% |
| ! | TATGAGGCTAAAACAAATTA+AGG | - | chr3.4:72472296-72472315 | None:intergenic | 25.0% |
| ! | TCAAAAATTGAATTCTTGTG+TGG | - | chr3.4:72472236-72472255 | None:intergenic | 25.0% |
| ! | TCAAATTTGGCTAACATAAT+TGG | + | chr3.4:72472645-72472664 | MS.gene29852:CDS | 25.0% |
| ! | TCTCAAGAAAAAGTTCAAAT+TGG | - | chr3.4:72472145-72472164 | None:intergenic | 25.0% |
| ! | TGATGATCTTATAACTGAAT+CGG | + | chr3.4:72469928-72469947 | MS.gene29852:intron | 25.0% |
| ! | TGGTTTGAAAAATAGGATAT+TGG | + | chr3.4:72469480-72469499 | MS.gene29852:intron | 25.0% |
| ! | TGTCAAAGTAATTCCTAATA+GGG | + | chr3.4:72471591-72471610 | MS.gene29852:intron | 25.0% |
| ! | TTGTCAAAGTAATTCCTAAT+AGG | + | chr3.4:72471590-72471609 | MS.gene29852:intron | 25.0% |
| ! | TTTCAATGTATAAACAAAGG+AGG | - | chr3.4:72472118-72472137 | None:intergenic | 25.0% |
| ! | TTTCTTGCAGAATATTAAGA+TGG | + | chr3.4:72472178-72472197 | MS.gene29852:intron | 25.0% |
| !! | AGTCCTAGTCTTTAAATTTA+AGG | - | chr3.4:72471648-72471667 | None:intergenic | 25.0% |
| !! | ATGTTTCTTTTACAGTGTAT+TGG | - | chr3.4:72469211-72469230 | None:intergenic | 25.0% |
| !! | CTAGTCTTTAAATTTAAGGT+TGG | - | chr3.4:72471644-72471663 | None:intergenic | 25.0% |
| !! | TTTGGAGTGTATTTAAAAAG+AGG | - | chr3.4:72471375-72471394 | None:intergenic | 25.0% |
| !!! | ACATCAAAAAAGTTGATACT+TGG | + | chr3.4:72469272-72469291 | MS.gene29852:CDS | 25.0% |
| !!! | ACTATTGCATTTTGGTTTTT+AGG | + | chr3.4:72470917-72470936 | MS.gene29852:intron | 25.0% |
| !!! | AGGAAATTTTAATATTAGGC+AGG | - | chr3.4:72470256-72470275 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTGTGTTGATTA+GGG | + | chr3.4:72470478-72470497 | MS.gene29852:intron | 25.0% |
| !!! | CAGACAACAGTTTTTAATTT+CGG | + | chr3.4:72471106-72471125 | MS.gene29852:intron | 25.0% |
| !!! | GGAAATTTTAATATTAGGCA+GGG | - | chr3.4:72470255-72470274 | None:intergenic | 25.0% |
| !!! | TATTTCATGTTGTGTTGATT+AGG | + | chr3.4:72470477-72470496 | MS.gene29852:intron | 25.0% |
| !!! | TCAACTTTTTTGATGTACTT+TGG | - | chr3.4:72469268-72469287 | None:intergenic | 25.0% |
| AAATGTTCTTCCAATAGCTA+TGG | - | chr3.4:72470946-72470965 | None:intergenic | 30.0% | |
| AAGAACATTTGCATCTATGA+AGG | + | chr3.4:72470956-72470975 | MS.gene29852:CDS | 30.0% | |
| AAGGTAAATCACATAGAGAA+AGG | + | chr3.4:72470725-72470744 | MS.gene29852:intron | 30.0% | |
| ACAAAGCTTGAATCTGTAAA+AGG | - | chr3.4:72469630-72469649 | None:intergenic | 30.0% | |
| ACCACTTATTTATGCTTTCA+TGG | + | chr3.4:72469653-72469672 | MS.gene29852:CDS | 30.0% | |
| ACTCCAACTATGTTAAAGAA+AGG | + | chr3.4:72472079-72472098 | MS.gene29852:CDS | 30.0% | |
| ACTTCTATGTAACTCTTCAA+AGG | - | chr3.4:72472402-72472421 | None:intergenic | 30.0% | |
| AGAAGAACAAGAAATTCTTC+TGG | + | chr3.4:72470503-72470522 | MS.gene29852:CDS | 30.0% | |
| AGATACAGACAAAAACAAGA+TGG | + | chr3.4:72469097-72469116 | MS.gene29852:CDS | 30.0% | |
| AGGTAAATCACATAGAGAAA+GGG | + | chr3.4:72470726-72470745 | MS.gene29852:intron | 30.0% | |
| ATATTCCCTATACTTAACTG+GGG | + | chr3.4:72469305-72469324 | MS.gene29852:CDS | 30.0% | |
| ATTAGATGGAAACAGAGAAA+TGG | + | chr3.4:72470986-72471005 | MS.gene29852:CDS | 30.0% | |
| ATTGCAACTTTGTAAGCATA+TGG | - | chr3.4:72469158-72469177 | None:intergenic | 30.0% | |
| ATTGTGATTATATGTTGCAG+CGG | + | chr3.4:72472346-72472365 | MS.gene29852:intron | 30.0% | |
| CAAAATTAATCATGTCTGCT+AGG | + | chr3.4:72472447-72472466 | MS.gene29852:intron | 30.0% | |
| CAAAGCTTGAATCTGTAAAA+GGG | - | chr3.4:72469629-72469648 | None:intergenic | 30.0% | |
| CAAATTACTCAAGGAATATG+AGG | - | chr3.4:72472312-72472331 | None:intergenic | 30.0% | |
| CAATACAACTGATATCAATG+GGG | - | chr3.4:72470542-72470561 | None:intergenic | 30.0% | |
| CAGAATATTAAGATGGCTAA+CGG | + | chr3.4:72472185-72472204 | MS.gene29852:intron | 30.0% | |
| CATATGTATATGTAGAAGCT+TGG | + | chr3.4:72472478-72472497 | MS.gene29852:intron | 30.0% | |
| CATATTCCCTATACTTAACT+GGG | + | chr3.4:72469304-72469323 | MS.gene29852:CDS | 30.0% | |
| CCACTTATTTATGCTTTCAT+GGG | + | chr3.4:72469654-72469673 | MS.gene29852:CDS | 30.0% | |
| GAAGAACAAGAAATTCTTCT+GGG | + | chr3.4:72470504-72470523 | MS.gene29852:CDS | 30.0% | |
| GACAATACAACTGATATCAA+TGG | - | chr3.4:72470544-72470563 | None:intergenic | 30.0% | |
| GATTTACCTTCACATATCAA+TGG | - | chr3.4:72470715-72470734 | None:intergenic | 30.0% | |
| GTACCTTTCTTTAACATAGT+TGG | - | chr3.4:72472085-72472104 | None:intergenic | 30.0% | |
| GTCAAAGTAATTCCTAATAG+GGG | + | chr3.4:72471592-72471611 | MS.gene29852:intron | 30.0% | |
| TCAAACAAGTAACACATTCT+TGG | - | chr3.4:72472573-72472592 | None:intergenic | 30.0% | |
| TCATAAGTCAAAATTACCTG+AGG | - | chr3.4:72469401-72469420 | None:intergenic | 30.0% | |
| TCATATTCCCTATACTTAAC+TGG | + | chr3.4:72469303-72469322 | MS.gene29852:CDS | 30.0% | |
| TCCAAAACAGAACTTATTCA+AGG | + | chr3.4:72469181-72469200 | MS.gene29852:CDS | 30.0% | |
| TGAAACCTGTCACAAAAATA+AGG | - | chr3.4:72471896-72471915 | None:intergenic | 30.0% | |
| TTCTGTCAAAAAACCAGATT+AGG | + | chr3.4:72469961-72469980 | MS.gene29852:intron | 30.0% | |
| TTCTTTAACATAGTTGGAGT+TGG | - | chr3.4:72472079-72472098 | None:intergenic | 30.0% | |
| TTGTCTGTATCTTTATCAGT+TGG | - | chr3.4:72469089-72469108 | None:intergenic | 30.0% | |
| TTTAAAGACTAGGACTAAGT+AGG | + | chr3.4:72471652-72471671 | MS.gene29852:intron | 30.0% | |
| ! | ATGAAAGCATAAATAAGTGG+TGG | - | chr3.4:72469654-72469673 | None:intergenic | 30.0% |
| ! | TCCTTGAATAAGTTCTGTTT+TGG | - | chr3.4:72469185-72469204 | None:intergenic | 30.0% |
| ! | TTCTATGACTTCTTGTTATG+TGG | + | chr3.4:72471037-72471056 | MS.gene29852:CDS | 30.0% |
| ! | TTTTGACCATTGATATGTGA+AGG | + | chr3.4:72470706-72470725 | MS.gene29852:intron | 30.0% |
| !! | GGTCAAAAACTTTAGTTCTA+TGG | - | chr3.4:72470694-72470713 | None:intergenic | 30.0% |
| !! | TCTTGAAAAAAGAAGTGTTC+AGG | + | chr3.4:72472421-72472440 | MS.gene29852:CDS | 30.0% |
| !! | TTGAATAAGTTCTGTTTTGG+AGG | - | chr3.4:72469182-72469201 | None:intergenic | 30.0% |
| !!! | CAATTTTAAAACCTTTCCCA+AGG | - | chr3.4:72470796-72470815 | None:intergenic | 30.0% |
| !!! | CTTGGGAAAGGTTTTAAAAT+TGG | + | chr3.4:72470794-72470813 | MS.gene29852:CDS | 30.0% |
| ACAATACACAGAAGCTAGTA+AGG | + | chr3.4:72472008-72472027 | MS.gene29852:CDS | 35.0% | |
| ACTCTTACAATCATTACACC+TGG | - | chr3.4:72472036-72472055 | None:intergenic | 35.0% | |
| AGATCCTATTACAAGTGACA+AGG | + | chr3.4:72471929-72471948 | MS.gene29852:CDS | 35.0% | |
| ATACTCTAAGCTTGCACATT+TGG | + | chr3.4:72469503-72469522 | MS.gene29852:CDS | 35.0% | |
| CAATATTAGAGACTGCAGTT+TGG | - | chr3.4:72471311-72471330 | None:intergenic | 35.0% | |
| GGAGAAATACTCATAAAGAG+AGG | - | chr3.4:72470871-72470890 | None:intergenic | 35.0% | |
| GTCAATCAAGAATCCTAATC+TGG | - | chr3.4:72469977-72469996 | None:intergenic | 35.0% | |
| TATGTAACTCTTCAAAGGCA+TGG | - | chr3.4:72472397-72472416 | None:intergenic | 35.0% | |
| TATTCCCTATACTTAACTGG+GGG | + | chr3.4:72469306-72469325 | MS.gene29852:CDS | 35.0% | |
| TGATATTATCTCCGTGTTGA+AGG | + | chr3.4:72470110-72470129 | MS.gene29852:CDS | 35.0% | |
| TGTAATCCCAGCAAAAAAAG+TGG | - | chr3.4:72469802-72469821 | None:intergenic | 35.0% | |
| TTAGGAACAATGAATGTCGT+TGG | + | chr3.4:72471014-72471033 | MS.gene29852:CDS | 35.0% | |
| TTATCAGTTGGAGAATCCAT+TGG | - | chr3.4:72469077-72469096 | None:intergenic | 35.0% | |
| TTTAGGGGAGATATAATAGC+TGG | + | chr3.4:72469350-72469369 | MS.gene29852:CDS | 35.0% | |
| TTTGGCTAACATAATTGGTC+AGG | + | chr3.4:72472650-72472669 | MS.gene29852:CDS | 35.0% | |
| ! | CCCATGAAAGCATAAATAAG+TGG | - | chr3.4:72469657-72469676 | None:intergenic | 35.0% |
| ! | TACTAGCTTCTGTGTATTGT+TGG | - | chr3.4:72472008-72472027 | None:intergenic | 35.0% |
| ! | TGGTCTTTGAAAGATCTTAG+AGG | - | chr3.4:72469248-72469267 | None:intergenic | 35.0% |
| ! | TTAACATTTTGCAGTGGAAC+TGG | + | chr3.4:72470323-72470342 | MS.gene29852:intron | 35.0% |
| !! | ATCAGGCAGCAATTTTGATA+TGG | + | chr3.4:72471445-72471464 | MS.gene29852:CDS | 35.0% |
| !! | ATTCGATTTTGTTGCTTGCA+TGG | + | chr3.4:72471479-72471498 | MS.gene29852:CDS | 35.0% |
| !! | TTCGATTTTGTTGCTTGCAT+GGG | + | chr3.4:72471480-72471499 | MS.gene29852:CDS | 35.0% |
| !! | TTTTAGGAAGCCATAGCTAT+TGG | + | chr3.4:72470933-72470952 | MS.gene29852:intron | 35.0% |
| !!! | AAGCTTTTTGAGTTTCCTTC+TGG | + | chr3.4:72470366-72470385 | MS.gene29852:CDS | 35.0% |
| !!! | AGGTTTTAAAATTGGCGTCA+TGG | + | chr3.4:72470802-72470821 | MS.gene29852:CDS | 35.0% |
| !!! | GATCGATTTTTTTCCCTTTC+AGG | + | chr3.4:72471246-72471265 | MS.gene29852:intron | 35.0% |
| !!! | TGAGACCTTATTTTTGTGAC+AGG | + | chr3.4:72471888-72471907 | MS.gene29852:intron | 35.0% |
| !!! | TTACTGCCACTTTTTTTGCT+GGG | + | chr3.4:72469793-72469812 | MS.gene29852:CDS | 35.0% |
| !!! | TTTACTGCCACTTTTTTTGC+TGG | + | chr3.4:72469792-72469811 | MS.gene29852:CDS | 35.0% |
| AAAACCGACAATAGCAGCAT+GGG | - | chr3.4:72470007-72470026 | None:intergenic | 40.0% | |
| AATTGCCCTTCAACAGCTAA+AGG | + | chr3.4:72470047-72470066 | MS.gene29852:CDS | 40.0% | |
| AGATTCTCGCATAGCATAAC+CGG | + | chr3.4:72471718-72471737 | MS.gene29852:intron | 40.0% | |
| AGTGTAACATTAGTAGCAGC+TGG | - | chr3.4:72469895-72469914 | None:intergenic | 40.0% | |
| AGTTCTCGCGATATAGCAAT+AGG | + | chr3.4:72469678-72469697 | MS.gene29852:CDS | 40.0% | |
| ATAACACGCGCAGATAAACA+AGG | + | chr3.4:72470580-72470599 | MS.gene29852:CDS | 40.0% | |
| ATTGCCCTTCAACAGCTAAA+GGG | + | chr3.4:72470048-72470067 | MS.gene29852:CDS | 40.0% | |
| CAATAAATTTGGCGACCAGA+AGG | - | chr3.4:72470384-72470403 | None:intergenic | 40.0% | |
| GAAACCCTTTAGCTGTTGAA+GGG | - | chr3.4:72470055-72470074 | None:intergenic | 40.0% | |
| GAGATAGCATACTCCATGTT+TGG | - | chr3.4:72470151-72470170 | None:intergenic | 40.0% | |
| GATGACAGCAGAAATGATGA+TGG | - | chr3.4:72471412-72471431 | None:intergenic | 40.0% | |
| GCTGGTAGTACATGTATATC+CGG | - | chr3.4:72469877-72469896 | None:intergenic | 40.0% | |
| GGATTACACAAGCAACTCTT+GGG | + | chr3.4:72469814-72469833 | MS.gene29852:CDS | 40.0% | |
| GTATTCTCATCAGCCAAACA+TGG | + | chr3.4:72470135-72470154 | MS.gene29852:CDS | 40.0% | |
| GTCTTACATAGTCCATACTG+TGG | - | chr3.4:72469531-72469550 | None:intergenic | 40.0% | |
| GTCTTATGTACACCCCTATT+AGG | - | chr3.4:72471607-72471626 | None:intergenic | 40.0% | |
| TAAAACCGACAATAGCAGCA+TGG | - | chr3.4:72470008-72470027 | None:intergenic | 40.0% | |
| TATTCTTCTGCATGCGTAAC+AGG | - | chr3.4:72469759-72469778 | None:intergenic | 40.0% | |
| TGAGAATACTGCCTTCAACA+CGG | - | chr3.4:72470124-72470143 | None:intergenic | 40.0% | |
| TTCCCCAAAATAGCAGTTCT+TGG | - | chr3.4:72471955-72471974 | None:intergenic | 40.0% | |
| TTCTCCCCCAGTTAAGTATA+GGG | - | chr3.4:72469313-72469332 | None:intergenic | 40.0% | |
| TTGCAAACATACACACTGGT+AGG | - | chr3.4:72470276-72470295 | None:intergenic | 40.0% | |
| TTTCTATAGACAGATGTCCC+AGG | - | chr3.4:72471982-72472001 | None:intergenic | 40.0% | |
| ! | AACAGAGAAATGGTAGCGTT+AGG | + | chr3.4:72470996-72471015 | MS.gene29852:CDS | 40.0% |
| ! | AAGCAACTCTTGGGATTTTC+AGG | + | chr3.4:72469823-72469842 | MS.gene29852:CDS | 40.0% |
| ! | ACTTCTTGTTATGTGGCAAC+TGG | + | chr3.4:72471044-72471063 | MS.gene29852:CDS | 40.0% |
| ! | GTTTTCGTCTCTGTTGAGAT+AGG | + | chr3.4:72471519-72471538 | MS.gene29852:CDS | 40.0% |
| ! | TTTAAAATTGGCGTCATGGC+AGG | + | chr3.4:72470806-72470825 | MS.gene29852:CDS | 40.0% |
| !! | AAGGCCAAGAACTGCTATTT+TGG | + | chr3.4:72471948-72471967 | MS.gene29852:CDS | 40.0% |
| !! | ATTTTAGCGGCGATTACCTT+GGG | + | chr3.4:72470777-72470796 | MS.gene29852:CDS | 40.0% |
| !! | CTATTTTGGGGAAGATTCCT+GGG | + | chr3.4:72471962-72471981 | MS.gene29852:CDS | 40.0% |
| !! | TTGGCCTTGTCACTTGTAAT+AGG | - | chr3.4:72471936-72471955 | None:intergenic | 40.0% |
| !!! | AGGCCAAGAACTGCTATTTT+GGG | + | chr3.4:72471949-72471968 | MS.gene29852:CDS | 40.0% |
| !!! | CTGCTATTGTCGGTTTTATG+GGG | + | chr3.4:72470010-72470029 | MS.gene29852:CDS | 40.0% |
| !!! | GCTGCTATTGTCGGTTTTAT+GGG | + | chr3.4:72470009-72470028 | MS.gene29852:CDS | 40.0% |
| !!! | TATTTTAGCGGCGATTACCT+TGG | + | chr3.4:72470776-72470795 | MS.gene29852:CDS | 40.0% |
| !!! | TGCTATTGTCGGTTTTATGG+GGG | + | chr3.4:72470011-72470030 | MS.gene29852:CDS | 40.0% |
| !!! | TGCTGCTATTGTCGGTTTTA+TGG | + | chr3.4:72470008-72470027 | MS.gene29852:CDS | 40.0% |
| ACAGAAGCTAGTAAGGTTCC+AGG | + | chr3.4:72472015-72472034 | MS.gene29852:CDS | 45.0% | |
| ACCGAGAGAAAGAACCTGAA+AGG | - | chr3.4:72471263-72471282 | None:intergenic | 45.0% | |
| ACGGATGAAGAAGCAGTGAA+AGG | + | chr3.4:72472204-72472223 | MS.gene29852:CDS | 45.0% | |
| CAACAGCTAAAGGGTTTCCT+TGG | + | chr3.4:72470057-72470076 | MS.gene29852:CDS | 45.0% | |
| CCGAGAGAAAGAACCTGAAA+GGG | - | chr3.4:72471262-72471281 | None:intergenic | 45.0% | |
| CGATATAGCAATAGGACCAG+TGG | + | chr3.4:72469686-72469705 | MS.gene29852:CDS | 45.0% | |
| CTATCCCATGCTGCTATTGT+CGG | + | chr3.4:72470000-72470019 | MS.gene29852:CDS | 45.0% | |
| CTTCTCCCCCAGTTAAGTAT+AGG | - | chr3.4:72469314-72469333 | None:intergenic | 45.0% | |
| GATATCAATGGGGCAATTGC+TGG | - | chr3.4:72470532-72470551 | None:intergenic | 45.0% | |
| GCACTTGCAAACATACACAC+TGG | - | chr3.4:72470280-72470299 | None:intergenic | 45.0% | |
| GCAGTGGTTTCTCTCTTGTT+GGG | + | chr3.4:72469708-72469727 | MS.gene29852:CDS | 45.0% | |
| GGAAACCCTTTAGCTGTTGA+AGG | - | chr3.4:72470056-72470075 | None:intergenic | 45.0% | |
| GGGATTACACAAGCAACTCT+TGG | + | chr3.4:72469813-72469832 | MS.gene29852:CDS | 45.0% | |
| GTTACTGACATCGATACGAG+TGG | + | chr3.4:72472368-72472387 | MS.gene29852:CDS | 45.0% | |
| TGCAAGTCTTTGCATACCTC+AGG | + | chr3.4:72469382-72469401 | MS.gene29852:CDS | 45.0% | |
| TTCTGCTGTCATCAGTCTTG+TGG | + | chr3.4:72471419-72471438 | MS.gene29852:CDS | 45.0% | |
| ! | CATCAGTCTTGTGGACTATC+AGG | + | chr3.4:72471428-72471447 | MS.gene29852:CDS | 45.0% |
| ! | CATGGGTTCACATCTAGCTT+TGG | - | chr3.4:72472720-72472739 | None:intergenic | 45.0% |
| ! | CTTGTTTGAGCAGCTTGTTC+TGG | + | chr3.4:72472584-72472603 | MS.gene29852:intron | 45.0% |
| ! | TTCAGGTTCTTTCTCTCGGT+CGG | + | chr3.4:72471263-72471282 | MS.gene29852:intron | 45.0% |
| !! | CCCTTTCAGGTTCTTTCTCT+CGG | + | chr3.4:72471259-72471278 | MS.gene29852:intron | 45.0% |
| !! | CTTGCATGGGAGCATTCTTT+GGG | + | chr3.4:72471493-72471512 | MS.gene29852:CDS | 45.0% |
| !! | GACAGCAGAAATGATGATGG+CGG | - | chr3.4:72471409-72471428 | None:intergenic | 45.0% |
| !! | GCTATTTTGGGGAAGATTCC+TGG | + | chr3.4:72471961-72471980 | MS.gene29852:CDS | 45.0% |
| !! | TTGCATGGGAGCATTCTTTG+GGG | + | chr3.4:72471494-72471513 | MS.gene29852:CDS | 45.0% |
| !!! | GCTATTGTCGGTTTTATGGG+GGG | + | chr3.4:72470012-72470031 | MS.gene29852:CDS | 45.0% |
| !!! | GGCCAAGAACTGCTATTTTG+GGG | + | chr3.4:72471950-72471969 | MS.gene29852:CDS | 45.0% |
| AAGAGAGAAACCACTGCCAC+TGG | - | chr3.4:72469705-72469724 | None:intergenic | 50.0% | |
| CGACAATAGCAGCATGGGAT+AGG | - | chr3.4:72470002-72470021 | None:intergenic | 50.0% | |
| GCACATTTGGCACCACAGTA+TGG | + | chr3.4:72469516-72469535 | MS.gene29852:CDS | 50.0% | |
| GGCAGTGGTTTCTCTCTTGT+TGG | + | chr3.4:72469707-72469726 | MS.gene29852:CDS | 50.0% | |
| TCGGCGGTAAATTACATGGC+TGG | + | chr3.4:72471282-72471301 | MS.gene29852:CDS | 50.0% | |
| TCGGTCGGCGGTAAATTACA+TGG | + | chr3.4:72471278-72471297 | MS.gene29852:CDS | 50.0% | |
| TTGTCTGTCACTGCTGAACC+AGG | - | chr3.4:72472615-72472634 | None:intergenic | 50.0% | |
| ! | CAGCTTGTTCTGGCAAATCC+TGG | + | chr3.4:72472594-72472613 | MS.gene29852:intron | 50.0% |
| ! | CGAAGCACTAACACAGACAC+CGG | + | chr3.4:72469855-72469874 | MS.gene29852:intron | 50.0% |
| !! | AATGATGATGGCGGCGAGAA+TGG | - | chr3.4:72471400-72471419 | None:intergenic | 50.0% |
| !! | GCTTGCATGGGAGCATTCTT+TGG | + | chr3.4:72471492-72471511 | MS.gene29852:CDS | 50.0% |
| AGCAATAGGACCAGTGGCAG+TGG | + | chr3.4:72469692-72469711 | MS.gene29852:CDS | 55.0% | |
| AGCGGCGATTACCTTGGGAA+AGG | + | chr3.4:72470782-72470801 | MS.gene29852:CDS | 55.0% | |
| AGGTTCTTTCTCTCGGTCGG+CGG | + | chr3.4:72471266-72471285 | MS.gene29852:intron | 55.0% | |
| ATGGCGGCGAGAATGGCATT+TGG | - | chr3.4:72471393-72471412 | None:intergenic | 55.0% | |
| CAACAGCTGCTGCAACAGTG+AGG | - | chr3.4:72472686-72472705 | None:intergenic | 55.0% | |
| GGCAGGCATGATTGCACTGA+CGG | + | chr3.4:72470823-72470842 | MS.gene29852:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 72469068 | 72472740 | 72469068 | ID=MS.gene29852 |
| chr3.4 | mRNA | 72469068 | 72472740 | 72469068 | ID=MS.gene29852.t1;Parent=MS.gene29852 |
| chr3.4 | exon | 72469068 | 72469403 | 72469068 | ID=MS.gene29852.t1.exon1;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72469068 | 72469403 | 72469068 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72469495 | 72469543 | 72469495 | ID=MS.gene29852.t1.exon2;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72469495 | 72469543 | 72469495 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72469637 | 72469844 | 72469637 | ID=MS.gene29852.t1.exon3;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72469637 | 72469844 | 72469637 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72469978 | 72470158 | 72469978 | ID=MS.gene29852.t1.exon4;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72469978 | 72470158 | 72469978 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72470337 | 72470402 | 72470337 | ID=MS.gene29852.t1.exon5;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72470337 | 72470402 | 72470337 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72470499 | 72470612 | 72470499 | ID=MS.gene29852.t1.exon6;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72470499 | 72470612 | 72470499 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72470728 | 72470844 | 72470728 | ID=MS.gene29852.t1.exon7;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72470728 | 72470844 | 72470728 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72470939 | 72471065 | 72470939 | ID=MS.gene29852.t1.exon8;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72470939 | 72471065 | 72470939 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72471268 | 72471554 | 72471268 | ID=MS.gene29852.t1.exon9;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72471268 | 72471554 | 72471268 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72471910 | 72472100 | 72471910 | ID=MS.gene29852.t1.exon10;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72471910 | 72472100 | 72471910 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72472188 | 72472270 | 72472188 | ID=MS.gene29852.t1.exon11;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72472188 | 72472270 | 72472188 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72472366 | 72472442 | 72472366 | ID=MS.gene29852.t1.exon12;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72472366 | 72472442 | 72472366 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| chr3.4 | exon | 72472597 | 72472740 | 72472597 | ID=MS.gene29852.t1.exon13;Parent=MS.gene29852.t1 |
| chr3.4 | CDS | 72472597 | 72472740 | 72472597 | ID=cds.MS.gene29852.t1;Parent=MS.gene29852.t1 |
| Gene Sequence |
| Protein sequence |
