AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33360.t1 MTR_4g011970 99.388 654 4 0 1 654 1 654 0.0 1314
MS.gene33360.t1 MTR_2g102243 82.416 654 106 2 3 654 1 647 0.0 1113
MS.gene33360.t1 MTR_2g102243 82.423 586 94 2 3 586 1 579 0.0 996
MS.gene33360.t1 MTR_4g084620 63.854 628 224 2 27 653 15 640 0.0 829
MS.gene33360.t1 MTR_4g084640 60.276 652 246 3 4 654 5 644 0.0 799
MS.gene33360.t1 MTR_7g095430 56.543 619 269 0 29 647 17 635 0.0 722
MS.gene33360.t1 MTR_1g071530 56.390 626 273 0 29 654 20 645 0.0 716
MS.gene33360.t1 MTR_5g061880 53.195 626 292 1 30 654 30 655 0.0 694
MS.gene33360.t1 MTR_2g008470 54.531 618 279 2 28 644 52 668 0.0 667
MS.gene33360.t1 MTR_2g008470 54.531 618 279 2 28 644 33 649 0.0 667
MS.gene33360.t1 MTR_7g095430 57.581 554 235 0 29 582 17 570 0.0 662
MS.gene33360.t1 MTR_3g073780 51.664 631 295 4 30 654 33 659 0.0 653
MS.gene33360.t1 MTR_6g086170 48.304 619 313 3 28 643 6 620 0.0 601
MS.gene33360.t1 MTR_3g073780 54.104 536 243 2 30 562 33 568 0.0 595
MS.gene33360.t1 MTR_3g073780 53.890 527 240 2 30 553 33 559 0.0 579
MS.gene33360.t1 MTR_3g087740 46.951 656 335 7 3 649 1 652 0.0 579
MS.gene33360.t1 MTR_5g061860 48.237 624 300 7 42 649 33 649 0.0 563
MS.gene33360.t1 MTR_3g073730 45.950 605 319 3 58 654 56 660 9.77e-179 523
MS.gene33360.t1 MTR_5g061860 49.811 528 243 6 42 553 33 554 2.37e-169 495
MS.gene33360.t1 MTR_3g087730 42.488 619 336 9 46 649 42 655 1.27e-159 474
MS.gene33360.t1 MTR_7g022870 34.833 600 351 12 61 643 57 633 2.33e-115 361
MS.gene33360.t1 MTR_7g022870 37.278 507 297 10 61 562 57 547 8.61e-106 332
MS.gene33360.t1 MTR_6g024420 34.091 132 68 3 232 363 54 166 9.84e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33360.t1 AT3G15990 74.390 656 163 2 1 654 1 653 0.0 1011
MS.gene33360.t1 AT1G23090 63.826 622 224 1 27 647 1 622 0.0 822
MS.gene33360.t1 AT3G51895 57.075 629 266 2 30 654 20 648 0.0 749
MS.gene33360.t1 AT3G51895 57.075 629 266 2 30 654 65 693 0.0 749
MS.gene33360.t1 AT4G02700 54.531 618 280 1 28 644 8 625 0.0 658
MS.gene33360.t1 AT4G08620 51.669 629 303 1 26 653 19 647 0.0 648
MS.gene33360.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33360.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33360.t1 AT1G78000 53.994 626 286 2 19 643 18 642 0.0 643
MS.gene33360.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33360.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33360.t1 AT1G22150 52.031 640 306 1 9 647 10 649 0.0 639
MS.gene33360.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33360.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33360.t1 AT1G23090 63.061 490 180 1 159 647 1 490 0.0 634
MS.gene33360.t1 AT1G78000 54.315 591 268 2 19 608 18 607 0.0 613
MS.gene33360.t1 AT5G19600 47.674 602 305 3 43 643 28 620 0.0 593
MS.gene33360.t1 AT1G78000 54.787 564 253 2 19 581 18 580 0.0 588
MS.gene33360.t1 AT1G22150 52.613 574 271 1 9 581 10 583 0.0 584
MS.gene33360.t1 AT5G10180 47.876 612 296 6 54 643 59 669 0.0 544
MS.gene33360.t1 AT1G77990 48.611 576 291 3 73 643 88 663 0.0 541
MS.gene33360.t1 AT1G78000 55.741 479 210 2 19 496 18 495 2.52e-170 496
MS.gene33360.t1 AT1G78000 55.730 445 196 1 138 581 1 445 1.21e-157 462
MS.gene33360.t1 AT3G12520 35.364 591 372 9 55 643 28 610 2.42e-118 368
MS.gene33360.t1 AT3G12520 35.364 591 372 9 55 643 44 626 2.84e-118 368
MS.gene33360.t1 AT5G13550 35.108 601 360 12 55 643 57 639 6.29e-115 360
MS.gene33360.t1 AT3G12520 37.400 500 304 8 55 553 44 535 1.46e-106 333

Find 124 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCATGAGTCAAATATTT+TGG 0.137024 4.2:-88188460 MS.gene33360:CDS
GATTCCTGCATTTATCATTT+TGG 0.179334 4.2:-88189365 MS.gene33360:CDS
TCCAATTCTCTATCTTAAAT+TGG 0.180771 4.2:-88192812 MS.gene33360:CDS
GCAAACTTGCCACCAATTAT+TGG 0.190086 4.2:-88193066 MS.gene33360:CDS
TCCTTATAGCTTCTTTATAT+TGG 0.203302 4.2:+88189386 None:intergenic
GCTGAAATCCAGAATAATTT+TGG 0.218068 4.2:+88190964 None:intergenic
TAGGCCAAACACATCGGTTT+TGG 0.225950 4.2:-88189446 MS.gene33360:CDS
TGAAGAGGCCAAAATTATTC+TGG 0.237606 4.2:-88190972 MS.gene33360:CDS
CTTTATATTGGTTTAGGTTA+TGG 0.240443 4.2:+88189398 None:intergenic
TTCACTGCCACTTTCTTTGC+TGG 0.244662 4.2:-88192787 MS.gene33360:CDS
TAGCTTCTTTATATTGGTTT+AGG 0.255101 4.2:+88189392 None:intergenic
TTCAATTGCATCATTGGTTA+TGG 0.258973 4.2:-88192872 MS.gene33360:CDS
TACTAACATAATCCAATAAT+TGG 0.264142 4.2:+88193054 None:intergenic
GCTTGTGTGTGCTCCTTCTT+TGG 0.296349 4.2:-88189740 MS.gene33360:CDS
TTCGTTCACAAAGTTTCTTC+TGG 0.300415 4.2:-88193691 MS.gene33360:CDS
TTCAAAAGGATCAACTCTAT+TGG 0.303368 4.2:+88193872 None:intergenic
TCTCATTGAAAAGACTAAAA+TGG 0.306767 4.2:+88190909 None:intergenic
TCCTGTTTCAATTGCATCAT+TGG 0.308299 4.2:-88192878 MS.gene33360:CDS
GAAACTTTGTGAACGAAGTT+TGG 0.318006 4.2:+88193697 None:intergenic
TGGTTTAGGTTATGGAATAT+TGG 0.321771 4.2:+88189406 None:intergenic
GAAACTGAATCCTAGTAAAA+TGG 0.323837 4.2:+88191167 None:intergenic
GATGCAAATAGTACCTGTTT+TGG 0.335400 4.2:-88192127 MS.gene33360:CDS
ATACTTCAGTGGTCCTCATT+TGG 0.346238 4.2:-88190578 MS.gene33360:CDS
TTGGCTCTTGCTATCAAAAC+TGG 0.349386 4.2:-88190559 MS.gene33360:CDS
GGCAACATTGGTAGGTTTCA+TGG 0.353389 4.2:-88192220 MS.gene33360:CDS
ACCAATATAAAGAAGCTATA+AGG 0.355595 4.2:-88189387 MS.gene33360:CDS
AGTTGCATTGGCAAAGTAGA+TGG 0.357725 4.2:+88189330 None:intergenic
CTCTTCATTTCAGTTCCATT+AGG 0.362515 4.2:-88189713 MS.gene33360:CDS
GGTTTATTCCAATCTTCTCT+TGG 0.372332 4.2:-88192766 MS.gene33360:CDS
CAACAACTCAAAGGGTTACT+AGG 0.374601 4.2:-88192171 MS.gene33360:CDS
GCCAATTTAAGATAGAGAAT+TGG 0.380536 4.2:+88192811 None:intergenic
ATTATCATCACTGCTGTTAT+CGG 0.382764 4.2:-88189821 MS.gene33360:CDS
TATTATCTAACCTTTCTTGC+AGG 0.383951 4.2:+88189305 None:intergenic
ATTTCAGTTCCATTAGGCCT+TGG 0.385772 4.2:-88189707 MS.gene33360:CDS
AACAAAGAAATGATGGCTAT+TGG 0.394027 4.2:-88190120 MS.gene33360:CDS
TTTCCCAAAACCGATGTGTT+TGG 0.399348 4.2:+88189442 None:intergenic
ACCAATGATGCAATTGAAAC+AGG 0.401865 4.2:+88192877 None:intergenic
TGCTCCAGCATTGTAGTTAA+CGG 0.409746 4.2:+88189946 None:intergenic
GATACATTGGTATCTCTGAT+TGG 0.409755 4.2:+88193838 None:intergenic
ATACATTATGCGAACTTAGA+AGG 0.411159 4.2:-88188936 MS.gene33360:CDS
TCAATTGCATCATTGGTTAT+GGG 0.411778 4.2:-88192871 MS.gene33360:CDS
TTCCGCTCTGATATTATATC+CGG 0.412635 4.2:-88193612 MS.gene33360:CDS
TGGTGGCAAGTTTGCAAGCT+TGG 0.413188 4.2:+88193074 None:intergenic
CTTTCTTTAGGATACTGAGA+TGG 0.423739 4.2:-88189155 MS.gene33360:intron
ACCGCAACTCCAAGGCCTAA+TGG 0.431452 4.2:+88189698 None:intergenic
AATCTTCTCTTGGTGTACTA+AGG 0.432718 4.2:-88192756 MS.gene33360:intron
TCCAATGGTGTTTGATACAT+TGG 0.436483 4.2:+88193825 None:intergenic
AATCCATGAAAAGGGTCATC+AGG 0.439230 4.2:+88193726 None:intergenic
GCTTTGATATATTCAGTACT+TGG 0.440775 4.2:-88192925 MS.gene33360:CDS
TCTTCATGTTATGTCACAAC+AGG 0.442713 4.2:-88190072 MS.gene33360:intron
TTTCTTTAGGATACTGAGAT+GGG 0.446275 4.2:-88189154 MS.gene33360:intron
TTCTTGCAGGTAAGTTGCAT+TGG 0.462099 4.2:+88189318 None:intergenic
TTGGATTCCTTTGGAATGAA+AGG 0.464886 4.2:-88188441 MS.gene33360:CDS
CTTGGAAGTTCTAGACATCT+TGG 0.471850 4.2:-88192907 MS.gene33360:CDS
TGCTAGCCTCGCCATTCCTC+AGG 0.473691 4.2:-88193580 MS.gene33360:intron
ATGCAACTTACCTGCAAGAA+AGG 0.475378 4.2:-88189315 MS.gene33360:intron
ATCAAAACTGGACTTGTCAC+TGG 0.484223 4.2:-88190547 MS.gene33360:CDS
TTGAATACAGAGACCAAAAC+AGG 0.486192 4.2:+88192114 None:intergenic
GATAACAGCAGTGATGATAA+TGG 0.492058 4.2:+88189823 None:intergenic
ATGGCTGCTAAGACAACGTT+CGG 0.494450 4.2:+88189842 None:intergenic
TCCATTAGGCCTTGGAGTTG+CGG 0.495832 4.2:-88189699 MS.gene33360:intron
TTATGGAATATTGGTGTCCC+TGG 0.500339 4.2:+88189415 None:intergenic
ACCGCGCCGCGTACAAATTG+TGG 0.502998 4.2:-88189787 MS.gene33360:CDS
TTAGTACACCAAGAGAAGAT+TGG 0.510702 4.2:+88192758 None:intergenic
CTATCAAAGGCAACATTGGT+AGG 0.514805 4.2:-88192228 MS.gene33360:CDS
GATGGTGGATTAAGTCCCTT+TGG 0.516719 4.2:+88190613 None:intergenic
TATAACATGTTTGATGATGG+TGG 0.517759 4.2:+88190598 None:intergenic
AGTTCTAGACATCTTGGTGT+TGG 0.520319 4.2:-88192901 MS.gene33360:CDS
AGCAGTATCAAATATAATCA+TGG 0.524523 4.2:-88189918 MS.gene33360:CDS
TTTCAGGAAGGAATTGCAGT+TGG 0.525631 4.2:-88190183 MS.gene33360:intron
GGATGGAAACAAAGAAATGA+TGG 0.525764 4.2:-88190127 MS.gene33360:CDS
AAATCCTGCTTCACGTCTCT+AGG 0.525812 4.2:-88189465 MS.gene33360:CDS
ACATTGGTAGGTTTCATGGC+TGG 0.529773 4.2:-88192216 MS.gene33360:CDS
TGTCACTACAACAACTCAAA+GGG 0.532681 4.2:-88192179 MS.gene33360:CDS
GAGGCTAGCAATGGTGAGAC+CGG 0.532977 4.2:+88193593 None:intergenic
TTTCTTTGTTTCCATCCACT+TGG 0.534917 4.2:+88190133 None:intergenic
TCAGCCGTTAACTACAATGC+TGG 0.538554 4.2:-88189950 MS.gene33360:CDS
ATGCGAACTTAGAAGGAGAC+TGG 0.538934 4.2:-88188929 MS.gene33360:CDS
TGAAGAGTGGTTCTTTGTGG+TGG 0.543877 4.2:+88193783 None:intergenic
ACCAATGTATCAAACACCAT+TGG 0.544380 4.2:-88193826 MS.gene33360:CDS
AGTACTGAATATATCAAAGC+AGG 0.552239 4.2:+88192928 None:intergenic
AATGAAGAGAACACCAAAGA+AGG 0.552828 4.2:+88189727 None:intergenic
ATTGGTCTTATGAACATAGC+TGG 0.553111 4.2:-88190102 MS.gene33360:CDS
TTGTTATCAACAAGAAGGCT+AGG 0.556830 4.2:+88191145 None:intergenic
ACAGCCAAAATGATAAATGC+AGG 0.557979 4.2:+88189361 None:intergenic
ATACAATCCTTTCATTCCAA+AGG 0.562151 4.2:+88188434 None:intergenic
TTGGCCTAGAGACGTGAAGC+AGG 0.562160 4.2:+88189461 None:intergenic
CTTCAGAACTACCAAGTGGA+TGG 0.562216 4.2:-88190144 MS.gene33360:CDS
TAACATAATCCAATAATTGG+TGG 0.562298 4.2:+88193057 None:intergenic
CTTGTGTTGGCAAATCCTGT+TGG 0.563326 4.2:-88188498 MS.gene33360:CDS
GTGTCACTACAACAACTCAA+AGG 0.565287 4.2:-88192180 MS.gene33360:CDS
GTTAACGGCTGATCGAGAAA+AGG 0.567574 4.2:+88189961 None:intergenic
GACAGAATAACTGAAGTCAA+TGG 0.571902 4.2:+88190934 None:intergenic
GTTGCATTGGCAAAGTAGAT+GGG 0.572656 4.2:+88189331 None:intergenic
GAAGATTGGTGAATTGCCAA+AGG 0.575624 4.2:-88190629 MS.gene33360:intron
ACTGAGATGGGTTCGAGAAG+AGG 0.576650 4.2:-88189142 MS.gene33360:CDS
GTGTCTTGTTATCAACAAGA+AGG 0.577748 4.2:+88191140 None:intergenic
AAGATTGGTGAATTGCCAAA+GGG 0.578839 4.2:-88190628 MS.gene33360:CDS
TTGATTGGTGCAGCTTGTGT+TGG 0.581372 4.2:-88188511 MS.gene33360:intron
TTGATAGCAAGAGCCAAATG+AGG 0.582240 4.2:+88190565 None:intergenic
AAAGGATTGTATCTGTCAGT+AGG 0.583509 4.2:-88188423 MS.gene33360:CDS
TGAAGCTTACCGCAACTCCA+AGG 0.591937 4.2:+88189690 None:intergenic
CGAACCTTGTGAATTTCCAA+TGG 0.598928 4.2:+88193810 None:intergenic
AATTGTGACAGAGCTTGAAG+AGG 0.600357 4.2:-88190987 MS.gene33360:intron
GAATAAACCAGCAAAGAAAG+TGG 0.605122 4.2:+88192780 None:intergenic
AAGTATAACATGTTTGATGA+TGG 0.614399 4.2:+88190595 None:intergenic
TCAAACATGTTATACTTCAG+TGG 0.614426 4.2:-88190589 MS.gene33360:CDS
AACACCATTGGAAATTCACA+AGG 0.624213 4.2:-88193814 MS.gene33360:CDS
AGGAATGGCGAGGCTAGCAA+TGG 0.626508 4.2:+88193584 None:intergenic
TCCACAATTTGTACGCGGCG+CGG 0.627795 4.2:+88189786 None:intergenic
CGTCTCTAGGCCAAACACAT+CGG 0.632092 4.2:-88189452 MS.gene33360:CDS
AAATCCTGTTGGAAATGTGA+TGG 0.641906 4.2:-88188487 MS.gene33360:CDS
CGCCGCGTACAAATTGTGGA+AGG 0.645147 4.2:-88189783 MS.gene33360:CDS
GACATACCTGAGGAATGGCG+AGG 0.651161 4.2:+88193574 None:intergenic
TGGCTGACATTTCATCATCG+TGG 0.662573 4.2:-88188392 MS.gene33360:CDS
TTCACTTCAGAACTACCAAG+TGG 0.666825 4.2:-88190148 MS.gene33360:CDS
GTGACAGGCATAGACACAAG+CGG 0.685657 4.2:-88188964 MS.gene33360:CDS
TCTGTCAGTAGGAGAAGCTG+TGG 0.687633 4.2:-88188412 MS.gene33360:CDS
AACCTTCCACAATTTGTACG+CGG 0.697031 4.2:+88189781 None:intergenic
GAACGCGTAGTAGCACTCAA+CGG 0.697606 4.2:-88189117 MS.gene33360:CDS
AAAAGATAAAGACTATACTG+AGG 0.705367 4.2:+88193633 None:intergenic
TTCGGTGTGTAATAGAACAG+CGG 0.721473 4.2:+88189860 None:intergenic
TGTATTCAAGGAAAGAGACG+AGG 0.732725 4.2:-88192100 MS.gene33360:intron
GACCGGATATAATATCAGAG+CGG 0.772362 4.2:+88193610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTGCATAATAAAATATA+TGG - chr4.2:88191167-88191186 MS.gene33360:CDS 10.0%
!! AGAAAATGTTAAAAAATTAA+TGG + chr4.2:88191054-88191073 None:intergenic 10.0%
!! ATAAAAAATTGATAAATAGT+TGG + chr4.2:88190902-88190921 None:intergenic 10.0%
!! ATATGAAAAATTCTTATATA+TGG - chr4.2:88191247-88191266 MS.gene33360:intron 10.0%
!! TAAAAATTAAAAATGAACTT+TGG - chr4.2:88189932-88189951 MS.gene33360:CDS 10.0%
!!! AAATCAAAAAAAAATTCTTT+TGG + chr4.2:88189127-88189146 None:intergenic 10.0%
!!! TATTTTTTGTTGATAATAAT+TGG + chr4.2:88190723-88190742 None:intergenic 10.0%
!! AAACATTAAATAAAGTCAAA+CGG + chr4.2:88191916-88191935 None:intergenic 15.0%
!! AAATAAAAAATAACCTTTGA+AGG - chr4.2:88189980-88189999 MS.gene33360:intron 15.0%
!! AATTATGTAAGAAAATATAG+TGG + chr4.2:88190273-88190292 None:intergenic 15.0%
!! TTGTCCATTAAAAAAAAATT+AGG - chr4.2:88190867-88190886 MS.gene33360:intron 15.0%
!!! AAATATTTTTAATCACCTTA+TGG + chr4.2:88192686-88192705 None:intergenic 15.0%
!!! ATTGTAATTTTTTTTTTGAG+AGG + chr4.2:88189803-88189822 None:intergenic 15.0%
!!! ATTTTTAAAATCAAACTTTC+AGG - chr4.2:88192276-88192295 MS.gene33360:intron 15.0%
!!! GATTCCTAATTTTTTTTTAA+TGG + chr4.2:88190874-88190893 None:intergenic 15.0%
!!! GTGGATTTTTATTTTTATAT+TGG - chr4.2:88189254-88189273 MS.gene33360:intron 15.0%
!!! TTTTTTTTTAATGGACAAAT+AGG + chr4.2:88190865-88190884 None:intergenic 15.0%
!! ATAAAAAAGTGAGAAATTTG+AGG + chr4.2:88190370-88190389 None:intergenic 20.0%
!! ATTGAATAGTTAGTCAATTA+AGG - chr4.2:88190943-88190962 MS.gene33360:CDS 20.0%
!! GTATTAATAGTAATACTAGT+TGG - chr4.2:88190496-88190515 MS.gene33360:intron 20.0%
!! TACTAACATAATCCAATAAT+TGG + chr4.2:88189211-88189230 None:intergenic 20.0%
!! TATTAGTGAAAAAAATTCCA+TGG + chr4.2:88191789-88191808 None:intergenic 20.0%
!! TGTTTACATTTATGATTGAT+TGG - chr4.2:88193736-88193755 MS.gene33360:CDS 20.0%
!! TTGAATAGTTAGTCAATTAA+GGG - chr4.2:88190944-88190963 MS.gene33360:CDS 20.0%
!!! AACAAAAAAGTATATGTATC+TGG - chr4.2:88193001-88193020 MS.gene33360:intron 20.0%
!!! AGAATATTTTTTAAAAGGGA+CGG - chr4.2:88190247-88190266 MS.gene33360:intron 20.0%
!!! AGCTGAGAATATTTTTTAAA+AGG - chr4.2:88190242-88190261 MS.gene33360:intron 20.0%
!!! ATAGTTTTCATTGACTATTT+TGG - chr4.2:88193552-88193571 MS.gene33360:intron 20.0%
!!! CAAAATCAAACTTTTAATTG+TGG - chr4.2:88188939-88188958 MS.gene33360:CDS 20.0%
!!! GCTGAGAATATTTTTTAAAA+GGG - chr4.2:88190243-88190262 MS.gene33360:intron 20.0%
!!! TGAATTTTCCAAATCTTTTT+AGG - chr4.2:88192756-88192775 MS.gene33360:intron 20.0%
!!! TTTTATGATTCTATCATGAA+TGG - chr4.2:88190916-88190935 MS.gene33360:CDS 20.0%
!!! TTTTTAAAAATAAACCCACT+TGG + chr4.2:88189918-88189937 None:intergenic 20.0%
! AAAAGATAAAGACTATACTG+AGG + chr4.2:88188632-88188651 None:intergenic 25.0%
! AAGTATAACATGTTTGATGA+TGG + chr4.2:88191670-88191689 None:intergenic 25.0%
! AATATATCTACAAAAGTAGC+TGG + chr4.2:88190662-88190681 None:intergenic 25.0%
! AATTAAAAGTGACCCTTAAT+TGG + chr4.2:88190794-88190813 None:intergenic 25.0%
! ACATACACTAAATGTAACAA+AGG + chr4.2:88191421-88191440 None:intergenic 25.0%
! ACATATTGCTCTATAAAATG+TGG + chr4.2:88193028-88193047 None:intergenic 25.0%
! ACCAATATAAAGAAGCTATA+AGG - chr4.2:88192875-88192894 MS.gene33360:CDS 25.0%
! AGCAGTATCAAATATAATCA+TGG - chr4.2:88192344-88192363 MS.gene33360:intron 25.0%
! ATATATCTACAAAAGTAGCT+GGG + chr4.2:88190661-88190680 None:intergenic 25.0%
! ATGACTAATAGTATTATGCA+AGG + chr4.2:88188984-88189003 None:intergenic 25.0%
! ATTTGGAAAATTCAGTTGAA+GGG + chr4.2:88192750-88192769 None:intergenic 25.0%
! TAACATAATCCAATAATTGG+TGG + chr4.2:88189208-88189227 None:intergenic 25.0%
! TATAACATCTCTTGTATGTT+TGG + chr4.2:88191566-88191585 None:intergenic 25.0%
! TCCAATTCTCTATCTTAAAT+TGG - chr4.2:88189450-88189469 MS.gene33360:CDS 25.0%
! TCCTTATAGCTTCTTTATAT+TGG + chr4.2:88192879-88192898 None:intergenic 25.0%
! TCTCATTGAAAAGACTAAAA+TGG + chr4.2:88191356-88191375 None:intergenic 25.0%
! TCTTCTAAATGTTCCAAAAA+GGG - chr4.2:88189852-88189871 MS.gene33360:CDS 25.0%
! TGTTACATTTAGTGTATGTT+TGG - chr4.2:88191422-88191441 MS.gene33360:intron 25.0%
! TTCTTCTAAATGTTCCAAAA+AGG - chr4.2:88189851-88189870 MS.gene33360:CDS 25.0%
!! ATAAACACTTGTTAACTGTT+TGG + chr4.2:88193643-88193662 None:intergenic 25.0%
!! CGTAGTTTTTGACAAAATAA+CGG - chr4.2:88191504-88191523 MS.gene33360:intron 25.0%
!! TATCTCTGATTGGATTTTAA+TGG + chr4.2:88188417-88188436 None:intergenic 25.0%
!! TTAACATTTTCTTTTTGCAG+TGG - chr4.2:88191062-88191081 MS.gene33360:intron 25.0%
!! TTTGACTTTCTATATCACAA+GGG - chr4.2:88190689-88190708 MS.gene33360:intron 25.0%
!!! ATTTTCCAAATCTTTTTAGG+TGG - chr4.2:88192759-88192778 MS.gene33360:CDS 25.0%
!!! ATTTTTTTCTCTTCCCTTTT+TGG + chr4.2:88189868-88189887 None:intergenic 25.0%
!!! CTTTATATTGGTTTAGGTTA+TGG + chr4.2:88192867-88192886 None:intergenic 25.0%
!!! CTTTTTTGCTTTGTTTTCTT+TGG - chr4.2:88191611-88191630 MS.gene33360:intron 25.0%
!!! TAGCTTCTTTATATTGGTTT+AGG + chr4.2:88192873-88192892 None:intergenic 25.0%
!!! TCAAATATTTTGGATTCCTT+TGG - chr4.2:88193812-88193831 MS.gene33360:CDS 25.0%
!!! TCTCTTTTTGTATTTTTGCA+GGG - chr4.2:88189154-88189173 MS.gene33360:intron 25.0%
!!! TGGATTTTAATGGTTTCAAA+AGG + chr4.2:88188407-88188426 None:intergenic 25.0%
!!! TGTCTTTTCTGTTTTTACAA+AGG - chr4.2:88192604-88192623 MS.gene33360:intron 25.0%
!!! TGTGATTGATTTTCTATCAA+AGG - chr4.2:88190021-88190040 MS.gene33360:intron 25.0%
!!! TTCTCTATTTTGTTTTGTTG+TGG - chr4.2:88189235-88189254 MS.gene33360:intron 25.0%
!!! TTCTCTTTTTGTATTTTTGC+AGG - chr4.2:88189153-88189172 MS.gene33360:intron 25.0%
!!! TTTTTTGTCTAGTAGTCTAA+CGG + chr4.2:88190414-88190433 None:intergenic 25.0%
AACAAAGAAATGATGGCTAT+TGG - chr4.2:88192142-88192161 MS.gene33360:CDS 30.0%
AACTTACTTATGTTTCAGGA+AGG - chr4.2:88192067-88192086 MS.gene33360:intron 30.0%
ACACTTACATTTGCATCAAT+GGG + chr4.2:88190833-88190852 None:intergenic 30.0%
ACGTATAAGAAGACACAATT+TGG - chr4.2:88193434-88193453 MS.gene33360:intron 30.0%
ATACAATCCTTTCATTCCAA+AGG + chr4.2:88193831-88193850 None:intergenic 30.0%
ATACATTATGCGAACTTAGA+AGG - chr4.2:88193326-88193345 MS.gene33360:intron 30.0%
ATGATAAGTCCTTTCAAACA+AGG - chr4.2:88191971-88191990 MS.gene33360:intron 30.0%
ATTATCATCACTGCTGTTAT+CGG - chr4.2:88192441-88192460 MS.gene33360:intron 30.0%
CAATGAAAACTATGTGACTT+TGG + chr4.2:88193545-88193564 None:intergenic 30.0%
CAGTTAACAAGTGTTTATGT+CGG - chr4.2:88193645-88193664 MS.gene33360:CDS 30.0%
CTTAGAAACATAATCAACCA+TGG - chr4.2:88191769-88191788 MS.gene33360:intron 30.0%
CTTCAACTTACTTATGTTTC+AGG - chr4.2:88192063-88192082 MS.gene33360:intron 30.0%
GAAACTGAATCCTAGTAAAA+TGG + chr4.2:88191098-88191117 None:intergenic 30.0%
GATTTGGAAAATTCAGTTGA+AGG + chr4.2:88192751-88192770 None:intergenic 30.0%
GCTTTGATATATTCAGTACT+TGG - chr4.2:88189337-88189356 MS.gene33360:CDS 30.0%
TAAAAATAAACCCACTTGGT+GGG + chr4.2:88189914-88189933 None:intergenic 30.0%
TAACTGTTTGGAAGAGTTTA+CGG + chr4.2:88193631-88193650 None:intergenic 30.0%
TACACTTACATTTGCATCAA+TGG + chr4.2:88190834-88190853 None:intergenic 30.0%
TATTATCTAACCTTTCTTGC+AGG + chr4.2:88192960-88192979 None:intergenic 30.0%
TATTGCCACCTAAAAAGATT+TGG + chr4.2:88192767-88192786 None:intergenic 30.0%
TCAAACATGTTATACTTCAG+TGG - chr4.2:88191673-88191692 MS.gene33360:intron 30.0%
TCAGCTTATTCCATAACTTA+GGG - chr4.2:88191833-88191852 MS.gene33360:intron 30.0%
TGTTTATACTTAAGTCGAGA+GGG + chr4.2:88192985-88193004 None:intergenic 30.0%
TTAAAAATAAACCCACTTGG+TGG + chr4.2:88189915-88189934 None:intergenic 30.0%
TTATGATTGAGATTGCTTAC+TGG - chr4.2:88190632-88190651 MS.gene33360:intron 30.0%
TTCAAAAGGATCAACTCTAT+TGG + chr4.2:88188393-88188412 None:intergenic 30.0%
TTCAGCTTATTCCATAACTT+AGG - chr4.2:88191832-88191851 MS.gene33360:intron 30.0%
TTGAGTGTTTCTCTTTCTTT+AGG - chr4.2:88193095-88193114 MS.gene33360:intron 30.0%
TTGTTTATACTTAAGTCGAG+AGG + chr4.2:88192986-88193005 None:intergenic 30.0%
! AGTACTGAATATATCAAAGC+AGG + chr4.2:88189337-88189356 None:intergenic 30.0%
! AGTTTTTGACAAAATAACGG+TGG - chr4.2:88191507-88191526 MS.gene33360:intron 30.0%
! CTTTGACTTTCTATATCACA+AGG - chr4.2:88190688-88190707 MS.gene33360:intron 30.0%
! GATTCCTGCATTTATCATTT+TGG - chr4.2:88192897-88192916 MS.gene33360:CDS 30.0%
! GCCAATTTAAGATAGAGAAT+TGG + chr4.2:88189454-88189473 None:intergenic 30.0%
! GCTGAAATCCAGAATAATTT+TGG + chr4.2:88191301-88191320 None:intergenic 30.0%
! GGTTTTTGAATCCATGAAAA+GGG + chr4.2:88188547-88188566 None:intergenic 30.0%
! GTTGCATGAGTCAAATATTT+TGG - chr4.2:88193802-88193821 MS.gene33360:CDS 30.0%
! TCAATTGCATCATTGGTTAT+GGG - chr4.2:88189391-88189410 MS.gene33360:CDS 30.0%
! TGCATAATTTTAGACATGAC+AGG - chr4.2:88193181-88193200 MS.gene33360:intron 30.0%
! TGGTTTAGGTTATGGAATAT+TGG + chr4.2:88192859-88192878 None:intergenic 30.0%
! TGGTTTTTGAATCCATGAAA+AGG + chr4.2:88188548-88188567 None:intergenic 30.0%
! TTCAATTGCATCATTGGTTA+TGG - chr4.2:88189390-88189409 MS.gene33360:CDS 30.0%
! TTTTCTATCAAAGGCAACAT+TGG - chr4.2:88190030-88190049 MS.gene33360:intron 30.0%
!! ACATGTTCCCTATTTTTCAA+TGG - chr4.2:88188603-88188622 MS.gene33360:intron 30.0%
!! ATGTCTAAGTTTTTGAAGAG+TGG + chr4.2:88188495-88188514 None:intergenic 30.0%
!! ATGTTCCCTATTTTTCAATG+GGG - chr4.2:88188605-88188624 MS.gene33360:intron 30.0%
!! CATGTTCCCTATTTTTCAAT+GGG - chr4.2:88188604-88188623 MS.gene33360:intron 30.0%
!! TATAACATGTTTGATGATGG+TGG + chr4.2:88191667-88191686 None:intergenic 30.0%
!! TTTCTTTAGGATACTGAGAT+GGG - chr4.2:88193108-88193127 MS.gene33360:intron 30.0%
!!! CTTTGTTTTCTTTGGAAGAT+TGG - chr4.2:88191619-88191638 MS.gene33360:intron 30.0%
!!! GAATGTTTTGAAGAGTTTTG+TGG + chr4.2:88190573-88190592 None:intergenic 30.0%
AAAGGATTGTATCTGTCAGT+AGG - chr4.2:88193839-88193858 MS.gene33360:CDS 35.0%
AAATCCTGTTGGAAATGTGA+TGG - chr4.2:88193775-88193794 MS.gene33360:CDS 35.0%
AACACCATTGGAAATTCACA+AGG - chr4.2:88188448-88188467 MS.gene33360:CDS 35.0%
AAGATTGGTGAATTGCCAAA+GGG - chr4.2:88191634-88191653 MS.gene33360:intron 35.0%
AATGAAGAGAACACCAAAGA+AGG + chr4.2:88192538-88192557 None:intergenic 35.0%
ACAGCCAAAATGATAAATGC+AGG + chr4.2:88192904-88192923 None:intergenic 35.0%
ACAGCTGCAAAAAAAAAGCA+AGG + chr4.2:88193280-88193299 None:intergenic 35.0%
ACCAATGATGCAATTGAAAC+AGG + chr4.2:88189388-88189407 None:intergenic 35.0%
ACCAATGTATCAAACACCAT+TGG - chr4.2:88188436-88188455 MS.gene33360:CDS 35.0%
ACTGGAACAAAAATCACTTC+AGG - chr4.2:88193351-88193370 MS.gene33360:intron 35.0%
AGCTACTCAATATGTCCATT+CGG + chr4.2:88190769-88190788 None:intergenic 35.0%
ATGCATGCAAGATGAAACTA+TGG + chr4.2:88189009-88189028 None:intergenic 35.0%
ATGTTTCTCACCCTAAGTTA+TGG + chr4.2:88191846-88191865 None:intergenic 35.0%
ATTGAGTAGCTAGCCAATTA+AGG - chr4.2:88190778-88190797 MS.gene33360:intron 35.0%
CTCTTCATTTCAGTTCCATT+AGG - chr4.2:88192549-88192568 MS.gene33360:intron 35.0%
GAAACACTCAAAAAATGCCT+CGG + chr4.2:88193086-88193105 None:intergenic 35.0%
GAAACTTTGTGAACGAAGTT+TGG + chr4.2:88188568-88188587 None:intergenic 35.0%
GAATAAACCAGCAAAGAAAG+TGG + chr4.2:88189485-88189504 None:intergenic 35.0%
GACAGAATAACTGAAGTCAA+TGG + chr4.2:88191331-88191350 None:intergenic 35.0%
GATAACAGCAGTGATGATAA+TGG + chr4.2:88192442-88192461 None:intergenic 35.0%
GATACATTGGTATCTCTGAT+TGG + chr4.2:88188427-88188446 None:intergenic 35.0%
GGATGGAAACAAAGAAATGA+TGG - chr4.2:88192135-88192154 MS.gene33360:CDS 35.0%
GGTTTATTCCAATCTTCTCT+TGG - chr4.2:88189496-88189515 MS.gene33360:intron 35.0%
GTTGTATGCAACTACAATTG+TGG + chr4.2:88188787-88188806 None:intergenic 35.0%
TATAAGCCTTAGAGCATGTT+TGG + chr4.2:88192001-88192020 None:intergenic 35.0%
TCAGGTATGTCAAAATATCG+AGG - chr4.2:88188700-88188719 MS.gene33360:intron 35.0%
TCCAATGGTGTTTGATACAT+TGG + chr4.2:88188440-88188459 None:intergenic 35.0%
TCCTGTTTCAATTGCATCAT+TGG - chr4.2:88189384-88189403 MS.gene33360:CDS 35.0%
TCTCGTAAGTATAGTTCAGT+TGG - chr4.2:88190305-88190324 MS.gene33360:intron 35.0%
TCTTCATGTTATGTCACAAC+AGG - chr4.2:88192190-88192209 MS.gene33360:CDS 35.0%
TGAAGAGGCCAAAATTATTC+TGG - chr4.2:88191290-88191309 MS.gene33360:intron 35.0%
TGTCACTACAACAACTCAAA+GGG - chr4.2:88190083-88190102 MS.gene33360:CDS 35.0%
TTAGTACACCAAGAGAAGAT+TGG + chr4.2:88189507-88189526 None:intergenic 35.0%
TTCCGCTCTGATATTATATC+CGG - chr4.2:88188650-88188669 MS.gene33360:intron 35.0%
TTCGTTCACAAAGTTTCTTC+TGG - chr4.2:88188571-88188590 MS.gene33360:intron 35.0%
TTGAATACAGAGACCAAAAC+AGG + chr4.2:88190151-88190170 None:intergenic 35.0%
TTGAGTAGCTAGCCAATTAA+GGG - chr4.2:88190779-88190798 MS.gene33360:intron 35.0%
TTGTTATCAACAAGAAGGCT+AGG + chr4.2:88191120-88191139 None:intergenic 35.0%
TTTGGAAGAGTTTACGGAAA+CGG + chr4.2:88193625-88193644 None:intergenic 35.0%
! AAAAATAAACCCACTTGGTG+GGG + chr4.2:88189913-88189932 None:intergenic 35.0%
! AAGTTTTTGCAAGCATGATG+TGG - chr4.2:88188829-88188848 MS.gene33360:intron 35.0%
! AATCTTCTCTTGGTGTACTA+AGG - chr4.2:88189506-88189525 MS.gene33360:intron 35.0%
! ACATTTCAAAGATTAGTCCG+AGG - chr4.2:88193066-88193085 MS.gene33360:CDS 35.0%
! ACTGTGATTTTGCCAAACTT+AGG - chr4.2:88191534-88191553 MS.gene33360:intron 35.0%
! CTGTGATTTTGCCAAACTTA+GGG - chr4.2:88191535-88191554 MS.gene33360:intron 35.0%
! GATGCAAATAGTACCTGTTT+TGG - chr4.2:88190135-88190154 MS.gene33360:CDS 35.0%
! GTGTCTTGTTATCAACAAGA+AGG + chr4.2:88191125-88191144 None:intergenic 35.0%
! TCATGGCAAACCATTTTACT+AGG - chr4.2:88191085-88191104 MS.gene33360:intron 35.0%
! TTTCTTTGTTTCCATCCACT+TGG + chr4.2:88192132-88192151 None:intergenic 35.0%
! TTTTCCATCACATTTCCAAC+AGG + chr4.2:88193782-88193801 None:intergenic 35.0%
! TTTTCTTTTTGCAGTGGTCA+TGG - chr4.2:88191068-88191087 MS.gene33360:intron 35.0%
!! ATTGGTCTTATGAACATAGC+TGG - chr4.2:88192160-88192179 MS.gene33360:CDS 35.0%
!! ATTTTGACATACCTGAGGAA+TGG + chr4.2:88188696-88188715 None:intergenic 35.0%
!! CTTTCTTTAGGATACTGAGA+TGG - chr4.2:88193107-88193126 MS.gene33360:intron 35.0%
!! TTGGATTCCTTTGGAATGAA+AGG - chr4.2:88193821-88193840 MS.gene33360:CDS 35.0%
!! TTTGGATTGCCTTGTTTGAA+AGG + chr4.2:88191983-88192002 None:intergenic 35.0%
!! TTTTGAAGAGTGGTTCTTTG+TGG + chr4.2:88188485-88188504 None:intergenic 35.0%
!!! AATATTTTTTCCCCACCAAG+TGG - chr4.2:88189900-88189919 MS.gene33360:CDS 35.0%
!!! ATATTTTTTCCCCACCAAGT+GGG - chr4.2:88189901-88189920 MS.gene33360:CDS 35.0%
!!! TCGATATTTTGACATACCTG+AGG + chr4.2:88188701-88188720 None:intergenic 35.0%
!!! TGTTTTGGTCTCTGTATTCA+AGG - chr4.2:88190150-88190169 MS.gene33360:CDS 35.0%
!!! TTTTTTTTTGCAGCTGTGAC+AGG - chr4.2:88193283-88193302 MS.gene33360:intron 35.0%
AACCTTCCACAATTTGTACG+CGG + chr4.2:88192484-88192503 None:intergenic 40.0%
AACTACAATTGTGGTCGCAT+CGG + chr4.2:88188778-88188797 None:intergenic 40.0%
AATCCATGAAAAGGGTCATC+AGG + chr4.2:88188539-88188558 None:intergenic 40.0%
AATTGTGACAGAGCTTGAAG+AGG - chr4.2:88191275-88191294 MS.gene33360:intron 40.0%
ATACTTCAGTGGTCCTCATT+TGG - chr4.2:88191684-88191703 MS.gene33360:intron 40.0%
ATCAAAACTGGACTTGTCAC+TGG - chr4.2:88191715-88191734 MS.gene33360:intron 40.0%
ATCTTGTGCGATGCAAAATG+AGG + chr4.2:88193387-88193406 None:intergenic 40.0%
ATGCAACTTACCTGCAAGAA+AGG - chr4.2:88192947-88192966 MS.gene33360:intron 40.0%
ATTTCAGTTCCATTAGGCCT+TGG - chr4.2:88192555-88192574 MS.gene33360:intron 40.0%
CAACAACTCAAAGGGTTACT+AGG - chr4.2:88190091-88190110 MS.gene33360:CDS 40.0%
CGAACCTTGTGAATTTCCAA+TGG + chr4.2:88188455-88188474 None:intergenic 40.0%
CTACTCAATATGTCCATTCG+GGG + chr4.2:88190767-88190786 None:intergenic 40.0%
CTATCAAAGGCAACATTGGT+AGG - chr4.2:88190034-88190053 MS.gene33360:intron 40.0%
GAAGATTGGTGAATTGCCAA+AGG - chr4.2:88191633-88191652 MS.gene33360:intron 40.0%
GACCGGATATAATATCAGAG+CGG + chr4.2:88188655-88188674 None:intergenic 40.0%
GAGGACCCCATTGAAAAATA+GGG + chr4.2:88188613-88188632 None:intergenic 40.0%
GCAAACTTGCCACCAATTAT+TGG - chr4.2:88189196-88189215 MS.gene33360:intron 40.0%
GCTACTCAATATGTCCATTC+GGG + chr4.2:88190768-88190787 None:intergenic 40.0%
TAACCTGTGTACACCTTCAA+AGG + chr4.2:88189996-88190015 None:intergenic 40.0%
TCATCTTGCATGCATGAGTT+TGG - chr4.2:88189014-88189033 MS.gene33360:intron 40.0%
TCGGGGTAGAATCAGAAAAA+AGG + chr4.2:88190750-88190769 None:intergenic 40.0%
TGAGGACCCCATTGAAAAAT+AGG + chr4.2:88188614-88188633 None:intergenic 40.0%
TGCTCCAGCATTGTAGTTAA+CGG + chr4.2:88192319-88192338 None:intergenic 40.0%
TGTATTCAAGGAAAGAGACG+AGG - chr4.2:88190162-88190181 MS.gene33360:CDS 40.0%
TTAGGGTGAGAAACATGTCT+AGG - chr4.2:88191850-88191869 MS.gene33360:intron 40.0%
TTCACTTCAGAACTACCAAG+TGG - chr4.2:88192114-88192133 MS.gene33360:CDS 40.0%
TTCTTGCAGGTAAGTTGCAT+TGG + chr4.2:88192947-88192966 None:intergenic 40.0%
TTTCAGGAAGGAATTGCAGT+TGG - chr4.2:88192079-88192098 MS.gene33360:intron 40.0%
TTTCCCAAAACCGATGTGTT+TGG + chr4.2:88192823-88192842 None:intergenic 40.0%
! AGTTGCATTGGCAAAGTAGA+TGG + chr4.2:88192935-88192954 None:intergenic 40.0%
! GTGTCACTACAACAACTCAA+AGG - chr4.2:88190082-88190101 MS.gene33360:CDS 40.0%
! GTTGCATTGGCAAAGTAGAT+GGG + chr4.2:88192934-88192953 None:intergenic 40.0%
! GTTTGACTTTGACGAGATCA+CGG - chr4.2:88191451-88191470 MS.gene33360:intron 40.0%
! TAACCTTTGAAGGTGTACAC+AGG - chr4.2:88189990-88190009 MS.gene33360:intron 40.0%
! TTATGGAATATTGGTGTCCC+TGG + chr4.2:88192850-88192869 None:intergenic 40.0%
! TTCGGTGTGTAATAGAACAG+CGG + chr4.2:88192405-88192424 None:intergenic 40.0%
! TTGATAGCAAGAGCCAAATG+AGG + chr4.2:88191700-88191719 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+TGG - chr4.2:88191703-88191722 MS.gene33360:intron 40.0%
! TTTCCTGATGACCCTTTTCA+TGG - chr4.2:88188533-88188552 MS.gene33360:intron 40.0%
! TTTGAAGGTGTACACAGGTT+AGG - chr4.2:88189995-88190014 MS.gene33360:intron 40.0%
! TTTTCTGATTCTACCCCGAA+TGG - chr4.2:88190751-88190770 MS.gene33360:intron 40.0%
!! AGTTCTAGACATCTTGGTGT+TGG - chr4.2:88189361-88189380 MS.gene33360:CDS 40.0%
!! CTTGGAAGTTCTAGACATCT+TGG - chr4.2:88189355-88189374 MS.gene33360:CDS 40.0%
!! GTTTGGATTAGCCCTAAGTT+TGG + chr4.2:88191549-88191568 None:intergenic 40.0%
!! TAGTTCAGTTGGTAGCTACT+AGG - chr4.2:88190316-88190335 MS.gene33360:intron 40.0%
AAATCCTGCTTCACGTCTCT+AGG - chr4.2:88192797-88192816 MS.gene33360:CDS 45.0%
ACATTGGTAGGTTTCATGGC+TGG - chr4.2:88190046-88190065 MS.gene33360:intron 45.0%
ATGCGAACTTAGAAGGAGAC+TGG - chr4.2:88193333-88193352 MS.gene33360:intron 45.0%
ATGGCTGCTAAGACAACGTT+CGG + chr4.2:88192423-88192442 None:intergenic 45.0%
CTTCAGAACTACCAAGTGGA+TGG - chr4.2:88192118-88192137 MS.gene33360:CDS 45.0%
GGCAACATTGGTAGGTTTCA+TGG - chr4.2:88190042-88190061 MS.gene33360:intron 45.0%
GGCAATCCAAACATGCTCTA+AGG - chr4.2:88191992-88192011 MS.gene33360:intron 45.0%
GTTAACGGCTGATCGAGAAA+AGG + chr4.2:88192304-88192323 None:intergenic 45.0%
TCAGCCGTTAACTACAATGC+TGG - chr4.2:88192312-88192331 MS.gene33360:intron 45.0%
TGAAGAGTGGTTCTTTGTGG+TGG + chr4.2:88188482-88188501 None:intergenic 45.0%
TGGCTGACATTTCATCATCG+TGG - chr4.2:88193870-88193889 MS.gene33360:CDS 45.0%
TTGATTGGTGCAGCTTGTGT+TGG - chr4.2:88193751-88193770 MS.gene33360:CDS 45.0%
! CTTGTGTTGGCAAATCCTGT+TGG - chr4.2:88193764-88193783 MS.gene33360:CDS 45.0%
!! GATGGTGGATTAAGTCCCTT+TGG + chr4.2:88191652-88191671 None:intergenic 45.0%
!! TTCACTGCCACTTTCTTTGC+TGG - chr4.2:88189475-88189494 MS.gene33360:CDS 45.0%
!!! AGGCCAAACACATCGGTTTT+GGG - chr4.2:88192817-88192836 MS.gene33360:CDS 45.0%
!!! CGGTTTTGGGAAACATTCCA+GGG - chr4.2:88192830-88192849 MS.gene33360:CDS 45.0%
!!! TAGGCCAAACACATCGGTTT+TGG - chr4.2:88192816-88192835 MS.gene33360:CDS 45.0%
!!! TCGGTTTTGGGAAACATTCC+AGG - chr4.2:88192829-88192848 MS.gene33360:CDS 45.0%
!! AAAAAAAAAAAAAACTATAA+TGG + chr4.2:88189058-88189077 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr4.2:88189069-88189088 MS.gene33360:intron 5.0%
CGTCTCTAGGCCAAACACAT+CGG - chr4.2:88192810-88192829 MS.gene33360:CDS 50.0%
GAACGCGTAGTAGCACTCAA+CGG - chr4.2:88193145-88193164 MS.gene33360:intron 50.0%
GCTTGTGTGTGCTCCTTCTT+TGG - chr4.2:88192522-88192541 MS.gene33360:intron 50.0%
GTGACAGGCATAGACACAAG+CGG - chr4.2:88193298-88193317 MS.gene33360:intron 50.0%
TCCATTAGGCCTTGGAGTTG+CGG - chr4.2:88192563-88192582 MS.gene33360:intron 50.0%
TCTGTCAGTAGGAGAAGCTG+TGG - chr4.2:88193850-88193869 MS.gene33360:CDS 50.0%
TGAAGCTTACCGCAACTCCA+AGG + chr4.2:88192575-88192594 None:intergenic 50.0%
TGGTGGCAAGTTTGCAAGCT+TGG + chr4.2:88189191-88189210 None:intergenic 50.0%
! ACTGAGATGGGTTCGAGAAG+AGG - chr4.2:88193120-88193139 MS.gene33360:intron 50.0%
ACCGCAACTCCAAGGCCTAA+TGG + chr4.2:88192567-88192586 None:intergenic 55.0%
AGGAATGGCGAGGCTAGCAA+TGG + chr4.2:88188681-88188700 None:intergenic 55.0%
CGCCGCGTACAAATTGTGGA+AGG - chr4.2:88192479-88192498 MS.gene33360:intron 55.0%
GACATACCTGAGGAATGGCG+AGG + chr4.2:88188691-88188710 None:intergenic 55.0%
GAGGCTAGCAATGGTGAGAC+CGG + chr4.2:88188672-88188691 None:intergenic 55.0%
TCCACAATTTGTACGCGGCG+CGG + chr4.2:88192479-88192498 None:intergenic 55.0%
TTGGCCTAGAGACGTGAAGC+AGG + chr4.2:88192804-88192823 None:intergenic 55.0%
ACCGCGCCGCGTACAAATTG+TGG - chr4.2:88192475-88192494 MS.gene33360:intron 60.0%
! TGCTAGCCTCGCCATTCCTC+AGG - chr4.2:88188682-88188701 MS.gene33360:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 88188377 88193907 88188377 ID=MS.gene33360
chr4.2 mRNA 88188377 88193907 88188377 ID=MS.gene33360.t1;Parent=MS.gene33360
chr4.2 exon 88193581 88193907 88193581 ID=MS.gene33360.t1.exon1;Parent=MS.gene33360.t1
chr4.2 CDS 88193581 88193907 88193581 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88193061 88193109 88193061 ID=MS.gene33360.t1.exon2;Parent=MS.gene33360.t1
chr4.2 CDS 88193061 88193109 88193061 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88192757 88192964 88192757 ID=MS.gene33360.t1.exon3;Parent=MS.gene33360.t1
chr4.2 CDS 88192757 88192964 88192757 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88192101 88192272 88192101 ID=MS.gene33360.t1.exon4;Parent=MS.gene33360.t1
chr4.2 CDS 88192101 88192272 88192101 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88191137 88191202 88191137 ID=MS.gene33360.t1.exon5;Parent=MS.gene33360.t1
chr4.2 CDS 88191137 88191202 88191137 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88190885 88190998 88190885 ID=MS.gene33360.t1.exon6;Parent=MS.gene33360.t1
chr4.2 CDS 88190885 88190998 88190885 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88190531 88190647 88190531 ID=MS.gene33360.t1.exon7;Parent=MS.gene33360.t1
chr4.2 CDS 88190531 88190647 88190531 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88190073 88190199 88190073 ID=MS.gene33360.t1.exon8;Parent=MS.gene33360.t1
chr4.2 CDS 88190073 88190199 88190073 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88189700 88189986 88189700 ID=MS.gene33360.t1.exon9;Parent=MS.gene33360.t1
chr4.2 CDS 88189700 88189986 88189700 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88189316 88189506 88189316 ID=MS.gene33360.t1.exon10;Parent=MS.gene33360.t1
chr4.2 CDS 88189316 88189506 88189316 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88189082 88189167 88189082 ID=MS.gene33360.t1.exon11;Parent=MS.gene33360.t1
chr4.2 CDS 88189082 88189167 88189082 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88188912 88188988 88188912 ID=MS.gene33360.t1.exon12;Parent=MS.gene33360.t1
chr4.2 CDS 88188912 88188988 88188912 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
chr4.2 exon 88188377 88188520 88188377 ID=MS.gene33360.t1.exon13;Parent=MS.gene33360.t1
chr4.2 CDS 88188377 88188520 88188377 ID=cds.MS.gene33360.t1;Parent=MS.gene33360.t1
Gene Sequence

>MS.gene33360

ATGGGTGTGAATTCCAATAGAGTTGATCCTTTTGAAACCATTAAAATCCAATCAGAGATACCAATGTATCAAACACCATTGGAAATTCACAAGGTTCGTTTGCCACCACAAAGAACCACTCTTCAAAAACTTAGACATAGACTCTCTGAAATCTTTTTTCCTGATGACCCTTTTCATGGATTCAAAAACCAAACTTCGTTCACAAAGTTTCTTCTGGCTCTTCAATACATGTTCCCTATTTTTCAATGGGGTCCTCAGTATAGTCTTTATCTTTTCCGCTCTGATATTATATCCGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGTATGTCAAAATATCGAGGTTTTAAATTGAAGTCGCAATAACATTTGTTAAAAGAGTATATATAGATGTTACCGATGCGACCACAATTGTAGTTGCATACAACGATTTTTTAAACGTCGCATAATAAGTTTTTGCAAGCATGATGTGGTTTGTTTAATTCAAAATTCGTAAAATGAAAAAGTTTTATCAAATAAAATGTTACTAACGACTATTTTACAAACTTTTGTTGAAGTTACAAAATCAAACTTTTAATTGTGGTTGATCACAATATTTGAGACCTTGCATAATACTATTAGTCATAGCCATAGTTTCATCTTGCATGCATGAGTTTGGTTTTGTTAATGTATACTACCATTATAGTTTTTTTTTTTTTTTTTTTTTTTTGAGGATATAAGTTAATATTTAATTTAATGAAACTTGCCAAAAGAATTTTTTTTTGATTTTTTTCTTTCTCTTTTTGTATTTTTGCAGGGAATCAGTTATGCCAAGCTTGCAAACTTGCCACCAATTATTGGATTATGTTAGTATTCATTCTCTATTTTGTTTTGTTGTGGATTTTTATTTTTATATTGGTTGATATTTAATTAAATTTATATATCATCATTACTACATGCAGATTCAAGTTTTGTACCTGCTTTGATATATTCAGTACTTGGAAGTTCTAGACATCTTGGTGTTGGTCCTGTTTCAATTGCATCATTGGTTATGGGATCAATGTTAAGTGAAAGTGTTTCTTATAGTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGTTTATTCCAATCTTCTCTTGGTGTACTAAGGTACTAATAATCAATCATGCACAAATTAAAATGTTTTCAAAAAAAGAAAAAGAGAAATTAGCATAATATCATCACTTAACGTAGAACATAAATTATATTAGAAGTTTATTTTTACAAAAAAAAAAACAATTATAGAAAATTAAATAATTTAGTTGAGTATTTGTTCAATAAAGTGCTATAGAAAAATAATTAAGTTCTTATTAAAAAGTTACTCTGAAAATGAAATAAACTAAAAATCATTTCATAATATTTTAATATAATTTTTATGAGAGCCTCTCAAAAAAAAAATTACAATGAGATAAACTCAAATGAGTTTTGATAAATTCTTCTAAATGTTCCAAAAAGGGAAGAGAAAAAAATGAAGAAAATTACAATATTTTTTCCCCACCAAGTGGGTTTATTTTTAAAAATTAAAAATGAACTTTGGAAAATTATATTTTATGATTAAAAATAAATAAAAAATAACCTTTGAAGGTGTACACAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCAACATTGGTAGGTTTCATGGCTGGTGCAGCAATCATTGTGTCACTACAACAACTCAAAGGGTTACTAGGAATAGTTCATTTCACAAGCAAGATGCAAATAGTACCTGTTTTGGTCTCTGTATTCAAGGAAAGAGACGAGGTATATTTTGATTTTGATGTTTTTTTTAATGTTAAAAAATTATACATTAAAGAATCTAAGCTGAGAATATTTTTTAAAAGGGACGGCCACTATATTTTCTTACATAATTTATAATTTAACGTCTCGTAAGTATAGTTCAGTTGGTAGCTACTAGGAGCATTATTACAAGAATCAGAGTTTGAACCTCAAATTTCTCACTTTTTTATACATAATGTGTGTGAATGTAGCCGTTAGACTACTAGACAAAAAAAAATCTAAATAATTATGTTTTGCAAGTTTTTAAAATATTAATTTTTTGAAAGCGTTTTTAAAGTATTAATAGTAATACTAGTTGGTAGAGTAAAGCTACAATTGAAAAAATAAAATAAAAAATAAATTAATCACAACCACAAAACTCTTCAAAACATTCTTATAGCACTGATTCTGTTTTAAGAAATAAGAATTAACATTATGATTGAGATTGCTTACTGGAATCCCAGCTACTTTTGTAGATATATTTTTTTACTTTGACTTTCTATATCACAAGGGATCATATTCCAATTATTATCAACAAAAAATATATTCCTTTTTTCTGATTCTACCCCGAATGGACATATTGAGTAGCTAGCCAATTAAGGGTCACTTTTAATTGAAAATACATAGTTGTCCCATTGATGCAAATGTAAGTGTAATGTAATACCTATTTGTCCATTAAAAAAAAATTAGGAATCATATTCCAACTATTTATCAATTTTTTATGATTCTATCATGAATGGACATATTGAATAGTTAGTCAATTAAGGGTCACTTTTAAATGAAAATACATATTTGTCCCATTGATGCAAATGTAAGTGTAATTTAATTAATTATAATTACATACATATATGTCCATTAATTTTTTAACATTTTCTTTTTGCAGTGGTCATGGCAAACCATTTTACTAGGATTCAGTTTCCTAGCCTTCTTGTTGATAACAAGACACATTGTAAGATTCTTCATCTTGCAATTTGCATAATAAAATATATGGACTATTGTTTTTTGCTTTGATAAGTGATAATTATTTTAATTTCATTTGCTTCTTAATATATGAAAAATTCTTATATATGGTTTTAAATTGTGACAGAGCTTGAAGAGGCCAAAATTATTCTGGATTTCAGCAGCTGCACCATTGACTTCAGTTATTCTGTCAACCATTTTAGTCTTTTCAATGAGACATAAGATCAATAAAATAGCTATTGTAAGAAAAGACACTTTACCTTTGTTACATTTAGTGTATGTTTGGAATAATGTTTGACTTTGACGAGATCACGGTCACATTGTGATTCTGTTGAAGCTTCAAAGCGTAGTTTTTGACAAAATAACGGTGGCAACACTGTGATTTTGCCAAACTTAGGGCTAATCCAAACATACAAGAGATGTTATATAGAAATGATCTTATTAATAACTCTCTTTTTTGCTTTGTTTTCTTTGGAAGATTGGTGAATTGCCAAAGGGACTTAATCCACCATCATCAAACATGTTATACTTCAGTGGTCCTCATTTGGCTCTTGCTATCAAAACTGGACTTGTCACTGGAATCTTGTCTCTCACTGTAAGCTTTCTCAAACTTAGAAACATAATCAACCATGGAATTTTTTTCACTAATACTACTACATGTCTATAAGTTGTTTTCAGCTTATTCCATAACTTAGGGTGAGAAACATGTCTAGGATAACTTATGAAAAAAAAAAACTTATAGTTTATATGAAAACCGTTTGACTTTATTTAATGTTTTGTTATAGAAATAGCTTGTACATATAAGCACTTAAATGATAAGTCCTTTCAAACAAGGCAATCCAAACATGCTCTAAGGCTTATAGCTTCAACAAACAAACAAAATGAAATACATCAAATAACTCAACTTCAACTTACTTATGTTTCAGGAAGGAATTGCAGTTGGAAGAACATTTGCTTCACTTCAGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGTTATGTCACAACAGGCAATGATTCATCACAAGTAGTTGTTAAAGAAATCAAAGTTTTTCAAGAAAAATATCAATTCTAATTTTTAAAATCAAACTTTCAGGATCCTTTTCTCGATCAGCCGTTAACTACAATGCTGGAGCACAGACAGCAGTATCAAATATAATCATGGCATCAGCAGTTCTTGTGACACTTCTGTTTCTCATGCCGCTGTTCTATTACACACCGAACGTTGTCTTAGCAGCCATTATCATCACTGCTGTTATCGGTCTAATTGATTACCGCGCCGCGTACAAATTGTGGAAGGTTGACAAGCTTGATTTCTTAGCTTGTGTGTGCTCCTTCTTTGGTGTTCTCTTCATTTCAGTTCCATTAGGCCTTGGAGTTGCGGTAAGCTTCAAAATTCACATGTCTTTTCTGTTTTTACAAAGGATATAACTCATATACACTGACAATGTAAAAATCATTTCACTGTCGATCATTCGTAACCATAAGGTGATTAAAAATATTTGACTTCAATCATAACTATTTCTGTTAAAAGCATGTTCATTACCCTTCAACTGAATTTTCCAAATCTTTTTAGGTGGCAATATCAGTCTTCAAAATCCTGCTTCACGTCTCTAGGCCAAACACATCGGTTTTGGGAAACATTCCAGGGACACCAATATTCCATAACCTAAACCAATATAAAGAAGCTATAAGGATTCCTGCATTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCCAATGCAACTTACCTGCAAGAAAGGTTAGATAATACTCCCTCTCGACTTAAGTATAAACAAAAAAGTATATGTATCTGGTCCACATTTTATAGAGCAATATGTATGCTTGTCAAGTTTTGTACATTTCAAAGATTAGTCCGAGGCATTTTTTGAGTGTTTCTCTTTCTTTAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACGCGTAGTAGCACTCAACGGAAGTGCATTGAAATGCATAATTTTAGACATGACAGGCAAGTATTTCGTTTCGCTTGTGAAGTTTGTTATCAAAGTTTTGAGATCATTTTGATTTAAAAGTTGTATTTTTCCTTGCTTTTTTTTTGCAGCTGTGACAGGCATAGACACAAGCGGAATCGATACATTATGCGAACTTAGAAGGAGACTGGAACAAAAATCACTTCAGGTAAATATATACCTCATTTTGCATCGCACAAGATGCAACACTAGTATATACTAATTGTAACACGTATAAGAAGACACAATTTGGATAAATAGCTTAATTAAACACTTATAACATAAGTGTTTATCATATAAATGCTTATGTATAAGCTATTTCTATAACATAAGATAAACCAAAGTCACATAGTTTTCATTGACTATTTTGGAGAACTTATGAAAATAAGCTAAAAACAACTAATAGACAAGCTATAAACCGTTTCCGTAAACTCTTCCAAACAGTTAACAAGTGTTTATGTCGGTAAATAAACTTAAATAAATAAATTTGAACATGTCTTAAATTTAATACTTCACTAAGCTTTGTTTCTAATGTTTACATTTATGATTGATTGGTGCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATGAGTCAAATATTTTGGATTCCTTTGGAATGAAAGGATTGTATCTGTCAGTAGGAGAAGCTGTGGCTGACATTTCATCATCGTGGAAAGCTCAGCCTTGA
Protein sequence

>MS.gene33360.t1

MGVNSNRVDPFETIKIQSEIPMYQTPLEIHKVRLPPQRTTLQKLRHRLSEIFFPDDPFHGFKNQTSFTKFLLALQYMFPIFQWGPQYSLYLFRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSVLGSSRHLGVGPVSIASLVMGSMLSESVSYSQDPILYLKLAFTATFFAGLFQSSLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTSKMQIVPVLVSVFKERDEWSWQTILLGFSFLAFLLITRHISLKRPKLFWISAAAPLTSVILSTILVFSMRHKINKIAIIGELPKGLNPPSSNMLYFSGPHLALAIKTGLVTGILSLTEGIAVGRTFASLQNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYRAAYKLWKVDKLDFLACVCSFFGVLFISVPLGLGVAVAISVFKILLHVSRPNTSVLGNIPGTPIFHNLNQYKEAIRIPAFIILAVESPIYFANATYLQERILRWVREEEERVVALNGSALKCIILDMTAVTGIDTSGIDTLCELRRRLEQKSLQLVLANPVGNVMEKLHESNILDSFGMKGLYLSVGEAVADISSSWKAQP