AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61200.t1 MTR_2g102243 99.536 647 3 0 3 649 1 647 0.0 1310
MS.gene61200.t1 MTR_2g102243 98.116 584 11 0 3 586 1 584 0.0 1165
MS.gene61200.t1 MTR_4g011970 82.317 656 107 2 1 649 1 654 0.0 1115
MS.gene61200.t1 MTR_4g084620 63.968 630 222 3 21 648 14 640 0.0 825
MS.gene61200.t1 MTR_4g084640 62.025 632 238 1 18 649 15 644 0.0 806
MS.gene61200.t1 MTR_7g095430 58.347 629 259 1 14 642 10 635 0.0 753
MS.gene61200.t1 MTR_1g071530 57.232 643 275 0 7 649 3 645 0.0 746
MS.gene61200.t1 MTR_5g061880 53.130 655 299 2 3 649 1 655 0.0 713
MS.gene61200.t1 MTR_7g095430 59.220 564 227 1 14 577 10 570 0.0 690
MS.gene61200.t1 MTR_2g008470 55.267 617 274 2 24 639 34 649 0.0 682
MS.gene61200.t1 MTR_2g008470 55.267 617 274 2 24 639 53 668 0.0 682
MS.gene61200.t1 MTR_3g073780 53.185 628 290 3 25 649 33 659 0.0 673
MS.gene61200.t1 MTR_3g073780 54.595 555 248 3 25 576 33 586 0.0 617
MS.gene61200.t1 MTR_6g086170 48.154 623 317 3 17 638 3 620 0.0 614
MS.gene61200.t1 MTR_3g073780 55.408 527 232 2 25 548 33 559 0.0 596
MS.gene61200.t1 MTR_5g061860 47.678 646 325 5 3 638 1 643 0.0 584
MS.gene61200.t1 MTR_3g087740 49.231 585 293 4 58 639 64 647 0.0 577
MS.gene61200.t1 MTR_3g073730 47.871 587 296 4 72 649 75 660 0.0 538
MS.gene61200.t1 MTR_5g061860 48.381 556 275 4 3 548 1 554 8.03e-176 512
MS.gene61200.t1 MTR_3g087730 41.069 655 358 10 13 647 12 658 5.17e-161 478
MS.gene61200.t1 MTR_7g022870 35.467 578 359 7 65 638 66 633 2.50e-115 361
MS.gene61200.t1 MTR_7g022870 37.103 504 304 6 55 557 56 547 1.26e-105 332
MS.gene61200.t1 MTR_6g024420 31.818 132 71 3 227 358 54 166 1.34e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61200.t1 AT3G15990 76.263 653 151 2 1 649 1 653 0.0 1028
MS.gene61200.t1 AT1G23090 64.355 620 220 1 24 642 3 622 0.0 822
MS.gene61200.t1 AT3G51895 58.643 619 255 1 25 642 20 638 0.0 759
MS.gene61200.t1 AT3G51895 58.643 619 255 1 25 642 65 683 0.0 759
MS.gene61200.t1 AT4G02700 56.331 616 268 1 25 639 10 625 0.0 685
MS.gene61200.t1 AT4G08620 53.760 625 287 2 25 648 23 646 0.0 672
MS.gene61200.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene61200.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene61200.t1 AT1G78000 56.423 615 267 1 25 638 28 642 0.0 664
MS.gene61200.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene61200.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene61200.t1 AT1G22150 54.272 632 287 2 13 642 18 649 0.0 662
MS.gene61200.t1 AT1G78000 56.897 580 249 1 25 603 28 607 0.0 634
MS.gene61200.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene61200.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene61200.t1 AT1G23090 63.878 490 176 1 154 642 1 490 0.0 634
MS.gene61200.t1 AT5G19600 47.611 628 318 4 13 638 2 620 0.0 618
MS.gene61200.t1 AT1G78000 57.143 553 236 1 25 576 28 580 0.0 607
MS.gene61200.t1 AT1G22150 54.770 566 254 2 13 576 18 583 0.0 603
MS.gene61200.t1 AT5G10180 47.557 614 316 5 30 638 57 669 0.0 550
MS.gene61200.t1 AT1G77990 48.443 578 287 5 69 638 89 663 0.0 535
MS.gene61200.t1 AT1G78000 57.759 464 195 1 25 487 28 491 3.17e-174 506
MS.gene61200.t1 AT1G78000 57.079 445 190 1 133 576 1 445 8.18e-163 475
MS.gene61200.t1 AT3G12520 34.202 614 382 11 31 638 13 610 2.43e-113 355
MS.gene61200.t1 AT3G12520 34.135 624 388 12 22 638 19 626 3.42e-113 355
MS.gene61200.t1 AT5G13550 35.253 573 353 8 72 638 79 639 1.10e-112 353
MS.gene61200.t1 AT3G12520 34.070 543 344 9 8 548 5 535 2.44e-100 317

Find 126 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGTTCTGATGTCATTTC+TGG 0.070395 2.2:-1631596 MS.gene61200:CDS
GTTACATATGTCGAAAATTT+TGG 0.105448 2.2:-1626981 MS.gene61200:CDS
TTGGATACCTTTGGATTTAA+AGG 0.129404 2.2:-1626962 MS.gene61200:CDS
GCAAACTTGCCTCCTATTAT+TGG 0.172651 2.2:-1630932 MS.gene61200:CDS
AGTTCCTTCATTTCTCATTT+TGG 0.202383 2.2:-1627657 MS.gene61200:CDS
ACCAGTTTCAATTGCATCTT+TGG 0.216974 2.2:-1630753 MS.gene61200:CDS
TGAGGAAACCAAAACTATTC+TGG 0.222148 2.2:-1629215 MS.gene61200:CDS
CAAACTATTGTTATGGGATT+TGG 0.225265 2.2:-1629416 MS.gene61200:CDS
CTGTTCCTTTCTGTACCTTT+AGG 0.241771 2.2:-1628056 MS.gene61200:CDS
TTCAATTGCATCTTTGGTTA+TGG 0.242829 2.2:-1630747 MS.gene61200:CDS
GGTTGACAAACTTGATTTCT+TGG 0.245825 2.2:-1628105 MS.gene61200:CDS
CTTTGTATTGGTTTATGTTA+TGG 0.247148 2.2:+1627690 None:intergenic
TTCACTGCCACCTTTGTTGC+TGG 0.254252 2.2:-1630662 MS.gene61200:CDS
AGTCTTCCTTCTCAGAAATA+AGG 0.295437 2.2:-1629145 MS.gene61200:CDS
CTCTTAAAGCTTCTTTGTAT+TGG 0.307202 2.2:+1627678 None:intergenic
GCTGAAGCCCAGAATAGTTT+TGG 0.328596 2.2:+1629207 None:intergenic
ATCATTATTGCTGCTGTGAT+TGG 0.334479 2.2:-1628164 MS.gene61200:CDS
TCCTACTCTTTATCTTCAAT+TGG 0.334852 2.2:-1630687 MS.gene61200:CDS
GAGGAAACCAAAACTATTCT+GGG 0.356834 2.2:-1629214 MS.gene61200:CDS
TTTCCTAAAACCAAAGTGTT+TGG 0.367277 2.2:+1627734 None:intergenic
GTCATGGCAAACTATTGTTA+TGG 0.367788 2.2:-1629423 MS.gene61200:CDS
AAGGACCATTGAAGTATAAC+AGG 0.367890 2.2:+1628922 None:intergenic
ACAAGTGGGCTTGAAACTTT+AGG 0.372523 2.2:-1627174 MS.gene61200:CDS
GATGCAAATTATTCCTGTAT+TGG 0.373222 2.2:-1630109 MS.gene61200:CDS
AGCAACACTGGTCGGTTTCA+TGG 0.373280 2.2:-1630202 MS.gene61200:CDS
GAAAGAATGACTGATGTTAA+AGG 0.373299 2.2:+1629177 None:intergenic
TCAATTGCATCTTTGGTTAT+GGG 0.374321 2.2:-1630746 MS.gene61200:CDS
AAAATTTGCAACAGAGTTTG+AGG 0.376454 2.2:-1629233 MS.gene61200:intron
CAGCAATTGAAAGGGTTACT+TGG 0.381616 2.2:-1630153 MS.gene61200:CDS
ATACTTCAATGGTCCTTACT+TGG 0.385099 2.2:-1628916 MS.gene61200:CDS
ACCAAAGATGCAATTGAAAC+TGG 0.387670 2.2:+1630752 None:intergenic
TCATGGCAAACTATTGTTAT+GGG 0.396502 2.2:-1629422 MS.gene61200:CDS
TTATGGAATATCTGTGTTCC+AGG 0.397023 2.2:+1627707 None:intergenic
GTCGAATTAGCGAAATAGAT+TGG 0.397884 2.2:+1627623 None:intergenic
GGTAAACGAACTTGATGAAT+TGG 0.398007 2.2:+1631788 None:intergenic
TACCCACACAGTCCAATAAT+AGG 0.405757 2.2:+1630920 None:intergenic
AAACGGTGTAAAGGATCATC+AGG 0.414499 2.2:+1631710 None:intergenic
TTGTTGAATGATGTTCTCTC+TGG 0.416692 2.2:+1631764 None:intergenic
AGAAGAAACTTTGTGAAAGA+TGG 0.416725 2.2:+1631677 None:intergenic
TTGGCTCTTGCTATCAAAAC+AGG 0.418557 2.2:-1628897 MS.gene61200:CDS
GGTTTATTCCAAGCATCTCT+TGG 0.419052 2.2:-1630641 MS.gene61200:CDS
TCTTCGGCAGATTGGGCACT+TGG 0.427078 2.2:-1628973 MS.gene61200:intron
TAAAACCAAAGTGTTTGGTC+TGG 0.436365 2.2:+1627739 None:intergenic
GCTAGAAAAGAGATCACTTC+AGG 0.438400 2.2:-1627136 MS.gene61200:intron
TGCGGTTTCTAATATAATCA+TGG 0.439032 2.2:-1628261 MS.gene61200:CDS
AGAGAGGCATGAGAAACAAA+AGG 0.448526 2.2:+1628219 None:intergenic
GGTCTCTGTTTACAAGCAAA+AGG 0.455202 2.2:-1630088 MS.gene61200:CDS
TTCTGCATACTGTGAGAGAT+AGG 0.461000 2.2:+1628859 None:intergenic
ATGGTTGCCAAGACTACATT+TGG 0.469754 2.2:+1628185 None:intergenic
AAATGGGGAACAAGAATTGA+AGG 0.470307 2.2:+1631651 None:intergenic
CCTGCTGCAGGATACTAAGA+TGG 0.477618 2.2:-1627492 MS.gene61200:intron
TACCTGAGGAATGGCGAGGC+TGG 0.478704 2.2:+1631562 None:intergenic
CAGATTGGGCACTTGGCAAA+AGG 0.480187 2.2:-1628966 MS.gene61200:CDS
CTATACACCAAATGTAGTCT+TGG 0.480440 2.2:-1628192 MS.gene61200:CDS
TGCCAGCCTCGCCATTCCTC+AGG 0.487005 2.2:-1631564 MS.gene61200:intron
TTGATAGCAAGAGCCAAGTA+AGG 0.495546 2.2:+1628903 None:intergenic
GAAACTTTGTGAAAGATGGT+TGG 0.495720 2.2:+1631681 None:intergenic
GTGAACCTGTTATACTTCAA+TGG 0.496085 2.2:-1628927 MS.gene61200:CDS
TTGAATGATGTTCTCTCTGG+TGG 0.500229 2.2:+1631767 None:intergenic
AAATGACATCAGAACGAAGA+AGG 0.501148 2.2:+1631600 None:intergenic
GTGTCACTACAGCAATTGAA+AGG 0.503444 2.2:-1630162 MS.gene61200:CDS
ACTTCATGCTATGTCACAAC+AGG 0.504420 2.2:-1628409 MS.gene61200:intron
AAGCATCTCTTGGTATACTA+AGG 0.506883 2.2:-1630631 MS.gene61200:intron
GTTAACAGCCGACCGAGAAA+AGG 0.511994 2.2:+1628304 None:intergenic
ACAGCCAAAATGAGAAATGA+AGG 0.513960 2.2:+1627653 None:intergenic
TTTGCTACTGCAGCTTGTGC+TGG 0.518208 2.2:-1627032 MS.gene61200:intron
ATTGGTATTATGAACATAGC+TGG 0.521101 2.2:-1628439 MS.gene61200:CDS
ACACTGGTCGGTTTCATGGC+CGG 0.523106 2.2:-1630198 MS.gene61200:CDS
CCATTGATATATGCTCTGCT+TGG 0.532486 2.2:-1630800 MS.gene61200:CDS
ATCAAAACAGGCATTGTCAC+AGG 0.532741 2.2:-1628885 MS.gene61200:CDS
TGTCTCCAGACCAAACACTT+TGG 0.535603 2.2:-1627744 MS.gene61200:CDS
AACAAAGAAATGATGGCCAT+TGG 0.536224 2.2:-1628457 MS.gene61200:CDS
TTAGTATACCAAGAGATGCT+TGG 0.538194 2.2:+1630633 None:intergenic
TCTGAGAAGGAAGACTAAGA+TGG 0.538988 2.2:+1629152 None:intergenic
ACTAAGATGGGTTCGAGAAG+AGG 0.542827 2.2:-1627479 MS.gene61200:CDS
GGATGGTAACAAAGAAATGA+TGG 0.543158 2.2:-1628464 MS.gene61200:CDS
TCGGCTGTTAACTACAATGC+TGG 0.543954 2.2:-1628293 MS.gene61200:CDS
CCAAGCAGAGCATATATCAA+TGG 0.545731 2.2:+1630800 None:intergenic
TTGTAAACAGAGACCAATAC+AGG 0.551560 2.2:+1630096 None:intergenic
CTTGTGCTGGTAAATCCTGT+TGG 0.553364 2.2:-1627019 MS.gene61200:CDS
CTGCTGCAGGATACTAAGAT+GGG 0.556954 2.2:-1627491 MS.gene61200:intron
TGTCACTACAGCAATTGAAA+GGG 0.559159 2.2:-1630161 MS.gene61200:CDS
GATGAGCCTTATTTCTGAGA+AGG 0.561522 2.2:+1629139 None:intergenic
TTTCTTTGTTACCATCCACT+TGG 0.567679 2.2:+1628470 None:intergenic
ACCGCAATACTGAGGCCTAA+AGG 0.567708 2.2:+1628041 None:intergenic
GAGCGTATAAAAGAATATAA+CGG 0.567847 2.2:-1627454 MS.gene61200:CDS
ACCTTTAGGCCTCAGTATTG+CGG 0.573360 2.2:-1628042 MS.gene61200:intron
AATGACATCAGAACGAAGAA+GGG 0.574823 2.2:+1631601 None:intergenic
ATAGAGTCCTTTAAATCCAA+AGG 0.579814 2.2:+1626955 None:intergenic
CTATCAAAAGCAACACTGGT+CGG 0.581691 2.2:-1630210 MS.gene61200:CDS
AGGAATGGCGAGGCTGGCAA+TGG 0.582040 2.2:+1631568 None:intergenic
GAGAGGCATGAGAAACAAAA+GGG 0.582465 2.2:+1628220 None:intergenic
AGTTCAAGACATGTTGGTGT+TGG 0.584677 2.2:-1630776 MS.gene61200:CDS
TTTCAGGAAGGAATTGCAGT+AGG 0.586893 2.2:-1628520 MS.gene61200:intron
CAATGTGTCTTGTTGTGAGT+AGG 0.589297 2.2:+1629381 None:intergenic
AAATCCTGTTGGAAATGTGA+TGG 0.589817 2.2:-1627008 MS.gene61200:CDS
AAGTATAACAGGTTCACTGA+TGG 0.594442 2.2:+1628933 None:intergenic
AATCACAGCAGCAATAATGA+TGG 0.594477 2.2:+1628166 None:intergenic
TTTCCTATCAAAAGCAACAC+TGG 0.594795 2.2:-1630214 MS.gene61200:CDS
TGTTTACAAGCAAAAGGATG+AGG 0.596601 2.2:-1630082 MS.gene61200:intron
TGACACAATGATAGCAGCAC+CGG 0.605213 2.2:+1630179 None:intergenic
AAAGGACTCTATCTCACAGT+GGG 0.606820 2.2:-1626944 MS.gene61200:CDS
TATAACAGGTTCACTGATGG+CGG 0.607462 2.2:+1628936 None:intergenic
AGCGGCATATAAACTGTGGA+AGG 0.607621 2.2:-1628126 MS.gene61200:CDS
CTTGGAAGTTCAAGACATGT+TGG 0.608273 2.2:-1630782 MS.gene61200:CDS
AGCTATGTTCATAATACCAA+TGG 0.612229 2.2:+1628441 None:intergenic
TTGGAATAAACCAGCAACAA+AGG 0.616151 2.2:+1630652 None:intergenic
GCCAATTGAAGATAAAGAGT+AGG 0.620777 2.2:+1630686 None:intergenic
TTGGTCTGGAGACATGAAGT+AGG 0.623137 2.2:+1627753 None:intergenic
CCTTCTCTAACCTCTCTCGA+AGG 0.623428 2.2:+1627597 None:intergenic
ATTCGACTTACCTTCGAGAG+AGG 0.627046 2.2:-1627607 MS.gene61200:intron
CCACACAGTCCAATAATAGG+AGG 0.627903 2.2:+1630923 None:intergenic
TGAGGCCTAAAGGTACAGAA+AGG 0.628258 2.2:+1628051 None:intergenic
AATGGGGAACAAGAATTGAA+GGG 0.630184 2.2:+1631652 None:intergenic
TTCAGCTTACCGCAATACTG+AGG 0.632493 2.2:+1628033 None:intergenic
GTCACAGCAATAGACACAAG+TGG 0.637346 2.2:-1627189 MS.gene61200:CDS
AGCAGAGCATATATCAATGG+TGG 0.637500 2.2:+1630803 None:intergenic
TCACAGCAATAGACACAAGT+GGG 0.640720 2.2:-1627188 MS.gene61200:CDS
ATCAAGCGGCATATAAACTG+TGG 0.658235 2.2:-1628130 MS.gene61200:CDS
TTTGGTGTATAGTAGAAGAG+AGG 0.666763 2.2:+1628203 None:intergenic
GAATAAACCAGCAACAAAGG+TGG 0.668265 2.2:+1630655 None:intergenic
TTTATACCTGAGGAATGGCG+AGG 0.677577 2.2:+1631558 None:intergenic
TGGACTAATAGATTATCAAG+CGG 0.690120 2.2:-1628144 MS.gene61200:CDS
AACGGTGTAAAGGATCATCA+GGG 0.693572 2.2:+1631711 None:intergenic
CAATGCTGGAGCACAGACTG+CGG 0.704420 2.2:-1628279 MS.gene61200:CDS
TAAAGGACTCTATCTCACAG+TGG 0.722085 2.2:-1626945 MS.gene61200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTAAATTTAAATGATT+TGG - chr2.2:1630054-1630073 MS.gene61200:intron 10.0%
!! ATTATTAATATCAATTTACT+TGG - chr2.2:1630940-1630959 MS.gene61200:CDS 10.0%
!! GAAATTTGAGAATTTATTTA+TGG - chr2.2:1628420-1628439 MS.gene61200:CDS 15.0%
!! GATTGAATGATTATATAAAA+AGG - chr2.2:1630848-1630867 MS.gene61200:intron 15.0%
!! TATTTATGGTTATTTATTGA+AGG - chr2.2:1628434-1628453 MS.gene61200:CDS 15.0%
!!! GTAATTGTTATTAATTATGA+TGG - chr2.2:1627892-1627911 MS.gene61200:intron 15.0%
!! AAAAATTAGCATAGTAAGAT+TGG - chr2.2:1628218-1628237 MS.gene61200:CDS 20.0%
!! AAATAATACTACATGAGATA+CGG + chr2.2:1631447-1631466 None:intergenic 20.0%
!! AAATTCAGTCCAAAAAAAAA+AGG + chr2.2:1627759-1627778 None:intergenic 20.0%
!! ATGAGAAATGAAGAATATTA+TGG + chr2.2:1628924-1628943 None:intergenic 20.0%
!! CATGTTACATACATAAATAT+AGG - chr2.2:1629949-1629968 MS.gene61200:intron 20.0%
!!! AATGTTATTTGACTTTGATT+TGG - chr2.2:1629461-1629480 MS.gene61200:intron 20.0%
!!! ATTGATATATTGATTTCAGA+AGG - chr2.2:1631650-1631669 MS.gene61200:CDS 20.0%
!!! TATAAAATGTTTTACACTGT+TGG + chr2.2:1630796-1630815 None:intergenic 20.0%
!!! TGAATAATGGTAGATTTTTT+AGG + chr2.2:1631676-1631695 None:intergenic 20.0%
! AACATCTGTGTCAAAAAAAA+AGG + chr2.2:1631421-1631440 None:intergenic 25.0%
! AGAAGTTAGAAAGTGAATAA+TGG + chr2.2:1631689-1631708 None:intergenic 25.0%
! AGAATATTATGGATTCGAAT+TGG + chr2.2:1628913-1628932 None:intergenic 25.0%
! AGCATCACAATATTTAAAAG+TGG + chr2.2:1629249-1629268 None:intergenic 25.0%
! AGTCAGTAAACTAATACATT+TGG + chr2.2:1630765-1630784 None:intergenic 25.0%
! ATAAATATAGGACACAACTT+AGG - chr2.2:1629961-1629980 MS.gene61200:intron 25.0%
! ATATTCCTATGAAAAGATTG+TGG + chr2.2:1629128-1629147 None:intergenic 25.0%
! GAGCGTATAAAAGAATATAA+CGG - chr2.2:1631298-1631317 MS.gene61200:intron 25.0%
! GTAAAAAAGTCACATAAGTA+CGG - chr2.2:1628240-1628259 MS.gene61200:CDS 25.0%
! TCTCGTAAATTCAATTCAAA+TGG - chr2.2:1628852-1628871 MS.gene61200:intron 25.0%
! TGATATGTGATTAATGTATG+TGG - chr2.2:1631497-1631516 MS.gene61200:intron 25.0%
! TTCATCATTCACAAAACATA+GGG + chr2.2:1628474-1628493 None:intergenic 25.0%
! TTTCATCATTCACAAAACAT+AGG + chr2.2:1628475-1628494 None:intergenic 25.0%
! TTTCATTAGACTTACAACAT+TGG - chr2.2:1631363-1631382 MS.gene61200:intron 25.0%
!! GTTACATATGTCGAAAATTT+TGG - chr2.2:1631771-1631790 MS.gene61200:CDS 25.0%
!! TATATTGCATGATAATGCTA+TGG - chr2.2:1630906-1630925 MS.gene61200:intron 25.0%
!! TTTCATGAAGAGAGTATAAT+GGG - chr2.2:1629223-1629242 MS.gene61200:intron 25.0%
!!! ATTTCTAGTTTCATGATTTC+TGG - chr2.2:1627863-1627882 MS.gene61200:intron 25.0%
!!! CTTTGTATTGGTTTATGTTA+TGG + chr2.2:1631065-1631084 None:intergenic 25.0%
!!! TCACTTTTGCCTTTTTTTTT+TGG - chr2.2:1627747-1627766 MS.gene61200:CDS 25.0%
!!! TTCTAAAATTAAAGCGTGTT+CGG - chr2.2:1627549-1627568 MS.gene61200:intron 25.0%
!!! TTTTACAACTATTTTTGCAG+TGG - chr2.2:1629307-1629326 MS.gene61200:intron 25.0%
AAAATTTGCAACAGAGTTTG+AGG - chr2.2:1629519-1629538 MS.gene61200:intron 30.0%
ACAAAATTTGCCTATGTTTC+AGG - chr2.2:1630216-1630235 MS.gene61200:CDS 30.0%
AGAAGAAACTTTGTGAAAGA+TGG + chr2.2:1627078-1627097 None:intergenic 30.0%
AGCACTTAAAAATTACCAAG+TGG - chr2.2:1630267-1630286 MS.gene61200:intron 30.0%
AGCTATGTTCATAATACCAA+TGG + chr2.2:1630314-1630333 None:intergenic 30.0%
ATAGAGTCCTTTAAATCCAA+AGG + chr2.2:1631800-1631819 None:intergenic 30.0%
ATGCTACAATAAAACCTGAT+TGG + chr2.2:1630826-1630845 None:intergenic 30.0%
ATTGGTATTATGAACATAGC+TGG - chr2.2:1630313-1630332 MS.gene61200:intron 30.0%
CAAACTATTGTTATGGGATT+TGG - chr2.2:1629336-1629355 MS.gene61200:intron 30.0%
CTCTTAAAGCTTCTTTGTAT+TGG + chr2.2:1631077-1631096 None:intergenic 30.0%
CTTAAAAATTACCAAGTGGA+TGG - chr2.2:1630271-1630290 MS.gene61200:intron 30.0%
GAAAGAATGACTGATGTTAA+AGG + chr2.2:1629578-1629597 None:intergenic 30.0%
GATGCAAATTATTCCTGTAT+TGG - chr2.2:1628643-1628662 MS.gene61200:intron 30.0%
GCTCTTAATCATATGAATCA+TGG + chr2.2:1631236-1631255 None:intergenic 30.0%
TCAATTGCATCTTTGGTTAT+GGG - chr2.2:1628006-1628025 MS.gene61200:intron 30.0%
TCATGGCAAACTATTGTTAT+GGG - chr2.2:1629330-1629349 MS.gene61200:intron 30.0%
TCCTACTCTTTATCTTCAAT+TGG - chr2.2:1628065-1628084 MS.gene61200:CDS 30.0%
TCTTAGATAACTAAGTCATG+TGG + chr2.2:1630391-1630410 None:intergenic 30.0%
TGCGGTTTCTAATATAATCA+TGG - chr2.2:1630491-1630510 MS.gene61200:intron 30.0%
TGGACTAATAGATTATCAAG+CGG - chr2.2:1630608-1630627 MS.gene61200:intron 30.0%
TTAAGTAAAACAGCATCATG+TGG + chr2.2:1630177-1630196 None:intergenic 30.0%
TTCAATTGCATCTTTGGTTA+TGG - chr2.2:1628005-1628024 MS.gene61200:intron 30.0%
TTGATTCTCTGTGTATTCTT+CGG - chr2.2:1629763-1629782 MS.gene61200:intron 30.0%
TTGGATACCTTTGGATTTAA+AGG - chr2.2:1631790-1631809 MS.gene61200:CDS 30.0%
TTGTCTCTTGATATATTGCA+GGG - chr2.2:1627778-1627797 MS.gene61200:CDS 30.0%
TTTGTCTCTTGATATATTGC+AGG - chr2.2:1627777-1627796 MS.gene61200:CDS 30.0%
! AGTTCCTTCATTTCTCATTT+TGG - chr2.2:1631095-1631114 MS.gene61200:intron 30.0%
! ATATAGCAACCTGAAGATTT+TGG + chr2.2:1630966-1630985 None:intergenic 30.0%
! CTTTAAGAATGCTTGGAAAT+TGG - chr2.2:1628720-1628739 MS.gene61200:intron 30.0%
! CTTTCATGAAGAGAGTATAA+TGG - chr2.2:1629222-1629241 MS.gene61200:CDS 30.0%
! TCGAAAATTTTGGATACCTT+TGG - chr2.2:1631781-1631800 MS.gene61200:CDS 30.0%
! TCTTAAAGTGCTAAACTACA+TGG + chr2.2:1628708-1628727 None:intergenic 30.0%
! TCTTTTGAATTTGTGTATGC+AGG - chr2.2:1628498-1628517 MS.gene61200:CDS 30.0%
! TGCATAATTTTAGACATGAC+AGG - chr2.2:1631334-1631353 MS.gene61200:intron 30.0%
! TTTAGCACTTTAAGAATGCT+TGG - chr2.2:1628713-1628732 MS.gene61200:intron 30.0%
! TTTCCTAAAACCAAAGTGTT+TGG + chr2.2:1631021-1631040 None:intergenic 30.0%
! TTTTATACAGTCATCCAATC+AGG - chr2.2:1630809-1630828 MS.gene61200:CDS 30.0%
!! CAGAAAAGTGTAACAAGTTT+TGG + chr2.2:1629919-1629938 None:intergenic 30.0%
!!! AAGATGGTTGGTTTTTGAAA+CGG + chr2.2:1627062-1627081 None:intergenic 30.0%
AAACACGACACTAACATCAA+TGG + chr2.2:1627388-1627407 None:intergenic 35.0%
AAATCCTGTTGGAAATGTGA+TGG - chr2.2:1631744-1631763 MS.gene61200:CDS 35.0%
AAATGACATCAGAACGAAGA+AGG + chr2.2:1627155-1627174 None:intergenic 35.0%
AAATGGGGAACAAGAATTGA+AGG + chr2.2:1627104-1627123 None:intergenic 35.0%
AACAAAGAAATGATGGCCAT+TGG - chr2.2:1630295-1630314 MS.gene61200:intron 35.0%
AAGCATCTCTTGGTATACTA+AGG - chr2.2:1628121-1628140 MS.gene61200:CDS 35.0%
AAGGAACAGAACACCAAAAA+AGG + chr2.2:1630685-1630704 None:intergenic 35.0%
AAGGACCATTGAAGTATAAC+AGG + chr2.2:1629833-1629852 None:intergenic 35.0%
AAGTATAACAGGTTCACTGA+TGG + chr2.2:1629822-1629841 None:intergenic 35.0%
AATCACAGCAGCAATAATGA+TGG + chr2.2:1630589-1630608 None:intergenic 35.0%
AATGACATCAGAACGAAGAA+GGG + chr2.2:1627154-1627173 None:intergenic 35.0%
AATGGGGAACAAGAATTGAA+GGG + chr2.2:1627103-1627122 None:intergenic 35.0%
AATTTGCCTATGTTTCAGGA+AGG - chr2.2:1630220-1630239 MS.gene61200:CDS 35.0%
ACAGCCAAAATGAGAAATGA+AGG + chr2.2:1631102-1631121 None:intergenic 35.0%
ACCAAAGATGCAATTGAAAC+TGG + chr2.2:1628003-1628022 None:intergenic 35.0%
ACCAGTTTCAATTGCATCTT+TGG - chr2.2:1627999-1628018 MS.gene61200:intron 35.0%
ACCGCGTGATAAATTATAAC+CGG + chr2.2:1630019-1630038 None:intergenic 35.0%
ACCGGTTATAATTTATCACG+CGG - chr2.2:1630015-1630034 MS.gene61200:intron 35.0%
AGTCTTCCTTCTCAGAAATA+AGG - chr2.2:1629607-1629626 MS.gene61200:intron 35.0%
AGTGAAATCACAAACACATG+CGG + chr2.2:1628315-1628334 None:intergenic 35.0%
ATACTTCAATGGTCCTTACT+TGG - chr2.2:1629836-1629855 MS.gene61200:intron 35.0%
ATCATTATTGCTGCTGTGAT+TGG - chr2.2:1630588-1630607 MS.gene61200:intron 35.0%
ATCCTTCACTTAGCAATCAT+GGG + chr2.2:1629178-1629197 None:intergenic 35.0%
ATTGATGTTAGTGTCGTGTT+TGG - chr2.2:1627387-1627406 MS.gene61200:intron 35.0%
CTATACACCAAATGTAGTCT+TGG - chr2.2:1630560-1630579 MS.gene61200:intron 35.0%
GAAACTTTGTGAAAGATGGT+TGG + chr2.2:1627074-1627093 None:intergenic 35.0%
GAGGAAACCAAAACTATTCT+GGG - chr2.2:1629538-1629557 MS.gene61200:intron 35.0%
GCCAATTGAAGATAAAGAGT+AGG + chr2.2:1628069-1628088 None:intergenic 35.0%
GGATGGTAACAAAGAAATGA+TGG - chr2.2:1630288-1630307 MS.gene61200:intron 35.0%
GGTAAACGAACTTGATGAAT+TGG + chr2.2:1626967-1626986 None:intergenic 35.0%
GGTTGACAAACTTGATTTCT+TGG - chr2.2:1630647-1630666 MS.gene61200:CDS 35.0%
GTCATGGCAAACTATTGTTA+TGG - chr2.2:1629329-1629348 MS.gene61200:intron 35.0%
GTCGAATTAGCGAAATAGAT+TGG + chr2.2:1631132-1631151 None:intergenic 35.0%
GTGAACCTGTTATACTTCAA+TGG - chr2.2:1629825-1629844 MS.gene61200:intron 35.0%
TCATTTCTCATTGTTGTGTG+TGG - chr2.2:1628933-1628952 MS.gene61200:CDS 35.0%
TCCTATGAAAAGATTGTGGT+GGG + chr2.2:1629124-1629143 None:intergenic 35.0%
TGAATTTGTGTATGCAGGTT+AGG - chr2.2:1628503-1628522 MS.gene61200:CDS 35.0%
TGAGAACCCCATTGAAAAAT+GGG + chr2.2:1627120-1627139 None:intergenic 35.0%
TGAGGAAACCAAAACTATTC+TGG - chr2.2:1629537-1629556 MS.gene61200:intron 35.0%
TGTCACTACAGCAATTGAAA+GGG - chr2.2:1628591-1628610 MS.gene61200:intron 35.0%
TGTTTACAAGCAAAAGGATG+AGG - chr2.2:1628670-1628689 MS.gene61200:intron 35.0%
TTAGTATACCAAGAGATGCT+TGG + chr2.2:1628122-1628141 None:intergenic 35.0%
TTATGGAATATCTGTGTTCC+AGG + chr2.2:1631048-1631067 None:intergenic 35.0%
TTCCTATGAAAAGATTGTGG+TGG + chr2.2:1629125-1629144 None:intergenic 35.0%
TTGGAATAAACCAGCAACAA+AGG + chr2.2:1628103-1628122 None:intergenic 35.0%
TTGTAAACAGAGACCAATAC+AGG + chr2.2:1628659-1628678 None:intergenic 35.0%
TTGTTGAATGATGTTCTCTC+TGG + chr2.2:1626991-1627010 None:intergenic 35.0%
TTTACTTGGCCAAAATCTTC+AGG - chr2.2:1630954-1630973 MS.gene61200:CDS 35.0%
TTTCCTATCAAAAGCAACAC+TGG - chr2.2:1628538-1628557 MS.gene61200:intron 35.0%
TTTCTTTGTTACCATCCACT+TGG + chr2.2:1630285-1630304 None:intergenic 35.0%
! GTTAGTGTGTTTTATACCTG+AGG + chr2.2:1627207-1627226 None:intergenic 35.0%
! TAAAACCAAAGTGTTTGGTC+TGG + chr2.2:1631016-1631035 None:intergenic 35.0%
! TGTGTTTTATACCTGAGGAA+TGG + chr2.2:1627202-1627221 None:intergenic 35.0%
! TTTGGTGTATAGTAGAAGAG+AGG + chr2.2:1630552-1630571 None:intergenic 35.0%
! TTTTCCATCACATTTCCAAC+AGG + chr2.2:1631751-1631770 None:intergenic 35.0%
!! CAACTTAGGTGTTGTTCTAT+AGG - chr2.2:1629975-1629994 MS.gene61200:intron 35.0%
!! CTTGTTCCCCATTTTTCAAT+GGG - chr2.2:1627110-1627129 MS.gene61200:intron 35.0%
!! TCTTGTTCCCCATTTTTCAA+TGG - chr2.2:1627109-1627128 MS.gene61200:intron 35.0%
!! TTGTTCCCCATTTTTCAATG+GGG - chr2.2:1627111-1627130 MS.gene61200:intron 35.0%
!!! AACTATTTTTGCAGTGGTCA+TGG - chr2.2:1629313-1629332 MS.gene61200:intron 35.0%
!!! AGACCAAACACTTTGGTTTT+AGG - chr2.2:1631015-1631034 MS.gene61200:intron 35.0%
!!! TGGTTTTTGAAACGGTGTAA+AGG + chr2.2:1627054-1627073 None:intergenic 35.0%
!!! TGTTATGGGATTTGGCTTTT+TGG - chr2.2:1629344-1629363 MS.gene61200:intron 35.0%
!!! TTGGTTTTAGGAAACATACC+TGG - chr2.2:1631027-1631046 MS.gene61200:intron 35.0%
AAACGGTGTAAAGGATCATC+AGG + chr2.2:1627045-1627064 None:intergenic 40.0%
AAAGGACTCTATCTCACAGT+GGG - chr2.2:1631808-1631827 MS.gene61200:CDS 40.0%
AACGGTGTAAAGGATCATCA+GGG + chr2.2:1627044-1627063 None:intergenic 40.0%
ACACTATGCAAGACTAACAC+CGG + chr2.2:1627415-1627434 None:intergenic 40.0%
ACTTCATGCTATGTCACAAC+AGG - chr2.2:1630343-1630362 MS.gene61200:intron 40.0%
AGCAGAGCATATATCAATGG+TGG + chr2.2:1627952-1627971 None:intergenic 40.0%
AGTTCAAGACATGTTGGTGT+TGG - chr2.2:1627976-1627995 MS.gene61200:intron 40.0%
ATCAAGCGGCATATAAACTG+TGG - chr2.2:1630622-1630641 MS.gene61200:intron 40.0%
ATGGTTGCCAAGACTACATT+TGG + chr2.2:1630570-1630589 None:intergenic 40.0%
CAGCAATTGAAAGGGTTACT+TGG - chr2.2:1628599-1628618 MS.gene61200:intron 40.0%
CATAAGTACGGTCTGACATA+TGG - chr2.2:1628252-1628271 MS.gene61200:CDS 40.0%
CATCCTTCACTTAGCAATCA+TGG + chr2.2:1629179-1629198 None:intergenic 40.0%
CATGATTGCTAAGTGAAGGA+TGG - chr2.2:1629177-1629196 MS.gene61200:CDS 40.0%
CCAAGCAGAGCATATATCAA+TGG + chr2.2:1627955-1627974 None:intergenic 40.0%
CCATTGATATATGCTCTGCT+TGG - chr2.2:1627952-1627971 MS.gene61200:intron 40.0%
CTATCAAAAGCAACACTGGT+CGG - chr2.2:1628542-1628561 MS.gene61200:intron 40.0%
CTCCTATTATTGGACTGTGT+GGG - chr2.2:1627830-1627849 MS.gene61200:intron 40.0%
CTGAGAACCCCATTGAAAAA+TGG + chr2.2:1627121-1627140 None:intergenic 40.0%
CTGTTCCTTTCTGTACCTTT+AGG - chr2.2:1630696-1630715 MS.gene61200:CDS 40.0%
CTTCATATTGAAGACGTGTC+TGG - chr2.2:1627246-1627265 MS.gene61200:intron 40.0%
CTTGGAAGTTCAAGACATGT+TGG - chr2.2:1627970-1627989 MS.gene61200:intron 40.0%
GAATAAACCAGCAACAAAGG+TGG + chr2.2:1628100-1628119 None:intergenic 40.0%
GAATATAGTCGCGCATTTCT+CGG + chr2.2:1627517-1627536 None:intergenic 40.0%
GAGAAAGTCTACATTCTTGC+AGG - chr2.2:1630423-1630442 MS.gene61200:intron 40.0%
GAGAACCCCATTGAAAAATG+GGG + chr2.2:1627119-1627138 None:intergenic 40.0%
GCAAACTTGCCTCCTATTAT+TGG - chr2.2:1627820-1627839 MS.gene61200:intron 40.0%
GCAATTCCTTCCTGAAACAT+AGG + chr2.2:1630229-1630248 None:intergenic 40.0%
GCTAGAAAAGAGATCACTTC+AGG - chr2.2:1631616-1631635 MS.gene61200:CDS 40.0%
GGTCTCTGTTTACAAGCAAA+AGG - chr2.2:1628664-1628683 MS.gene61200:intron 40.0%
GGTTTATTCCAAGCATCTCT+TGG - chr2.2:1628111-1628130 MS.gene61200:CDS 40.0%
GTACTACTTGTTCTGTTCAC+CGG - chr2.2:1629997-1630016 MS.gene61200:intron 40.0%
TAAAGGACTCTATCTCACAG+TGG - chr2.2:1631807-1631826 MS.gene61200:CDS 40.0%
TACCCACACAGTCCAATAAT+AGG + chr2.2:1627835-1627854 None:intergenic 40.0%
TATAACAGGTTCACTGATGG+CGG + chr2.2:1629819-1629838 None:intergenic 40.0%
TCACAGCAATAGACACAAGT+GGG - chr2.2:1631564-1631583 MS.gene61200:intron 40.0%
TCCTTCACTTAGCAATCATG+GGG + chr2.2:1629177-1629196 None:intergenic 40.0%
TCTGAGAAGGAAGACTAAGA+TGG + chr2.2:1629603-1629622 None:intergenic 40.0%
TGTGTATTCTTCGGCAGATT+GGG - chr2.2:1629772-1629791 MS.gene61200:intron 40.0%
TTCTGCATACTGTGAGAGAT+AGG + chr2.2:1629896-1629915 None:intergenic 40.0%
TTGAATGATGTTCTCTCTGG+TGG + chr2.2:1626988-1627007 None:intergenic 40.0%
TTTCAGGAAGGAATTGCAGT+AGG - chr2.2:1630232-1630251 MS.gene61200:CDS 40.0%
! ACAAGTGGGCTTGAAACTTT+AGG - chr2.2:1631578-1631597 MS.gene61200:CDS 40.0%
! AGAGAGGCATGAGAAACAAA+AGG + chr2.2:1630536-1630555 None:intergenic 40.0%
! AGTGTAACCACGTGTTTTGT+CGG + chr2.2:1627341-1627360 None:intergenic 40.0%
! ATCAAAACAGGCATTGTCAC+AGG - chr2.2:1629867-1629886 MS.gene61200:intron 40.0%
! CAATGTGTCTTGTTGTGAGT+AGG + chr2.2:1629374-1629393 None:intergenic 40.0%
! CATGATAATGCTATGGCATG+TGG - chr2.2:1630913-1630932 MS.gene61200:intron 40.0%
! CTTCGTTCTGATGTCATTTC+TGG - chr2.2:1627156-1627175 MS.gene61200:CDS 40.0%
! GAGAGGCATGAGAAACAAAA+GGG + chr2.2:1630535-1630554 None:intergenic 40.0%
! GTGTCACTACAGCAATTGAA+AGG - chr2.2:1628590-1628609 MS.gene61200:intron 40.0%
! TCCCACCACAATCTTTTCAT+AGG - chr2.2:1629120-1629139 MS.gene61200:intron 40.0%
! TTCTTGCAGGATCCTTTTCT+CGG - chr2.2:1630436-1630455 MS.gene61200:intron 40.0%
! TTGATAGCAAGAGCCAAGTA+AGG + chr2.2:1629852-1629871 None:intergenic 40.0%
! TTGGCTCTTGCTATCAAAAC+AGG - chr2.2:1629855-1629874 MS.gene61200:intron 40.0%
!! GATGAGCCTTATTTCTGAGA+AGG + chr2.2:1629616-1629635 None:intergenic 40.0%
ACCCCATGATTGCTAAGTGA+AGG - chr2.2:1629173-1629192 MS.gene61200:CDS 45.0%
ACCTTTAGGCCTCAGTATTG+CGG - chr2.2:1630710-1630729 MS.gene61200:CDS 45.0%
AGCGGCATATAAACTGTGGA+AGG - chr2.2:1630626-1630645 MS.gene61200:intron 45.0%
AGTCGTATGTCTCAAGTGTC+AGG + chr2.2:1627274-1627293 None:intergenic 45.0%
ATGGATTCGAATTGGCGTTC+AGG + chr2.2:1628905-1628924 None:intergenic 45.0%
ATTCGACTTACCTTCGAGAG+AGG - chr2.2:1631145-1631164 MS.gene61200:intron 45.0%
CCACACAGTCCAATAATAGG+AGG + chr2.2:1627832-1627851 None:intergenic 45.0%
CCTCCTATTATTGGACTGTG+TGG - chr2.2:1627829-1627848 MS.gene61200:intron 45.0%
CTAATGTCCGACAAAACACG+TGG - chr2.2:1627331-1627350 MS.gene61200:intron 45.0%
CTGCTGCAGGATACTAAGAT+GGG - chr2.2:1631261-1631280 MS.gene61200:intron 45.0%
CTGTGTATTCTTCGGCAGAT+TGG - chr2.2:1629771-1629790 MS.gene61200:intron 45.0%
GTCACAGCAATAGACACAAG+TGG - chr2.2:1631563-1631582 MS.gene61200:intron 45.0%
TCGGCTGTTAACTACAATGC+TGG - chr2.2:1630459-1630478 MS.gene61200:intron 45.0%
TGACACAATGATAGCAGCAC+CGG + chr2.2:1628576-1628595 None:intergenic 45.0%
TGTCTCCAGACCAAACACTT+TGG - chr2.2:1631008-1631027 MS.gene61200:intron 45.0%
TTAGCAATCATGGGGTGCAA+GGG + chr2.2:1629169-1629188 None:intergenic 45.0%
TTATTACCGTCGTGTCTGTC+AGG - chr2.2:1627629-1627648 MS.gene61200:CDS 45.0%
TTCAGCTTACCGCAATACTG+AGG + chr2.2:1630722-1630741 None:intergenic 45.0%
TTGGTCTGGAGACATGAAGT+AGG + chr2.2:1631002-1631021 None:intergenic 45.0%
TTTATACCTGAGGAATGGCG+AGG + chr2.2:1627197-1627216 None:intergenic 45.0%
! ACCAAAAAAGGAGCACATGC+AGG + chr2.2:1630673-1630692 None:intergenic 45.0%
! ACTAAGATGGGTTCGAGAAG+AGG - chr2.2:1631273-1631292 MS.gene61200:intron 45.0%
! CTTGTGCTGGTAAATCCTGT+TGG - chr2.2:1631733-1631752 MS.gene61200:CDS 45.0%
! GCTGAAGCCCAGAATAGTTT+TGG + chr2.2:1629548-1629567 None:intergenic 45.0%
! TGAGGCCTAAAGGTACAGAA+AGG + chr2.2:1630704-1630723 None:intergenic 45.0%
!! ATTAAAGCGTGTTCGGTGTC+CGG - chr2.2:1627556-1627575 MS.gene61200:intron 45.0%
!!! CGACCAGTGTTGCTTTTGAT+AGG + chr2.2:1628544-1628563 None:intergenic 45.0%
!! ATATAAAAAAATTGAAATAT+TGG - chr2.2:1629711-1629730 MS.gene61200:intron 5.0%
ACCGCAATACTGAGGCCTAA+AGG + chr2.2:1630714-1630733 None:intergenic 50.0%
CAAACACCTGACAGACACGA+CGG + chr2.2:1627638-1627657 None:intergenic 50.0%
CAGATTGGGCACTTGGCAAA+AGG - chr2.2:1629786-1629805 MS.gene61200:intron 50.0%
CATGTCTCACCGATAGACAC+CGG + chr2.2:1627578-1627597 None:intergenic 50.0%
CCATCTTAGTATCCTGCAGC+AGG + chr2.2:1631263-1631282 None:intergenic 50.0%
CCTGCTGCAGGATACTAAGA+TGG - chr2.2:1631260-1631279 MS.gene61200:intron 50.0%
CCTTCGAGAGAGGTTAGAGA+AGG - chr2.2:1631155-1631174 MS.gene61200:intron 50.0%
CCTTCTCTAACCTCTCTCGA+AGG + chr2.2:1631158-1631177 None:intergenic 50.0%
CTTAGCAATCATGGGGTGCA+AGG + chr2.2:1629170-1629189 None:intergenic 50.0%
GTTAACAGCCGACCGAGAAA+AGG + chr2.2:1630451-1630470 None:intergenic 50.0%
TTAAGAGCTTCTCCTGCTGC+AGG - chr2.2:1631248-1631267 MS.gene61200:intron 50.0%
TTCACTGCCACCTTTGTTGC+TGG - chr2.2:1628090-1628109 MS.gene61200:CDS 50.0%
TTTGCTACTGCAGCTTGTGC+TGG - chr2.2:1631720-1631739 MS.gene61200:CDS 50.0%
! AGCAACACTGGTCGGTTTCA+TGG - chr2.2:1628550-1628569 MS.gene61200:intron 50.0%
! TGCAGGATCCTTTTCTCGGT+CGG - chr2.2:1630440-1630459 MS.gene61200:intron 50.0%
!! GTTAGTGTCGTGTTTGGTGC+CGG - chr2.2:1627393-1627412 MS.gene61200:intron 50.0%
!!! GCCTGCATGTGCTCCTTTTT+TGG - chr2.2:1630669-1630688 MS.gene61200:CDS 50.0%
CAATGCTGGAGCACAGACTG+CGG - chr2.2:1630473-1630492 MS.gene61200:intron 55.0%
TCTTCGGCAGATTGGGCACT+TGG - chr2.2:1629779-1629798 MS.gene61200:intron 55.0%
! ACACTGGTCGGTTTCATGGC+CGG - chr2.2:1628554-1628573 MS.gene61200:intron 55.0%
!! GTTCGGTGTCCGGTGTCTAT+CGG - chr2.2:1627566-1627585 MS.gene61200:intron 55.0%
AGGAATGGCGAGGCTGGCAA+TGG + chr2.2:1627187-1627206 None:intergenic 60.0%
TACCTGAGGAATGGCGAGGC+TGG + chr2.2:1627193-1627212 None:intergenic 60.0%
TGCCAGCCTCGCCATTCCTC+AGG - chr2.2:1627188-1627207 MS.gene61200:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1626898 1631876 1626898 ID=MS.gene61200
chr2.2 mRNA 1626898 1631876 1626898 ID=MS.gene61200.t1;Parent=MS.gene61200
chr2.2 exon 1631565 1631876 1631565 ID=MS.gene61200.t1.exon1;Parent=MS.gene61200.t1
chr2.2 CDS 1631565 1631876 1631565 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1630927 1630975 1630927 ID=MS.gene61200.t1.exon2;Parent=MS.gene61200.t1
chr2.2 CDS 1630927 1630975 1630927 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1630632 1630839 1630632 ID=MS.gene61200.t1.exon3;Parent=MS.gene61200.t1
chr2.2 CDS 1630632 1630839 1630632 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1630083 1630254 1630083 ID=MS.gene61200.t1.exon4;Parent=MS.gene61200.t1
chr2.2 CDS 1630083 1630254 1630083 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1629382 1629447 1629382 ID=MS.gene61200.t1.exon5;Parent=MS.gene61200.t1
chr2.2 CDS 1629382 1629447 1629382 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1629128 1629241 1629128 ID=MS.gene61200.t1.exon6;Parent=MS.gene61200.t1
chr2.2 CDS 1629128 1629241 1629128 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1628869 1628985 1628869 ID=MS.gene61200.t1.exon7;Parent=MS.gene61200.t1
chr2.2 CDS 1628869 1628985 1628869 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1628410 1628536 1628410 ID=MS.gene61200.t1.exon8;Parent=MS.gene61200.t1
chr2.2 CDS 1628410 1628536 1628410 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1628043 1628329 1628043 ID=MS.gene61200.t1.exon9;Parent=MS.gene61200.t1
chr2.2 CDS 1628043 1628329 1628043 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1627608 1627798 1627608 ID=MS.gene61200.t1.exon10;Parent=MS.gene61200.t1
chr2.2 CDS 1627608 1627798 1627608 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1627419 1627504 1627419 ID=MS.gene61200.t1.exon11;Parent=MS.gene61200.t1
chr2.2 CDS 1627419 1627504 1627419 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1627137 1627213 1627137 ID=MS.gene61200.t1.exon12;Parent=MS.gene61200.t1
chr2.2 CDS 1627137 1627213 1627137 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
chr2.2 exon 1626898 1627041 1626898 ID=MS.gene61200.t1.exon13;Parent=MS.gene61200.t1
chr2.2 CDS 1626898 1627041 1626898 ID=cds.MS.gene61200.t1;Parent=MS.gene61200.t1
Gene Sequence

>MS.gene61200

ATGGGTATGAACTGCAACAGAGTAGAACACTTTGAAGAAACAACAATGAAAATTCAAACAGAAATTCCAATTCATCAAGTTCGTTTACCACCAGAGAGAACATCATTCAACAAACTCAAACACAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCATCTTTCACAAAGTTTCTTCTTACCCTTCAATTCTTGTTCCCCATTTTTCAATGGGGTTCTCAGTATACTCTCACCCTTCTTCGTTCTGATGTCATTTCTGGTCTCACCATTGCCAGCCTCGCCATTCCTCAGGTATAAAACACACTAACTTCTTACATGTCTCTCATACTTCATATTGAAGACGTGTCTGGTGCCTGACACTTGAGACATACGACTATATTCAATTATTTCATTTTGTGAAATAAAGACGTATCTAATGTCCGACAAAACACGTGGTTACACTCAATTATTTTAATTTATGAAATTACCATTGATGTTAGTGTCGTGTTTGGTGCCGGTGTTAGTCTTGCATAGTGTCGCACTTATTTTTTCATGTCATTATACACATATGTTTGTATTTCATCATAAAGATTGAAGACGTGTCTAGTATCTGACACCGAGAAATGCGCGACTATATTCAATTATCTCATTTTCTAAAATTAAAGCGTGTTCGGTGTCCGGTGTCTATCGGTGAGACATGTGATGACATTCAATAATTTCATTTTCTGAAATTATTACCGTCGTGTCTGTCAGGTGTTTGTGTTAGTGTTTCATAGTGTCTCAGTTTTTTGTTATTTTTTTTTATATATATCATCATGCATACTTATATTTATATAATATATTTATGTTTCACTTTTGCCTTTTTTTTTTGGACTGAATTTTGTCTCTTGATATATTGCAGGGAATTAGCTATGCAAAGCTTGCAAACTTGCCTCCTATTATTGGACTGTGTGGGTATTTAATTTATTTCTAGTTTCATGATTTCTGGCATTGAGTAATTGTTATTAATTATGATGGAACATTTGAATATGACACAGATTCAAGTTTTGTGCCACCATTGATATATGCTCTGCTTGGAAGTTCAAGACATGTTGGTGTTGGACCAGTTTCAATTGCATCTTTGGTTATGGGATCAATGTTGAGTGAAACTGTTTCTTTCACTCAAAATCCTACTCTTTATCTTCAATTGGCTTTCACTGCCACCTTTGTTGCTGGTTTATTCCAAGCATCTCTTGGTATACTAAGGTATTCAATTAAACAAAATCATTCATCTTCTGATTTTTATTTTTATTTTACTCTTGCATGTGAAATTAATTAGTTAAAAATTAGCATAGTAAGATTGGTAAAAAAGTCACATAAGTACGGTCTGACATATGGTAAAAGATTGCATGAACATTTGATAACTTATGACTCTCCGCATGTGTTTGTGATTTCACTACTAGACTCTTCTGAAAAAAGAAAAAAAAAATCAAAAACTTGTTACAAGTACTTTATTTAATAATAAGACAATTCTAGTCAACTTGAAATTTGAGAATTTATTTATGGTTATTTATTGAAGGACATTTTATTAGTTCCCTATGTTTTGTGAATGATGAAATAATCTTTTGAATTTGTGTATGCAGGTTAGGCTTTGTAATTGATTTCCTATCAAAAGCAACACTGGTCGGTTTCATGGCCGGTGCTGCTATCATTGTGTCACTACAGCAATTGAAAGGGTTACTTGGAATTGTGCACTTTACTAACAAGATGCAAATTATTCCTGTATTGGTCTCTGTTTACAAGCAAAAGGATGAGGTACAGAACACTACCATGTAGTTTAGCACTTTAAGAATGCTTGGAAATTGGAAACAAATTTTTGCATATTGTTTTTTAGTCATTTTCTAAAATTAAATTTATATTTTTTTTTGTATATTAAGTAATTTGAACTTTTATTAATAAAATAAATTATTTATTGTCTCGTAAATTCAATTCAAATGGTAAAAAGCTACATAGATATTTGATATGCCTGAACGCCAATTCGAATCCATAATATTCTTCATTTCTCATTGTTGTGTGTGGAAGTTTCACATGTATGTTCTTTAGAACTAAATAAAAAAAAATACTTACAAATGTATGACACAATGTAATTTGATGTACAAATTATTTATTTATTTTTGTAACTAATAGTAACAAACATTAAAATTGATTTCTAAATTAAGTAATTTCTATTTTTCTCTTACGATTCCCACCACAATCTTTTCATAGGAATATATAGATAGATTATCATTGCCCTTGCACCCCATGATTGCTAAGTGAAGGATGGCTATTTTTTTCATATATGCTTTCTTTCATGAAGAGAGTATAATGGGCCACTTTTAAATATTGTGATGCTAGTGCAAGTGTAAATACTTGTGAAGTTGACTAAAGTTCTTTTACAACTATTTTTGCAGTGGTCATGGCAAACTATTGTTATGGGATTTGGCTTTTTGGCATTCCTACTCACAACAAGACACATTGTAAATTTCTCTATCTTGCATTATTTAAAACATAAAACTATATCTTATATAGTATAATATATCAGTCTAATGTTATTTGACTTTGATTTGGCTATTCATTTATTTTTCAAGTTCTAATTATTCTTGAAAATTTGCAACAGAGTTTGAGGAAACCAAAACTATTCTGGGCTTCAGCAGCTGCTCCTTTAACATCAGTCATTCTTTCAACCATCTTAGTCTTCCTTCTCAGAAATAAGGCTCATCACATTTCAGTTGTAAGAATTTTACTTACTTCATCATTACTATTTTGAGTGTATGACAAGCAGTATCAATTTAATAATATAAAAAAATTGAAATATTGGTCAAATTAATCAAAAGTAGTAATAACTGATTGATTCTCTGTGTATTCTTCGGCAGATTGGGCACTTGGCAAAAGGCGTTAATCCGCCATCAGTGAACCTGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACAGGCATTGTCACAGGAATCCTATCTCTCACAGTATGCAGAACCAAAACTTGTTACACTTTTCTGTCACATACTACATGTTACATACATAAATATAGGACACAACTTAGGTGTTGTTCTATAGGTACTACTTGTTCTGTTCACCGGTTATAATTTATCACGCGGTTATAATTTTTCAATTAAGTTTAAATTTAAATGATTTGGTTTATCTTATTTGATACACAATGTATACAGTGTATTGTGATTAGAGAACAATAAAAACAGCACACAGAGATGCATCTAGATTTTGTACTTAAATATGCCACATGATGCTGTTTTACTTAACTGTGACTTACTCTATTCAACAAAATTTGCCTATGTTTCAGGAAGGAATTGCAGTAGGTAGAACATTTGCAGCACTTAAAAATTACCAAGTGGATGGTAACAAAGAAATGATGGCCATTGGTATTATGAACATAGCTGGCTCTTGTACTTCATGCTATGTCACAACAGGTAACAACTCTTCTTTTATTTATCCACATGACTTAGTTATCTAAGAAGCATCAATTTTGAGAAAGTCTACATTCTTGCAGGATCCTTTTCTCGGTCGGCTGTTAACTACAATGCTGGAGCACAGACTGCGGTTTCTAATATAATCATGGCTTCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCTCTCTTCTACTATACACCAAATGTAGTCTTGGCAACCATCATTATTGCTGCTGTGATTGGACTAATAGATTATCAAGCGGCATATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTTGGTGTTCTGTTCCTTTCTGTACCTTTAGGCCTCAGTATTGCGGTAAGCTGAAAATTTGTTTATCTTGCAAATCCAAATGTATTAGTTTACTGACTATGATGCTCCAACAGTGTAAAACATTTTATACAGTCATCCAATCAGGTTTTATTGTAGCATTTGATTGAATGATTATATAAAAAGGTTTACACTGTCAGTGTATAGTCCCTAAACTTAAAATATATTGCATGATAATGCTATGGCATGTGGATACATTATTAATATCAATTTACTTGGCCAAAATCTTCAGGTTGCTATATCAGTCTTCAAGATCCTACTTCATGTCTCCAGACCAAACACTTTGGTTTTAGGAAACATACCTGGAACACAGATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCTAATTCGACTTACCTTCGAGAGAGGTTAGAGAAGGAAATTTCTAGAATTCTTTAAGTTGTTAAGTTCAGTATATATGTCTTTGATTGAATCCATGATTCATATGATTAAGAGCTTCTCCTGCTGCAGGATACTAAGATGGGTTCGAGAAGAGGAAGAGCGTATAAAAGAATATAACGGAACTTCATTGCAGTGCATAATTTTAGACATGACAGGTACTAATTTCATTAGACTTACAACATTGGTTAGAGTTTAGCAATCATGCACTGTCTGTGTACCTTTTTTTTTGACACAGATGTTCAACCGTATCTCATGTAGTATTATTTGCTAAGATATGTGCATAAATATCTATTTTGTGATATGTGATTAATGTATGTGGACAACTTTCTTACACTATTATGCAATATTTTTCTTTTTCAGCTGTCACAGCAATAGACACAAGTGGGCTTGAAACTTTAGGTGAACTTAGAAAGATGCTAGAAAAGAGATCACTTCAGGTACAGACACTAATTGATATATTGATTTCAGAAGGCCTAAAAAATCTACCATTATTCACTTTCTAACTTCTACATTTTATAATTTGCTACTGCAGCTTGTGCTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTACATATGTCGAAAATTTTGGATACCTTTGGATTTAAAGGACTCTATCTCACAGTGGGAGAAGCTGTTGCTGACATTTCAAAATCTGAGAAAGCTCAACCTTGA
Protein sequence

>MS.gene61200.t1

MGMNCNRVEHFEETTMKIQTEIPIHQVRLPPERTSFNKLKHRLSEIFFPDDPLHRFKNQPSFTKFLLTLQFLFPIFQWGSQYTLTLLRSDVISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSRHVGVGPVSIASLVMGSMLSETVSFTQNPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLVSVYKQKDEWSWQTIVMGFGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTILVFLLRNKAHHISVIGHLAKGVNPPSVNLLYFNGPYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFLSVPLGLSIAVAISVFKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWVREEEERIKEYNGTSLQCIILDMTAVTAIDTSGLETLGELRKMLEKRSLQLVLVNPVGNVMEKLHMSKILDTFGFKGLYLTVGEAVADISKSEKAQP