Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30731.t1 | XP_013460839.1 | 98.9 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.00E+00 | 1254.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30731.t1 | Q9FEP7 | 75.9 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 7.7e-280 | 964.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30731.t1 | A0A072V0K2 | 98.9 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0e+00 | 1254.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33360 | MS.gene30731 | PPI |
| MS.gene29852 | MS.gene30731 | PPI |
| MS.gene033981 | MS.gene30731 | PPI |
| MS.gene062785 | MS.gene30731 | PPI |
| MS.gene30731 | MS.gene053674 | PPI |
| MS.gene053674 | MS.gene30731 | PPI |
| MS.gene010265 | MS.gene30731 | PPI |
| MS.gene57599 | MS.gene30731 | PPI |
| MS.gene010268 | MS.gene30731 | PPI |
| MS.gene035937 | MS.gene30731 | PPI |
| MS.gene29013 | MS.gene30731 | PPI |
| MS.gene61200 | MS.gene30731 | PPI |
| MS.gene053673 | MS.gene30731 | PPI |
| MS.gene89102 | MS.gene30731 | PPI |
| MS.gene36287 | MS.gene30731 | PPI |
| MS.gene35622 | MS.gene30731 | PPI |
| MS.gene33361 | MS.gene30731 | PPI |
| MS.gene33359 | MS.gene30731 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30731.t1 | MTR_3g073780 | 98.938 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1333 |
| MS.gene30731.t1 | MTR_3g073780 | 99.147 | 586 | 5 | 0 | 1 | 586 | 1 | 586 | 0.0 | 1186 |
| MS.gene30731.t1 | MTR_5g061880 | 84.018 | 657 | 102 | 2 | 4 | 659 | 1 | 655 | 0.0 | 1136 |
| MS.gene30731.t1 | MTR_3g073780 | 99.106 | 559 | 5 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1127 |
| MS.gene30731.t1 | MTR_2g008470 | 70.128 | 626 | 183 | 3 | 30 | 654 | 51 | 673 | 0.0 | 902 |
| MS.gene30731.t1 | MTR_2g008470 | 70.128 | 626 | 183 | 3 | 30 | 654 | 32 | 654 | 0.0 | 901 |
| MS.gene30731.t1 | MTR_1g071530 | 53.096 | 646 | 291 | 4 | 23 | 659 | 3 | 645 | 0.0 | 696 |
| MS.gene30731.t1 | MTR_7g095430 | 52.335 | 621 | 292 | 3 | 33 | 652 | 18 | 635 | 0.0 | 694 |
| MS.gene30731.t1 | MTR_2g102243 | 53.344 | 628 | 289 | 3 | 33 | 659 | 23 | 647 | 0.0 | 694 |
| MS.gene30731.t1 | MTR_4g084620 | 51.411 | 638 | 304 | 5 | 17 | 652 | 1 | 634 | 0.0 | 683 |
| MS.gene30731.t1 | MTR_3g087740 | 53.704 | 648 | 278 | 9 | 11 | 651 | 17 | 649 | 0.0 | 679 |
| MS.gene30731.t1 | MTR_5g061860 | 54.327 | 624 | 269 | 6 | 38 | 651 | 29 | 646 | 0.0 | 678 |
| MS.gene30731.t1 | MTR_4g011970 | 51.823 | 631 | 294 | 4 | 33 | 659 | 30 | 654 | 0.0 | 675 |
| MS.gene30731.t1 | MTR_4g084640 | 50.230 | 651 | 316 | 4 | 9 | 659 | 2 | 644 | 0.0 | 669 |
| MS.gene30731.t1 | MTR_3g073730 | 51.314 | 647 | 290 | 5 | 13 | 651 | 23 | 652 | 0.0 | 664 |
| MS.gene30731.t1 | MTR_7g095430 | 53.514 | 555 | 254 | 3 | 33 | 586 | 18 | 569 | 0.0 | 637 |
| MS.gene30731.t1 | MTR_2g102243 | 54.595 | 555 | 248 | 3 | 33 | 586 | 23 | 574 | 0.0 | 635 |
| MS.gene30731.t1 | MTR_5g061860 | 57.331 | 532 | 212 | 6 | 38 | 559 | 28 | 554 | 0.0 | 608 |
| MS.gene30731.t1 | MTR_6g086170 | 43.680 | 625 | 345 | 4 | 28 | 651 | 5 | 623 | 0.0 | 572 |
| MS.gene30731.t1 | MTR_3g087730 | 41.014 | 651 | 356 | 9 | 9 | 648 | 16 | 649 | 1.86e-173 | 510 |
| MS.gene30731.t1 | MTR_7g022870 | 39.446 | 578 | 336 | 7 | 77 | 651 | 70 | 636 | 1.65e-137 | 419 |
| MS.gene30731.t1 | MTR_7g022870 | 40.351 | 513 | 292 | 7 | 77 | 586 | 70 | 571 | 3.40e-122 | 375 |
| MS.gene30731.t1 | MTR_6g024420 | 48.182 | 110 | 38 | 3 | 260 | 369 | 76 | 166 | 2.41e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30731.t1 | AT1G22150 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| MS.gene30731.t1 | AT1G22150 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| MS.gene30731.t1 | AT1G22150 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| MS.gene30731.t1 | AT1G78000 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| MS.gene30731.t1 | AT1G78000 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| MS.gene30731.t1 | AT1G78000 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| MS.gene30731.t1 | AT4G08620 | 71.589 | 623 | 174 | 2 | 34 | 655 | 24 | 644 | 0.0 | 910 |
| MS.gene30731.t1 | AT1G78000 | 78.462 | 585 | 123 | 2 | 30 | 613 | 25 | 607 | 0.0 | 892 |
| MS.gene30731.t1 | AT1G22150 | 77.002 | 587 | 130 | 4 | 1 | 586 | 1 | 583 | 0.0 | 884 |
| MS.gene30731.t1 | AT1G78000 | 78.853 | 558 | 115 | 2 | 30 | 586 | 25 | 580 | 0.0 | 848 |
| MS.gene30731.t1 | AT1G78000 | 78.481 | 474 | 100 | 1 | 29 | 502 | 24 | 495 | 0.0 | 712 |
| MS.gene30731.t1 | AT3G51895 | 53.215 | 622 | 286 | 4 | 33 | 652 | 65 | 683 | 0.0 | 704 |
| MS.gene30731.t1 | AT3G51895 | 53.215 | 622 | 286 | 4 | 33 | 652 | 20 | 638 | 0.0 | 702 |
| MS.gene30731.t1 | AT3G15990 | 51.675 | 627 | 299 | 3 | 33 | 658 | 27 | 650 | 0.0 | 687 |
| MS.gene30731.t1 | AT1G78000 | 80.984 | 447 | 82 | 2 | 141 | 586 | 1 | 445 | 0.0 | 673 |
| MS.gene30731.t1 | AT5G10180 | 53.333 | 630 | 284 | 6 | 27 | 651 | 48 | 672 | 0.0 | 660 |
| MS.gene30731.t1 | AT1G23090 | 50.641 | 624 | 303 | 4 | 33 | 654 | 4 | 624 | 0.0 | 657 |
| MS.gene30731.t1 | AT4G02700 | 49.114 | 621 | 311 | 4 | 33 | 651 | 10 | 627 | 0.0 | 627 |
| MS.gene30731.t1 | AT1G77990 | 48.476 | 656 | 323 | 6 | 6 | 648 | 10 | 663 | 0.0 | 620 |
| MS.gene30731.t1 | AT5G19600 | 42.543 | 637 | 347 | 7 | 19 | 651 | 2 | 623 | 0.0 | 537 |
| MS.gene30731.t1 | AT1G23090 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 3.92e-174 | 506 |
| MS.gene30731.t1 | AT1G23090 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 3.92e-174 | 506 |
| MS.gene30731.t1 | AT1G23090 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 3.92e-174 | 506 |
| MS.gene30731.t1 | AT3G12520 | 38.581 | 578 | 341 | 7 | 77 | 651 | 47 | 613 | 1.25e-132 | 405 |
| MS.gene30731.t1 | AT3G12520 | 38.581 | 578 | 341 | 7 | 77 | 651 | 63 | 629 | 1.67e-132 | 405 |
| MS.gene30731.t1 | AT5G13550 | 37.688 | 597 | 358 | 7 | 58 | 651 | 57 | 642 | 1.87e-129 | 397 |
| MS.gene30731.t1 | AT3G12520 | 39.463 | 484 | 281 | 6 | 77 | 559 | 63 | 535 | 4.27e-112 | 348 |
Find 108 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTTTACACATCAAATT+TGG | 0.194351 | 3.1:+60418547 | MS.gene30731:CDS |
| TTAATGTCATACAATAAATT+TGG | 0.204828 | 3.1:-60416322 | None:intergenic |
| GCTTGCATGGGAGCATTCTT+TGG | 0.233187 | 3.1:+60417422 | MS.gene30731:CDS |
| TCAAATTTGGCTAACATAAT+TGG | 0.235564 | 3.1:+60418560 | MS.gene30731:CDS |
| TCATATTCCCTATACTTAAC+TGG | 0.244415 | 3.1:+60415220 | MS.gene30731:CDS |
| CTTGCATGGGAGCATTCTTT+GGG | 0.248132 | 3.1:+60417423 | MS.gene30731:CDS |
| CTTGTTTGAGCAGCTTGTTC+TGG | 0.272068 | 3.1:+60418499 | MS.gene30731:intron |
| TTCCCTAAAATAGCAGTTCT+TGG | 0.273754 | 3.1:-60417865 | None:intergenic |
| GGCAGTGGTTTCTCTCTTGT+TGG | 0.283018 | 3.1:+60415626 | MS.gene30731:CDS |
| TCCTTGAATAAGTTCTGTTT+TGG | 0.295462 | 3.1:-60415099 | None:intergenic |
| GCAGTGGTTTCTCTCTTGTT+GGG | 0.301862 | 3.1:+60415627 | MS.gene30731:CDS |
| TGGTTTGGAAAATAGGATAT+TGG | 0.313803 | 3.1:+60415397 | MS.gene30731:intron |
| TATTCTTCTGCATGCGTAAC+AGG | 0.316301 | 3.1:-60415675 | None:intergenic |
| ACCACTGATTTATGCTTTCA+TGG | 0.325405 | 3.1:+60415572 | MS.gene30731:CDS |
| CATCAGTCTTGTGGACTATC+AGG | 0.327508 | 3.1:+60417358 | MS.gene30731:CDS |
| TTGGCCTTGTCACTTGTAAT+AGG | 0.331619 | 3.1:-60417846 | None:intergenic |
| CTATCCCATGCTGCTATTGT+CGG | 0.334142 | 3.1:+60415920 | MS.gene30731:CDS |
| ATACTCTAAGCTTGCACATT+TGG | 0.342714 | 3.1:+60415420 | MS.gene30731:CDS |
| CATGGGTTCACATCTAGCTT+TGG | 0.355433 | 3.1:-60418632 | None:intergenic |
| GATATCAATGGGGCAATTGC+TGG | 0.356023 | 3.1:-60416459 | None:intergenic |
| GTACCTTTCTTTAACATAGT+TGG | 0.358549 | 3.1:-60417995 | None:intergenic |
| AGAAGAACAAGAAATTCTTC+TGG | 0.361674 | 3.1:+60416433 | MS.gene30731:CDS |
| TACTAGCTTCAGTGTATTGT+TGG | 0.365948 | 3.1:-60417918 | None:intergenic |
| TCCTTTCAGGTTCTTTCTCT+CGG | 0.370793 | 3.1:+60417189 | MS.gene30731:intron |
| ATGAAGGATTATCAATTAGA+TGG | 0.377902 | 3.1:+60416902 | MS.gene30731:CDS |
| TGGTCTTTGAAAGATCTTAG+AGG | 0.380869 | 3.1:-60415162 | None:intergenic |
| GCACATTTGGCACCACAGTA+TGG | 0.381293 | 3.1:+60415433 | MS.gene30731:CDS |
| CAGCTTGTTCTGGCAAATCC+TGG | 0.413117 | 3.1:+60418509 | MS.gene30731:intron |
| TTCTGCTGTCATCAGTCTTG+TGG | 0.413682 | 3.1:+60417349 | MS.gene30731:CDS |
| ACTGAAGCTAGTAAGGTTCC+AGG | 0.413698 | 3.1:+60417928 | MS.gene30731:CDS |
| TCCAAAACAGAACTTATTCA+AGG | 0.417587 | 3.1:+60415098 | MS.gene30731:CDS |
| TGATATTATCTCCGTGTTGA+AGG | 0.418696 | 3.1:+60416030 | MS.gene30731:CDS |
| AACTGGCAAACTATATTAAT+CGG | 0.422167 | 3.1:+60416270 | MS.gene30731:CDS |
| TTTAAAATTGGCGTCATGGC+AGG | 0.425028 | 3.1:+60416736 | MS.gene30731:CDS |
| GAGAGAGCATACTCCATGTT+TGG | 0.433528 | 3.1:-60416068 | None:intergenic |
| TAAATTTCATGAACAGATGA+AGG | 0.439342 | 3.1:-60416685 | None:intergenic |
| ACAATACAACTGATATCAAT+GGG | 0.439415 | 3.1:-60416470 | None:intergenic |
| CAACAGCTAAAGGGTTTCCT+TGG | 0.439994 | 3.1:+60415977 | MS.gene30731:CDS |
| GGGATTACACAAGCAACTCT+TGG | 0.440824 | 3.1:+60415732 | MS.gene30731:CDS |
| AATTGCCCTTCAACAGCTAA+AGG | 0.441884 | 3.1:+60415967 | MS.gene30731:CDS |
| GAAGAACAAGAAATTCTTCT+GGG | 0.444848 | 3.1:+60416434 | MS.gene30731:CDS |
| AAGAACATTTGCATCTATGA+AGG | 0.450445 | 3.1:+60416886 | MS.gene30731:CDS |
| GGAAACCCTTTAGCTGTTGA+AGG | 0.451418 | 3.1:-60415973 | None:intergenic |
| TTCTTTAACATAGTTGGAGT+TGG | 0.452253 | 3.1:-60417989 | None:intergenic |
| ACAATACACTGAAGCTAGTA+AGG | 0.453852 | 3.1:+60417921 | MS.gene30731:CDS |
| AATGATGATGGCGGCGAGAA+TGG | 0.456380 | 3.1:-60417327 | None:intergenic |
| ACTTCTTGTTATGTGGCAAC+TGG | 0.456644 | 3.1:+60416974 | MS.gene30731:CDS |
| TTTGGCTAACATAATTGGTC+AGG | 0.456815 | 3.1:+60418565 | MS.gene30731:CDS |
| ATTGCCCTTCAACAGCTAAA+GGG | 0.458365 | 3.1:+60415968 | MS.gene30731:CDS |
| TGCAAGTCTTTGCATACCTC+AGG | 0.461632 | 3.1:+60415299 | MS.gene30731:CDS |
| CAGTGGTTTCTCTCTTGTTG+GGG | 0.462873 | 3.1:+60415628 | MS.gene30731:CDS |
| AAGGTAAATCACATAGAGAA+AGG | 0.464306 | 3.1:+60416655 | MS.gene30731:intron |
| ATGGCGGCGAGAATGGCATT+TGG | 0.465915 | 3.1:-60417320 | None:intergenic |
| AGTTCTCGCGATATAGCAAT+AGG | 0.473447 | 3.1:+60415597 | MS.gene30731:CDS |
| CGACAATAGCAGCATGGGAT+AGG | 0.479296 | 3.1:-60415919 | None:intergenic |
| CAATATTAGAGACTGCAGTT+TGG | 0.479467 | 3.1:-60417238 | None:intergenic |
| GGATTACACAAGCAACTCTT+GGG | 0.490943 | 3.1:+60415733 | MS.gene30731:CDS |
| ATTAGATGGAAACAGAGAAA+TGG | 0.491879 | 3.1:+60416916 | MS.gene30731:CDS |
| CATATTCCCTATACTTAACT+GGG | 0.493178 | 3.1:+60415221 | MS.gene30731:CDS |
| TTGTCTGTATCTTTATCAGT+TGG | 0.493507 | 3.1:-60415003 | None:intergenic |
| TTATCAGTTGGAGAATCCAT+TGG | 0.494298 | 3.1:-60414991 | None:intergenic |
| GACAATACAACTGATATCAA+TGG | 0.494922 | 3.1:-60416471 | None:intergenic |
| TTGTCTGTCACTGCTGAACC+AGG | 0.503392 | 3.1:-60418527 | None:intergenic |
| AGCAATAGGACCGGTGGCAG+TGG | 0.517665 | 3.1:+60415611 | MS.gene30731:CDS |
| TTCGATGACTTCTTGTTATG+TGG | 0.520745 | 3.1:+60416967 | MS.gene30731:CDS |
| ATTGCAACTTTGTAAGCGTA+TGG | 0.525652 | 3.1:-60415072 | None:intergenic |
| AAATGTTCTTCCAATAGCTA+TGG | 0.529144 | 3.1:-60416873 | None:intergenic |
| CAGAATATTAAGATGGCTAA+CGG | 0.529634 | 3.1:+60418098 | MS.gene30731:intron |
| ACTCCAACTATGTTAAAGAA+AGG | 0.531555 | 3.1:+60417992 | MS.gene30731:CDS |
| GGCAGGCATGATTGCACTGA+CGG | 0.532067 | 3.1:+60416753 | MS.gene30731:CDS |
| AACAGAGAAATGGTAGCGTT+AGG | 0.534101 | 3.1:+60416926 | MS.gene30731:CDS |
| TATGTAACTCTTCAAAGGCA+TGG | 0.541754 | 3.1:-60418309 | None:intergenic |
| TTTAGGGGAGATATAATAGC+TGG | 0.546068 | 3.1:+60415267 | MS.gene30731:CDS |
| TTCAGGTTCTTTCTCTCGGT+CGG | 0.546094 | 3.1:+60417193 | MS.gene30731:intron |
| CCACTGATTTATGCTTTCAT+GGG | 0.547230 | 3.1:+60415573 | MS.gene30731:CDS |
| AGGTTCTTTCTCTCGGTCGG+CGG | 0.551736 | 3.1:+60417196 | MS.gene30731:intron |
| TCGGCGGTAAATTACATGGC+TGG | 0.554084 | 3.1:+60417212 | MS.gene30731:CDS |
| AGGTAAATCACATAGAGAAA+GGG | 0.560126 | 3.1:+60416656 | MS.gene30731:intron |
| GTCACTGTTGATGTCTCCAA+TGG | 0.566938 | 3.1:+60414975 | None:intergenic |
| AGCGGCGATTACCTTGGGAA+AGG | 0.569473 | 3.1:+60416712 | MS.gene30731:CDS |
| TTAGGAACAATGAATGTCGT+TGG | 0.571428 | 3.1:+60416944 | MS.gene30731:CDS |
| AAGAGAGAAACCACTGCCAC+CGG | 0.573743 | 3.1:-60415621 | None:intergenic |
| GAAACCCTTTAGCTGTTGAA+GGG | 0.577893 | 3.1:-60415972 | None:intergenic |
| ACTTCTATGTAACTCTTCAA+AGG | 0.581904 | 3.1:-60418314 | None:intergenic |
| CAATAAATTTGGCGACCAGA+AGG | 0.585111 | 3.1:-60416311 | None:intergenic |
| AAAACCGACAATAGCAGCAT+GGG | 0.585952 | 3.1:-60415924 | None:intergenic |
| GTATTCTCATCAGCCAAACA+TGG | 0.590091 | 3.1:+60416055 | MS.gene30731:CDS |
| ACTCTTACAATCATTACACC+TGG | 0.609301 | 3.1:-60417946 | None:intergenic |
| TCGGTCGGCGGTAAATTACA+TGG | 0.613139 | 3.1:+60417208 | MS.gene30731:CDS |
| ACGGATGAAGAAGCAGTGAA+AGG | 0.618073 | 3.1:+60418117 | MS.gene30731:CDS |
| GATGACAGCAGAAATGATGA+TGG | 0.627258 | 3.1:-60417339 | None:intergenic |
| TTTCTATAGACAGATGTCCC+AGG | 0.630261 | 3.1:-60417892 | None:intergenic |
| TCGCGATATAGCAATAGGAC+CGG | 0.631264 | 3.1:+60415602 | MS.gene30731:CDS |
| TAAAACCGACAATAGCAGCA+TGG | 0.633354 | 3.1:-60415925 | None:intergenic |
| ATGAAAGCATAAATCAGTGG+TGG | 0.637451 | 3.1:-60415570 | None:intergenic |
| TTGCATGGGAGCATTCTTTG+GGG | 0.638724 | 3.1:+60417424 | MS.gene30731:CDS |
| TATTCCCTATACTTAACTGG+GGG | 0.663981 | 3.1:+60415223 | MS.gene30731:CDS |
| CGATATAGCAATAGGACCGG+TGG | 0.667178 | 3.1:+60415605 | MS.gene30731:CDS |
| ATAACACGCGCAGATAAACA+AGG | 0.670320 | 3.1:+60416510 | MS.gene30731:CDS |
| CCCATGAAAGCATAAATCAG+TGG | 0.677707 | 3.1:-60415573 | None:intergenic |
| ATATTCCCTATACTTAACTG+GGG | 0.678687 | 3.1:+60415222 | MS.gene30731:CDS |
| TGAGAATACTGCCTTCAACA+CGG | 0.684095 | 3.1:-60416041 | None:intergenic |
| AGATCCTATTACAAGTGACA+AGG | 0.684935 | 3.1:+60417842 | MS.gene30731:CDS |
| CAACAGCTGCTGCAACAGTG+AGG | 0.697666 | 3.1:-60418598 | None:intergenic |
| GTCTTACATAGTCCATACTG+TGG | 0.710058 | 3.1:-60415445 | None:intergenic |
| GACAGCAGAAATGATGATGG+CGG | 0.713860 | 3.1:-60417336 | None:intergenic |
| CAATACAACTGATATCAATG+GGG | 0.724749 | 3.1:-60416469 | None:intergenic |
| GTTACTGACATCGATACGAG+TGG | 0.726960 | 3.1:+60418283 | MS.gene30731:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTATAATAAAGTACA+TGG | - | chr3.1:60417678-60417697 | None:intergenic | 10.0% |
| !! | TTACAATCTTAAAAAATTTA+GGG | + | chr3.1:60415251-60415270 | MS.gene30731:CDS | 10.0% |
| !!! | TTTTATTTTTACAAGTTTTT+TGG | + | chr3.1:60415487-60415506 | MS.gene30731:intron | 10.0% |
| !! | AAAACTTGTAAAAATAAAAC+TGG | - | chr3.1:60415486-60415505 | None:intergenic | 15.0% |
| !! | AAACTTGTAAAAATAAAACT+GGG | - | chr3.1:60415485-60415504 | None:intergenic | 15.0% |
| !! | AACTAAATAATAAAATGAGA+CGG | + | chr3.1:60416138-60416157 | MS.gene30731:intron | 15.0% |
| !! | GATATAAATTATGATACTAT+AGG | + | chr3.1:60418434-60418453 | MS.gene30731:intron | 15.0% |
| !! | GTTACAATCTTAAAAAATTT+AGG | + | chr3.1:60415250-60415269 | MS.gene30731:CDS | 15.0% |
| !! | TACAATCTTAAAAAATTTAG+GGG | + | chr3.1:60415252-60415271 | MS.gene30731:CDS | 15.0% |
| !! | TTAATGTCATACAATAAATT+TGG | - | chr3.1:60416325-60416344 | None:intergenic | 15.0% |
| !!! | ACTGAAATTTTGTTATATTT+TGG | + | chr3.1:60415518-60415537 | MS.gene30731:intron | 15.0% |
| !!! | CTATTATATCTGAAATATTT+AGG | + | chr3.1:60416363-60416382 | MS.gene30731:intron | 15.0% |
| !!! | TGGTAAGAAATTTTAATATT+AGG | - | chr3.1:60416190-60416209 | None:intergenic | 15.0% |
| !! | ATATAATAGTAAGATGAAGT+AGG | - | chr3.1:60416352-60416371 | None:intergenic | 20.0% |
| !! | ATATTTGATGTTCTTATACT+TGG | + | chr3.1:60415377-60415396 | MS.gene30731:intron | 20.0% |
| !! | TAGAAAAATGTTGAAGTAAA+TGG | - | chr3.1:60416822-60416841 | None:intergenic | 20.0% |
| !! | TATAATAGTAAGATGAAGTA+GGG | - | chr3.1:60416351-60416370 | None:intergenic | 20.0% |
| !! | TGTCAAAGTAATTCTTAATA+GGG | + | chr3.1:60417521-60417540 | MS.gene30731:intron | 20.0% |
| !! | TGTTATGAATACAAAAAAAG+TGG | - | chr3.1:60416496-60416515 | None:intergenic | 20.0% |
| !! | TTGTCAAAGTAATTCTTAAT+AGG | + | chr3.1:60417520-60417539 | MS.gene30731:intron | 20.0% |
| !! | TTGTTTCAATGTATAAACAA+AGG | - | chr3.1:60418034-60418053 | None:intergenic | 20.0% |
| !!! | AAGAAATTTTAATATTAGGC+AGG | - | chr3.1:60416186-60416205 | None:intergenic | 20.0% |
| !!! | ACATTTTAGTTTTAATTCCA+AGG | - | chr3.1:60415997-60416016 | None:intergenic | 20.0% |
| !!! | AGAAATTTTAATATTAGGCA+GGG | - | chr3.1:60416185-60416204 | None:intergenic | 20.0% |
| !!! | GTTCATGAAATTTATTTTAG+CGG | + | chr3.1:60416694-60416713 | MS.gene30731:CDS | 20.0% |
| !!! | TAATATTTAACATTTTGCAG+TGG | + | chr3.1:60416247-60416266 | MS.gene30731:intron | 20.0% |
| !!! | TTCATACATCTACAATTTTA+TGG | + | chr3.1:60417084-60417103 | MS.gene30731:intron | 20.0% |
| !!! | TTTTTTGCAGAATATTAAGA+TGG | + | chr3.1:60418091-60418110 | MS.gene30731:intron | 20.0% |
| ! | AACTGGCAAACTATATTAAT+CGG | + | chr3.1:60416270-60416289 | MS.gene30731:CDS | 25.0% |
| ! | ACAATACAACTGATATCAAT+GGG | - | chr3.1:60416473-60416492 | None:intergenic | 25.0% |
| ! | AGCATAGTATAACTAAGATT+TGG | - | chr3.1:60417495-60417514 | None:intergenic | 25.0% |
| ! | ATGAAGGATTATCAATTAGA+TGG | + | chr3.1:60416902-60416921 | MS.gene30731:CDS | 25.0% |
| ! | ATTCAGTTATAAGATCATCA+TGG | - | chr3.1:60415847-60415866 | None:intergenic | 25.0% |
| ! | CAAACTTTACACATCAAATT+TGG | + | chr3.1:60418547-60418566 | MS.gene30731:CDS | 25.0% |
| ! | CAACCTTAAATTTAAAGACT+AGG | + | chr3.1:60417572-60417591 | MS.gene30731:intron | 25.0% |
| ! | GTCAAAGTAATTCTTAATAG+GGG | + | chr3.1:60417522-60417541 | MS.gene30731:intron | 25.0% |
| ! | TAAATTTCATGAACAGATGA+AGG | - | chr3.1:60416688-60416707 | None:intergenic | 25.0% |
| ! | TATGAGGCTAAAACAAATTA+AGG | - | chr3.1:60418211-60418230 | None:intergenic | 25.0% |
| ! | TCAAAAATTGAATTCTTGTG+TGG | - | chr3.1:60418149-60418168 | None:intergenic | 25.0% |
| ! | TCAAATTTGGCTAACATAAT+TGG | + | chr3.1:60418560-60418579 | MS.gene30731:CDS | 25.0% |
| ! | TCTCAAGAAAAAGTTCAAAT+TGG | - | chr3.1:60418058-60418077 | None:intergenic | 25.0% |
| ! | TGATGATCTTATAACTGAAT+CGG | + | chr3.1:60415847-60415866 | MS.gene30731:intron | 25.0% |
| ! | TTCTGTCAAAAAATCAGATT+AGG | + | chr3.1:60415881-60415900 | MS.gene30731:intron | 25.0% |
| ! | TTTCAATGTATAAACAAAGG+AGG | - | chr3.1:60418031-60418050 | None:intergenic | 25.0% |
| !! | AGTCCTAGTCTTTAAATTTA+AGG | - | chr3.1:60417578-60417597 | None:intergenic | 25.0% |
| !! | ATGTTTCTTTTACAGTGTAT+TGG | - | chr3.1:60415128-60415147 | None:intergenic | 25.0% |
| !! | CTAGTCTTTAAATTTAAGGT+TGG | - | chr3.1:60417574-60417593 | None:intergenic | 25.0% |
| !! | TTTGGAGTGTATTTAAAAAG+AGG | - | chr3.1:60417305-60417324 | None:intergenic | 25.0% |
| !!! | ACATCAAAAAAGTTGATACT+TGG | + | chr3.1:60415189-60415208 | MS.gene30731:CDS | 25.0% |
| !!! | ATTTCATGTTGTGTTGATTA+GGG | + | chr3.1:60416408-60416427 | MS.gene30731:intron | 25.0% |
| !!! | CAGACAACAGTTTTTAATTT+CGG | + | chr3.1:60417036-60417055 | MS.gene30731:intron | 25.0% |
| !!! | TATTTCATGTTGTGTTGATT+AGG | + | chr3.1:60416407-60416426 | MS.gene30731:intron | 25.0% |
| !!! | TCAACTTTTTTGATGTACTT+TGG | - | chr3.1:60415185-60415204 | None:intergenic | 25.0% |
| !!! | TTATACTTGGTTTGGAAAAT+AGG | + | chr3.1:60415390-60415409 | MS.gene30731:intron | 25.0% |
| AAATGTTCTTCCAATAGCTA+TGG | - | chr3.1:60416876-60416895 | None:intergenic | 30.0% | |
| AAGAACATTTGCATCTATGA+AGG | + | chr3.1:60416886-60416905 | MS.gene30731:CDS | 30.0% | |
| AAGGTAAATCACATAGAGAA+AGG | + | chr3.1:60416655-60416674 | MS.gene30731:intron | 30.0% | |
| ACTCCAACTATGTTAAAGAA+AGG | + | chr3.1:60417992-60418011 | MS.gene30731:CDS | 30.0% | |
| ACTTCTATGTAACTCTTCAA+AGG | - | chr3.1:60418317-60418336 | None:intergenic | 30.0% | |
| AGAAGAACAAGAAATTCTTC+TGG | + | chr3.1:60416433-60416452 | MS.gene30731:CDS | 30.0% | |
| AGATACAGACAAAAACAAGA+TGG | + | chr3.1:60415014-60415033 | MS.gene30731:CDS | 30.0% | |
| AGGTAAATCACATAGAGAAA+GGG | + | chr3.1:60416656-60416675 | MS.gene30731:intron | 30.0% | |
| ATAATAAAGTACATGGACTC+CGG | - | chr3.1:60417671-60417690 | None:intergenic | 30.0% | |
| ATATTCCCTATACTTAACTG+GGG | + | chr3.1:60415222-60415241 | MS.gene30731:CDS | 30.0% | |
| ATTAGATGGAAACAGAGAAA+TGG | + | chr3.1:60416916-60416935 | MS.gene30731:CDS | 30.0% | |
| ATTGTGATTATATGTTGCAG+CGG | + | chr3.1:60418261-60418280 | MS.gene30731:intron | 30.0% | |
| CAATACAACTGATATCAATG+GGG | - | chr3.1:60416472-60416491 | None:intergenic | 30.0% | |
| CAATATTAATCATGTCTGCT+AGG | + | chr3.1:60418362-60418381 | MS.gene30731:intron | 30.0% | |
| CAGAATATTAAGATGGCTAA+CGG | + | chr3.1:60418098-60418117 | MS.gene30731:intron | 30.0% | |
| CATATGTATATGTAGAAGCT+TGG | + | chr3.1:60418393-60418412 | MS.gene30731:intron | 30.0% | |
| CATATTCCCTATACTTAACT+GGG | + | chr3.1:60415221-60415240 | MS.gene30731:CDS | 30.0% | |
| CATTGCTATGTAAACAAATG+TGG | + | chr3.1:60417700-60417719 | MS.gene30731:intron | 30.0% | |
| GAAGAACAAGAAATTCTTCT+GGG | + | chr3.1:60416434-60416453 | MS.gene30731:CDS | 30.0% | |
| GACAATACAACTGATATCAA+TGG | - | chr3.1:60416474-60416493 | None:intergenic | 30.0% | |
| GATTTACCTTCACATATCAA+TGG | - | chr3.1:60416645-60416664 | None:intergenic | 30.0% | |
| GGAAAAATACTCATAAAGAG+AGG | - | chr3.1:60416801-60416820 | None:intergenic | 30.0% | |
| GTACCTTTCTTTAACATAGT+TGG | - | chr3.1:60417998-60418017 | None:intergenic | 30.0% | |
| TCAAACAAGTAACACATTCT+TGG | - | chr3.1:60418488-60418507 | None:intergenic | 30.0% | |
| TCATAAGTCAAAATTACCTG+AGG | - | chr3.1:60415318-60415337 | None:intergenic | 30.0% | |
| TCATATTCCCTATACTTAAC+TGG | + | chr3.1:60415220-60415239 | MS.gene30731:CDS | 30.0% | |
| TCCAAAACAGAACTTATTCA+AGG | + | chr3.1:60415098-60415117 | MS.gene30731:CDS | 30.0% | |
| TCCTAAAAACCAAAATGCAA+TGG | - | chr3.1:60416851-60416870 | None:intergenic | 30.0% | |
| TGATGTTCTTATACTTGGTT+TGG | + | chr3.1:60415382-60415401 | MS.gene30731:intron | 30.0% | |
| TTCTTTAACATAGTTGGAGT+TGG | - | chr3.1:60417992-60418011 | None:intergenic | 30.0% | |
| TTGTCTGTATCTTTATCAGT+TGG | - | chr3.1:60415006-60415025 | None:intergenic | 30.0% | |
| TTTAAAGACTAGGACTAAGT+AGG | + | chr3.1:60417582-60417601 | MS.gene30731:intron | 30.0% | |
| ! | CAAATTACTCAAGAAGTATG+AGG | - | chr3.1:60418227-60418246 | None:intergenic | 30.0% |
| ! | CTAACTAAACCATTGCATTT+TGG | + | chr3.1:60416839-60416858 | MS.gene30731:intron | 30.0% |
| ! | TCCTTGAATAAGTTCTGTTT+TGG | - | chr3.1:60415102-60415121 | None:intergenic | 30.0% |
| ! | TGGTTTGGAAAATAGGATAT+TGG | + | chr3.1:60415397-60415416 | MS.gene30731:intron | 30.0% |
| ! | TTTTGACCATTGATATGTGA+AGG | + | chr3.1:60416636-60416655 | MS.gene30731:intron | 30.0% |
| !! | GGTCAAAAACTTTAGTTCTA+TGG | - | chr3.1:60416624-60416643 | None:intergenic | 30.0% |
| !! | TCTTGAAAAAAGAAGTGTTC+AGG | + | chr3.1:60418336-60418355 | MS.gene30731:CDS | 30.0% |
| !! | TTGAATAAGTTCTGTTTTGG+AGG | - | chr3.1:60415099-60415118 | None:intergenic | 30.0% |
| !!! | ACCATTGCATTTTGGTTTTT+AGG | + | chr3.1:60416847-60416866 | MS.gene30731:intron | 30.0% |
| !!! | CAATTTTAAAACCTTTCCCA+AGG | - | chr3.1:60416726-60416745 | None:intergenic | 30.0% |
| !!! | CTTGGGAAAGGTTTTAAAAT+TGG | + | chr3.1:60416724-60416743 | MS.gene30731:CDS | 30.0% |
| !!! | GATCGATTTTTTTTCCTTTC+AGG | + | chr3.1:60417176-60417195 | MS.gene30731:intron | 30.0% |
| !!! | TGAGACTTTATTTTTGTGAC+AGG | + | chr3.1:60417801-60417820 | MS.gene30731:intron | 30.0% |
| ACAAAGCTTGAGTCTGTAAA+AGG | - | chr3.1:60415549-60415568 | None:intergenic | 35.0% | |
| ACAATACACTGAAGCTAGTA+AGG | + | chr3.1:60417921-60417940 | MS.gene30731:CDS | 35.0% | |
| ACTCTTACAATCATTACACC+TGG | - | chr3.1:60417949-60417968 | None:intergenic | 35.0% | |
| AGATCCTATTACAAGTGACA+AGG | + | chr3.1:60417842-60417861 | MS.gene30731:CDS | 35.0% | |
| ATACTCTAAGCTTGCACATT+TGG | + | chr3.1:60415420-60415439 | MS.gene30731:CDS | 35.0% | |
| ATTGCAACTTTGTAAGCGTA+TGG | - | chr3.1:60415075-60415094 | None:intergenic | 35.0% | |
| CAAAGCTTGAGTCTGTAAAA+GGG | - | chr3.1:60415548-60415567 | None:intergenic | 35.0% | |
| CAATATTAGAGACTGCAGTT+TGG | - | chr3.1:60417241-60417260 | None:intergenic | 35.0% | |
| TATGTAACTCTTCAAAGGCA+TGG | - | chr3.1:60418312-60418331 | None:intergenic | 35.0% | |
| TATTCCCTATACTTAACTGG+GGG | + | chr3.1:60415223-60415242 | MS.gene30731:CDS | 35.0% | |
| TGATATTATCTCCGTGTTGA+AGG | + | chr3.1:60416030-60416049 | MS.gene30731:CDS | 35.0% | |
| TGTAATCCCAGCAAAAAAAG+TGG | - | chr3.1:60415721-60415740 | None:intergenic | 35.0% | |
| TTAGGAACAATGAATGTCGT+TGG | + | chr3.1:60416944-60416963 | MS.gene30731:CDS | 35.0% | |
| TTATCAGTTGGAGAATCCAT+TGG | - | chr3.1:60414994-60415013 | None:intergenic | 35.0% | |
| TTCCCTAAAATAGCAGTTCT+TGG | - | chr3.1:60417868-60417887 | None:intergenic | 35.0% | |
| TTTAGGGGAGATATAATAGC+TGG | + | chr3.1:60415267-60415286 | MS.gene30731:CDS | 35.0% | |
| TTTGGCTAACATAATTGGTC+AGG | + | chr3.1:60418565-60418584 | MS.gene30731:CDS | 35.0% | |
| ! | ATGAAAGCATAAATCAGTGG+TGG | - | chr3.1:60415573-60415592 | None:intergenic | 35.0% |
| ! | TACTAGCTTCAGTGTATTGT+TGG | - | chr3.1:60417921-60417940 | None:intergenic | 35.0% |
| ! | TGGTCTTTGAAAGATCTTAG+AGG | - | chr3.1:60415165-60415184 | None:intergenic | 35.0% |
| ! | TTAACATTTTGCAGTGGAAC+TGG | + | chr3.1:60416253-60416272 | MS.gene30731:intron | 35.0% |
| ! | TTCGATGACTTCTTGTTATG+TGG | + | chr3.1:60416967-60416986 | MS.gene30731:CDS | 35.0% |
| !! | ACCACTGATTTATGCTTTCA+TGG | + | chr3.1:60415572-60415591 | MS.gene30731:CDS | 35.0% |
| !! | ATCAGGCAGCAATTTTGATA+TGG | + | chr3.1:60417375-60417394 | MS.gene30731:CDS | 35.0% |
| !! | ATTCGATTTTGTTGCTTGCA+TGG | + | chr3.1:60417409-60417428 | MS.gene30731:CDS | 35.0% |
| !! | CCACTGATTTATGCTTTCAT+GGG | + | chr3.1:60415573-60415592 | MS.gene30731:CDS | 35.0% |
| !! | CTATTTTAGGGAAGATTCCT+GGG | + | chr3.1:60417875-60417894 | MS.gene30731:CDS | 35.0% |
| !! | TTCGATTTTGTTGCTTGCAT+GGG | + | chr3.1:60417410-60417429 | MS.gene30731:CDS | 35.0% |
| !! | TTTTAGGAAGCCATAGCTAT+TGG | + | chr3.1:60416863-60416882 | MS.gene30731:intron | 35.0% |
| !!! | AAGCTTTTTGAGTTTCCTTC+TGG | + | chr3.1:60416296-60416315 | MS.gene30731:CDS | 35.0% |
| !!! | AGGTTTTAAAATTGGCGTCA+TGG | + | chr3.1:60416732-60416751 | MS.gene30731:CDS | 35.0% |
| !!! | TTACAGCCACTTTTTTTGCT+GGG | + | chr3.1:60415712-60415731 | MS.gene30731:CDS | 35.0% |
| !!! | TTTACAGCCACTTTTTTTGC+TGG | + | chr3.1:60415711-60415730 | MS.gene30731:CDS | 35.0% |
| AAAACCGACAATAGCAGCAT+GGG | - | chr3.1:60415927-60415946 | None:intergenic | 40.0% | |
| AATTGCCCTTCAACAGCTAA+AGG | + | chr3.1:60415967-60415986 | MS.gene30731:CDS | 40.0% | |
| AGATTCTCGCATAGCATAAC+CGG | + | chr3.1:60417649-60417668 | MS.gene30731:intron | 40.0% | |
| AGTGTAACATTAGTAGCAGC+TGG | - | chr3.1:60415814-60415833 | None:intergenic | 40.0% | |
| AGTTCTCGCGATATAGCAAT+AGG | + | chr3.1:60415597-60415616 | MS.gene30731:CDS | 40.0% | |
| ATAACACGCGCAGATAAACA+AGG | + | chr3.1:60416510-60416529 | MS.gene30731:CDS | 40.0% | |
| ATTGCCCTTCAACAGCTAAA+GGG | + | chr3.1:60415968-60415987 | MS.gene30731:CDS | 40.0% | |
| CAATAAATTTGGCGACCAGA+AGG | - | chr3.1:60416314-60416333 | None:intergenic | 40.0% | |
| GAAACCCTTTAGCTGTTGAA+GGG | - | chr3.1:60415975-60415994 | None:intergenic | 40.0% | |
| GATGACAGCAGAAATGATGA+TGG | - | chr3.1:60417342-60417361 | None:intergenic | 40.0% | |
| GCACTTACAAACATACACAC+TGG | - | chr3.1:60416210-60416229 | None:intergenic | 40.0% | |
| GCTGGTAGTACATGTATATC+CGG | - | chr3.1:60415796-60415815 | None:intergenic | 40.0% | |
| GGATTACACAAGCAACTCTT+GGG | + | chr3.1:60415733-60415752 | MS.gene30731:CDS | 40.0% | |
| GTATTCTCATCAGCCAAACA+TGG | + | chr3.1:60416055-60416074 | MS.gene30731:CDS | 40.0% | |
| GTCTTACATAGTCCATACTG+TGG | - | chr3.1:60415448-60415467 | None:intergenic | 40.0% | |
| TAAAACCGACAATAGCAGCA+TGG | - | chr3.1:60415928-60415947 | None:intergenic | 40.0% | |
| TATTCTTCTGCATGCGTAAC+AGG | - | chr3.1:60415678-60415697 | None:intergenic | 40.0% | |
| TGAGAATACTGCCTTCAACA+CGG | - | chr3.1:60416044-60416063 | None:intergenic | 40.0% | |
| TTCTCCCCCAGTTAAGTATA+GGG | - | chr3.1:60415230-60415249 | None:intergenic | 40.0% | |
| TTTCTATAGACAGATGTCCC+AGG | - | chr3.1:60417895-60417914 | None:intergenic | 40.0% | |
| ! | AACAGAGAAATGGTAGCGTT+AGG | + | chr3.1:60416926-60416945 | MS.gene30731:CDS | 40.0% |
| ! | AAGCAACTCTTGGGATTTTC+AGG | + | chr3.1:60415742-60415761 | MS.gene30731:CDS | 40.0% |
| ! | ACTTCTTGTTATGTGGCAAC+TGG | + | chr3.1:60416974-60416993 | MS.gene30731:CDS | 40.0% |
| ! | CCCATGAAAGCATAAATCAG+TGG | - | chr3.1:60415576-60415595 | None:intergenic | 40.0% |
| ! | GTTTTCGTCTCTGTTGAGAT+AGG | + | chr3.1:60417449-60417468 | MS.gene30731:CDS | 40.0% |
| ! | TTTAAAATTGGCGTCATGGC+AGG | + | chr3.1:60416736-60416755 | MS.gene30731:CDS | 40.0% |
| !! | ATTTTAGCGGCGATTACCTT+GGG | + | chr3.1:60416707-60416726 | MS.gene30731:CDS | 40.0% |
| !! | GCTATTTTAGGGAAGATTCC+TGG | + | chr3.1:60417874-60417893 | MS.gene30731:CDS | 40.0% |
| !! | TCCTTTCAGGTTCTTTCTCT+CGG | + | chr3.1:60417189-60417208 | MS.gene30731:intron | 40.0% |
| !! | TTGGCCTTGTCACTTGTAAT+AGG | - | chr3.1:60417849-60417868 | None:intergenic | 40.0% |
| !!! | AGGCCAAGAACTGCTATTTT+AGG | + | chr3.1:60417862-60417881 | MS.gene30731:CDS | 40.0% |
| !!! | CTGCTATTGTCGGTTTTATG+GGG | + | chr3.1:60415930-60415949 | MS.gene30731:CDS | 40.0% |
| !!! | GCTGCTATTGTCGGTTTTAT+GGG | + | chr3.1:60415929-60415948 | MS.gene30731:CDS | 40.0% |
| !!! | GGCCAAGAACTGCTATTTTA+GGG | + | chr3.1:60417863-60417882 | MS.gene30731:CDS | 40.0% |
| !!! | TATTTTAGCGGCGATTACCT+TGG | + | chr3.1:60416706-60416725 | MS.gene30731:CDS | 40.0% |
| !!! | TGCTATTGTCGGTTTTATGG+GGG | + | chr3.1:60415931-60415950 | MS.gene30731:CDS | 40.0% |
| !!! | TGCTGCTATTGTCGGTTTTA+TGG | + | chr3.1:60415928-60415947 | MS.gene30731:CDS | 40.0% |
| ACCGAGAGAAAGAACCTGAA+AGG | - | chr3.1:60417193-60417212 | None:intergenic | 45.0% | |
| ACGGATGAAGAAGCAGTGAA+AGG | + | chr3.1:60418117-60418136 | MS.gene30731:CDS | 45.0% | |
| ACTGAAGCTAGTAAGGTTCC+AGG | + | chr3.1:60417928-60417947 | MS.gene30731:CDS | 45.0% | |
| CAACAGCTAAAGGGTTTCCT+TGG | + | chr3.1:60415977-60415996 | MS.gene30731:CDS | 45.0% | |
| CAGTGGTTTCTCTCTTGTTG+GGG | + | chr3.1:60415628-60415647 | MS.gene30731:CDS | 45.0% | |
| CTATCCCATGCTGCTATTGT+CGG | + | chr3.1:60415920-60415939 | MS.gene30731:CDS | 45.0% | |
| CTTCTCCCCCAGTTAAGTAT+AGG | - | chr3.1:60415231-60415250 | None:intergenic | 45.0% | |
| GATATCAATGGGGCAATTGC+TGG | - | chr3.1:60416462-60416481 | None:intergenic | 45.0% | |
| GCAGTGGTTTCTCTCTTGTT+GGG | + | chr3.1:60415627-60415646 | MS.gene30731:CDS | 45.0% | |
| GGAAACCCTTTAGCTGTTGA+AGG | - | chr3.1:60415976-60415995 | None:intergenic | 45.0% | |
| GGGATTACACAAGCAACTCT+TGG | + | chr3.1:60415732-60415751 | MS.gene30731:CDS | 45.0% | |
| GTTACTGACATCGATACGAG+TGG | + | chr3.1:60418283-60418302 | MS.gene30731:CDS | 45.0% | |
| TCGCGATATAGCAATAGGAC+CGG | + | chr3.1:60415602-60415621 | MS.gene30731:CDS | 45.0% | |
| TGCAAGTCTTTGCATACCTC+AGG | + | chr3.1:60415299-60415318 | MS.gene30731:CDS | 45.0% | |
| TTCTGCTGTCATCAGTCTTG+TGG | + | chr3.1:60417349-60417368 | MS.gene30731:CDS | 45.0% | |
| ! | CATCAGTCTTGTGGACTATC+AGG | + | chr3.1:60417358-60417377 | MS.gene30731:CDS | 45.0% |
| ! | CATGGGTTCACATCTAGCTT+TGG | - | chr3.1:60418635-60418654 | None:intergenic | 45.0% |
| ! | CGAAGCACTAATACAGACAC+CGG | + | chr3.1:60415774-60415793 | MS.gene30731:intron | 45.0% |
| ! | CTTGTTTGAGCAGCTTGTTC+TGG | + | chr3.1:60418499-60418518 | MS.gene30731:intron | 45.0% |
| ! | GAGAGAGCATACTCCATGTT+TGG | - | chr3.1:60416071-60416090 | None:intergenic | 45.0% |
| ! | TTCAGGTTCTTTCTCTCGGT+CGG | + | chr3.1:60417193-60417212 | MS.gene30731:intron | 45.0% |
| !! | CTTGCATGGGAGCATTCTTT+GGG | + | chr3.1:60417423-60417442 | MS.gene30731:CDS | 45.0% |
| !! | GACAGCAGAAATGATGATGG+CGG | - | chr3.1:60417339-60417358 | None:intergenic | 45.0% |
| !! | TTGCATGGGAGCATTCTTTG+GGG | + | chr3.1:60417424-60417443 | MS.gene30731:CDS | 45.0% |
| !!! | GCTATTGTCGGTTTTATGGG+GGG | + | chr3.1:60415932-60415951 | MS.gene30731:CDS | 45.0% |
| AAGAGAGAAACCACTGCCAC+CGG | - | chr3.1:60415624-60415643 | None:intergenic | 50.0% | |
| CGACAATAGCAGCATGGGAT+AGG | - | chr3.1:60415922-60415941 | None:intergenic | 50.0% | |
| CGATATAGCAATAGGACCGG+TGG | + | chr3.1:60415605-60415624 | MS.gene30731:CDS | 50.0% | |
| GCACATTTGGCACCACAGTA+TGG | + | chr3.1:60415433-60415452 | MS.gene30731:CDS | 50.0% | |
| GGCAGTGGTTTCTCTCTTGT+TGG | + | chr3.1:60415626-60415645 | MS.gene30731:CDS | 50.0% | |
| TCGGCGGTAAATTACATGGC+TGG | + | chr3.1:60417212-60417231 | MS.gene30731:CDS | 50.0% | |
| TCGGTCGGCGGTAAATTACA+TGG | + | chr3.1:60417208-60417227 | MS.gene30731:CDS | 50.0% | |
| TTGTCTGTCACTGCTGAACC+AGG | - | chr3.1:60418530-60418549 | None:intergenic | 50.0% | |
| ! | CAGCTTGTTCTGGCAAATCC+TGG | + | chr3.1:60418509-60418528 | MS.gene30731:intron | 50.0% |
| !! | AATGATGATGGCGGCGAGAA+TGG | - | chr3.1:60417330-60417349 | None:intergenic | 50.0% |
| !! | GCTTGCATGGGAGCATTCTT+TGG | + | chr3.1:60417422-60417441 | MS.gene30731:CDS | 50.0% |
| AGCGGCGATTACCTTGGGAA+AGG | + | chr3.1:60416712-60416731 | MS.gene30731:CDS | 55.0% | |
| AGGTTCTTTCTCTCGGTCGG+CGG | + | chr3.1:60417196-60417215 | MS.gene30731:intron | 55.0% | |
| ATGGCGGCGAGAATGGCATT+TGG | - | chr3.1:60417323-60417342 | None:intergenic | 55.0% | |
| CAACAGCTGCTGCAACAGTG+AGG | - | chr3.1:60418601-60418620 | None:intergenic | 55.0% | |
| GGCAGGCATGATTGCACTGA+CGG | + | chr3.1:60416753-60416772 | MS.gene30731:CDS | 55.0% | |
| AGCAATAGGACCGGTGGCAG+TGG | + | chr3.1:60415611-60415630 | MS.gene30731:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 60414985 | 60418655 | 60414985 | ID=MS.gene30731 |
| chr3.1 | mRNA | 60414985 | 60418655 | 60414985 | ID=MS.gene30731.t1;Parent=MS.gene30731 |
| chr3.1 | exon | 60414985 | 60415320 | 60414985 | ID=MS.gene30731.t1.exon1;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60414985 | 60415320 | 60414985 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60415412 | 60415460 | 60415412 | ID=MS.gene30731.t1.exon2;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60415412 | 60415460 | 60415412 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60415556 | 60415763 | 60415556 | ID=MS.gene30731.t1.exon3;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60415556 | 60415763 | 60415556 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60415898 | 60416078 | 60415898 | ID=MS.gene30731.t1.exon4;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60415898 | 60416078 | 60415898 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60416267 | 60416332 | 60416267 | ID=MS.gene30731.t1.exon5;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60416267 | 60416332 | 60416267 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60416429 | 60416542 | 60416429 | ID=MS.gene30731.t1.exon6;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60416429 | 60416542 | 60416429 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60416658 | 60416774 | 60416658 | ID=MS.gene30731.t1.exon7;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60416658 | 60416774 | 60416658 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60416869 | 60416995 | 60416869 | ID=MS.gene30731.t1.exon8;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60416869 | 60416995 | 60416869 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60417198 | 60417484 | 60417198 | ID=MS.gene30731.t1.exon9;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60417198 | 60417484 | 60417198 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60417823 | 60418013 | 60417823 | ID=MS.gene30731.t1.exon10;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60417823 | 60418013 | 60417823 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60418101 | 60418183 | 60418101 | ID=MS.gene30731.t1.exon11;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60418101 | 60418183 | 60418101 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60418281 | 60418357 | 60418281 | ID=MS.gene30731.t1.exon12;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60418281 | 60418357 | 60418281 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| chr3.1 | exon | 60418512 | 60418655 | 60418512 | ID=MS.gene30731.t1.exon13;Parent=MS.gene30731.t1 |
| chr3.1 | CDS | 60418512 | 60418655 | 60418512 | ID=cds.MS.gene30731.t1;Parent=MS.gene30731.t1 |
| Gene Sequence |
| Protein sequence |
