Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016180.t1 | XP_003588965.1 | 99.5 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 9.20E-97 | 362.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016180.t1 | Q84MC2 | 81.1 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 2.1e-81 | 303.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016180.t1 | G7I9V5 | 99.5 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 6.6e-97 | 362.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31266 | MS.gene016180 | PPI |
| MS.gene029824 | MS.gene016180 | PPI |
| MS.gene034799 | MS.gene016180 | PPI |
| MS.gene050128 | MS.gene016180 | PPI |
| MS.gene007426 | MS.gene016180 | PPI |
| MS.gene028695 | MS.gene016180 | PPI |
| MS.gene41079 | MS.gene016180 | PPI |
| MS.gene007521 | MS.gene016180 | PPI |
| MS.gene08753 | MS.gene016180 | PPI |
| MS.gene08691 | MS.gene016180 | PPI |
| MS.gene24610 | MS.gene016180 | PPI |
| MS.gene016180 | MS.gene055648 | PPI |
| MS.gene22428 | MS.gene016180 | PPI |
| MS.gene20068 | MS.gene016180 | PPI |
| MS.gene007681 | MS.gene016180 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016180.t1 | MTR_1g015830 | 99.457 | 184 | 1 | 0 | 1 | 184 | 1 | 184 | 1.23e-133 | 372 |
| MS.gene016180.t1 | MTR_1g057020 | 69.022 | 184 | 57 | 0 | 1 | 184 | 1 | 184 | 1.30e-96 | 279 |
| MS.gene016180.t1 | MTR_2g094790 | 70.787 | 178 | 52 | 0 | 7 | 184 | 11 | 188 | 2.72e-95 | 275 |
| MS.gene016180.t1 | MTR_4g058740 | 71.186 | 177 | 51 | 0 | 8 | 184 | 12 | 188 | 5.90e-94 | 272 |
| MS.gene016180.t1 | MTR_1g064260 | 69.663 | 178 | 54 | 0 | 7 | 184 | 11 | 188 | 9.55e-94 | 272 |
| MS.gene016180.t1 | MTR_7g101290 | 69.101 | 178 | 55 | 0 | 7 | 184 | 12 | 189 | 1.45e-93 | 271 |
| MS.gene016180.t1 | MTR_0041s0100 | 69.101 | 178 | 55 | 0 | 7 | 184 | 12 | 189 | 1.45e-93 | 271 |
| MS.gene016180.t1 | MTR_1g015830 | 100.000 | 132 | 0 | 0 | 53 | 184 | 1 | 132 | 3.76e-93 | 268 |
| MS.gene016180.t1 | MTR_3g113710 | 70.950 | 179 | 52 | 0 | 7 | 185 | 13 | 191 | 4.39e-93 | 271 |
| MS.gene016180.t1 | MTR_3g113710 | 70.787 | 178 | 52 | 0 | 7 | 184 | 13 | 190 | 7.33e-93 | 270 |
| MS.gene016180.t1 | MTR_1g064260 | 68.939 | 132 | 41 | 0 | 53 | 184 | 1 | 132 | 2.42e-66 | 201 |
| MS.gene016180.t1 | MTR_3g113710 | 73.913 | 115 | 30 | 0 | 70 | 184 | 10 | 124 | 1.26e-59 | 183 |
| MS.gene016180.t1 | MTR_1g024145 | 67.647 | 102 | 33 | 0 | 25 | 126 | 151 | 252 | 1.03e-43 | 146 |
| MS.gene016180.t1 | MTR_1g024850 | 63.380 | 71 | 26 | 0 | 5 | 75 | 13 | 83 | 6.57e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016180.t1 | AT5G11950 | 81.081 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 8.83e-109 | 310 |
| MS.gene016180.t1 | AT5G11950 | 81.081 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 8.83e-109 | 310 |
| MS.gene016180.t1 | AT5G11950 | 81.081 | 185 | 34 | 1 | 1 | 184 | 1 | 185 | 8.83e-109 | 310 |
| MS.gene016180.t1 | AT2G28305 | 73.184 | 179 | 48 | 0 | 7 | 185 | 6 | 184 | 2.78e-98 | 282 |
| MS.gene016180.t1 | AT2G28305 | 73.034 | 178 | 48 | 0 | 7 | 184 | 6 | 183 | 3.11e-97 | 280 |
| MS.gene016180.t1 | AT5G06300 | 70.109 | 184 | 55 | 0 | 1 | 184 | 1 | 184 | 4.53e-97 | 280 |
| MS.gene016180.t1 | AT2G37210 | 69.663 | 178 | 54 | 0 | 7 | 184 | 12 | 189 | 5.91e-95 | 275 |
| MS.gene016180.t1 | AT3G53450 | 69.101 | 178 | 55 | 0 | 7 | 184 | 12 | 189 | 1.35e-92 | 269 |
| MS.gene016180.t1 | AT2G35990 | 65.761 | 184 | 63 | 0 | 1 | 184 | 1 | 184 | 1.71e-91 | 266 |
| MS.gene016180.t1 | AT5G03270 | 67.403 | 181 | 59 | 0 | 5 | 185 | 15 | 195 | 2.88e-91 | 265 |
| MS.gene016180.t1 | AT5G03270 | 67.222 | 180 | 59 | 0 | 5 | 184 | 15 | 194 | 1.80e-90 | 263 |
| MS.gene016180.t1 | AT2G37210 | 60.891 | 202 | 55 | 1 | 7 | 184 | 12 | 213 | 6.61e-89 | 260 |
| MS.gene016180.t1 | AT4G35190 | 66.486 | 185 | 62 | 0 | 1 | 185 | 1 | 185 | 1.82e-88 | 258 |
| MS.gene016180.t1 | AT4G35190 | 66.304 | 184 | 62 | 0 | 1 | 184 | 1 | 184 | 1.36e-87 | 257 |
| MS.gene016180.t1 | AT5G11950 | 84.848 | 132 | 20 | 0 | 53 | 184 | 1 | 132 | 1.53e-78 | 231 |
| MS.gene016180.t1 | AT2G28305 | 73.134 | 134 | 36 | 0 | 7 | 140 | 6 | 139 | 1.30e-71 | 214 |
| MS.gene016180.t1 | AT2G35990 | 64.394 | 132 | 47 | 0 | 53 | 184 | 1 | 132 | 6.55e-61 | 187 |
| MS.gene016180.t1 | AT2G35990 | 64.394 | 132 | 47 | 0 | 53 | 184 | 1 | 132 | 6.55e-61 | 187 |
| MS.gene016180.t1 | AT5G26140 | 68.750 | 128 | 18 | 1 | 80 | 185 | 6 | 133 | 9.12e-50 | 159 |
| MS.gene016180.t1 | AT5G26140 | 65.789 | 114 | 17 | 1 | 94 | 185 | 1 | 114 | 2.37e-40 | 134 |
| MS.gene016180.t1 | AT5G26140 | 74.684 | 79 | 20 | 0 | 107 | 185 | 21 | 99 | 8.81e-34 | 117 |
Find 43 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATAGATTTGGTTTA+TGG | 0.161614 | 1.4:+6512504 | MS.gene016180:CDS |
| CATCTTCAACATAAGTTCTT+TGG | 0.223030 | 1.4:-6514014 | None:intergenic |
| TGGAACTATGGAAGAGCTTC+TGG | 0.266363 | 1.4:+6513745 | MS.gene016180:CDS |
| TCCTCATAATCAGGAGGATA+TGG | 0.292672 | 1.4:+6513725 | MS.gene016180:intron |
| AATGGTGGTTGTCATGTTCT+AGG | 0.326103 | 1.4:+6512573 | MS.gene016180:CDS |
| TCATGCGGCATGAGAGCTTT+TGG | 0.330366 | 1.4:-6512970 | None:intergenic |
| TGGTGGAAGTGTTGGATTGA+TGG | 0.341974 | 1.4:+6512527 | MS.gene016180:CDS |
| GGTTAAGAGGAACATAGATT+TGG | 0.375088 | 1.4:+6512497 | MS.gene016180:intron |
| GGTGGAAGTGTTGGATTGAT+GGG | 0.382799 | 1.4:+6512528 | MS.gene016180:CDS |
| ACTGAAAACATGGCGGTTGC+CGG | 0.398415 | 1.4:-6512043 | None:intergenic |
| GGTTTGTGTTTCAGGTTAAG+AGG | 0.417871 | 1.4:+6512484 | MS.gene016180:intron |
| ATCAGGAGGATATGGAACTA+TGG | 0.439372 | 1.4:+6513733 | MS.gene016180:intron |
| ATAGATTTGGTTTATGGTGG+TGG | 0.456028 | 1.4:+6512510 | MS.gene016180:CDS |
| AAGGAAGCAGAAAGTTCAAA+AGG | 0.460142 | 1.4:+6511995 | MS.gene016180:CDS |
| AACATAGATTTGGTTTATGG+TGG | 0.467733 | 1.4:+6512507 | MS.gene016180:CDS |
| GTTTATGGTGGTGGAAGTGT+TGG | 0.468866 | 1.4:+6512519 | MS.gene016180:CDS |
| AGCTTCTGGAGATGATAACT+TGG | 0.479259 | 1.4:+6513759 | MS.gene016180:CDS |
| GTCTTCTGCGGCAGCAACTC+CGG | 0.499932 | 1.4:+6512024 | MS.gene016180:CDS |
| ATGATAACTTGGGCTCAACT+TGG | 0.508240 | 1.4:+6513770 | MS.gene016180:CDS |
| GACAACTATACTCCGAGCAC+TGG | 0.509009 | 1.4:-6513978 | None:intergenic |
| TTTGACAATGGTGTTGAAGA+AGG | 0.509776 | 1.4:+6513944 | MS.gene016180:CDS |
| GTGAAGCAGTAGGTGAAGTA+AGG | 0.514214 | 1.4:+6513441 | MS.gene016180:CDS |
| ATGGTGGTTGTCATGTTCTA+GGG | 0.515119 | 1.4:+6512574 | MS.gene016180:CDS |
| AAGTTCATCTGCTAATTGAA+TGG | 0.518634 | 1.4:-6512073 | None:intergenic |
| GTTGGCCTACTGAATGTTGA+TGG | 0.518897 | 1.4:+6513896 | MS.gene016180:CDS |
| CAAAGAACTTATGTTGAAGA+TGG | 0.528044 | 1.4:+6514015 | MS.gene016180:CDS |
| TTGCTTGCATTGTTTGACAA+TGG | 0.530752 | 1.4:+6513932 | MS.gene016180:CDS |
| AGGAAGCAGAAAGTTCAAAA+GGG | 0.552817 | 1.4:+6511996 | MS.gene016180:CDS |
| AGAACTTATGTTGAAGATGG+AGG | 0.558261 | 1.4:+6514018 | MS.gene016180:CDS |
| CAGATATCTGGTGAAGCAGT+AGG | 0.570380 | 1.4:+6513431 | MS.gene016180:intron |
| TGCAATGGCTCAAGAAGCTG+AGG | 0.570924 | 1.4:+6513493 | MS.gene016180:CDS |
| GAGGCATTTATTGCACTCCC+TGG | 0.581953 | 1.4:+6513512 | MS.gene016180:CDS |
| ACAACTATACTCCGAGCACT+GGG | 0.596880 | 1.4:-6513977 | None:intergenic |
| TGGCGGCGTCACTGAAAACA+TGG | 0.602579 | 1.4:-6512053 | None:intergenic |
| GCATGAGAGAAAAGCTGCAA+TGG | 0.603274 | 1.4:+6513478 | MS.gene016180:CDS |
| AAAAGCTCTCATGCCGCATG+AGG | 0.606750 | 1.4:+6512972 | MS.gene016180:CDS |
| AGTAACCATCAACATTCAGT+AGG | 0.622543 | 1.4:-6513901 | None:intergenic |
| GCTTCTGGAGATGATAACTT+GGG | 0.623818 | 1.4:+6513760 | MS.gene016180:CDS |
| GATTCATTAAGCCCAGTGCT+CGG | 0.627959 | 1.4:+6513966 | MS.gene016180:CDS |
| AGTAGCACAAATACCTCATG+CGG | 0.657014 | 1.4:-6512985 | None:intergenic |
| TTCATCTGCTAATTGAATGG+CGG | 0.661275 | 1.4:-6512070 | None:intergenic |
| AAAAGGGTATGTGTCTTCTG+CGG | 0.690009 | 1.4:+6512012 | MS.gene016180:CDS |
| CGGCGTCACTGAAAACATGG+CGG | 0.784838 | 1.4:-6512050 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTCAAAAAATGTATAA+TGG | + | chr1.4:6512555-6512574 | MS.gene016180:CDS | 15.0% |
| !!! | ATTGTATTTTTCTTAATCTT+TGG | + | chr1.4:6512137-6512156 | MS.gene016180:intron | 15.0% |
| !!! | TTTTATATAAAAGTGTATCT+GGG | + | chr1.4:6512207-6512226 | MS.gene016180:intron | 15.0% |
| !!! | TTTTTATATAAAAGTGTATC+TGG | + | chr1.4:6512206-6512225 | MS.gene016180:intron | 15.0% |
| !!! | TTTTTATGTGTTTTGTTTTA+TGG | + | chr1.4:6512463-6512482 | MS.gene016180:intron | 15.0% |
| !! | ATAAGTGTTTATATGCTATA+AGG | - | chr1.4:6512684-6512703 | None:intergenic | 20.0% |
| !!! | AGAGAATATTTGCTTTTTTT+GGG | + | chr1.4:6512244-6512263 | MS.gene016180:intron | 20.0% |
| !!! | CTTGTAATTTCTTATTTGTA+TGG | - | chr1.4:6513197-6513216 | None:intergenic | 20.0% |
| ! | AAACATTAACATTTCACACA+TGG | - | chr1.4:6512378-6512397 | None:intergenic | 25.0% |
| ! | AATAACACAGATCTTACAAA+GGG | - | chr1.4:6512899-6512918 | None:intergenic | 25.0% |
| ! | ACTTGGAATTCATAAAAAAC+CGG | + | chr1.4:6513787-6513806 | MS.gene016180:CDS | 25.0% |
| ! | TCTCAAAAAATGTATAATGG+TGG | + | chr1.4:6512558-6512577 | MS.gene016180:CDS | 25.0% |
| ! | TTATGACATTTGACAATCAA+AGG | + | chr1.4:6513139-6513158 | MS.gene016180:intron | 25.0% |
| !! | TTTGATAATAGTTTATCGTC+TGG | + | chr1.4:6513106-6513125 | MS.gene016180:intron | 25.0% |
| !!! | CAGAGAATATTTGCTTTTTT+TGG | + | chr1.4:6512243-6512262 | MS.gene016180:intron | 25.0% |
| !!! | TCTTTTATTTTTCGTGCATT+GGG | + | chr1.4:6513644-6513663 | MS.gene016180:intron | 25.0% |
| !!! | TTCTTTTATTTTTCGTGCAT+TGG | + | chr1.4:6513643-6513662 | MS.gene016180:intron | 25.0% |
| AAATTACAAGAATGTTAGCG+AGG | + | chr1.4:6513207-6513226 | MS.gene016180:intron | 30.0% | |
| AAGTAACATCATAACGTTAC+CGG | - | chr1.4:6513809-6513828 | None:intergenic | 30.0% | |
| AAGTTCATCTGCTAATTGAA+TGG | - | chr1.4:6512076-6512095 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCGAAC+AGG | - | chr1.4:6512656-6512675 | None:intergenic | 30.0% | |
| AATGTAGAGTAGTACATATC+AGG | - | chr1.4:6512938-6512957 | None:intergenic | 30.0% | |
| AATTACAAGAATGTTAGCGA+GGG | + | chr1.4:6513208-6513227 | MS.gene016180:intron | 30.0% | |
| ACTTTGTTGGATAAAATGCT+TGG | + | chr1.4:6513825-6513844 | MS.gene016180:intron | 30.0% | |
| ATAAGTTGTTTATCCGAACA+GGG | - | chr1.4:6512655-6512674 | None:intergenic | 30.0% | |
| ATGTACTACTCTACATTTAC+AGG | + | chr1.4:6512941-6512960 | MS.gene016180:intron | 30.0% | |
| CAAAGAACTTATGTTGAAGA+TGG | + | chr1.4:6514015-6514034 | MS.gene016180:CDS | 30.0% | |
| CAATAACACAGATCTTACAA+AGG | - | chr1.4:6512900-6512919 | None:intergenic | 30.0% | |
| CATCTTCAACATAAGTTCTT+TGG | - | chr1.4:6514017-6514036 | None:intergenic | 30.0% | |
| CGAACTAACTACTATCATAA+AGG | - | chr1.4:6513337-6513356 | None:intergenic | 30.0% | |
| GGGTCAACATATGATTATAA+CGG | - | chr1.4:6513857-6513876 | None:intergenic | 30.0% | |
| TAACACTATAACAGTTACAC+AGG | - | chr1.4:6513015-6513034 | None:intergenic | 30.0% | |
| TCATCTTAGTATGCTGTAAT+TGG | + | chr1.4:6513398-6513417 | MS.gene016180:intron | 30.0% | |
| TGTACTACTCTACATTTACA+GGG | + | chr1.4:6512942-6512961 | MS.gene016180:intron | 30.0% | |
| TTTGATCTCTAGCAATGAAT+TGG | + | chr1.4:6513077-6513096 | MS.gene016180:intron | 30.0% | |
| ! | AACATAGATTTGGTTTATGG+TGG | + | chr1.4:6512507-6512526 | MS.gene016180:CDS | 30.0% |
| ! | AACTCTTTGAAGAGTTATTC+AGG | - | chr1.4:6513543-6513562 | None:intergenic | 30.0% |
| ! | AGGAACATAGATTTGGTTTA+TGG | + | chr1.4:6512504-6512523 | MS.gene016180:CDS | 30.0% |
| ! | ATATAAAAGTGTATCTGGGT+AGG | + | chr1.4:6512211-6512230 | MS.gene016180:intron | 30.0% |
| ! | CTTCTGATAATGACCTATTT+GGG | + | chr1.4:6513295-6513314 | MS.gene016180:intron | 30.0% |
| ! | GTGTACAGAAACATTGATTA+AGG | + | chr1.4:6512425-6512444 | MS.gene016180:intron | 30.0% |
| ! | GTTGTTGATTGATATCACTT+TGG | + | chr1.4:6512629-6512648 | MS.gene016180:intron | 30.0% |
| ! | TCTTCTGATAATGACCTATT+TGG | + | chr1.4:6513294-6513313 | MS.gene016180:intron | 30.0% |
| !! | ACGTTATGATGTTACTTTGT+TGG | + | chr1.4:6513812-6513831 | MS.gene016180:intron | 30.0% |
| !! | TGTTTTATGGTTTGTGTTTC+AGG | + | chr1.4:6512476-6512495 | MS.gene016180:intron | 30.0% |
| !!! | CTATTGATTTTCGTTCTACA+CGG | + | chr1.4:6513048-6513067 | MS.gene016180:intron | 30.0% |
| !!! | GGTTTATTTTGACAGATATC+TGG | + | chr1.4:6513419-6513438 | MS.gene016180:intron | 30.0% |
| AAGGAAGCAGAAAGTTCAAA+AGG | + | chr1.4:6511995-6512014 | MS.gene016180:CDS | 35.0% | |
| AGAACTTATGTTGAAGATGG+AGG | + | chr1.4:6514018-6514037 | MS.gene016180:CDS | 35.0% | |
| AGAGTTATTCAGGTAATACC+AGG | - | chr1.4:6513533-6513552 | None:intergenic | 35.0% | |
| AGGAAGCAGAAAGTTCAAAA+GGG | + | chr1.4:6511996-6512015 | MS.gene016180:CDS | 35.0% | |
| AGTAACCATCAACATTCAGT+AGG | - | chr1.4:6513904-6513923 | None:intergenic | 35.0% | |
| ATTCTATCCTCATAATCAGG+AGG | + | chr1.4:6513719-6513738 | MS.gene016180:intron | 35.0% | |
| GAGTTATTCAGGTAATACCA+GGG | - | chr1.4:6513532-6513551 | None:intergenic | 35.0% | |
| GATTATGAGGATAGAATGGA+GGG | - | chr1.4:6513716-6513735 | None:intergenic | 35.0% | |
| GGTTAAGAGGAACATAGATT+TGG | + | chr1.4:6512497-6512516 | MS.gene016180:intron | 35.0% | |
| GTATGTTAGGGTAATGTCAA+TGG | + | chr1.4:6513236-6513255 | MS.gene016180:intron | 35.0% | |
| TACAAAGGGTCTGTTTGAAT+AGG | - | chr1.4:6512885-6512904 | None:intergenic | 35.0% | |
| TCCATTCTATCCTCATAATC+AGG | + | chr1.4:6513716-6513735 | MS.gene016180:intron | 35.0% | |
| TCCTGATTATGAGGATAGAA+TGG | - | chr1.4:6513720-6513739 | None:intergenic | 35.0% | |
| TGATAGTAGTTAGTTCGTCA+TGG | + | chr1.4:6513340-6513359 | MS.gene016180:intron | 35.0% | |
| TGATTATGAGGATAGAATGG+AGG | - | chr1.4:6513717-6513736 | None:intergenic | 35.0% | |
| TTCATCTGCTAATTGAATGG+CGG | - | chr1.4:6512073-6512092 | None:intergenic | 35.0% | |
| TTGCTTGCATTGTTTGACAA+TGG | + | chr1.4:6513932-6513951 | MS.gene016180:CDS | 35.0% | |
| ! | AATGGAGGGTATGAGAAAAA+AGG | - | chr1.4:6513702-6513721 | None:intergenic | 35.0% |
| ! | ATAGATTTGGTTTATGGTGG+TGG | + | chr1.4:6512510-6512529 | MS.gene016180:CDS | 35.0% |
| ! | GAGCAAATTTTCTCCCAAAT+AGG | - | chr1.4:6513311-6513330 | None:intergenic | 35.0% |
| ! | TTTGACAATGGTGTTGAAGA+AGG | + | chr1.4:6513944-6513963 | MS.gene016180:CDS | 35.0% |
| AAATATCATCCTGCACAGGT+TGG | + | chr1.4:6513878-6513897 | MS.gene016180:intron | 40.0% | |
| AATGGTGGTTGTCATGTTCT+AGG | + | chr1.4:6512573-6512592 | MS.gene016180:CDS | 40.0% | |
| AGCGAGGGTTTATGTATGTT+AGG | + | chr1.4:6513223-6513242 | MS.gene016180:intron | 40.0% | |
| AGTAGCACAAATACCTCATG+CGG | - | chr1.4:6512988-6513007 | None:intergenic | 40.0% | |
| ATCAGGAGGATATGGAACTA+TGG | + | chr1.4:6513733-6513752 | MS.gene016180:intron | 40.0% | |
| ATGATAACTTGGGCTCAACT+TGG | + | chr1.4:6513770-6513789 | MS.gene016180:CDS | 40.0% | |
| ATGGTGGTTGTCATGTTCTA+GGG | + | chr1.4:6512574-6512593 | MS.gene016180:CDS | 40.0% | |
| GCGAGGGTTTATGTATGTTA+GGG | + | chr1.4:6513224-6513243 | MS.gene016180:intron | 40.0% | |
| TCCATATCCTCCTGATTATG+AGG | - | chr1.4:6513729-6513748 | None:intergenic | 40.0% | |
| TCCTCATAATCAGGAGGATA+TGG | + | chr1.4:6513725-6513744 | MS.gene016180:intron | 40.0% | |
| TTAGGGTAATGTCAATGGAG+CGG | + | chr1.4:6513241-6513260 | MS.gene016180:intron | 40.0% | |
| ! | AAAAGGGTATGTGTCTTCTG+CGG | + | chr1.4:6512012-6512031 | MS.gene016180:CDS | 40.0% |
| ! | ACCTGTGCAGGATGATATTT+TGG | - | chr1.4:6513878-6513897 | None:intergenic | 40.0% |
| ! | AGCTTCTGGAGATGATAACT+TGG | + | chr1.4:6513759-6513778 | MS.gene016180:CDS | 40.0% |
| ! | CCTGTGCAGGATGATATTTT+GGG | - | chr1.4:6513877-6513896 | None:intergenic | 40.0% |
| ! | GCTTCTGGAGATGATAACTT+GGG | + | chr1.4:6513760-6513779 | MS.gene016180:CDS | 40.0% |
| !! | GGTTTGTGTTTCAGGTTAAG+AGG | + | chr1.4:6512484-6512503 | MS.gene016180:intron | 40.0% |
| ACAACTATACTCCGAGCACT+GGG | - | chr1.4:6513980-6513999 | None:intergenic | 45.0% | |
| CAGATATCTGGTGAAGCAGT+AGG | + | chr1.4:6513431-6513450 | MS.gene016180:intron | 45.0% | |
| CCCAAAATATCATCCTGCAC+AGG | + | chr1.4:6513874-6513893 | MS.gene016180:intron | 45.0% | |
| GATATCACTTTGGCCCTGTT+CGG | + | chr1.4:6512639-6512658 | MS.gene016180:intron | 45.0% | |
| GATTCATTAAGCCCAGTGCT+CGG | + | chr1.4:6513966-6513985 | MS.gene016180:CDS | 45.0% | |
| GCATGAGAGAAAAGCTGCAA+TGG | + | chr1.4:6513478-6513497 | MS.gene016180:CDS | 45.0% | |
| GTGAAGCAGTAGGTGAAGTA+AGG | + | chr1.4:6513441-6513460 | MS.gene016180:CDS | 45.0% | |
| TAGGGTAATGTCAATGGAGC+GGG | + | chr1.4:6513242-6513261 | MS.gene016180:intron | 45.0% | |
| TGGAACTATGGAAGAGCTTC+TGG | + | chr1.4:6513745-6513764 | MS.gene016180:CDS | 45.0% | |
| ! | GTTGGCCTACTGAATGTTGA+TGG | + | chr1.4:6513896-6513915 | MS.gene016180:CDS | 45.0% |
| !! | GGTGGAAGTGTTGGATTGAT+GGG | + | chr1.4:6512528-6512547 | MS.gene016180:CDS | 45.0% |
| !! | GTTTATGGTGGTGGAAGTGT+TGG | + | chr1.4:6512519-6512538 | MS.gene016180:CDS | 45.0% |
| !! | TGGTGGAAGTGTTGGATTGA+TGG | + | chr1.4:6512527-6512546 | MS.gene016180:CDS | 45.0% |
| AAAAGCTCTCATGCCGCATG+AGG | + | chr1.4:6512972-6512991 | MS.gene016180:CDS | 50.0% | |
| ACTGAAAACATGGCGGTTGC+CGG | - | chr1.4:6512046-6512065 | None:intergenic | 50.0% | |
| AGGGTAATGTCAATGGAGCG+GGG | + | chr1.4:6513243-6513262 | MS.gene016180:intron | 50.0% | |
| GACAACTATACTCCGAGCAC+TGG | - | chr1.4:6513981-6514000 | None:intergenic | 50.0% | |
| TGCAATGGCTCAAGAAGCTG+AGG | + | chr1.4:6513493-6513512 | MS.gene016180:CDS | 50.0% | |
| ! | GAGGCATTTATTGCACTCCC+TGG | + | chr1.4:6513512-6513531 | MS.gene016180:CDS | 50.0% |
| ! | TCATGCGGCATGAGAGCTTT+TGG | - | chr1.4:6512973-6512992 | None:intergenic | 50.0% |
| CGGCGTCACTGAAAACATGG+CGG | - | chr1.4:6512053-6512072 | None:intergenic | 55.0% | |
| TGGCGGCGTCACTGAAAACA+TGG | - | chr1.4:6512056-6512075 | None:intergenic | 55.0% | |
| TTCAGTAGGCCAACCTGTGC+AGG | - | chr1.4:6513890-6513909 | None:intergenic | 55.0% | |
| GTCTTCTGCGGCAGCAACTC+CGG | + | chr1.4:6512024-6512043 | MS.gene016180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6511988 | 6514045 | 6511988 | ID=MS.gene016180 |
| chr1.4 | mRNA | 6511988 | 6514045 | 6511988 | ID=MS.gene016180.t1;Parent=MS.gene016180 |
| chr1.4 | exon | 6511988 | 6512095 | 6511988 | ID=MS.gene016180.t1.exon1;Parent=MS.gene016180.t1 |
| chr1.4 | CDS | 6511988 | 6512095 | 6511988 | ID=cds.MS.gene016180.t1;Parent=MS.gene016180.t1 |
| chr1.4 | exon | 6512498 | 6512595 | 6512498 | ID=MS.gene016180.t1.exon2;Parent=MS.gene016180.t1 |
| chr1.4 | CDS | 6512498 | 6512595 | 6512498 | ID=cds.MS.gene016180.t1;Parent=MS.gene016180.t1 |
| chr1.4 | exon | 6512963 | 6512993 | 6512963 | ID=MS.gene016180.t1.exon3;Parent=MS.gene016180.t1 |
| chr1.4 | CDS | 6512963 | 6512993 | 6512963 | ID=cds.MS.gene016180.t1;Parent=MS.gene016180.t1 |
| chr1.4 | exon | 6513434 | 6513533 | 6513434 | ID=MS.gene016180.t1.exon4;Parent=MS.gene016180.t1 |
| chr1.4 | CDS | 6513434 | 6513533 | 6513434 | ID=cds.MS.gene016180.t1;Parent=MS.gene016180.t1 |
| chr1.4 | exon | 6513738 | 6513808 | 6513738 | ID=MS.gene016180.t1.exon5;Parent=MS.gene016180.t1 |
| chr1.4 | CDS | 6513738 | 6513808 | 6513738 | ID=cds.MS.gene016180.t1;Parent=MS.gene016180.t1 |
| chr1.4 | exon | 6513896 | 6514045 | 6513896 | ID=MS.gene016180.t1.exon6;Parent=MS.gene016180.t1 |
| chr1.4 | CDS | 6513896 | 6514045 | 6513896 | ID=cds.MS.gene016180.t1;Parent=MS.gene016180.t1 |
| Gene Sequence |
| Protein sequence |
