Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22428.t1 | XP_013443105.1 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22428.t1 | Q8L8B8 | 87.0 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 1.9e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22428.t1 | A0A072TU87 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene22428 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene051255 | MS.gene22428 | 0.8028 | 4.72E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene22428 | 0.808524 | 2.97E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene22428 | 0.831088 | 2.03E-55 | -1.69E-46 |
| MS.gene058459 | MS.gene22428 | 0.801442 | 8.99E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene22428 | 0.838603 | 2.61E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene22428 | 0.800489 | 1.41E-48 | -1.69E-46 |
| MS.gene059974 | MS.gene22428 | 0.804811 | 1.81E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene22428 | 0.848857 | 4.69E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22428 | MS.gene007681 | PPI |
| MS.gene22428 | MS.gene20068 | PPI |
| MS.gene22428 | MS.gene055648 | PPI |
| MS.gene22428 | MS.gene050128 | PPI |
| MS.gene22428 | MS.gene029824 | PPI |
| MS.gene22428 | MS.gene08753 | PPI |
| MS.gene22428 | MS.gene016181 | PPI |
| MS.gene22428 | MS.gene034799 | PPI |
| MS.gene22428 | MS.gene24610 | PPI |
| MS.gene22428 | MS.gene41079 | PPI |
| MS.gene22428 | MS.gene016180 | PPI |
| MS.gene22428 | MS.gene007521 | PPI |
| MS.gene22428 | MS.gene051577 | PPI |
| MS.gene22428 | MS.gene007426 | PPI |
| MS.gene22428 | MS.gene028695 | PPI |
| MS.gene22428 | MS.gene08691 | PPI |
| MS.gene22428 | MS.gene33028 | PPI |
| MS.gene22428 | MS.gene52386 | PPI |
| MS.gene31266 | MS.gene22428 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22428.t1 | MTR_7g101290 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene22428.t1 | MTR_0041s0100 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene22428.t1 | MTR_1g064260 | 94.444 | 216 | 12 | 0 | 5 | 220 | 4 | 219 | 8.28e-156 | 430 |
| MS.gene22428.t1 | MTR_2g094790 | 85.854 | 205 | 29 | 0 | 4 | 208 | 3 | 207 | 5.52e-132 | 370 |
| MS.gene22428.t1 | MTR_4g058740 | 89.119 | 193 | 21 | 0 | 13 | 205 | 12 | 204 | 8.76e-128 | 359 |
| MS.gene22428.t1 | MTR_3g113710 | 77.143 | 210 | 48 | 0 | 11 | 220 | 12 | 221 | 3.99e-122 | 345 |
| MS.gene22428.t1 | MTR_1g064260 | 96.319 | 163 | 6 | 0 | 58 | 220 | 1 | 163 | 1.81e-116 | 329 |
| MS.gene22428.t1 | MTR_1g057020 | 73.206 | 209 | 54 | 1 | 11 | 219 | 6 | 212 | 2.79e-113 | 323 |
| MS.gene22428.t1 | MTR_3g113710 | 78.771 | 179 | 38 | 0 | 11 | 189 | 12 | 190 | 8.71e-106 | 305 |
| MS.gene22428.t1 | MTR_1g015830 | 67.327 | 202 | 66 | 0 | 12 | 213 | 7 | 208 | 7.37e-103 | 296 |
| MS.gene22428.t1 | MTR_3g113710 | 78.767 | 146 | 31 | 0 | 75 | 220 | 10 | 155 | 3.16e-82 | 242 |
| MS.gene22428.t1 | MTR_1g015830 | 67.308 | 156 | 51 | 0 | 58 | 213 | 1 | 156 | 1.09e-75 | 226 |
| MS.gene22428.t1 | MTR_1g024145 | 78.723 | 94 | 20 | 0 | 38 | 131 | 159 | 252 | 1.50e-47 | 157 |
| MS.gene22428.t1 | MTR_1g024850 | 75.714 | 70 | 17 | 0 | 11 | 80 | 14 | 83 | 3.30e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22428.t1 | AT2G37210 | 87.019 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 2.34e-136 | 381 |
| MS.gene22428.t1 | AT3G53450 | 86.058 | 208 | 29 | 0 | 1 | 208 | 1 | 208 | 2.98e-134 | 376 |
| MS.gene22428.t1 | AT2G28305 | 85.238 | 210 | 30 | 1 | 11 | 220 | 5 | 213 | 1.57e-130 | 366 |
| MS.gene22428.t1 | AT2G37210 | 77.586 | 232 | 28 | 1 | 1 | 208 | 1 | 232 | 2.30e-130 | 367 |
| MS.gene22428.t1 | AT2G28305 | 90.503 | 179 | 17 | 0 | 11 | 189 | 5 | 183 | 7.72e-120 | 338 |
| MS.gene22428.t1 | AT5G06300 | 79.208 | 202 | 42 | 0 | 11 | 212 | 6 | 207 | 2.38e-119 | 338 |
| MS.gene22428.t1 | AT5G03270 | 83.871 | 186 | 30 | 0 | 11 | 196 | 16 | 201 | 3.47e-113 | 322 |
| MS.gene22428.t1 | AT4G35190 | 71.921 | 203 | 57 | 0 | 7 | 209 | 2 | 204 | 7.23e-110 | 315 |
| MS.gene22428.t1 | AT5G03270 | 83.978 | 181 | 29 | 0 | 11 | 191 | 16 | 196 | 1.98e-109 | 312 |
| MS.gene22428.t1 | AT2G35990 | 72.165 | 194 | 54 | 0 | 11 | 204 | 6 | 199 | 2.42e-108 | 310 |
| MS.gene22428.t1 | AT4G35190 | 73.575 | 193 | 49 | 1 | 7 | 199 | 2 | 192 | 8.53e-104 | 298 |
| MS.gene22428.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene22428.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene22428.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene22428.t1 | AT2G28305 | 90.909 | 132 | 12 | 0 | 11 | 142 | 5 | 136 | 4.23e-86 | 252 |
| MS.gene22428.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene22428.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene22428.t1 | AT5G11950 | 66.026 | 156 | 53 | 0 | 58 | 213 | 1 | 156 | 7.11e-75 | 224 |
| MS.gene22428.t1 | AT5G26140 | 52.318 | 151 | 50 | 1 | 85 | 213 | 6 | 156 | 2.22e-47 | 154 |
| MS.gene22428.t1 | AT5G26140 | 51.095 | 137 | 45 | 1 | 99 | 213 | 1 | 137 | 4.90e-40 | 134 |
| MS.gene22428.t1 | AT5G26140 | 54.717 | 106 | 48 | 0 | 108 | 213 | 17 | 122 | 8.55e-36 | 123 |
Find 51 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATTGATCTTGTTTA+TGG | 0.168735 | 7.1:-8663711 | MS.gene22428:CDS |
| TTAACTTATGCAGGTGGATA+TGG | 0.277547 | 7.1:-8661811 | MS.gene22428:intron |
| CAATTCATTGCCAAGGTTCA+TGG | 0.335336 | 7.1:+8664380 | None:intergenic |
| ACAATTATGTGACGAGCATT+TGG | 0.366388 | 7.1:+8661545 | None:intergenic |
| ACTCACGCAATGGTGAAATA+AGG | 0.394030 | 7.1:-8664476 | MS.gene22428:CDS |
| GTTGGATTAGTAAATGTTGA+TGG | 0.409542 | 7.1:-8661626 | MS.gene22428:CDS |
| CTCTCGAGGCATGAGTGTCT+TGG | 0.437050 | 7.1:+8663409 | None:intergenic |
| GATGGTGGTCGCCATGTCAT+TGG | 0.439047 | 7.1:-8663642 | MS.gene22428:CDS |
| ATTGACAAAGCTGTGGAAGA+AGG | 0.461566 | 7.1:-8661578 | MS.gene22428:CDS |
| TCTCGAGGCATGAGTGTCTT+GGG | 0.468747 | 7.1:+8663410 | None:intergenic |
| CATGAACCTTGGCAATGAAT+TGG | 0.469550 | 7.1:-8664379 | MS.gene22428:intron |
| TTCCATCTGCCAGCTCAACT+TGG | 0.470523 | 7.1:+8661002 | None:intergenic |
| TTGAGATGTCATAATCTTGA+GGG | 0.471297 | 7.1:+8660965 | None:intergenic |
| GTCATAACATGGGCTCAACT+TGG | 0.475221 | 7.1:-8661766 | MS.gene22428:CDS |
| GTTTCTCAAGCTGTTCATGA+TGG | 0.477189 | 7.1:-8663660 | MS.gene22428:CDS |
| ATTGATCTTGTTTATGGAGG+AGG | 0.482065 | 7.1:-8663705 | MS.gene22428:CDS |
| CAAGGTTCATGGCAGCATCT+TGG | 0.485744 | 7.1:+8664391 | None:intergenic |
| AAAAGAGTTAGTTAAGAAGT+TGG | 0.487121 | 7.1:-8661507 | MS.gene22428:CDS |
| AGGAGGAAGCATTGGTCTCA+TGG | 0.491447 | 7.1:-8663688 | MS.gene22428:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.504128 | 7.1:-8663696 | MS.gene22428:CDS |
| GTGTTGCTTCCAAGTTGAGC+TGG | 0.509075 | 7.1:-8661011 | MS.gene22428:CDS |
| TGCTAAGTGCTAACCTGGTA+AGG | 0.510169 | 7.1:+8663104 | None:intergenic |
| ATGGTGGTCGCCATGTCATT+GGG | 0.511363 | 7.1:-8663641 | MS.gene22428:intron |
| AGAGTTAGTTAAGAAGTTGG+AGG | 0.516344 | 7.1:-8661504 | MS.gene22428:intron |
| TTGACAAAGCTGTGGAAGAA+GGG | 0.531943 | 7.1:-8661577 | MS.gene22428:CDS |
| AACATTGATCTTGTTTATGG+AGG | 0.533518 | 7.1:-8663708 | MS.gene22428:CDS |
| CAAGATGCTGCCATGAACCT+TGG | 0.535202 | 7.1:-8664390 | MS.gene22428:CDS |
| CTCAAGATTATGACATCTCA+AGG | 0.546895 | 7.1:-8660963 | MS.gene22428:CDS |
| GCATCAAAGGAAAGCTGAGA+TGG | 0.549979 | 7.1:-8663151 | MS.gene22428:CDS |
| GGAGGAAGCATTGGTCTCAT+GGG | 0.550392 | 7.1:-8663687 | MS.gene22428:CDS |
| TACATACCAATTCATTGCCA+AGG | 0.561261 | 7.1:+8664373 | None:intergenic |
| TTCCAAGTTGAGCTGGCAGA+TGG | 0.564883 | 7.1:-8661004 | MS.gene22428:CDS |
| CAGCTAACTGGTGAAACAGT+AGG | 0.567165 | 7.1:-8663198 | MS.gene22428:CDS |
| CTGTTGCTGATATGCATCAA+AGG | 0.573128 | 7.1:-8663164 | MS.gene22428:CDS |
| CTTGAGATGTCATAATCTTG+AGG | 0.576949 | 7.1:+8660964 | None:intergenic |
| TAACAAATGGACTCACGCAA+TGG | 0.580220 | 7.1:-8664486 | None:intergenic |
| TCTCAAGCTGTTCATGATGG+TGG | 0.580895 | 7.1:-8663657 | MS.gene22428:CDS |
| TACTAGACAAATACCTCTCG+AGG | 0.584424 | 7.1:+8663395 | None:intergenic |
| GAAGCAACACCCTCATGACA+TGG | 0.600653 | 7.1:+8661024 | None:intergenic |
| AACTTCTTGAAGTCATAACA+TGG | 0.604120 | 7.1:-8661777 | MS.gene22428:CDS |
| ACTTGGAATTCATGACAAGC+CGG | 0.616968 | 7.1:-8661749 | MS.gene22428:intron |
| GGAGTATGTTCCATGTCATG+AGG | 0.617100 | 7.1:-8661034 | MS.gene22428:CDS |
| GTTCATGGCAGCATCTTGGT+AGG | 0.620771 | 7.1:+8664395 | None:intergenic |
| TGAAACAGTAGGAGAAGTGA+AGG | 0.624185 | 7.1:-8663187 | MS.gene22428:CDS |
| CAAGACACTCATGCCTCGAG+AGG | 0.636692 | 7.1:-8663408 | MS.gene22428:intron |
| GTCATTCATTGACAAAGCTG+TGG | 0.639783 | 7.1:-8661585 | MS.gene22428:CDS |
| GAGTATGTTCCATGTCATGA+GGG | 0.646303 | 7.1:-8661033 | MS.gene22428:CDS |
| GTGTTATATACCCAATGACA+TGG | 0.655296 | 7.1:+8663631 | None:intergenic |
| AGGTGGATATGGAACTCTAG+AGG | 0.671132 | 7.1:-8661800 | MS.gene22428:CDS |
| TTTGTCAATGAATGACAACA+AGG | 0.686987 | 7.1:+8661592 | None:intergenic |
| ACTTCTTGAAGTCATAACAT+GGG | 0.690032 | 7.1:-8661776 | MS.gene22428:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATATGAAAATGT+CGG | + | chr7.1:8662459-8662478 | None:intergenic | 10.0% |
| !! | TTTAAAAATGAAAGATAAAA+AGG | + | chr7.1:8662600-8662619 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTTTGACAA+TGG | + | chr7.1:8664049-8664068 | None:intergenic | 10.0% |
| !!! | TCCAATATTTTATATTTTAA+GGG | + | chr7.1:8662955-8662974 | None:intergenic | 10.0% |
| !! | ATACTCAAAATAAATTACTT+AGG | + | chr7.1:8663229-8663248 | None:intergenic | 15.0% |
| !! | CTAATTAATAAGTATACAAT+TGG | + | chr7.1:8664330-8664349 | None:intergenic | 15.0% |
| !! | TCCCTTAAAATATAAAATAT+TGG | - | chr7.1:8662951-8662970 | MS.gene22428:intron | 15.0% |
| !! | TTATCATTTATGAATTAATC+TGG | - | chr7.1:8663770-8663789 | MS.gene22428:intron | 15.0% |
| !!! | AAGATTTGAAATTAATTTAC+AGG | - | chr7.1:8664385-8664404 | MS.gene22428:CDS | 15.0% |
| !!! | ATTTTATATTTTAAGGGATA+AGG | + | chr7.1:8662949-8662968 | None:intergenic | 15.0% |
| !!! | GTCCAATATTTTATATTTTA+AGG | + | chr7.1:8662956-8662975 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTGTTTACT+TGG | - | chr7.1:8662470-8662489 | MS.gene22428:intron | 15.0% |
| !!! | TTTTAAAACAACATGATTTA+AGG | + | chr7.1:8662756-8662775 | None:intergenic | 15.0% |
| !! | ACCTTAATATGAAACAAAAA+TGG | + | chr7.1:8661401-8661420 | None:intergenic | 20.0% |
| !! | TACAATTCAGATTATAATCA+TGG | - | chr7.1:8663567-8663586 | MS.gene22428:intron | 20.0% |
| !! | TCCAATGTTTATGATTAATA+AGG | - | chr7.1:8662867-8662886 | MS.gene22428:intron | 20.0% |
| !! | TCCTTATTAATCATAAACAT+TGG | + | chr7.1:8662871-8662890 | None:intergenic | 20.0% |
| !! | TGTTAATTAATGAGTAAAAG+AGG | + | chr7.1:8661970-8661989 | None:intergenic | 20.0% |
| !! | TTTAATAACAGAAGGTAAAA+GGG | + | chr7.1:8662081-8662100 | None:intergenic | 20.0% |
| !!! | AAAAATGTTGTTTATGTGTT+TGG | - | chr7.1:8662204-8662223 | MS.gene22428:intron | 20.0% |
| !!! | AACACTTTGATTAATGTTTT+TGG | + | chr7.1:8661361-8661380 | None:intergenic | 20.0% |
| !!! | ACACTTTGATTAATGTTTTT+GGG | + | chr7.1:8661360-8661379 | None:intergenic | 20.0% |
| !!! | GAAACAATTGTTTTTTTCAA+AGG | + | chr7.1:8662435-8662454 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTTTCATATTA+AGG | - | chr7.1:8661397-8661416 | MS.gene22428:intron | 20.0% |
| !!! | TTGTTTTTGTTGATTTGATT+TGG | - | chr7.1:8662636-8662655 | MS.gene22428:intron | 20.0% |
| ! | AAAAGAGTTAGTTAAGAAGT+TGG | - | chr7.1:8663933-8663952 | MS.gene22428:intron | 25.0% |
| ! | AACTCACTTATTGAAAAATG+TGG | + | chr7.1:8661161-8661180 | None:intergenic | 25.0% |
| ! | AAGGTTATATACTCTGTATT+TGG | - | chr7.1:8661290-8661309 | MS.gene22428:intron | 25.0% |
| ! | ACTATACTAACTAAATACCA+TGG | - | chr7.1:8663422-8663441 | MS.gene22428:intron | 25.0% |
| ! | AGAGAACAAAAATTAACACT+TGG | - | chr7.1:8661912-8661931 | MS.gene22428:intron | 25.0% |
| ! | AGATATAGATTCCTCAAAAT+TGG | + | chr7.1:8663732-8663751 | None:intergenic | 25.0% |
| ! | ATAATTACAAACTTGTAGGT+TGG | - | chr7.1:8663796-8663815 | MS.gene22428:intron | 25.0% |
| ! | ATTCAGATTATAATCATGGA+TGG | - | chr7.1:8663571-8663590 | MS.gene22428:intron | 25.0% |
| ! | CTTTAATAACAGAAGGTAAA+AGG | + | chr7.1:8662082-8662101 | None:intergenic | 25.0% |
| ! | GAAACAAGAAAACCAAATAA+CGG | + | chr7.1:8661661-8661680 | None:intergenic | 25.0% |
| ! | GCTTATAATTACAAACTTGT+AGG | - | chr7.1:8663792-8663811 | MS.gene22428:intron | 25.0% |
| ! | TAATTCGTAAACAACTTTCA+TGG | - | chr7.1:8662829-8662848 | MS.gene22428:intron | 25.0% |
| ! | TAGTACACTTTAATAACAGA+AGG | + | chr7.1:8662089-8662108 | None:intergenic | 25.0% |
| ! | TATGATATTGTAGAGAATTG+CGG | - | chr7.1:8663475-8663494 | MS.gene22428:intron | 25.0% |
| ! | TCAAAGTTATTCATTACTTG+TGG | + | chr7.1:8662671-8662690 | None:intergenic | 25.0% |
| ! | TCTAAACATAAGAGAAAATC+AGG | + | chr7.1:8662175-8662194 | None:intergenic | 25.0% |
| ! | TTAATAACAGAAGGTAAAAG+GGG | + | chr7.1:8662080-8662099 | None:intergenic | 25.0% |
| ! | TTATATACAAGTCATTCCTT+GGG | + | chr7.1:8663338-8663357 | None:intergenic | 25.0% |
| ! | TTGTAACATCAATGTTTGTT+AGG | + | chr7.1:8663552-8663571 | None:intergenic | 25.0% |
| ! | TTTATATACAAGTCATTCCT+TGG | + | chr7.1:8663339-8663358 | None:intergenic | 25.0% |
| ! | TTTGGGCTTAATGTATATAA+TGG | + | chr7.1:8661343-8661362 | None:intergenic | 25.0% |
| !! | AAAAGAATTTGTGTTTTCTG+TGG | - | chr7.1:8660999-8661018 | MS.gene22428:CDS | 25.0% |
| !! | AACAAAAGTAGTGGAAAAAA+TGG | + | chr7.1:8663031-8663050 | None:intergenic | 25.0% |
| !! | AGTGAATTTCAGTTTTTGTA+AGG | - | chr7.1:8661271-8661290 | MS.gene22428:intron | 25.0% |
| !! | TACCTATAGTTTTCTTAGTT+AGG | + | chr7.1:8663974-8663993 | None:intergenic | 25.0% |
| !! | TTTCAATAAGTGAGTTGAAA+TGG | - | chr7.1:8661165-8661184 | MS.gene22428:intron | 25.0% |
| !! | TTTCTTTTCTTTCATCACAT+GGG | - | chr7.1:8661589-8661608 | MS.gene22428:CDS | 25.0% |
| !! | TTTTCTGAATTAACTTATGC+AGG | - | chr7.1:8663620-8663639 | MS.gene22428:intron | 25.0% |
| !! | TTTTCTTTTCTTTCATCACA+TGG | - | chr7.1:8661588-8661607 | MS.gene22428:CDS | 25.0% |
| !!! | ATATTTTAAGGGATAAGGTA+AGG | + | chr7.1:8662944-8662963 | None:intergenic | 25.0% |
| !!! | ATTATCAAGTAAGCTTTGAA+GGG | + | chr7.1:8662901-8662920 | None:intergenic | 25.0% |
| AAAAGAGGTTAACAAAAGCT+TGG | + | chr7.1:8661955-8661974 | None:intergenic | 30.0% | |
| AACTTCTTGAAGTCATAACA+TGG | - | chr7.1:8663663-8663682 | MS.gene22428:CDS | 30.0% | |
| AATGAGGGAAAGTAAAGAAA+AGG | - | chr7.1:8663091-8663110 | MS.gene22428:intron | 30.0% | |
| ACTTCTTGAAGTCATAACAT+GGG | - | chr7.1:8663664-8663683 | MS.gene22428:CDS | 30.0% | |
| AGGAATCAAACAATGAGATA+TGG | + | chr7.1:8662415-8662434 | None:intergenic | 30.0% | |
| ATGAATAACTTTGACTAGTG+TGG | - | chr7.1:8662677-8662696 | MS.gene22428:intron | 30.0% | |
| CAAAGAAAGTGATTTCACAT+GGG | + | chr7.1:8664182-8664201 | None:intergenic | 30.0% | |
| CAGTAGAAAGGTTATTGAAA+AGG | + | chr7.1:8663170-8663189 | None:intergenic | 30.0% | |
| CCACGATTTAAATAAATCCA+TGG | + | chr7.1:8663442-8663461 | None:intergenic | 30.0% | |
| CCATGGATTTATTTAAATCG+TGG | - | chr7.1:8663439-8663458 | MS.gene22428:intron | 30.0% | |
| CTCTCAAAGTTGTACTATTT+GGG | - | chr7.1:8661874-8661893 | MS.gene22428:intron | 30.0% | |
| GTCCTAACTAAGAAAACTAT+AGG | - | chr7.1:8663969-8663988 | MS.gene22428:intron | 30.0% | |
| TCAAAGAAAGTGATTTCACA+TGG | + | chr7.1:8664183-8664202 | None:intergenic | 30.0% | |
| TCTCTCAAAGTTGTACTATT+TGG | - | chr7.1:8661873-8661892 | MS.gene22428:intron | 30.0% | |
| TTGAGATGTCATAATCTTGA+GGG | + | chr7.1:8664478-8664497 | None:intergenic | 30.0% | |
| TTGGACATGTCAATTATTAC+CGG | + | chr7.1:8663713-8663732 | None:intergenic | 30.0% | |
| TTGGATAAACTAGAGGATAT+TGG | + | chr7.1:8664079-8664098 | None:intergenic | 30.0% | |
| TTGTGAGAATCAGATTGAAA+AGG | + | chr7.1:8664145-8664164 | None:intergenic | 30.0% | |
| TTTGTCAATGAATGACAACA+AGG | + | chr7.1:8663851-8663870 | None:intergenic | 30.0% | |
| ! | AACATTGATCTTGTTTATGG+AGG | - | chr7.1:8661732-8661751 | MS.gene22428:intron | 30.0% |
| ! | AACTATTGTTGTGTTTTGTG+GGG | - | chr7.1:8662557-8662576 | MS.gene22428:intron | 30.0% |
| ! | AATTGACATGTCCAATTTTG+AGG | - | chr7.1:8663718-8663737 | MS.gene22428:CDS | 30.0% |
| ! | AGGAACATTGATCTTGTTTA+TGG | - | chr7.1:8661729-8661748 | MS.gene22428:intron | 30.0% |
| ! | AGTTTTCAATCACTCTTTCT+TGG | - | chr7.1:8663290-8663309 | MS.gene22428:intron | 30.0% |
| ! | CAACTATTGTTGTGTTTTGT+GGG | - | chr7.1:8662556-8662575 | MS.gene22428:intron | 30.0% |
| ! | CATTATCAAGTAAGCTTTGA+AGG | + | chr7.1:8662902-8662921 | None:intergenic | 30.0% |
| ! | GTTTTCAATCACTCTTTCTT+GGG | - | chr7.1:8663291-8663310 | MS.gene22428:intron | 30.0% |
| ! | TTAACTAACTCTTTTGCAGT+TGG | + | chr7.1:8663928-8663947 | None:intergenic | 30.0% |
| ! | TTTTAGTCCGTACAAATGTT+TGG | + | chr7.1:8661447-8661466 | None:intergenic | 30.0% |
| !! | ACTTGCTTCATTTGATAATG+AGG | - | chr7.1:8663075-8663094 | MS.gene22428:intron | 30.0% |
| !! | CTTGCTTCATTTGATAATGA+GGG | - | chr7.1:8663076-8663095 | MS.gene22428:intron | 30.0% |
| !! | GTTGGATTAGTAAATGTTGA+TGG | - | chr7.1:8663814-8663833 | MS.gene22428:intron | 30.0% |
| !!! | TGATGTTGTTTGTTTTGTGA+AGG | - | chr7.1:8661701-8661720 | MS.gene22428:intron | 30.0% |
| !!! | TTTGTTTTGTGAAGGTTTCA+AGG | - | chr7.1:8661709-8661728 | MS.gene22428:intron | 30.0% |
| AAAATTAGTGACAGAGAGAG+TGG | - | chr7.1:8663251-8663270 | MS.gene22428:intron | 35.0% | |
| AACTAGTACTAGCAGTAGAA+AGG | + | chr7.1:8663182-8663201 | None:intergenic | 35.0% | |
| ACAAGAAAACCAAATAACGG+TGG | + | chr7.1:8661658-8661677 | None:intergenic | 35.0% | |
| ACAATTATGTGACGAGCATT+TGG | + | chr7.1:8663898-8663917 | None:intergenic | 35.0% | |
| AGAGTTAGTTAAGAAGTTGG+AGG | - | chr7.1:8663936-8663955 | MS.gene22428:intron | 35.0% | |
| CACTGTTCAAACAAAAGTAG+TGG | + | chr7.1:8663040-8663059 | None:intergenic | 35.0% | |
| CCACAAAACACAACAATAGT+TGG | + | chr7.1:8662558-8662577 | None:intergenic | 35.0% | |
| CGCTCAAAATTTGATGTATC+TGG | - | chr7.1:8662115-8662134 | MS.gene22428:intron | 35.0% | |
| CTCAAGATTATGACATCTCA+AGG | - | chr7.1:8664477-8664496 | MS.gene22428:CDS | 35.0% | |
| CTCTGAACCAAACATTTGTA+CGG | - | chr7.1:8661437-8661456 | MS.gene22428:intron | 35.0% | |
| CTTGAGATGTCATAATCTTG+AGG | + | chr7.1:8664479-8664498 | None:intergenic | 35.0% | |
| GAAAAGGATGAAACAATGTC+AGG | + | chr7.1:8663154-8663173 | None:intergenic | 35.0% | |
| GAACTTCTTGGATAAACTAG+AGG | + | chr7.1:8664086-8664105 | None:intergenic | 35.0% | |
| GAAGGTAAAAAGTGAGAAGA+AGG | + | chr7.1:8661514-8661533 | None:intergenic | 35.0% | |
| GTGTTATATACCCAATGACA+TGG | + | chr7.1:8661812-8661831 | None:intergenic | 35.0% | |
| GTTTGATGTAGCTTCAATTG+TGG | - | chr7.1:8663506-8663525 | MS.gene22428:intron | 35.0% | |
| TACATACCAATTCATTGCCA+AGG | + | chr7.1:8661070-8661089 | None:intergenic | 35.0% | |
| TCCAAATGTAGCTATGGATA+TGG | + | chr7.1:8663391-8663410 | None:intergenic | 35.0% | |
| TCTGAATTAACTTATGCAGG+TGG | - | chr7.1:8663623-8663642 | MS.gene22428:intron | 35.0% | |
| TCTGATCAACTATATGGTTC+AGG | - | chr7.1:8662998-8663017 | MS.gene22428:intron | 35.0% | |
| TGTGTCTCTGATCAACTATA+TGG | - | chr7.1:8662992-8663011 | MS.gene22428:intron | 35.0% | |
| TTAACTTATGCAGGTGGATA+TGG | - | chr7.1:8663629-8663648 | MS.gene22428:intron | 35.0% | |
| TTAAGGGATAAGGTAAGGTA+AGG | + | chr7.1:8662939-8662958 | None:intergenic | 35.0% | |
| TTATTTAAATCGTGGTCGCA+TGG | - | chr7.1:8663447-8663466 | MS.gene22428:intron | 35.0% | |
| TTTGTGTCCAAATGTAGCTA+TGG | + | chr7.1:8663397-8663416 | None:intergenic | 35.0% | |
| ! | ATTGATCTTGTTTATGGAGG+AGG | - | chr7.1:8661735-8661754 | MS.gene22428:intron | 35.0% |
| ! | CCAACTATTGTTGTGTTTTG+TGG | - | chr7.1:8662555-8662574 | MS.gene22428:intron | 35.0% |
| ! | CCTAAGAAAATTGATTCCCA+AGG | - | chr7.1:8663319-8663338 | MS.gene22428:intron | 35.0% |
| ! | CCTTGGGAATCAATTTTCTT+AGG | + | chr7.1:8663322-8663341 | None:intergenic | 35.0% |
| ! | GTGAGTTGAAATGGTGTATA+TGG | - | chr7.1:8661174-8661193 | MS.gene22428:intron | 35.0% |
| ! | GTTTGAAGCAATGAGAAAAG+AGG | + | chr7.1:8662800-8662819 | None:intergenic | 35.0% |
| ! | TGGGAATCAATTTTCTTAGG+AGG | + | chr7.1:8663319-8663338 | None:intergenic | 35.0% |
| !! | CACTACTTTTGTTTGAACAG+TGG | - | chr7.1:8663038-8663057 | MS.gene22428:intron | 35.0% |
| !! | CTTTGAAATGCAAACAGTGA+AGG | + | chr7.1:8661532-8661551 | None:intergenic | 35.0% |
| !!! | TGGTAGGTAGTTTTTTTACC+AGG | + | chr7.1:8661032-8661051 | None:intergenic | 35.0% |
| !!! | TGGTTGCTTTTTAGACAGAA+TGG | - | chr7.1:8662490-8662509 | MS.gene22428:intron | 35.0% |
| AAACACTGGCAAGAACTTCT+TGG | + | chr7.1:8664098-8664117 | None:intergenic | 40.0% | |
| AAGTTCTTGCCAGTGTTTGT+TGG | - | chr7.1:8664100-8664119 | MS.gene22428:intron | 40.0% | |
| ACTCACGCAATGGTGAAATA+AGG | - | chr7.1:8660964-8660983 | MS.gene22428:CDS | 40.0% | |
| ACTTGGAATTCATGACAAGC+CGG | - | chr7.1:8663691-8663710 | MS.gene22428:CDS | 40.0% | |
| ATTGACAAAGCTGTGGAAGA+AGG | - | chr7.1:8663862-8663881 | MS.gene22428:intron | 40.0% | |
| CAATTCATTGCCAAGGTTCA+TGG | + | chr7.1:8661063-8661082 | None:intergenic | 40.0% | |
| CATGAACCTTGGCAATGAAT+TGG | - | chr7.1:8661061-8661080 | MS.gene22428:intron | 40.0% | |
| CCATTCATTGAGGACAAGAA+AGG | - | chr7.1:8662701-8662720 | MS.gene22428:intron | 40.0% | |
| CCTTTCTTGTCCTCAATGAA+TGG | + | chr7.1:8662704-8662723 | None:intergenic | 40.0% | |
| CTGTTGCTGATATGCATCAA+AGG | - | chr7.1:8662276-8662295 | MS.gene22428:intron | 40.0% | |
| GAGTATGTTCCATGTCATGA+GGG | - | chr7.1:8664407-8664426 | MS.gene22428:CDS | 40.0% | |
| GCCATATCCATAGCTACATT+TGG | - | chr7.1:8663387-8663406 | MS.gene22428:intron | 40.0% | |
| GTAATAGTGCCAACAAACAC+TGG | + | chr7.1:8664112-8664131 | None:intergenic | 40.0% | |
| GTCATTCATTGACAAAGCTG+TGG | - | chr7.1:8663855-8663874 | MS.gene22428:intron | 40.0% | |
| GTTTCTCAAGCTGTTCATGA+TGG | - | chr7.1:8661780-8661799 | MS.gene22428:CDS | 40.0% | |
| TACTAGACAAATACCTCTCG+AGG | + | chr7.1:8662048-8662067 | None:intergenic | 40.0% | |
| TCATAGTCACCACCGTTATT+TGG | - | chr7.1:8661646-8661665 | MS.gene22428:intron | 40.0% | |
| TGAAACAGTAGGAGAAGTGA+AGG | - | chr7.1:8662253-8662272 | MS.gene22428:intron | 40.0% | |
| TTGACAAAGCTGTGGAAGAA+GGG | - | chr7.1:8663863-8663882 | MS.gene22428:intron | 40.0% | |
| ! | GATGCTTTTATTGCCTTACC+AGG | - | chr7.1:8662323-8662342 | MS.gene22428:intron | 40.0% |
| ! | TGTTTGTTAGGTCTATGCGA+CGG | + | chr7.1:8663540-8663559 | None:intergenic | 40.0% |
| !!! | GATGTCATTTTGCAGCTAAC+TGG | - | chr7.1:8662230-8662249 | MS.gene22428:intron | 40.0% |
| AGGTGGATATGGAACTCTAG+AGG | - | chr7.1:8663640-8663659 | MS.gene22428:intron | 45.0% | |
| ATTAGTGACAGAGAGAGTGG+AGG | - | chr7.1:8663254-8663273 | MS.gene22428:intron | 45.0% | |
| CAGCTAACTGGTGAAACAGT+AGG | - | chr7.1:8662242-8662261 | MS.gene22428:intron | 45.0% | |
| CTAGTGTGGTCCATTCATTG+AGG | - | chr7.1:8662691-8662710 | MS.gene22428:intron | 45.0% | |
| CTATGGATATGGCAGTGTCA+GGG | + | chr7.1:8663380-8663399 | None:intergenic | 45.0% | |
| GATGAAACAATGTCAGGTGC+AGG | + | chr7.1:8663148-8663167 | None:intergenic | 45.0% | |
| GCATCAAAGGAAAGCTGAGA+TGG | - | chr7.1:8662289-8662308 | MS.gene22428:intron | 45.0% | |
| GGAGTATGTTCCATGTCATG+AGG | - | chr7.1:8664406-8664425 | MS.gene22428:CDS | 45.0% | |
| GTCATAACATGGGCTCAACT+TGG | - | chr7.1:8663674-8663693 | MS.gene22428:CDS | 45.0% | |
| TATGGATATGGCAGTGTCAG+GGG | + | chr7.1:8663379-8663398 | None:intergenic | 45.0% | |
| TCTCAAGCTGTTCATGATGG+TGG | - | chr7.1:8661783-8661802 | MS.gene22428:CDS | 45.0% | |
| TGCTAAGTGCTAACCTGGTA+AGG | + | chr7.1:8662339-8662358 | None:intergenic | 45.0% | |
| TTGCATGCTAAGTGCTAACC+TGG | + | chr7.1:8662344-8662363 | None:intergenic | 45.0% | |
| TTTAAATCGTGGTCGCATGG+CGG | - | chr7.1:8663450-8663469 | MS.gene22428:intron | 45.0% | |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | - | chr7.1:8661744-8661763 | MS.gene22428:intron | 45.0% |
| ! | GTTTTCTGTGGAAGTAGTCC+TGG | - | chr7.1:8661011-8661030 | MS.gene22428:CDS | 45.0% |
| ATATGGCAGTGTCAGGGGAA+AGG | + | chr7.1:8663374-8663393 | None:intergenic | 50.0% | |
| ATGGTGGTCGCCATGTCATT+GGG | - | chr7.1:8661799-8661818 | MS.gene22428:CDS | 50.0% | |
| CAAGATGCTGCCATGAACCT+TGG | - | chr7.1:8661050-8661069 | MS.gene22428:intron | 50.0% | |
| CAAGGTTCATGGCAGCATCT+TGG | + | chr7.1:8661052-8661071 | None:intergenic | 50.0% | |
| GAAGCAACACCCTCATGACA+TGG | + | chr7.1:8664419-8664438 | None:intergenic | 50.0% | |
| GCTATGGATATGGCAGTGTC+AGG | + | chr7.1:8663381-8663400 | None:intergenic | 50.0% | |
| GTTCATGGCAGCATCTTGGT+AGG | + | chr7.1:8661048-8661067 | None:intergenic | 50.0% | |
| TCTCGAGGCATGAGTGTCTT+GGG | + | chr7.1:8662033-8662052 | None:intergenic | 50.0% | |
| TGTCAGGTGCAGGTGCTAAT+TGG | + | chr7.1:8663138-8663157 | None:intergenic | 50.0% | |
| TTCCATCTGCCAGCTCAACT+TGG | + | chr7.1:8664441-8664460 | None:intergenic | 50.0% | |
| ! | TTCCAAGTTGAGCTGGCAGA+TGG | - | chr7.1:8664436-8664455 | MS.gene22428:CDS | 50.0% |
| !! | AGGAGGAAGCATTGGTCTCA+TGG | - | chr7.1:8661752-8661771 | MS.gene22428:CDS | 50.0% |
| !! | GGAGGAAGCATTGGTCTCAT+GGG | - | chr7.1:8661753-8661772 | MS.gene22428:CDS | 50.0% |
| !! | GTGTTGCTTCCAAGTTGAGC+TGG | - | chr7.1:8664429-8664448 | MS.gene22428:CDS | 50.0% |
| CAAGACACTCATGCCTCGAG+AGG | - | chr7.1:8662032-8662051 | MS.gene22428:intron | 55.0% | |
| CTCTCGAGGCATGAGTGTCT+TGG | + | chr7.1:8662034-8662053 | None:intergenic | 55.0% | |
| ! | GATGGTGGTCGCCATGTCAT+TGG | - | chr7.1:8661798-8661817 | MS.gene22428:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 8660960 | 8664502 | 8660960 | ID=MS.gene22428 |
| chr7.1 | mRNA | 8660960 | 8664502 | 8660960 | ID=MS.gene22428.t1;Parent=MS.gene22428 |
| chr7.1 | exon | 8664380 | 8664502 | 8664380 | ID=MS.gene22428.t1.exon1;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8664380 | 8664502 | 8664380 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| chr7.1 | exon | 8663642 | 8663739 | 8663642 | ID=MS.gene22428.t1.exon2;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8663642 | 8663739 | 8663642 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| chr7.1 | exon | 8663409 | 8663439 | 8663409 | ID=MS.gene22428.t1.exon3;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8663409 | 8663439 | 8663409 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| chr7.1 | exon | 8663118 | 8663217 | 8663118 | ID=MS.gene22428.t1.exon4;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8663118 | 8663217 | 8663118 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| chr7.1 | exon | 8661750 | 8661820 | 8661750 | ID=MS.gene22428.t1.exon5;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8661750 | 8661820 | 8661750 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| chr7.1 | exon | 8661505 | 8661648 | 8661505 | ID=MS.gene22428.t1.exon6;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8661505 | 8661648 | 8661505 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| chr7.1 | exon | 8660960 | 8661055 | 8660960 | ID=MS.gene22428.t1.exon7;Parent=MS.gene22428.t1 |
| chr7.1 | CDS | 8660960 | 8661055 | 8660960 | ID=cds.MS.gene22428.t1;Parent=MS.gene22428.t1 |
| Gene Sequence |
| Protein sequence |
