Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029824.t1 | XP_003590484.1 | 99.1 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 2.00E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029824.t1 | Q8L8B8 | 85.6 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 1.5e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029824.t1 | G7IBJ6 | 99.1 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 1.5e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029824 | MS.gene016180 | PPI |
| MS.gene33028 | MS.gene029824 | PPI |
| MS.gene029824 | MS.gene007426 | PPI |
| MS.gene007521 | MS.gene029824 | PPI |
| MS.gene24610 | MS.gene029824 | PPI |
| MS.gene029824 | MS.gene52386 | PPI |
| MS.gene22428 | MS.gene029824 | PPI |
| MS.gene029824 | MS.gene028695 | PPI |
| MS.gene029824 | MS.gene20068 | PPI |
| MS.gene029824 | MS.gene055648 | PPI |
| MS.gene007681 | MS.gene029824 | PPI |
| MS.gene051577 | MS.gene029824 | PPI |
| MS.gene31266 | MS.gene029824 | PPI |
| MS.gene034799 | MS.gene029824 | PPI |
| MS.gene029824 | MS.gene016181 | PPI |
| MS.gene050128 | MS.gene029824 | PPI |
| MS.gene029824 | MS.gene41079 | PPI |
| MS.gene08753 | MS.gene029824 | PPI |
| MS.gene08691 | MS.gene029824 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029824.t1 | MTR_1g064260 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 3.90e-162 | 446 |
| MS.gene029824.t1 | MTR_7g101290 | 93.981 | 216 | 13 | 0 | 4 | 219 | 5 | 220 | 6.41e-155 | 428 |
| MS.gene029824.t1 | MTR_0041s0100 | 93.981 | 216 | 13 | 0 | 4 | 219 | 5 | 220 | 6.41e-155 | 428 |
| MS.gene029824.t1 | MTR_2g094790 | 85.507 | 207 | 30 | 0 | 1 | 207 | 1 | 207 | 2.72e-132 | 370 |
| MS.gene029824.t1 | MTR_4g058740 | 89.637 | 193 | 20 | 0 | 12 | 204 | 12 | 204 | 6.05e-128 | 359 |
| MS.gene029824.t1 | MTR_3g113710 | 76.190 | 210 | 50 | 0 | 10 | 219 | 12 | 221 | 2.64e-122 | 346 |
| MS.gene029824.t1 | MTR_1g064260 | 98.773 | 163 | 2 | 0 | 57 | 219 | 1 | 163 | 5.10e-118 | 333 |
| MS.gene029824.t1 | MTR_1g057020 | 71.770 | 209 | 57 | 1 | 10 | 218 | 6 | 212 | 1.04e-111 | 318 |
| MS.gene029824.t1 | MTR_3g113710 | 78.771 | 179 | 38 | 0 | 10 | 188 | 12 | 190 | 5.25e-107 | 308 |
| MS.gene029824.t1 | MTR_1g015830 | 67.327 | 202 | 66 | 0 | 11 | 212 | 7 | 208 | 4.66e-102 | 294 |
| MS.gene029824.t1 | MTR_3g113710 | 76.712 | 146 | 34 | 0 | 74 | 219 | 10 | 155 | 4.44e-81 | 239 |
| MS.gene029824.t1 | MTR_1g015830 | 66.026 | 156 | 53 | 0 | 57 | 212 | 1 | 156 | 3.45e-74 | 222 |
| MS.gene029824.t1 | MTR_1g024145 | 71.845 | 103 | 29 | 0 | 28 | 130 | 150 | 252 | 5.51e-47 | 155 |
| MS.gene029824.t1 | MTR_1g024850 | 74.286 | 70 | 18 | 0 | 10 | 79 | 14 | 83 | 1.20e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029824.t1 | AT2G37210 | 85.581 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 7.03e-136 | 380 |
| MS.gene029824.t1 | AT3G53450 | 86.058 | 208 | 28 | 1 | 1 | 207 | 1 | 208 | 2.68e-133 | 373 |
| MS.gene029824.t1 | AT2G28305 | 89.394 | 198 | 21 | 0 | 10 | 207 | 5 | 202 | 9.83e-131 | 367 |
| MS.gene029824.t1 | AT2G37210 | 76.569 | 239 | 30 | 3 | 1 | 214 | 1 | 238 | 4.81e-130 | 366 |
| MS.gene029824.t1 | AT2G28305 | 90.503 | 179 | 17 | 0 | 10 | 188 | 5 | 183 | 2.45e-119 | 337 |
| MS.gene029824.t1 | AT5G06300 | 78.218 | 202 | 44 | 0 | 10 | 211 | 6 | 207 | 5.38e-118 | 335 |
| MS.gene029824.t1 | AT5G03270 | 82.796 | 186 | 32 | 0 | 10 | 195 | 16 | 201 | 3.41e-112 | 319 |
| MS.gene029824.t1 | AT5G03270 | 83.425 | 181 | 30 | 0 | 10 | 190 | 16 | 196 | 5.33e-109 | 311 |
| MS.gene029824.t1 | AT4G35190 | 71.429 | 203 | 58 | 0 | 6 | 208 | 2 | 204 | 1.56e-108 | 311 |
| MS.gene029824.t1 | AT2G35990 | 69.072 | 194 | 60 | 0 | 10 | 203 | 6 | 199 | 2.88e-105 | 302 |
| MS.gene029824.t1 | AT4G35190 | 73.057 | 193 | 50 | 1 | 6 | 198 | 2 | 192 | 8.10e-103 | 296 |
| MS.gene029824.t1 | AT5G11950 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 1.96e-100 | 290 |
| MS.gene029824.t1 | AT5G11950 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 1.96e-100 | 290 |
| MS.gene029824.t1 | AT5G11950 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 1.96e-100 | 290 |
| MS.gene029824.t1 | AT2G28305 | 91.667 | 132 | 11 | 0 | 10 | 141 | 5 | 136 | 1.73e-86 | 253 |
| MS.gene029824.t1 | AT2G35990 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.74e-76 | 228 |
| MS.gene029824.t1 | AT2G35990 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.74e-76 | 228 |
| MS.gene029824.t1 | AT5G11950 | 64.103 | 156 | 56 | 0 | 57 | 212 | 1 | 156 | 7.71e-73 | 218 |
| MS.gene029824.t1 | AT5G26140 | 51.656 | 151 | 51 | 1 | 84 | 212 | 6 | 156 | 1.12e-46 | 152 |
| MS.gene029824.t1 | AT5G26140 | 50.365 | 137 | 46 | 1 | 98 | 212 | 1 | 137 | 1.84e-39 | 133 |
| MS.gene029824.t1 | AT5G26140 | 53.774 | 106 | 49 | 0 | 107 | 212 | 17 | 122 | 3.57e-35 | 121 |
Find 53 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATTGATCTAGTTTA+TGG | 0.173128 | 1.1:+48639908 | MS.gene029824:CDS |
| AAATTACATGCAGGTGGTTA+TGG | 0.290968 | 1.1:+48641700 | MS.gene029824:intron |
| CAAGATGCTGCCATTGAACT+TGG | 0.349737 | 1.1:+48639443 | MS.gene029824:CDS |
| ACAATTATGTGGCGCGCATT+TGG | 0.351381 | 1.1:-48641967 | None:intergenic |
| CTTGAGATGTCATACTCTTC+AGG | 0.376180 | 1.1:-48642193 | None:intergenic |
| AGGAGGAAGCATTGGTCTAA+TGG | 0.380070 | 1.1:+48639931 | MS.gene029824:CDS |
| AAAAGAGTTAGTGAAGAAAC+TGG | 0.405307 | 1.1:+48642005 | MS.gene029824:CDS |
| CATTGAACTTGGAAATGAAT+TGG | 0.407304 | 1.1:+48639454 | MS.gene029824:CDS |
| AATTACATGCAGGTGGTTAT+GGG | 0.415602 | 1.1:+48641701 | MS.gene029824:intron |
| GATGGTGGAAGACATGTCAT+AGG | 0.434367 | 1.1:+48639977 | MS.gene029824:CDS |
| CTCTCTAGGCATGAGTGTCT+TGG | 0.437074 | 1.1:-48640141 | None:intergenic |
| AAGCATTGGTCTAATGGGTT+CGG | 0.439439 | 1.1:+48639937 | MS.gene029824:CDS |
| GTCATAACCTGGGCTCAACT+TGG | 0.447889 | 1.1:+48641745 | MS.gene029824:CDS |
| GGAGGAAGCATTGGTCTAAT+GGG | 0.451429 | 1.1:+48639932 | MS.gene029824:CDS |
| TCTCTAGGCATGAGTGTCTT+GGG | 0.451553 | 1.1:-48640140 | None:intergenic |
| CAATTCATTTCCAAGTTCAA+TGG | 0.462751 | 1.1:-48639453 | None:intergenic |
| GTGGGACTAGTAAATGTTGA+TGG | 0.489170 | 1.1:+48641886 | MS.gene029824:CDS |
| ATTGATCTAGTTTATGGAGG+AGG | 0.513882 | 1.1:+48639914 | MS.gene029824:CDS |
| CAAATACAAATGGAGACAAA+TGG | 0.514050 | 1.1:+48639347 | None:intergenic |
| TAGCTCAGGCTAACCTGGTA+AGG | 0.520557 | 1.1:-48640681 | None:intergenic |
| TGACTTCAAGAAGCTCCTCT+AGG | 0.523303 | 1.1:-48641726 | None:intergenic |
| ACTTGGGATTCATGACAAAC+CGG | 0.526362 | 1.1:+48641762 | MS.gene029824:CDS |
| CATCGACAAAGCTGTGGAAG+AGG | 0.532010 | 1.1:+48641933 | MS.gene029824:CDS |
| AGCTTCTTGAAGTCATAACC+TGG | 0.532925 | 1.1:+48641734 | MS.gene029824:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.534440 | 1.1:+48639923 | MS.gene029824:CDS |
| GCGTTGCTTCGAAGTTGAGC+TGG | 0.538596 | 1.1:+48642146 | MS.gene029824:CDS |
| GTTTCACAAGCTGTTCATGA+TGG | 0.539577 | 1.1:+48639959 | MS.gene029824:CDS |
| TTTGCAGCTAACTGGTGAAA+CGG | 0.542234 | 1.1:+48640583 | MS.gene029824:intron |
| GAAGCAACGCCTTCGTGACA+AGG | 0.544836 | 1.1:-48642133 | None:intergenic |
| CTGTAGCAGATATGCATCAA+AGG | 0.549564 | 1.1:+48640621 | MS.gene029824:CDS |
| GACTTCAAGAAGCTCCTCTA+GGG | 0.553887 | 1.1:-48641725 | None:intergenic |
| TCATAACCTGGGCTCAACTT+GGG | 0.556522 | 1.1:+48641746 | MS.gene029824:CDS |
| CTGAAGAGTATGACATCTCA+AGG | 0.559781 | 1.1:+48642194 | MS.gene029824:CDS |
| TAAGAGTGTCAAAGTTCAAG+AGG | 0.560240 | 1.1:+48639375 | MS.gene029824:CDS |
| GCATCAAAGGAAGGCAGAGA+TGG | 0.563589 | 1.1:+48640634 | MS.gene029824:CDS |
| TTCGAAGTTGAGCTGGCAGA+TGG | 0.564883 | 1.1:+48642153 | MS.gene029824:CDS |
| TTCATTCATCGACAAAGCTG+TGG | 0.574795 | 1.1:+48641927 | MS.gene029824:CDS |
| AATATTGATCTAGTTTATGG+AGG | 0.578824 | 1.1:+48639911 | MS.gene029824:CDS |
| TCACAAGCTGTTCATGATGG+TGG | 0.582768 | 1.1:+48639962 | MS.gene029824:CDS |
| ATGAATCCCAAGTTGAGCCC+AGG | 0.585691 | 1.1:-48641752 | None:intergenic |
| ATCGACAAAGCTGTGGAAGA+GGG | 0.594245 | 1.1:+48641934 | MS.gene029824:CDS |
| GATGTCATACTCTTCAGGAT+AGG | 0.595686 | 1.1:-48642188 | None:intergenic |
| CAGCTAACTGGTGAAACGGT+GGG | 0.599390 | 1.1:+48640587 | MS.gene029824:intron |
| ATGGTGGAAGACATGTCATA+GGG | 0.603354 | 1.1:+48639978 | MS.gene029824:CDS |
| GCAGCTAACTGGTGAAACGG+TGG | 0.613685 | 1.1:+48640586 | MS.gene029824:intron |
| CAAGACACTCATGCCTAGAG+AGG | 0.614658 | 1.1:+48640142 | MS.gene029824:CDS |
| AAGAGTGTCAAAGTTCAAGA+GGG | 0.616352 | 1.1:+48639376 | MS.gene029824:CDS |
| AGCAGATATGCATCAAAGGA+AGG | 0.629113 | 1.1:+48640625 | MS.gene029824:CDS |
| GCTTCTTGAAGTCATAACCT+GGG | 0.658696 | 1.1:+48641735 | MS.gene029824:CDS |
| GATTATGTTCCTTGTCACGA+AGG | 0.661791 | 1.1:+48642124 | MS.gene029824:CDS |
| TAGGTGCTGATACAATTATG+TGG | 0.681813 | 1.1:-48641978 | None:intergenic |
| AGAGTTAGTGAAGAAACTGG+AGG | 0.710150 | 1.1:+48642008 | MS.gene029824:CDS |
| AGGTGGTTATGGGACCCTAG+AGG | 0.728214 | 1.1:+48641711 | MS.gene029824:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGAAAAAAACTTT+AGG | - | chr1.1:48639768-48639787 | None:intergenic | 10.0% |
| !! | TAAAAGTAATAATAAAGAAA+TGG | + | chr1.1:48640398-48640417 | MS.gene029824:intron | 10.0% |
| !! | TGAATTAGTTAATAATATTT+AGG | - | chr1.1:48641817-48641836 | None:intergenic | 10.0% |
| !!! | AAAATCTTATTTATTTTTTG+TGG | + | chr1.1:48639540-48639559 | MS.gene029824:intron | 10.0% |
| !! | ATGAAAAAAGTGAATAATAA+AGG | - | chr1.1:48640250-48640269 | None:intergenic | 15.0% |
| !! | TAACAAACTTAATTACTAAA+AGG | + | chr1.1:48640838-48640857 | MS.gene029824:intron | 15.0% |
| !!! | ATTAAGTTTGAAATGAAAAA+TGG | - | chr1.1:48639840-48639859 | None:intergenic | 15.0% |
| !!! | TGTTAAAGTTATTTTCTTTT+GGG | + | chr1.1:48640351-48640370 | MS.gene029824:intron | 15.0% |
| !!! | TTGTTAAAGTTATTTTCTTT+TGG | + | chr1.1:48640350-48640369 | MS.gene029824:intron | 15.0% |
| !!! | TTTTAGTAATTAAGTTTGTT+AGG | - | chr1.1:48640839-48640858 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCTCAAAAAAGA+AGG | - | chr1.1:48639524-48639543 | None:intergenic | 15.0% |
| !! | ACAAACCATTAAAATTGATT+GGG | - | chr1.1:48639878-48639897 | None:intergenic | 20.0% |
| !! | GAATTTAATGCAAAAAACAT+AGG | - | chr1.1:48641665-48641684 | None:intergenic | 20.0% |
| !! | TCATAAAAATGAAAACTTTG+AGG | - | chr1.1:48640017-48640036 | None:intergenic | 20.0% |
| !! | TTAACTTAAAATACAGAACA+GGG | - | chr1.1:48640305-48640324 | None:intergenic | 20.0% |
| !!! | AAATTTTAGCCAAATATGTT+AGG | - | chr1.1:48641082-48641101 | None:intergenic | 20.0% |
| !!! | AATTTTAGCCAAATATGTTA+GGG | - | chr1.1:48641081-48641100 | None:intergenic | 20.0% |
| !!! | AGAAATATTGATCTAGTTTA+TGG | + | chr1.1:48639908-48639927 | MS.gene029824:CDS | 20.0% |
| !!! | CTTATTTATTTTTTGTGGAT+GGG | + | chr1.1:48639545-48639564 | MS.gene029824:intron | 20.0% |
| !!! | TCTTATTTATTTTTTGTGGA+TGG | + | chr1.1:48639544-48639563 | MS.gene029824:intron | 20.0% |
| !!! | TTATTTATTTTTTGTGGATG+GGG | + | chr1.1:48639546-48639565 | MS.gene029824:intron | 20.0% |
| !!! | TTTTCAAAGACTTTTATTTC+TGG | + | chr1.1:48641299-48641318 | MS.gene029824:intron | 20.0% |
| ! | AAAAAAAATGATCTGACCAT+TGG | + | chr1.1:48641533-48641552 | MS.gene029824:intron | 25.0% |
| ! | AATCATTAATATTGTTGCCA+AGG | + | chr1.1:48640873-48640892 | MS.gene029824:intron | 25.0% |
| ! | AATGTCAAATCTAGTTAAAC+TGG | - | chr1.1:48641853-48641872 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAACAGTATGTA+AGG | - | chr1.1:48639504-48639523 | None:intergenic | 25.0% |
| ! | ATTCCTTTGTATATTTCAGT+TGG | + | chr1.1:48639612-48639631 | MS.gene029824:intron | 25.0% |
| ! | CACAAACCATTAAAATTGAT+TGG | - | chr1.1:48639879-48639898 | None:intergenic | 25.0% |
| ! | CTTAACTTAAAATACAGAAC+AGG | - | chr1.1:48640306-48640325 | None:intergenic | 25.0% |
| ! | TAGTCAAATAAATATGACAC+TGG | + | chr1.1:48640969-48640988 | MS.gene029824:intron | 25.0% |
| ! | TATTATGTTTGATTCATCAC+AGG | + | chr1.1:48642102-48642121 | MS.gene029824:intron | 25.0% |
| ! | TGGCAACAATATTAATGATT+AGG | - | chr1.1:48640873-48640892 | None:intergenic | 25.0% |
| ! | TTCCTTTGTATATTTCAGTT+GGG | + | chr1.1:48639613-48639632 | MS.gene029824:intron | 25.0% |
| !! | AATATTGATCTAGTTTATGG+AGG | + | chr1.1:48639911-48639930 | MS.gene029824:CDS | 25.0% |
| !! | ATACTTTAAAAAGCTGAGAA+AGG | - | chr1.1:48639817-48639836 | None:intergenic | 25.0% |
| !! | ATTTAGGTTCCTTAACAAAA+TGG | - | chr1.1:48641801-48641820 | None:intergenic | 25.0% |
| !! | CTTATCCCAATCAATTTTAA+TGG | + | chr1.1:48639870-48639889 | MS.gene029824:intron | 25.0% |
| !!! | AAAGTTATTTTCTTTTGGGT+AGG | + | chr1.1:48640355-48640374 | MS.gene029824:intron | 25.0% |
| !!! | TCAATTTTAATGGTTTGTGA+AGG | + | chr1.1:48639880-48639899 | MS.gene029824:intron | 25.0% |
| AAAAGAGTTAGTGAAGAAAC+TGG | + | chr1.1:48642005-48642024 | MS.gene029824:CDS | 30.0% | |
| AAAATACAGAACAGGGAAAT+AGG | - | chr1.1:48640298-48640317 | None:intergenic | 30.0% | |
| AAATGGTACAAGTCAATTAC+CGG | - | chr1.1:48641784-48641803 | None:intergenic | 30.0% | |
| AAATTAGTGACTGTTACAGA+AGG | + | chr1.1:48641348-48641367 | MS.gene029824:intron | 30.0% | |
| AACTTATGCAAATTACATGC+AGG | + | chr1.1:48641691-48641710 | MS.gene029824:intron | 30.0% | |
| AAGAATAGTACACCTTACTT+TGG | + | chr1.1:48640704-48640723 | MS.gene029824:intron | 30.0% | |
| AAGCATTAAAGACTGAGATA+TGG | - | chr1.1:48640806-48640825 | None:intergenic | 30.0% | |
| ACAATATTAATGATTAGGCG+TGG | - | chr1.1:48640868-48640887 | None:intergenic | 30.0% | |
| ACAGTGTATCAAAATTACCT+TGG | - | chr1.1:48640893-48640912 | None:intergenic | 30.0% | |
| AGGAAAGTAGATGCAAAAAA+TGG | - | chr1.1:48641150-48641169 | None:intergenic | 30.0% | |
| ATCAAAACCATGAGTAAGTT+TGG | - | chr1.1:48641194-48641213 | None:intergenic | 30.0% | |
| CAATTCATTTCCAAGTTCAA+TGG | - | chr1.1:48639456-48639475 | None:intergenic | 30.0% | |
| CAGATTCCCTACAATAATTA+TGG | - | chr1.1:48641593-48641612 | None:intergenic | 30.0% | |
| CATTGAACTTGGAAATGAAT+TGG | + | chr1.1:48639454-48639473 | MS.gene029824:CDS | 30.0% | |
| CTTAAGGTCATCTAATAAAC+TGG | - | chr1.1:48641630-48641649 | None:intergenic | 30.0% | |
| GTGCATTATGTAATCAATCT+CGG | + | chr1.1:48641465-48641484 | MS.gene029824:intron | 30.0% | |
| GTTGTTCGATTTCAAATCAA+TGG | - | chr1.1:48641491-48641510 | None:intergenic | 30.0% | |
| TCAAGCACAATAGACTATTA+TGG | - | chr1.1:48640049-48640068 | None:intergenic | 30.0% | |
| TCTCTAATCATCATAGCATT+AGG | - | chr1.1:48641018-48641037 | None:intergenic | 30.0% | |
| TGTGTGCCATAATTATTGTA+GGG | + | chr1.1:48641584-48641603 | MS.gene029824:intron | 30.0% | |
| TTATTGTAGGGAATCTGTTT+CGG | + | chr1.1:48641596-48641615 | MS.gene029824:intron | 30.0% | |
| ! | TTCACTAACTCTTTTGATGT+AGG | - | chr1.1:48642000-48642019 | None:intergenic | 30.0% |
| ! | TTTTGTACCAAACTTACTCA+TGG | + | chr1.1:48641184-48641203 | MS.gene029824:intron | 30.0% |
| !! | TGACTTGTACCATTTTGTTA+AGG | + | chr1.1:48641789-48641808 | MS.gene029824:intron | 30.0% |
| !!! | ACTCTTTTGTTTTACTTCAG+TGG | + | chr1.1:48640429-48640448 | MS.gene029824:intron | 30.0% |
| !!! | CTCATGGTTTTGATATAGAA+AGG | + | chr1.1:48641200-48641219 | MS.gene029824:intron | 30.0% |
| !!! | TTTTTTGCATCTACTTTCCT+TGG | + | chr1.1:48641150-48641169 | MS.gene029824:intron | 30.0% |
| AAAGACTGAGATATGGTCAA+TGG | - | chr1.1:48640799-48640818 | None:intergenic | 35.0% | |
| AAATTACATGCAGGTGGTTA+TGG | + | chr1.1:48641700-48641719 | MS.gene029824:intron | 35.0% | |
| AATTACATGCAGGTGGTTAT+GGG | + | chr1.1:48641701-48641720 | MS.gene029824:intron | 35.0% | |
| ACAAAAACGTCATGATTCCA+AGG | - | chr1.1:48641170-48641189 | None:intergenic | 35.0% | |
| ACTTGTCATTCACTCTTTCT+TGG | + | chr1.1:48641388-48641407 | MS.gene029824:intron | 35.0% | |
| AGGATCCAATGGATAAGAAA+TGG | - | chr1.1:48640562-48640581 | None:intergenic | 35.0% | |
| CACTATTTCATGACATGTAC+AGG | - | chr1.1:48641275-48641294 | None:intergenic | 35.0% | |
| CTGTGTGCCATAATTATTGT+AGG | + | chr1.1:48641583-48641602 | MS.gene029824:intron | 35.0% | |
| CTGTTCCATTTCTTATCCAT+TGG | + | chr1.1:48640554-48640573 | MS.gene029824:intron | 35.0% | |
| CTTGTCATTCACTCTTTCTT+GGG | + | chr1.1:48641389-48641408 | MS.gene029824:intron | 35.0% | |
| GACAAATAAACCAGTGTCAA+TGG | - | chr1.1:48640094-48640113 | None:intergenic | 35.0% | |
| GACCCAACTGAAATATACAA+AGG | - | chr1.1:48639618-48639637 | None:intergenic | 35.0% | |
| TCTGAAAAACTATGGTTCTC+TGG | + | chr1.1:48641116-48641135 | MS.gene029824:intron | 35.0% | |
| TCTGTAATGCAACCAAAGTA+AGG | - | chr1.1:48640719-48640738 | None:intergenic | 35.0% | |
| TGCAAAAAACATAGGAGAAC+AGG | - | chr1.1:48641657-48641676 | None:intergenic | 35.0% | |
| TTATGCAAATTACATGCAGG+TGG | + | chr1.1:48641694-48641713 | MS.gene029824:intron | 35.0% | |
| ! | ATTGATCTAGTTTATGGAGG+AGG | + | chr1.1:48639914-48639933 | MS.gene029824:CDS | 35.0% |
| ! | GCTTTGACTCTGAAAAACTA+TGG | + | chr1.1:48641108-48641127 | MS.gene029824:intron | 35.0% |
| !! | AAGAGTGTCAAAGTTCAAGA+GGG | + | chr1.1:48639376-48639395 | MS.gene029824:CDS | 35.0% |
| !! | TAAGAGTGTCAAAGTTCAAG+AGG | + | chr1.1:48639375-48639394 | MS.gene029824:CDS | 35.0% |
| !! | TAGGTGCTGATACAATTATG+TGG | - | chr1.1:48641981-48642000 | None:intergenic | 35.0% |
| !! | TGATAACTACTTTTCTTGCC+AGG | - | chr1.1:48639425-48639444 | None:intergenic | 35.0% |
| ACTTGGGATTCATGACAAAC+CGG | + | chr1.1:48641762-48641781 | MS.gene029824:CDS | 40.0% | |
| AGAGAGTGACTCTTCAAAAC+TGG | + | chr1.1:48641033-48641052 | MS.gene029824:intron | 40.0% | |
| AGAGTTAGTGAAGAAACTGG+AGG | + | chr1.1:48642008-48642027 | MS.gene029824:CDS | 40.0% | |
| AGCAGATATGCATCAAAGGA+AGG | + | chr1.1:48640625-48640644 | MS.gene029824:CDS | 40.0% | |
| AGCTTCTTGAAGTCATAACC+TGG | + | chr1.1:48641734-48641753 | MS.gene029824:CDS | 40.0% | |
| ATCTCTTTGTCCATTGACAC+TGG | + | chr1.1:48640081-48640100 | MS.gene029824:intron | 40.0% | |
| CTGTAGCAGATATGCATCAA+AGG | + | chr1.1:48640621-48640640 | MS.gene029824:CDS | 40.0% | |
| CTTGAGATGTCATACTCTTC+AGG | - | chr1.1:48642196-48642215 | None:intergenic | 40.0% | |
| GATGTCATACTCTTCAGGAT+AGG | - | chr1.1:48642191-48642210 | None:intergenic | 40.0% | |
| GATTATGTTCCTTGTCACGA+AGG | + | chr1.1:48642124-48642143 | MS.gene029824:CDS | 40.0% | |
| GCTTCTTGAAGTCATAACCT+GGG | + | chr1.1:48641735-48641754 | MS.gene029824:CDS | 40.0% | |
| GGTGATAAGGGGTCTTAATT+TGG | + | chr1.1:48641443-48641462 | MS.gene029824:intron | 40.0% | |
| GTTTCACAAGCTGTTCATGA+TGG | + | chr1.1:48639959-48639978 | MS.gene029824:CDS | 40.0% | |
| TAGCTGCAAAAAGGATCCAA+TGG | - | chr1.1:48640573-48640592 | None:intergenic | 40.0% | |
| TAGGAGAACAGGAACACTTA+AGG | - | chr1.1:48641646-48641665 | None:intergenic | 40.0% | |
| TTCACCAGTTAGCTGCAAAA+AGG | - | chr1.1:48640582-48640601 | None:intergenic | 40.0% | |
| TTCAGTGGCTTATAATGTGC+TGG | + | chr1.1:48640444-48640463 | MS.gene029824:intron | 40.0% | |
| TTCATTCATCGACAAAGCTG+TGG | + | chr1.1:48641927-48641946 | MS.gene029824:CDS | 40.0% | |
| TTTGCAGCTAACTGGTGAAA+CGG | + | chr1.1:48640583-48640602 | MS.gene029824:intron | 40.0% | |
| ! | AAGAGGGTTTGTGTCTTTTG+TGG | + | chr1.1:48639392-48639411 | MS.gene029824:CDS | 40.0% |
| ! | ATGGTGGAAGACATGTCATA+GGG | + | chr1.1:48639978-48639997 | MS.gene029824:CDS | 40.0% |
| ! | CTGAAGAGTATGACATCTCA+AGG | + | chr1.1:48642194-48642213 | MS.gene029824:CDS | 40.0% |
| ! | CTTTTCTCACATACCTCTCT+AGG | - | chr1.1:48640158-48640177 | None:intergenic | 40.0% |
| ! | GATGCTTTTATTGCCTTACC+AGG | + | chr1.1:48640668-48640687 | MS.gene029824:CDS | 40.0% |
| ! | GGTGTACTATTCTTTAGCTC+AGG | - | chr1.1:48640698-48640717 | None:intergenic | 40.0% |
| ! | GTGGGACTAGTAAATGTTGA+TGG | + | chr1.1:48641886-48641905 | MS.gene029824:CDS | 40.0% |
| ! | TTTTGTGGATGGGGTGAAAA+TGG | + | chr1.1:48639555-48639574 | MS.gene029824:intron | 40.0% |
| !! | AAGCATTGGTCTAATGGGTT+CGG | + | chr1.1:48639937-48639956 | MS.gene029824:CDS | 40.0% |
| !! | GACCATTGGTTTAGATCGAA+GGG | + | chr1.1:48641547-48641566 | MS.gene029824:intron | 40.0% |
| !! | TGACCATTGGTTTAGATCGA+AGG | + | chr1.1:48641546-48641565 | MS.gene029824:intron | 40.0% |
| AAGAGAGAGAGGGTGATAAG+GGG | + | chr1.1:48641432-48641451 | MS.gene029824:intron | 45.0% | |
| AAGATAGAGGGAAGAGAGAG+AGG | + | chr1.1:48641421-48641440 | MS.gene029824:intron | 45.0% | |
| ACAATTATGTGGCGCGCATT+TGG | - | chr1.1:48641970-48641989 | None:intergenic | 45.0% | |
| AGATAGAGGGAAGAGAGAGA+GGG | + | chr1.1:48641422-48641441 | MS.gene029824:intron | 45.0% | |
| AGTGACTGTTACAGAAGGCA+AGG | + | chr1.1:48641353-48641372 | MS.gene029824:intron | 45.0% | |
| ATCGACAAAGCTGTGGAAGA+GGG | + | chr1.1:48641934-48641953 | MS.gene029824:CDS | 45.0% | |
| CAAGATGCTGCCATTGAACT+TGG | + | chr1.1:48639443-48639462 | MS.gene029824:CDS | 45.0% | |
| CTCTTCCCTCTATCTTGCAA+GGG | - | chr1.1:48641417-48641436 | None:intergenic | 45.0% | |
| GAAGAGAGAGAGGGTGATAA+GGG | + | chr1.1:48641431-48641450 | MS.gene029824:intron | 45.0% | |
| GACCCTTCGATCTAAACCAA+TGG | - | chr1.1:48641552-48641571 | None:intergenic | 45.0% | |
| GACTTCAAGAAGCTCCTCTA+GGG | - | chr1.1:48641728-48641747 | None:intergenic | 45.0% | |
| GCCAAATATGTTAGGGTCTC+AGG | - | chr1.1:48641074-48641093 | None:intergenic | 45.0% | |
| GCCTGAGACCCTAACATATT+TGG | + | chr1.1:48641070-48641089 | MS.gene029824:intron | 45.0% | |
| TCACAAGCTGTTCATGATGG+TGG | + | chr1.1:48639962-48639981 | MS.gene029824:CDS | 45.0% | |
| TCATAACCTGGGCTCAACTT+GGG | + | chr1.1:48641746-48641765 | MS.gene029824:CDS | 45.0% | |
| TCTCTAGGCATGAGTGTCTT+GGG | - | chr1.1:48640143-48640162 | None:intergenic | 45.0% | |
| TCTCTTCCCTCTATCTTGCA+AGG | - | chr1.1:48641418-48641437 | None:intergenic | 45.0% | |
| TGACTTCAAGAAGCTCCTCT+AGG | - | chr1.1:48641729-48641748 | None:intergenic | 45.0% | |
| TTTGACATTCCACAACTCGC+AGG | + | chr1.1:48641864-48641883 | MS.gene029824:intron | 45.0% | |
| ! | GGATCCTTTTTGCAGCTAAC+TGG | + | chr1.1:48640575-48640594 | MS.gene029824:intron | 45.0% |
| ! | GTCTTTTGTGGAAGTAGTCC+TGG | + | chr1.1:48639404-48639423 | MS.gene029824:CDS | 45.0% |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | + | chr1.1:48639923-48639942 | MS.gene029824:CDS | 45.0% |
| ! | TTCTTTAGCTCAGGCTAACC+TGG | - | chr1.1:48640689-48640708 | None:intergenic | 45.0% |
| !! | AGGAGGAAGCATTGGTCTAA+TGG | + | chr1.1:48639931-48639950 | MS.gene029824:CDS | 45.0% |
| !! | GATGGTGGAAGACATGTCAT+AGG | + | chr1.1:48639977-48639996 | MS.gene029824:CDS | 45.0% |
| !! | GGAGGAAGCATTGGTCTAAT+GGG | + | chr1.1:48639932-48639951 | MS.gene029824:CDS | 45.0% |
| !!! | AATATAAATTTTTTGTTTTT+TGG | + | chr1.1:48639705-48639724 | MS.gene029824:intron | 5.0% |
| !!! | ATTTTTTTTTTTTATATCTA+TGG | + | chr1.1:48639784-48639803 | MS.gene029824:intron | 5.0% |
| ACATTCCACAACTCGCAGGT+GGG | + | chr1.1:48641868-48641887 | MS.gene029824:intron | 50.0% | |
| CAAGACACTCATGCCTAGAG+AGG | + | chr1.1:48640142-48640161 | MS.gene029824:CDS | 50.0% | |
| CAGCTAACTGGTGAAACGGT+GGG | + | chr1.1:48640587-48640606 | MS.gene029824:intron | 50.0% | |
| CATCGACAAAGCTGTGGAAG+AGG | + | chr1.1:48641933-48641952 | MS.gene029824:CDS | 50.0% | |
| CTCTCTAGGCATGAGTGTCT+TGG | - | chr1.1:48640144-48640163 | None:intergenic | 50.0% | |
| GCATCAAAGGAAGGCAGAGA+TGG | + | chr1.1:48640634-48640653 | MS.gene029824:CDS | 50.0% | |
| GGAAGAGAGAGAGGGTGATA+AGG | + | chr1.1:48641430-48641449 | MS.gene029824:intron | 50.0% | |
| GGGATCCCTTGCAAGATAGA+GGG | + | chr1.1:48641409-48641428 | MS.gene029824:intron | 50.0% | |
| GTCATAACCTGGGCTCAACT+TGG | + | chr1.1:48641745-48641764 | MS.gene029824:CDS | 50.0% | |
| TAGCTCAGGCTAACCTGGTA+AGG | - | chr1.1:48640684-48640703 | None:intergenic | 50.0% | |
| TGGGATCCCTTGCAAGATAG+AGG | + | chr1.1:48641408-48641427 | MS.gene029824:intron | 50.0% | |
| TTAGGGTCTCAGGCAAAGTC+AGG | - | chr1.1:48641064-48641083 | None:intergenic | 50.0% | |
| TTCGAAGTTGAGCTGGCAGA+TGG | + | chr1.1:48642153-48642172 | MS.gene029824:CDS | 50.0% | |
| ! | ATGAATCCCAAGTTGAGCCC+AGG | - | chr1.1:48641755-48641774 | None:intergenic | 50.0% |
| AGGTGGTTATGGGACCCTAG+AGG | + | chr1.1:48641711-48641730 | MS.gene029824:intron | 55.0% | |
| GAAGCAACGCCTTCGTGACA+AGG | - | chr1.1:48642136-48642155 | None:intergenic | 55.0% | |
| GACATTCCACAACTCGCAGG+TGG | + | chr1.1:48641867-48641886 | MS.gene029824:intron | 55.0% | |
| GCAGCTAACTGGTGAAACGG+TGG | + | chr1.1:48640586-48640605 | MS.gene029824:intron | 55.0% | |
| GCGTTGCTTCGAAGTTGAGC+TGG | + | chr1.1:48642146-48642165 | MS.gene029824:CDS | 55.0% | |
| CTAGTCCCACCTGCGAGTTG+TGG | - | chr1.1:48641876-48641895 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48639356 | 48642219 | 48639356 | ID=MS.gene029824 |
| chr1.1 | mRNA | 48639356 | 48642219 | 48639356 | ID=MS.gene029824.t1;Parent=MS.gene029824 |
| chr1.1 | exon | 48639356 | 48639475 | 48639356 | ID=MS.gene029824.t1.exon1;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48639356 | 48639475 | 48639356 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| chr1.1 | exon | 48639902 | 48639999 | 48639902 | ID=MS.gene029824.t1.exon2;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48639902 | 48639999 | 48639902 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| chr1.1 | exon | 48640133 | 48640163 | 48640133 | ID=MS.gene029824.t1.exon3;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48640133 | 48640163 | 48640133 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| chr1.1 | exon | 48640590 | 48640689 | 48640590 | ID=MS.gene029824.t1.exon4;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48640590 | 48640689 | 48640590 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| chr1.1 | exon | 48641713 | 48641783 | 48641713 | ID=MS.gene029824.t1.exon5;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48641713 | 48641783 | 48641713 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| chr1.1 | exon | 48641886 | 48642029 | 48641886 | ID=MS.gene029824.t1.exon6;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48641886 | 48642029 | 48641886 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| chr1.1 | exon | 48642124 | 48642219 | 48642124 | ID=MS.gene029824.t1.exon7;Parent=MS.gene029824.t1 |
| chr1.1 | CDS | 48642124 | 48642219 | 48642124 | ID=cds.MS.gene029824.t1;Parent=MS.gene029824.t1 |
| Gene Sequence |
| Protein sequence |
