Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007521.t1 | XP_013443105.1 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007521.t1 | Q8L8B8 | 87.0 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 1.9e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007521.t1 | A0A072TU87 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31266 | MS.gene007521 | PPI |
| MS.gene034799 | MS.gene007521 | PPI |
| MS.gene050128 | MS.gene007521 | PPI |
| MS.gene007521 | MS.gene029824 | PPI |
| MS.gene007521 | MS.gene41079 | PPI |
| MS.gene007521 | MS.gene016180 | PPI |
| MS.gene007521 | MS.gene007426 | PPI |
| MS.gene007521 | MS.gene016181 | PPI |
| MS.gene08753 | MS.gene007521 | PPI |
| MS.gene08691 | MS.gene007521 | PPI |
| MS.gene33028 | MS.gene007521 | PPI |
| MS.gene007521 | MS.gene52386 | PPI |
| MS.gene24610 | MS.gene007521 | PPI |
| MS.gene051577 | MS.gene007521 | PPI |
| MS.gene007521 | MS.gene028695 | PPI |
| MS.gene007521 | MS.gene20068 | PPI |
| MS.gene007521 | MS.gene055648 | PPI |
| MS.gene22428 | MS.gene007521 | PPI |
| MS.gene007681 | MS.gene007521 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007521.t1 | MTR_7g101290 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene007521.t1 | MTR_0041s0100 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene007521.t1 | MTR_1g064260 | 94.444 | 216 | 12 | 0 | 5 | 220 | 4 | 219 | 8.28e-156 | 430 |
| MS.gene007521.t1 | MTR_2g094790 | 85.854 | 205 | 29 | 0 | 4 | 208 | 3 | 207 | 5.52e-132 | 370 |
| MS.gene007521.t1 | MTR_4g058740 | 89.119 | 193 | 21 | 0 | 13 | 205 | 12 | 204 | 8.76e-128 | 359 |
| MS.gene007521.t1 | MTR_3g113710 | 77.143 | 210 | 48 | 0 | 11 | 220 | 12 | 221 | 3.99e-122 | 345 |
| MS.gene007521.t1 | MTR_1g064260 | 96.319 | 163 | 6 | 0 | 58 | 220 | 1 | 163 | 1.81e-116 | 329 |
| MS.gene007521.t1 | MTR_1g057020 | 73.206 | 209 | 54 | 1 | 11 | 219 | 6 | 212 | 2.79e-113 | 323 |
| MS.gene007521.t1 | MTR_3g113710 | 78.771 | 179 | 38 | 0 | 11 | 189 | 12 | 190 | 8.71e-106 | 305 |
| MS.gene007521.t1 | MTR_1g015830 | 67.327 | 202 | 66 | 0 | 12 | 213 | 7 | 208 | 7.37e-103 | 296 |
| MS.gene007521.t1 | MTR_3g113710 | 78.767 | 146 | 31 | 0 | 75 | 220 | 10 | 155 | 3.16e-82 | 242 |
| MS.gene007521.t1 | MTR_1g015830 | 67.308 | 156 | 51 | 0 | 58 | 213 | 1 | 156 | 1.09e-75 | 226 |
| MS.gene007521.t1 | MTR_1g024145 | 78.723 | 94 | 20 | 0 | 38 | 131 | 159 | 252 | 1.50e-47 | 157 |
| MS.gene007521.t1 | MTR_1g024850 | 75.714 | 70 | 17 | 0 | 11 | 80 | 14 | 83 | 3.30e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007521.t1 | AT2G37210 | 87.019 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 2.34e-136 | 381 |
| MS.gene007521.t1 | AT3G53450 | 86.058 | 208 | 29 | 0 | 1 | 208 | 1 | 208 | 2.98e-134 | 376 |
| MS.gene007521.t1 | AT2G28305 | 85.238 | 210 | 30 | 1 | 11 | 220 | 5 | 213 | 1.57e-130 | 366 |
| MS.gene007521.t1 | AT2G37210 | 77.586 | 232 | 28 | 1 | 1 | 208 | 1 | 232 | 2.30e-130 | 367 |
| MS.gene007521.t1 | AT2G28305 | 90.503 | 179 | 17 | 0 | 11 | 189 | 5 | 183 | 7.72e-120 | 338 |
| MS.gene007521.t1 | AT5G06300 | 79.208 | 202 | 42 | 0 | 11 | 212 | 6 | 207 | 2.38e-119 | 338 |
| MS.gene007521.t1 | AT5G03270 | 83.871 | 186 | 30 | 0 | 11 | 196 | 16 | 201 | 3.47e-113 | 322 |
| MS.gene007521.t1 | AT4G35190 | 71.921 | 203 | 57 | 0 | 7 | 209 | 2 | 204 | 7.23e-110 | 315 |
| MS.gene007521.t1 | AT5G03270 | 83.978 | 181 | 29 | 0 | 11 | 191 | 16 | 196 | 1.98e-109 | 312 |
| MS.gene007521.t1 | AT2G35990 | 72.165 | 194 | 54 | 0 | 11 | 204 | 6 | 199 | 2.42e-108 | 310 |
| MS.gene007521.t1 | AT4G35190 | 73.575 | 193 | 49 | 1 | 7 | 199 | 2 | 192 | 8.53e-104 | 298 |
| MS.gene007521.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene007521.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene007521.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene007521.t1 | AT2G28305 | 90.909 | 132 | 12 | 0 | 11 | 142 | 5 | 136 | 4.23e-86 | 252 |
| MS.gene007521.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene007521.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene007521.t1 | AT5G11950 | 66.026 | 156 | 53 | 0 | 58 | 213 | 1 | 156 | 7.11e-75 | 224 |
| MS.gene007521.t1 | AT5G26140 | 52.318 | 151 | 50 | 1 | 85 | 213 | 6 | 156 | 2.22e-47 | 154 |
| MS.gene007521.t1 | AT5G26140 | 51.095 | 137 | 45 | 1 | 99 | 213 | 1 | 137 | 4.90e-40 | 134 |
| MS.gene007521.t1 | AT5G26140 | 54.717 | 106 | 48 | 0 | 108 | 213 | 17 | 122 | 8.55e-36 | 123 |
Find 51 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATTGATCTTGTTTA+TGG | 0.168735 | 7.4:+9185625 | MS.gene007521:CDS |
| TTAACTTATGCAGGTGGATA+TGG | 0.277547 | 7.4:+9187676 | MS.gene007521:intron |
| CAATTCATTGCCAAGGTTCA+TGG | 0.335336 | 7.4:-9184956 | None:intergenic |
| ACAATTATGTGACGAGCATT+TGG | 0.366388 | 7.4:-9187942 | None:intergenic |
| ACTCACGCAATGGTGAAATA+AGG | 0.394030 | 7.4:+9184860 | MS.gene007521:CDS |
| GATGGCGGTCGCCATGTCAT+TGG | 0.405743 | 7.4:+9185694 | MS.gene007521:CDS |
| GTTGGATTAGTAAATGTTGA+TGG | 0.409542 | 7.4:+9187861 | MS.gene007521:CDS |
| CTCTCGAGGCATGAGTGTCT+TGG | 0.437050 | 7.4:-9185925 | None:intergenic |
| ATGGCGGTCGCCATGTCATT+GGG | 0.438706 | 7.4:+9185695 | MS.gene007521:CDS |
| ATTGACAAAGCTGTGGAAGA+AGG | 0.461566 | 7.4:+9187909 | MS.gene007521:CDS |
| TCTCGAGGCATGAGTGTCTT+GGG | 0.468747 | 7.4:-9185924 | None:intergenic |
| CATGAACCTTGGCAATGAAT+TGG | 0.469550 | 7.4:+9184957 | MS.gene007521:CDS |
| TTCCATCTGCCAGCTCAACT+TGG | 0.470523 | 7.4:-9188485 | None:intergenic |
| TTGAGATGTCATAATCTTGA+GGG | 0.471297 | 7.4:-9188522 | None:intergenic |
| GTCATAACATGGGCTCAACT+TGG | 0.475221 | 7.4:+9187721 | MS.gene007521:CDS |
| ATTGATCTTGTTTATGGAGG+AGG | 0.482065 | 7.4:+9185631 | MS.gene007521:CDS |
| CAAGGTTCATGGCAGCATCT+TGG | 0.485744 | 7.4:-9184945 | None:intergenic |
| AAAAGAGTTAGTTAAGAAGT+TGG | 0.487121 | 7.4:+9187980 | MS.gene007521:CDS |
| AGGAGGAAGCATTGGTCTCA+TGG | 0.491447 | 7.4:+9185648 | MS.gene007521:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.504128 | 7.4:+9185640 | MS.gene007521:CDS |
| GTTTCTCAAGCTGTTCATGA+TGG | 0.505960 | 7.4:+9185676 | MS.gene007521:CDS |
| GTGTTGCTTCCAAGTTGAGC+TGG | 0.509075 | 7.4:+9188476 | MS.gene007521:CDS |
| TGCTAAGTGCTAACCTGGTA+AGG | 0.510169 | 7.4:-9186383 | None:intergenic |
| AGAGTTAGTTAAGAAGTTGG+AGG | 0.516344 | 7.4:+9187983 | MS.gene007521:CDS |
| TTGACAAAGCTGTGGAAGAA+GGG | 0.531943 | 7.4:+9187910 | MS.gene007521:CDS |
| AACATTGATCTTGTTTATGG+AGG | 0.533518 | 7.4:+9185628 | MS.gene007521:CDS |
| CAAGATGCTGCCATGAACCT+TGG | 0.535202 | 7.4:+9184946 | MS.gene007521:CDS |
| CTCAAGATTATGACATCTCA+AGG | 0.546895 | 7.4:+9188524 | MS.gene007521:CDS |
| GCATCAAAGGAAAGCTGAGA+TGG | 0.549979 | 7.4:+9186336 | MS.gene007521:CDS |
| GGAGGAAGCATTGGTCTCAT+GGG | 0.550392 | 7.4:+9185649 | MS.gene007521:CDS |
| TACATACCAATTCATTGCCA+AGG | 0.561261 | 7.4:-9184963 | None:intergenic |
| TTCCAAGTTGAGCTGGCAGA+TGG | 0.564883 | 7.4:+9188483 | MS.gene007521:CDS |
| CAGCTAACTGGTGAAACAGT+AGG | 0.567165 | 7.4:+9186289 | MS.gene007521:intron |
| CTGTTGCTGATATGCATCAA+AGG | 0.573128 | 7.4:+9186323 | MS.gene007521:CDS |
| CTTGAGATGTCATAATCTTG+AGG | 0.576949 | 7.4:-9188523 | None:intergenic |
| TAACAAATGGACTCACGCAA+TGG | 0.580220 | 7.4:+9184850 | None:intergenic |
| GAAGCAACACCCTCATGACA+TGG | 0.600653 | 7.4:-9188463 | None:intergenic |
| AACTTCTTGAAGTCATAACA+TGG | 0.604120 | 7.4:+9187710 | MS.gene007521:CDS |
| ACTTGGAATTCATGACAAGC+CGG | 0.616968 | 7.4:+9187738 | MS.gene007521:CDS |
| GGAGTATGTTCCATGTCATG+AGG | 0.617100 | 7.4:+9188453 | MS.gene007521:intron |
| GTTCATGGCAGCATCTTGGT+AGG | 0.620771 | 7.4:-9184941 | None:intergenic |
| TCTCAAGCTGTTCATGATGG+CGG | 0.622957 | 7.4:+9185679 | MS.gene007521:CDS |
| TACTAGACAAATACCTCTCG+AGG | 0.623010 | 7.4:-9185939 | None:intergenic |
| TGAAACAGTAGGAGAAGTGA+AGG | 0.624185 | 7.4:+9186300 | MS.gene007521:CDS |
| CAAGACACTCATGCCTCGAG+AGG | 0.636692 | 7.4:+9185926 | MS.gene007521:CDS |
| GTCATTCATTGACAAAGCTG+TGG | 0.639783 | 7.4:+9187902 | MS.gene007521:CDS |
| GAGTATGTTCCATGTCATGA+GGG | 0.646303 | 7.4:+9188454 | MS.gene007521:CDS |
| GTGTTATATACCCAATGACA+TGG | 0.655296 | 7.4:-9185705 | None:intergenic |
| AGGTGGATATGGAACTCTAG+AGG | 0.671132 | 7.4:+9187687 | MS.gene007521:intron |
| TTTGTCAATGAATGACAACA+AGG | 0.686987 | 7.4:-9187895 | None:intergenic |
| ACTTCTTGAAGTCATAACAT+GGG | 0.690032 | 7.4:+9187711 | MS.gene007521:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATATGAAAATGT+CGG | - | chr7.4:9186506-9186525 | None:intergenic | 10.0% |
| !! | TTAATTAATAAGTATACAAT+TGG | - | chr7.4:9188377-9188396 | None:intergenic | 10.0% |
| !! | TTTAAAAATGAAAGATAAAA+AGG | - | chr7.4:9186647-9186666 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTTTGACAA+TGG | - | chr7.4:9188096-9188115 | None:intergenic | 10.0% |
| !!! | TCCAATATTTTATATTTTAA+GGG | - | chr7.4:9187002-9187021 | None:intergenic | 10.0% |
| !! | ATACTCAAAATAAATTACTT+AGG | - | chr7.4:9187276-9187295 | None:intergenic | 15.0% |
| !! | TCCCTTAAAATATAAAATAT+TGG | + | chr7.4:9186998-9187017 | MS.gene007521:intron | 15.0% |
| !! | TTATCATTTATGAATTAATC+TGG | + | chr7.4:9187817-9187836 | MS.gene007521:intron | 15.0% |
| !!! | AAGATTTGAAATTAATTTAC+AGG | + | chr7.4:9188432-9188451 | MS.gene007521:intron | 15.0% |
| !!! | ATTTTATATTTTAAGGGATA+AGG | - | chr7.4:9186996-9187015 | None:intergenic | 15.0% |
| !!! | GTCCAATATTTTATATTTTA+AGG | - | chr7.4:9187003-9187022 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTGTTTACT+TGG | + | chr7.4:9186517-9186536 | MS.gene007521:intron | 15.0% |
| !!! | TTTTAAAACAACATGATTTA+AGG | - | chr7.4:9186803-9186822 | None:intergenic | 15.0% |
| !! | ACCTTAATATGAAACAAAAA+TGG | - | chr7.4:9185297-9185316 | None:intergenic | 20.0% |
| !! | TACAATTCAGATTATAATCA+TGG | + | chr7.4:9187614-9187633 | MS.gene007521:intron | 20.0% |
| !! | TCCAATGTTTATGATTAATA+AGG | + | chr7.4:9186914-9186933 | MS.gene007521:intron | 20.0% |
| !! | TCCTTATTAATCATAAACAT+TGG | - | chr7.4:9186918-9186937 | None:intergenic | 20.0% |
| !! | TGTTAATTAATGAGTAAAAG+AGG | - | chr7.4:9185864-9185883 | None:intergenic | 20.0% |
| !! | TTATATACAAATCATTCCTT+GGG | - | chr7.4:9187385-9187404 | None:intergenic | 20.0% |
| !! | TTTAATAACAGAAGGTAAAA+GGG | - | chr7.4:9186122-9186141 | None:intergenic | 20.0% |
| !! | TTTATATACAAATCATTCCT+TGG | - | chr7.4:9187386-9187405 | None:intergenic | 20.0% |
| !!! | AAAAATGTTGTTTATGTCTT+TGG | + | chr7.4:9186251-9186270 | MS.gene007521:intron | 20.0% |
| !!! | AACACTTTGATTAATGTTTT+TGG | - | chr7.4:9185257-9185276 | None:intergenic | 20.0% |
| !!! | ACACTTTGATTAATGTTTTT+GGG | - | chr7.4:9185256-9185275 | None:intergenic | 20.0% |
| !!! | GAAACAATTGTTTTTTTCAA+AGG | - | chr7.4:9186482-9186501 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr7.4:9185976-9185995 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr7.4:9186073-9186092 | MS.gene007521:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr7.4:9185981-9186000 | MS.gene007521:intron | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr7.4:9186068-9186087 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTTTCATATTA+AGG | + | chr7.4:9185293-9185312 | MS.gene007521:intron | 20.0% |
| !!! | TTGTTTTTGTTGATTTGATT+TGG | + | chr7.4:9186683-9186702 | MS.gene007521:intron | 20.0% |
| ! | AAAAGAGTTAGTTAAGAAGT+TGG | + | chr7.4:9187980-9187999 | MS.gene007521:CDS | 25.0% |
| ! | AACTCACTTATTGAAAAATG+TGG | - | chr7.4:9185057-9185076 | None:intergenic | 25.0% |
| ! | AAGGTTATATACTCTGTATT+TGG | + | chr7.4:9185186-9185205 | MS.gene007521:intron | 25.0% |
| ! | ACTATACTAACTAAATACCA+TGG | + | chr7.4:9187469-9187488 | MS.gene007521:intron | 25.0% |
| ! | AGAGAACAAAAATTAACACT+TGG | + | chr7.4:9185806-9185825 | MS.gene007521:intron | 25.0% |
| ! | AGATATAGATTCCTCAAAAT+TGG | - | chr7.4:9187779-9187798 | None:intergenic | 25.0% |
| ! | ATAATTACAAACTTGTAGGT+TGG | + | chr7.4:9187843-9187862 | MS.gene007521:intron | 25.0% |
| ! | ATTCAGATTATAATCATGGA+TGG | + | chr7.4:9187618-9187637 | MS.gene007521:intron | 25.0% |
| ! | CTTTAATAACAGAAGGTAAA+AGG | - | chr7.4:9186123-9186142 | None:intergenic | 25.0% |
| ! | GAAACAAGAAAACCAAATAA+CGG | - | chr7.4:9185557-9185576 | None:intergenic | 25.0% |
| ! | GCTTATAATTACAAACTTGT+AGG | + | chr7.4:9187839-9187858 | MS.gene007521:intron | 25.0% |
| ! | TAATTCGTAAACAACTTTCA+TGG | + | chr7.4:9186876-9186895 | MS.gene007521:intron | 25.0% |
| ! | TAGTACACTTTAATAACAGA+AGG | - | chr7.4:9186130-9186149 | None:intergenic | 25.0% |
| ! | TATGATATTGTAGAGAATTG+CGG | + | chr7.4:9187522-9187541 | MS.gene007521:intron | 25.0% |
| ! | TCAAAGTTATTCATTACTTG+TGG | - | chr7.4:9186718-9186737 | None:intergenic | 25.0% |
| ! | TCTAAACATAAGAGAAAATC+AGG | - | chr7.4:9186222-9186241 | None:intergenic | 25.0% |
| ! | TTAATAACAGAAGGTAAAAG+GGG | - | chr7.4:9186121-9186140 | None:intergenic | 25.0% |
| ! | TTGTAACATCAATGTTTGTT+AGG | - | chr7.4:9187599-9187618 | None:intergenic | 25.0% |
| ! | TTTGGGCTTAATGTATATAA+TGG | - | chr7.4:9185239-9185258 | None:intergenic | 25.0% |
| !! | AAAAGAATTTGTGTTTTCTG+TGG | + | chr7.4:9184895-9184914 | MS.gene007521:CDS | 25.0% |
| !! | AACAAAAGTAGTGGAAAAAA+TGG | - | chr7.4:9187078-9187097 | None:intergenic | 25.0% |
| !! | AGTGAATTTCAGTTTTTGTA+AGG | + | chr7.4:9185167-9185186 | MS.gene007521:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr7.4:9185971-9185990 | None:intergenic | 25.0% |
| !! | TACCTATAGTTTTCTTAGTT+AGG | - | chr7.4:9188021-9188040 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr7.4:9186078-9186097 | MS.gene007521:intron | 25.0% |
| !! | TTTCAATAAGTGAGTTGAAA+TGG | + | chr7.4:9185061-9185080 | MS.gene007521:intron | 25.0% |
| !! | TTTCTTTTCTTTCATCACAT+GGG | + | chr7.4:9185485-9185504 | MS.gene007521:intron | 25.0% |
| !! | TTTTCTGAATTAACTTATGC+AGG | + | chr7.4:9187667-9187686 | MS.gene007521:intron | 25.0% |
| !! | TTTTCTTTTCTTTCATCACA+TGG | + | chr7.4:9185484-9185503 | MS.gene007521:intron | 25.0% |
| !!! | ATATTTTAAGGGATAAGGTA+AGG | - | chr7.4:9186991-9187010 | None:intergenic | 25.0% |
| !!! | ATTATCAAGTAAGCTTTGAA+GGG | - | chr7.4:9186948-9186967 | None:intergenic | 25.0% |
| AAAAGAGGTTAACAAAAGCT+TGG | - | chr7.4:9185849-9185868 | None:intergenic | 30.0% | |
| AACTTCTTGAAGTCATAACA+TGG | + | chr7.4:9187710-9187729 | MS.gene007521:CDS | 30.0% | |
| AATGAGGGAAAGTAAAGAAA+AGG | + | chr7.4:9187138-9187157 | MS.gene007521:intron | 30.0% | |
| ACTTCTTGAAGTCATAACAT+GGG | + | chr7.4:9187711-9187730 | MS.gene007521:CDS | 30.0% | |
| AGGAATCAAACAATGAGATA+TGG | - | chr7.4:9186462-9186481 | None:intergenic | 30.0% | |
| CAAAGAAAGTGATTTCACAT+GGG | - | chr7.4:9188229-9188248 | None:intergenic | 30.0% | |
| CAGTAGAAAGGTTATTGAAA+AGG | - | chr7.4:9187217-9187236 | None:intergenic | 30.0% | |
| CCACGATTTAAATAAATCCA+TGG | - | chr7.4:9187489-9187508 | None:intergenic | 30.0% | |
| CCATGGATTTATTTAAATCG+TGG | + | chr7.4:9187486-9187505 | MS.gene007521:intron | 30.0% | |
| CTCTCAAAGTTGTACTATTT+GGG | + | chr7.4:9185770-9185789 | MS.gene007521:intron | 30.0% | |
| GTCCTAACTAAGAAAACTAT+AGG | + | chr7.4:9188016-9188035 | MS.gene007521:intron | 30.0% | |
| TCAAAGAAAGTGATTTCACA+TGG | - | chr7.4:9188230-9188249 | None:intergenic | 30.0% | |
| TCTCTCAAAGTTGTACTATT+TGG | + | chr7.4:9185769-9185788 | MS.gene007521:intron | 30.0% | |
| TTGAGATGTCATAATCTTGA+GGG | - | chr7.4:9188525-9188544 | None:intergenic | 30.0% | |
| TTGGACATGTCAATTATTAC+CGG | - | chr7.4:9187760-9187779 | None:intergenic | 30.0% | |
| TTGGATAAACTAGAGGATAT+TGG | - | chr7.4:9188126-9188145 | None:intergenic | 30.0% | |
| TTGTGAGAATCAGATTGAAA+AGG | - | chr7.4:9188192-9188211 | None:intergenic | 30.0% | |
| TTTGTCAATGAATGACAACA+AGG | - | chr7.4:9187898-9187917 | None:intergenic | 30.0% | |
| ! | AACATTGATCTTGTTTATGG+AGG | + | chr7.4:9185628-9185647 | MS.gene007521:CDS | 30.0% |
| ! | AATTGACATGTCCAATTTTG+AGG | + | chr7.4:9187765-9187784 | MS.gene007521:intron | 30.0% |
| ! | AGGAACATTGATCTTGTTTA+TGG | + | chr7.4:9185625-9185644 | MS.gene007521:CDS | 30.0% |
| ! | AGTTTTCAATCACTCTTTCT+TGG | + | chr7.4:9187337-9187356 | MS.gene007521:intron | 30.0% |
| ! | CATTATCAAGTAAGCTTTGA+AGG | - | chr7.4:9186949-9186968 | None:intergenic | 30.0% |
| ! | GTTTTCAATCACTCTTTCTT+GGG | + | chr7.4:9187338-9187357 | MS.gene007521:intron | 30.0% |
| ! | TTAACTAACTCTTTTGCAGT+TGG | - | chr7.4:9187975-9187994 | None:intergenic | 30.0% |
| ! | TTTTAGTCCGTACAAATGTT+TGG | - | chr7.4:9185343-9185362 | None:intergenic | 30.0% |
| !! | ACTTGCTTCATTTGATAATG+AGG | + | chr7.4:9187122-9187141 | MS.gene007521:intron | 30.0% |
| !! | CTTGCTTCATTTGATAATGA+GGG | + | chr7.4:9187123-9187142 | MS.gene007521:intron | 30.0% |
| !! | GTTGGATTAGTAAATGTTGA+TGG | + | chr7.4:9187861-9187880 | MS.gene007521:CDS | 30.0% |
| !!! | TGATGTTGTTTGTTTTGTGA+AGG | + | chr7.4:9185597-9185616 | MS.gene007521:intron | 30.0% |
| !!! | TTTGTTTTGTGAAGGTTTCA+AGG | + | chr7.4:9185605-9185624 | MS.gene007521:intron | 30.0% |
| AAAATTAGTGACAGAGAGAG+TGG | + | chr7.4:9187298-9187317 | MS.gene007521:intron | 35.0% | |
| AACTAGTACTAGCAGTAGAA+AGG | - | chr7.4:9187229-9187248 | None:intergenic | 35.0% | |
| ACAAGAAAACCAAATAACGG+TGG | - | chr7.4:9185554-9185573 | None:intergenic | 35.0% | |
| ACAATTATGTGACGAGCATT+TGG | - | chr7.4:9187945-9187964 | None:intergenic | 35.0% | |
| AGAGTTAGTTAAGAAGTTGG+AGG | + | chr7.4:9187983-9188002 | MS.gene007521:CDS | 35.0% | |
| ATGAATAACTTTGACTAGCG+TGG | + | chr7.4:9186724-9186743 | MS.gene007521:intron | 35.0% | |
| CACTGTTCAAACAAAAGTAG+TGG | - | chr7.4:9187087-9187106 | None:intergenic | 35.0% | |
| CGCTCAAAATTTGATGTATC+TGG | + | chr7.4:9186156-9186175 | MS.gene007521:intron | 35.0% | |
| CTCAAGATTATGACATCTCA+AGG | + | chr7.4:9188524-9188543 | MS.gene007521:CDS | 35.0% | |
| CTCTGAACCAAACATTTGTA+CGG | + | chr7.4:9185333-9185352 | MS.gene007521:intron | 35.0% | |
| CTTGAGATGTCATAATCTTG+AGG | - | chr7.4:9188526-9188545 | None:intergenic | 35.0% | |
| GAAAAGGATGAAACAATGTC+AGG | - | chr7.4:9187201-9187220 | None:intergenic | 35.0% | |
| GAACTTCTTGGATAAACTAG+AGG | - | chr7.4:9188133-9188152 | None:intergenic | 35.0% | |
| GAAGGTAAAAAGTGAGAAGA+AGG | - | chr7.4:9185410-9185429 | None:intergenic | 35.0% | |
| GTGTTATATACCCAATGACA+TGG | - | chr7.4:9185708-9185727 | None:intergenic | 35.0% | |
| GTTTGATGTAGCTTCAATTG+TGG | + | chr7.4:9187553-9187572 | MS.gene007521:intron | 35.0% | |
| TACATACCAATTCATTGCCA+AGG | - | chr7.4:9184966-9184985 | None:intergenic | 35.0% | |
| TCCAAATGTAGCTATGGATA+TGG | - | chr7.4:9187438-9187457 | None:intergenic | 35.0% | |
| TCTGAATTAACTTATGCAGG+TGG | + | chr7.4:9187670-9187689 | MS.gene007521:intron | 35.0% | |
| TCTGATCAACTATATGGTTC+AGG | + | chr7.4:9187045-9187064 | MS.gene007521:intron | 35.0% | |
| TGTGTCTCTGATCAACTATA+TGG | + | chr7.4:9187039-9187058 | MS.gene007521:intron | 35.0% | |
| TTAACTTATGCAGGTGGATA+TGG | + | chr7.4:9187676-9187695 | MS.gene007521:intron | 35.0% | |
| TTAAGGGATAAGGTAAGGTA+AGG | - | chr7.4:9186986-9187005 | None:intergenic | 35.0% | |
| TTATTTAAATCGTGGTCGCA+TGG | + | chr7.4:9187494-9187513 | MS.gene007521:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr7.4:9186082-9186101 | MS.gene007521:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr7.4:9186101-9186082 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr7.4:9186081-9186100 | MS.gene007521:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr7.4:9186100-9186081 | None:intergenic | 35.0% | |
| TTTGTGTCCAAATGTAGCTA+TGG | - | chr7.4:9187444-9187463 | None:intergenic | 35.0% | |
| ! | AACTGTTGTTGTGTTTTGTG+GGG | + | chr7.4:9186604-9186623 | MS.gene007521:intron | 35.0% |
| ! | ATTGATCTTGTTTATGGAGG+AGG | + | chr7.4:9185631-9185650 | MS.gene007521:CDS | 35.0% |
| ! | CAACTGTTGTTGTGTTTTGT+GGG | + | chr7.4:9186603-9186622 | MS.gene007521:intron | 35.0% |
| ! | CCTAAGAAAATTGATTCCCA+AGG | + | chr7.4:9187366-9187385 | MS.gene007521:intron | 35.0% |
| ! | CCTTGGGAATCAATTTTCTT+AGG | - | chr7.4:9187369-9187388 | None:intergenic | 35.0% |
| ! | GTGAGTTGAAATGGTGTATA+TGG | + | chr7.4:9185070-9185089 | MS.gene007521:intron | 35.0% |
| ! | GTTTGAAGCAATGAGAAAAG+AGG | - | chr7.4:9186847-9186866 | None:intergenic | 35.0% |
| ! | TGGGAATCAATTTTCTTAGG+AGG | - | chr7.4:9187366-9187385 | None:intergenic | 35.0% |
| !! | CACTACTTTTGTTTGAACAG+TGG | + | chr7.4:9187085-9187104 | MS.gene007521:intron | 35.0% |
| !! | CTTTGAAATGCAAACAGTGA+AGG | - | chr7.4:9185428-9185447 | None:intergenic | 35.0% |
| !!! | TGGTAGGTAGTTTTTTTACC+AGG | - | chr7.4:9184928-9184947 | None:intergenic | 35.0% |
| !!! | TGGTTGCTTTTTAGACAGAA+TGG | + | chr7.4:9186537-9186556 | MS.gene007521:intron | 35.0% |
| AAACACTGGCAAGAACTTCT+TGG | - | chr7.4:9188145-9188164 | None:intergenic | 40.0% | |
| AAGTTCTTGCCAGTGTTTGT+TGG | + | chr7.4:9188147-9188166 | MS.gene007521:intron | 40.0% | |
| ACTCACGCAATGGTGAAATA+AGG | + | chr7.4:9184860-9184879 | MS.gene007521:CDS | 40.0% | |
| ACTTGGAATTCATGACAAGC+CGG | + | chr7.4:9187738-9187757 | MS.gene007521:CDS | 40.0% | |
| ATTGACAAAGCTGTGGAAGA+AGG | + | chr7.4:9187909-9187928 | MS.gene007521:CDS | 40.0% | |
| CAATTCATTGCCAAGGTTCA+TGG | - | chr7.4:9184959-9184978 | None:intergenic | 40.0% | |
| CATGAACCTTGGCAATGAAT+TGG | + | chr7.4:9184957-9184976 | MS.gene007521:CDS | 40.0% | |
| CCACAAAACACAACAACAGT+TGG | - | chr7.4:9186605-9186624 | None:intergenic | 40.0% | |
| CCATTCATTGAGGACAAGAA+AGG | + | chr7.4:9186748-9186767 | MS.gene007521:intron | 40.0% | |
| CCTTTCTTGTCCTCAATGAA+TGG | - | chr7.4:9186751-9186770 | None:intergenic | 40.0% | |
| CTGTTGCTGATATGCATCAA+AGG | + | chr7.4:9186323-9186342 | MS.gene007521:CDS | 40.0% | |
| GAGTATGTTCCATGTCATGA+GGG | + | chr7.4:9188454-9188473 | MS.gene007521:CDS | 40.0% | |
| GCCATATCCATAGCTACATT+TGG | + | chr7.4:9187434-9187453 | MS.gene007521:intron | 40.0% | |
| GTAATAGTGCCAACAAACAC+TGG | - | chr7.4:9188159-9188178 | None:intergenic | 40.0% | |
| GTCATTCATTGACAAAGCTG+TGG | + | chr7.4:9187902-9187921 | MS.gene007521:CDS | 40.0% | |
| GTTTCTCAAGCTGTTCATGA+TGG | + | chr7.4:9185676-9185695 | MS.gene007521:CDS | 40.0% | |
| TACTAGACAAATACCTCTCG+AGG | - | chr7.4:9185942-9185961 | None:intergenic | 40.0% | |
| TATTTGTCTAGTACTCCCTC+CGG | + | chr7.4:9185949-9185968 | MS.gene007521:intron | 40.0% | |
| TCATAGTCACCACCGTTATT+TGG | + | chr7.4:9185542-9185561 | MS.gene007521:intron | 40.0% | |
| TGAAACAGTAGGAGAAGTGA+AGG | + | chr7.4:9186300-9186319 | MS.gene007521:CDS | 40.0% | |
| TTGACAAAGCTGTGGAAGAA+GGG | + | chr7.4:9187910-9187929 | MS.gene007521:CDS | 40.0% | |
| ! | CCAACTGTTGTTGTGTTTTG+TGG | + | chr7.4:9186602-9186621 | MS.gene007521:intron | 40.0% |
| ! | GATGCTTTTATTGCCTTACC+AGG | + | chr7.4:9186370-9186389 | MS.gene007521:CDS | 40.0% |
| ! | GGTTAAACTTTTACTCCCTC+CGG | - | chr7.4:9186100-9186119 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGGTCTATGCGA+CGG | - | chr7.4:9187587-9187606 | None:intergenic | 40.0% |
| !!! | GATGTCATTTTGCAGCTAAC+TGG | + | chr7.4:9186277-9186296 | MS.gene007521:intron | 40.0% |
| AGGTGGATATGGAACTCTAG+AGG | + | chr7.4:9187687-9187706 | MS.gene007521:intron | 45.0% | |
| ATTAGTGACAGAGAGAGTGG+AGG | + | chr7.4:9187301-9187320 | MS.gene007521:intron | 45.0% | |
| CAGCTAACTGGTGAAACAGT+AGG | + | chr7.4:9186289-9186308 | MS.gene007521:intron | 45.0% | |
| CTATGGATATGGCAGTGTCA+GGG | - | chr7.4:9187427-9187446 | None:intergenic | 45.0% | |
| GATGAAACAATGTCAGGTGC+AGG | - | chr7.4:9187195-9187214 | None:intergenic | 45.0% | |
| GCATCAAAGGAAAGCTGAGA+TGG | + | chr7.4:9186336-9186355 | MS.gene007521:CDS | 45.0% | |
| GGAGTATGTTCCATGTCATG+AGG | + | chr7.4:9188453-9188472 | MS.gene007521:intron | 45.0% | |
| GTCATAACATGGGCTCAACT+TGG | + | chr7.4:9187721-9187740 | MS.gene007521:CDS | 45.0% | |
| TATGGATATGGCAGTGTCAG+GGG | - | chr7.4:9187426-9187445 | None:intergenic | 45.0% | |
| TCTCAAGCTGTTCATGATGG+CGG | + | chr7.4:9185679-9185698 | MS.gene007521:CDS | 45.0% | |
| TGCTAAGTGCTAACCTGGTA+AGG | - | chr7.4:9186386-9186405 | None:intergenic | 45.0% | |
| TTGCATGCTAAGTGCTAACC+TGG | - | chr7.4:9186391-9186410 | None:intergenic | 45.0% | |
| TTTAAATCGTGGTCGCATGG+CGG | + | chr7.4:9187497-9187516 | MS.gene007521:intron | 45.0% | |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | + | chr7.4:9185640-9185659 | MS.gene007521:CDS | 45.0% |
| ! | GTTTTCTGTGGAAGTAGTCC+TGG | + | chr7.4:9184907-9184926 | MS.gene007521:CDS | 45.0% |
| ATATGGCAGTGTCAGGGGAA+AGG | - | chr7.4:9187421-9187440 | None:intergenic | 50.0% | |
| CAAGATGCTGCCATGAACCT+TGG | + | chr7.4:9184946-9184965 | MS.gene007521:CDS | 50.0% | |
| CAAGGTTCATGGCAGCATCT+TGG | - | chr7.4:9184948-9184967 | None:intergenic | 50.0% | |
| CTAGCGTGGTCCATTCATTG+AGG | + | chr7.4:9186738-9186757 | MS.gene007521:intron | 50.0% | |
| GAAGCAACACCCTCATGACA+TGG | - | chr7.4:9188466-9188485 | None:intergenic | 50.0% | |
| GCTATGGATATGGCAGTGTC+AGG | - | chr7.4:9187428-9187447 | None:intergenic | 50.0% | |
| GTTCATGGCAGCATCTTGGT+AGG | - | chr7.4:9184944-9184963 | None:intergenic | 50.0% | |
| TCTCGAGGCATGAGTGTCTT+GGG | - | chr7.4:9185927-9185946 | None:intergenic | 50.0% | |
| TGTCAGGTGCAGGTGCTAAT+TGG | - | chr7.4:9187185-9187204 | None:intergenic | 50.0% | |
| TTCCATCTGCCAGCTCAACT+TGG | - | chr7.4:9188488-9188507 | None:intergenic | 50.0% | |
| ! | TTCCAAGTTGAGCTGGCAGA+TGG | + | chr7.4:9188483-9188502 | MS.gene007521:CDS | 50.0% |
| !! | AGGAGGAAGCATTGGTCTCA+TGG | + | chr7.4:9185648-9185667 | MS.gene007521:CDS | 50.0% |
| !! | GGAGGAAGCATTGGTCTCAT+GGG | + | chr7.4:9185649-9185668 | MS.gene007521:CDS | 50.0% |
| !! | GTGTTGCTTCCAAGTTGAGC+TGG | + | chr7.4:9188476-9188495 | MS.gene007521:CDS | 50.0% |
| ATGGCGGTCGCCATGTCATT+GGG | + | chr7.4:9185695-9185714 | MS.gene007521:CDS | 55.0% | |
| CAAGACACTCATGCCTCGAG+AGG | + | chr7.4:9185926-9185945 | MS.gene007521:CDS | 55.0% | |
| CTCTCGAGGCATGAGTGTCT+TGG | - | chr7.4:9185928-9185947 | None:intergenic | 55.0% | |
| ! | GATGGCGGTCGCCATGTCAT+TGG | + | chr7.4:9185694-9185713 | MS.gene007521:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 9184856 | 9188549 | 9184856 | ID=MS.gene007521 |
| chr7.4 | mRNA | 9184856 | 9188549 | 9184856 | ID=MS.gene007521.t1;Parent=MS.gene007521 |
| chr7.4 | exon | 9184856 | 9184978 | 9184856 | ID=MS.gene007521.t1.exon1;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9184856 | 9184978 | 9184856 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| chr7.4 | exon | 9185619 | 9185716 | 9185619 | ID=MS.gene007521.t1.exon2;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9185619 | 9185716 | 9185619 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| chr7.4 | exon | 9185917 | 9185947 | 9185917 | ID=MS.gene007521.t1.exon3;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9185917 | 9185947 | 9185917 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| chr7.4 | exon | 9186292 | 9186391 | 9186292 | ID=MS.gene007521.t1.exon4;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9186292 | 9186391 | 9186292 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| chr7.4 | exon | 9187689 | 9187759 | 9187689 | ID=MS.gene007521.t1.exon5;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9187689 | 9187759 | 9187689 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| chr7.4 | exon | 9187861 | 9188004 | 9187861 | ID=MS.gene007521.t1.exon6;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9187861 | 9188004 | 9187861 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| chr7.4 | exon | 9188454 | 9188549 | 9188454 | ID=MS.gene007521.t1.exon7;Parent=MS.gene007521.t1 |
| chr7.4 | CDS | 9188454 | 9188549 | 9188454 | ID=cds.MS.gene007521.t1;Parent=MS.gene007521.t1 |
| Gene Sequence |
| Protein sequence |
