AlfalfaGEDB | MS.gene24610

M. sativa cultivar XinJiangDaYe / MS.gene24610

KEGG: K22522
GO: -
PFAM: PF03641.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24610.t1	XP_003590484.1	99.1	219	2	0	1	219	1	219	2.00E-119	438.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24610.t1	Q8L8B8	85.6	215	29	2	1	214	1	214	1.5e-102	373.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24610.t1	G7IBJ6	99.1	219	2	0	1	219	1	219	1.5e-119	438.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene24610	0.860881	1.52E-63	-1.69E-46
MS.gene049340	MS.gene24610	0.81616	6.38E-52	-1.69E-46
MS.gene049341	MS.gene24610	0.854328	1.32E-61	-1.69E-46
MS.gene049821	MS.gene24610	0.832578	8.73E-56	-1.69E-46
MS.gene049979	MS.gene24610	0.801401	9.16E-49	-1.69E-46
MS.gene050020	MS.gene24610	0.842113	3.15E-58	-1.69E-46
MS.gene050277	MS.gene24610	0.826123	3.22E-54	-1.69E-46
MS.gene050437	MS.gene24610	0.804288	2.32E-49	-1.69E-46
MS.gene050689	MS.gene24610	0.85599	4.35E-62	-1.69E-46
MS.gene050807	MS.gene24610	0.841858	3.68E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007681	MS.gene24610	PPI
MS.gene050128	MS.gene24610	PPI
MS.gene051577	MS.gene24610	PPI
MS.gene08753	MS.gene24610	PPI
MS.gene22428	MS.gene24610	PPI
MS.gene24610	MS.gene20068	PPI
MS.gene24610	MS.gene055648	PPI
MS.gene24610	MS.gene029824	PPI
MS.gene24610	MS.gene016181	PPI
MS.gene24610	MS.gene034799	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24610.t1	MTR_1g064260	99.087	219	2	0	1	219	1	219	3.90e-162	446
MS.gene24610.t1	MTR_7g101290	93.981	216	13	0	4	219	5	220	6.41e-155	428
MS.gene24610.t1	MTR_0041s0100	93.981	216	13	0	4	219	5	220	6.41e-155	428
MS.gene24610.t1	MTR_2g094790	85.507	207	30	0	1	207	1	207	2.72e-132	370
MS.gene24610.t1	MTR_4g058740	89.637	193	20	0	12	204	12	204	6.05e-128	359
MS.gene24610.t1	MTR_3g113710	76.190	210	50	0	10	219	12	221	2.64e-122	346
MS.gene24610.t1	MTR_1g064260	98.773	163	2	0	57	219	1	163	5.10e-118	333
MS.gene24610.t1	MTR_1g057020	71.770	209	57	1	10	218	6	212	1.04e-111	318
MS.gene24610.t1	MTR_3g113710	78.771	179	38	0	10	188	12	190	5.25e-107	308
MS.gene24610.t1	MTR_1g015830	67.327	202	66	0	11	212	7	208	4.66e-102	294

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24610.t1	AT2G37210	85.581	215	29	2	1	214	1	214	7.03e-136	380
MS.gene24610.t1	AT3G53450	86.058	208	28	1	1	207	1	208	2.68e-133	373
MS.gene24610.t1	AT2G28305	89.394	198	21	0	10	207	5	202	9.83e-131	367
MS.gene24610.t1	AT2G37210	76.569	239	30	3	1	214	1	238	4.81e-130	366
MS.gene24610.t1	AT2G28305	90.503	179	17	0	10	188	5	183	2.45e-119	337
MS.gene24610.t1	AT5G06300	78.218	202	44	0	10	211	6	207	5.38e-118	335
MS.gene24610.t1	AT5G03270	82.796	186	32	0	10	195	16	201	3.41e-112	319
MS.gene24610.t1	AT5G03270	83.425	181	30	0	10	190	16	196	5.33e-109	311
MS.gene24610.t1	AT4G35190	71.429	203	58	0	6	208	2	204	1.56e-108	311
MS.gene24610.t1	AT2G35990	69.072	194	60	0	10	203	6	199	2.88e-105	302

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Find 53 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTTAGTGAAGAAAC+TGG	0.405307	1.2:-49094774	MS.gene24610:CDS
AAATTACATGCAGGTGGTTA+TGG	0.290968	1.2:-49095079	MS.gene24610:intron
AAGAGTGTCAAAGTTCAAGA+GGG	0.616352	1.2:-49097406	MS.gene24610:CDS
AAGCATTGGTCTAATGGGTT+CGG	0.439439	1.2:-49096845	MS.gene24610:CDS
AATATTGATCTAGTTTATGG+AGG	0.578824	1.2:-49096871	MS.gene24610:CDS
AATTACATGCAGGTGGTTAT+GGG	0.415602	1.2:-49095078	MS.gene24610:intron
ACAATTATGTGGCGCGCATT+TGG	0.351381	1.2:+49094812	None:intergenic
ACTTGGGATTCATGACAAAC+CGG	0.526362	1.2:-49095017	MS.gene24610:intron
AGAAATATTGATCTAGTTTA+TGG	0.173128	1.2:-49096874	MS.gene24610:CDS
AGAGTTAGTGAAGAAACTGG+AGG	0.710150	1.2:-49094771	MS.gene24610:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGTTAGTGAAGAAAC+TGG	-	chr1.2:49097234-49097253	MS.gene24610:intron	30.0%
AAATGGTACAAGTCAATTAC+CGG	+	chr1.2:49097013-49097032	None:intergenic	30.0%
AAATTAGTGACTGTTACAGA+AGG	-	chr1.2:49096574-49096593	MS.gene24610:intron	30.0%
AACTTATGCAAATTACATGC+AGG	-	chr1.2:49096920-49096939	MS.gene24610:intron	30.0%
AAGAATAGTACACCTTACTT+TGG	-	chr1.2:49095930-49095949	MS.gene24610:intron	30.0%
AAGCATTAAAGACTGAGATA+TGG	+	chr1.2:49096032-49096051	None:intergenic	30.0%
ACAATATTAATGATTAGGCG+TGG	+	chr1.2:49096094-49096113	None:intergenic	30.0%
ACAGTGTATCAAAATTACCT+TGG	+	chr1.2:49096119-49096138	None:intergenic	30.0%
AGGAAAGTAGATGCAAAAAA+TGG	+	chr1.2:49096376-49096395	None:intergenic	30.0%
ATCAAAACCATGAGTAAGTT+TGG	+	chr1.2:49096420-49096439	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	49094582	49097448	49094582	ID=MS.gene24610
chr1.2	mRNA	49094582	49097448	49094582	ID=MS.gene24610.t1;Parent=MS.gene24610
chr1.2	exon	49097329	49097448	49097329	ID=MS.gene24610.t1.exon1;Parent=MS.gene24610.t1
chr1.2	CDS	49097329	49097448	49097329	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1
chr1.2	exon	49096805	49096902	49096805	ID=MS.gene24610.t1.exon2;Parent=MS.gene24610.t1
chr1.2	CDS	49096805	49096902	49096805	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1
chr1.2	exon	49096641	49096671	49096641	ID=MS.gene24610.t1.exon3;Parent=MS.gene24610.t1
chr1.2	CDS	49096641	49096671	49096641	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1
chr1.2	exon	49096115	49096214	49096115	ID=MS.gene24610.t1.exon4;Parent=MS.gene24610.t1
chr1.2	CDS	49096115	49096214	49096115	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1
chr1.2	exon	49095018	49095088	49095018	ID=MS.gene24610.t1.exon5;Parent=MS.gene24610.t1
chr1.2	CDS	49095018	49095088	49095018	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1
chr1.2	exon	49094772	49094915	49094772	ID=MS.gene24610.t1.exon6;Parent=MS.gene24610.t1
chr1.2	CDS	49094772	49094915	49094772	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1
chr1.2	exon	49094582	49094677	49094582	ID=MS.gene24610.t1.exon7;Parent=MS.gene24610.t1
chr1.2	CDS	49094582	49094677	49094582	ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1

Gene Sequence

>MS.gene24610

ATGGAGACAAATGGTGAGATAAGAGTGTCAAAGTTCAAGAGGGTTTGTGTCTTTTGTGGAAGTAGTCCTGGCAAGAAAAGTAGTTATCAAGATGCTGCCATTGAACTTGGAAATGAATTGGTATATATTAATATTAATGATTTTTCCTTACATACTGTTTTTTTTCCTTCTTTTTTGAGAAAAAAAAATCTTATTTATTTTTTGTGGATGGGGTGAAAATGGTTAAACTTTATGATATGACATGTTGAATATTCTAATTCCTTTGTATATTTCAGTTGGGTCAGTTTCTTGTGTTTATAACATGTTTGTTACTTTGTAACTTGAAACTATGTCTCTCTATTTGATGCAAAATATAAATTTTTTGTTTTTTGGATCATTACTTAATCACATGTTTTTAAGTTAAAACTATCCTAAAGTTTTTTTCATATATATTTTTTTTTTATATCTATGGTCTTTGACCTTTCTCAGCTTTTTAAAGTATCCATTTTTCATTTCAAACTTGATAATATTATGACTTATCCCAATCAATTTTAATGGTTTGTGAAGGTGTCAAGAAATATTGATCTAGTTTATGGAGGAGGAAGCATTGGTCTAATGGGTTCGGTTTCACAAGCTGTTCATGATGGTGGAAGACATGTCATAGGGTATTATCTCTTTTCCTCAAAGTTTTCATTTTTATGAAATAGTAAACCATAATAGTCTATTGTGCTTGATTGATTATGTTGATCTCTTTGTCCATTGACACTGGTTTATTTGTCATGTTATTGTCTCTTGCAGAGTTATTCCCAAGACACTCATGCCTAGAGAGGTATGTGAGAAAAGCTTATAGTCTTTTTTCTTATTATTTATAGTGTATTATTTCAAGATTCTCTTCTTTAATTTAATTATTTTCCTTTATTATTCACTTTTTTCATTGATACTATATTCTATTCATATATACCTATTTCCTTGTTCTGTATTTTAAGTTAAGCTTCTTGTTAATTACACAGTTTTTTTGTTAAAGTTATTTTCTTTTGGGTAGGAAGAAAAAAACAAAGTGTGATAAAAGTAATAATAAAGAAATGGATCTTTTCACTCTTTTGTTTTACTTCAGTGGCTTATAATGTGCTGGAATTTTTCTTCACTTCTGTGTTTTGTTTTTCTCTTTATTATTTATTATTATCTCTTCACTTTTTGATTTTTGTTTTGTTCTTATTTTCTGTTCCATTTCTTATCCATTGGATCCTTTTTGCAGCTAACTGGTGAAACGGTGGGAGAAGTAAAAGCTGTAGCAGATATGCATCAAAGGAAGGCAGAGATGGCTAAGCATTCAGATGCTTTTATTGCCTTACCAGGTTAGCCTGAGCTAAAGAATAGTACACCTTACTTTGGTTGCATTACAGAAAAGTAGTAGAAATTTACTTCAAAAGTGCTTCTAGCTTTCTTTAGTTTTATCATGTACCATTGACCATATCTCAGTCTTTAATGCTTTCTTCAATAACCTAACAAACTTAATTACTAAAAGGTTTACCACGCCTAATCATTAATATTGTTGCCAAGGTAATTTTGATACACTGTCAGTGTCATATTAAAAAATTGTAAACTCTTAACAAATCATAGTTAATCAAATCAATTAGTCAAATAAATATGACACTGGTGTTGCAATGTGACTTCATATATCCTAATGCTATGATGATTAGAGAGTGACTCTTCAAAACTGGCTGATCCTGACTTTGCCTGAGACCCTAACATATTTGGCTAAAATTTTGAACTGCTTTGACTCTGAAAAACTATGGTTCTCTGGTTGAAGTACCATTTTTTGCATCTACTTTCCTTGGAATCATGACGTTTTTGTACCAAACTTACTCATGGTTTTGATATAGAAAGGAAAGTAAAGCAAAAGAATAACTGTCACAAGATAATGTTTTCAAATAGCACCTGTACATGTCATGAAATAGTGCTTCTTTTCAAAGACTTTTATTTCTGGTAGTACTTATCATTCTGAGATGCTGAAAATTAGTGACTGTTACAGAAGGCAAGGCACACAAAGACAAAACTTGTCATTCACTCTTTCTTGGGATCCCTTGCAAGATAGAGGGAAGAGAGAGAGGGTGATAAGGGGTCTTAATTTGGTGCATTATGTAATCTAACTCGGCCATTGATTTGAAATCGAACGACTTAGATTACTCATTTACTATATAAAAAAAATGATCTGACCATTGGTTTAGATCGAAGGGTCAAGATCAGTAACTGTGTGCCATAATTATTGTAGGGAATCTGTTTCGGATGCGAAGCCAGTTTATTAGATGACCTTAAGTGTTCCTGTTCTCCTATGTTTTTTTGCATTAAATTCTTGTAAAACTTATGCAAATTACATGCAGGTGGTTATGGGACCCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCTCAACTTGGGATTCATGACAAACCGGTAATTGACTTGTACCATTTTGTTAAGGAACCTAAATATTATTAACTAATTCACATTGTGCTATTACCAGTTTAACTAGATTTGACATTCCACAACTCGCAGGTGGGACTAGTAAATGTTGATGGATACTTTAATTCATTACTTTCATTCATCGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCGCGCCACATAATTGTATCAGCACCTACATCAAAAGAGTTAGTGAAGAAACTGGAGGTAAAATCAAAGTGTTTGTATATGCAATCACATTCTTTTCTTCAGCAGAATTAAGCAAAAATGATATATATTTATTATGTTTGATTCATCACAGGATTATGTTCCTTGTCACGAAGGCGTTGCTTCGAAGTTGAGCTGGCAGATGGAACAAGAGCTAGCCTATCCTGAAGAGTATGACATCTCAAGGTAG

Protein sequence

>MS.gene24610.t1

METNGEIRVSKFKRVCVFCGSSPGKKSSYQDAAIELGNELVSRNIDLVYGGGSIGLMGSVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTSKELVKKLEDYVPCHEGVASKLSWQMEQELAYPEEYDISR