Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24610.t1 | XP_003590484.1 | 99.1 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 2.00E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24610.t1 | Q8L8B8 | 85.6 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 1.5e-102 | 373.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24610.t1 | G7IBJ6 | 99.1 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 1.5e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene24610 | 0.860881 | 1.52E-63 | -1.69E-46 |
| MS.gene049340 | MS.gene24610 | 0.81616 | 6.38E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene24610 | 0.854328 | 1.32E-61 | -1.69E-46 |
| MS.gene049821 | MS.gene24610 | 0.832578 | 8.73E-56 | -1.69E-46 |
| MS.gene049979 | MS.gene24610 | 0.801401 | 9.16E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene24610 | 0.842113 | 3.15E-58 | -1.69E-46 |
| MS.gene050277 | MS.gene24610 | 0.826123 | 3.22E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene24610 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene24610 | 0.85599 | 4.35E-62 | -1.69E-46 |
| MS.gene050807 | MS.gene24610 | 0.841858 | 3.68E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene24610 | 0.819235 | 1.29E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene24610 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene24610 | 0.815865 | 7.43E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene24610 | 0.817234 | 3.67E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene24610 | 0.837204 | 5.97E-57 | -1.69E-46 |
| MS.gene051328 | MS.gene24610 | 0.8685 | 6.24E-66 | -1.69E-46 |
| MS.gene05134 | MS.gene24610 | 0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene24610 | 0.802474 | 5.52E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene24610 | 0.819009 | 1.45E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene24610 | 0.859526 | 3.89E-63 | -1.69E-46 |
| MS.gene052516 | MS.gene24610 | 0.814972 | 1.17E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene24610 | 0.834141 | 3.56E-56 | -1.69E-46 |
| MS.gene052879 | MS.gene24610 | 0.819963 | 8.81E-53 | -1.69E-46 |
| MS.gene052880 | MS.gene24610 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene24610 | 0.840115 | 1.06E-57 | -1.69E-46 |
| MS.gene053563 | MS.gene24610 | 0.817744 | 2.81E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene24610 | 0.833023 | 6.77E-56 | -1.69E-46 |
| MS.gene053590 | MS.gene24610 | 0.82343 | 1.39E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene24610 | 0.812098 | 5.03E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene24610 | 0.839853 | 1.24E-57 | -1.69E-46 |
| MS.gene055465 | MS.gene24610 | 0.802085 | 6.63E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene24610 | 0.803864 | 2.84E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene24610 | 0.816501 | 5.35E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene24610 | 0.823349 | 1.45E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene24610 | -0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene24610 | 0.823011 | 1.74E-53 | -1.69E-46 |
| MS.gene055912 | MS.gene24610 | 0.947936 | 2.54E-106 | -1.69E-46 |
| MS.gene056043 | MS.gene24610 | -0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene056580 | MS.gene24610 | 0.802325 | 5.92E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene24610 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene24610 | 0.828175 | 1.04E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene24610 | 0.827631 | 1.41E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene24610 | 0.808666 | 2.77E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene24610 | 0.816517 | 5.31E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene24610 | 0.831329 | 1.78E-55 | -1.69E-46 |
| MS.gene057705 | MS.gene24610 | 0.850859 | 1.29E-60 | -1.69E-46 |
| MS.gene058055 | MS.gene24610 | 0.831122 | 2.00E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene24610 | 0.822218 | 2.66E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene24610 | 0.838257 | 3.20E-57 | -1.69E-46 |
| MS.gene059787 | MS.gene24610 | 0.806962 | 6.37E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene24610 | 0.827346 | 1.65E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene24610 | 0.811276 | 7.59E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene24610 | 0.81999 | 8.69E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene24610 | 0.82982 | 4.16E-55 | -1.69E-46 |
| MS.gene060917 | MS.gene24610 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene061176 | MS.gene24610 | 0.833676 | 4.65E-56 | -1.69E-46 |
| MS.gene061177 | MS.gene24610 | 0.832894 | 7.29E-56 | -1.69E-46 |
| MS.gene061178 | MS.gene24610 | 0.833813 | 4.30E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24610 | MS.gene20068 | PPI |
| MS.gene24610 | MS.gene055648 | PPI |
| MS.gene33028 | MS.gene24610 | PPI |
| MS.gene24610 | MS.gene029824 | PPI |
| MS.gene08753 | MS.gene24610 | PPI |
| MS.gene24610 | MS.gene016181 | PPI |
| MS.gene24610 | MS.gene034799 | PPI |
| MS.gene051577 | MS.gene24610 | PPI |
| MS.gene24610 | MS.gene41079 | PPI |
| MS.gene22428 | MS.gene24610 | PPI |
| MS.gene24610 | MS.gene016180 | PPI |
| MS.gene24610 | MS.gene007521 | PPI |
| MS.gene24610 | MS.gene007426 | PPI |
| MS.gene24610 | MS.gene028695 | PPI |
| MS.gene007681 | MS.gene24610 | PPI |
| MS.gene24610 | MS.gene08691 | PPI |
| MS.gene24610 | MS.gene52386 | PPI |
| MS.gene31266 | MS.gene24610 | PPI |
| MS.gene050128 | MS.gene24610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24610.t1 | MTR_1g064260 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 3.90e-162 | 446 |
| MS.gene24610.t1 | MTR_7g101290 | 93.981 | 216 | 13 | 0 | 4 | 219 | 5 | 220 | 6.41e-155 | 428 |
| MS.gene24610.t1 | MTR_0041s0100 | 93.981 | 216 | 13 | 0 | 4 | 219 | 5 | 220 | 6.41e-155 | 428 |
| MS.gene24610.t1 | MTR_2g094790 | 85.507 | 207 | 30 | 0 | 1 | 207 | 1 | 207 | 2.72e-132 | 370 |
| MS.gene24610.t1 | MTR_4g058740 | 89.637 | 193 | 20 | 0 | 12 | 204 | 12 | 204 | 6.05e-128 | 359 |
| MS.gene24610.t1 | MTR_3g113710 | 76.190 | 210 | 50 | 0 | 10 | 219 | 12 | 221 | 2.64e-122 | 346 |
| MS.gene24610.t1 | MTR_1g064260 | 98.773 | 163 | 2 | 0 | 57 | 219 | 1 | 163 | 5.10e-118 | 333 |
| MS.gene24610.t1 | MTR_1g057020 | 71.770 | 209 | 57 | 1 | 10 | 218 | 6 | 212 | 1.04e-111 | 318 |
| MS.gene24610.t1 | MTR_3g113710 | 78.771 | 179 | 38 | 0 | 10 | 188 | 12 | 190 | 5.25e-107 | 308 |
| MS.gene24610.t1 | MTR_1g015830 | 67.327 | 202 | 66 | 0 | 11 | 212 | 7 | 208 | 4.66e-102 | 294 |
| MS.gene24610.t1 | MTR_3g113710 | 76.712 | 146 | 34 | 0 | 74 | 219 | 10 | 155 | 4.44e-81 | 239 |
| MS.gene24610.t1 | MTR_1g015830 | 66.026 | 156 | 53 | 0 | 57 | 212 | 1 | 156 | 3.45e-74 | 222 |
| MS.gene24610.t1 | MTR_1g024145 | 71.845 | 103 | 29 | 0 | 28 | 130 | 150 | 252 | 5.51e-47 | 155 |
| MS.gene24610.t1 | MTR_1g024850 | 74.286 | 70 | 18 | 0 | 10 | 79 | 14 | 83 | 1.20e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24610.t1 | AT2G37210 | 85.581 | 215 | 29 | 2 | 1 | 214 | 1 | 214 | 7.03e-136 | 380 |
| MS.gene24610.t1 | AT3G53450 | 86.058 | 208 | 28 | 1 | 1 | 207 | 1 | 208 | 2.68e-133 | 373 |
| MS.gene24610.t1 | AT2G28305 | 89.394 | 198 | 21 | 0 | 10 | 207 | 5 | 202 | 9.83e-131 | 367 |
| MS.gene24610.t1 | AT2G37210 | 76.569 | 239 | 30 | 3 | 1 | 214 | 1 | 238 | 4.81e-130 | 366 |
| MS.gene24610.t1 | AT2G28305 | 90.503 | 179 | 17 | 0 | 10 | 188 | 5 | 183 | 2.45e-119 | 337 |
| MS.gene24610.t1 | AT5G06300 | 78.218 | 202 | 44 | 0 | 10 | 211 | 6 | 207 | 5.38e-118 | 335 |
| MS.gene24610.t1 | AT5G03270 | 82.796 | 186 | 32 | 0 | 10 | 195 | 16 | 201 | 3.41e-112 | 319 |
| MS.gene24610.t1 | AT5G03270 | 83.425 | 181 | 30 | 0 | 10 | 190 | 16 | 196 | 5.33e-109 | 311 |
| MS.gene24610.t1 | AT4G35190 | 71.429 | 203 | 58 | 0 | 6 | 208 | 2 | 204 | 1.56e-108 | 311 |
| MS.gene24610.t1 | AT2G35990 | 69.072 | 194 | 60 | 0 | 10 | 203 | 6 | 199 | 2.88e-105 | 302 |
| MS.gene24610.t1 | AT4G35190 | 73.057 | 193 | 50 | 1 | 6 | 198 | 2 | 192 | 8.10e-103 | 296 |
| MS.gene24610.t1 | AT5G11950 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 1.96e-100 | 290 |
| MS.gene24610.t1 | AT5G11950 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 1.96e-100 | 290 |
| MS.gene24610.t1 | AT5G11950 | 63.679 | 212 | 74 | 1 | 1 | 212 | 1 | 209 | 1.96e-100 | 290 |
| MS.gene24610.t1 | AT2G28305 | 91.667 | 132 | 11 | 0 | 10 | 141 | 5 | 136 | 1.73e-86 | 253 |
| MS.gene24610.t1 | AT2G35990 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.74e-76 | 228 |
| MS.gene24610.t1 | AT2G35990 | 69.388 | 147 | 45 | 0 | 57 | 203 | 1 | 147 | 1.74e-76 | 228 |
| MS.gene24610.t1 | AT5G11950 | 64.103 | 156 | 56 | 0 | 57 | 212 | 1 | 156 | 7.71e-73 | 218 |
| MS.gene24610.t1 | AT5G26140 | 51.656 | 151 | 51 | 1 | 84 | 212 | 6 | 156 | 1.12e-46 | 152 |
| MS.gene24610.t1 | AT5G26140 | 50.365 | 137 | 46 | 1 | 98 | 212 | 1 | 137 | 1.84e-39 | 133 |
| MS.gene24610.t1 | AT5G26140 | 53.774 | 106 | 49 | 0 | 107 | 212 | 17 | 122 | 3.57e-35 | 121 |
Find 53 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATTGATCTAGTTTA+TGG | 0.173128 | 1.2:-49096874 | MS.gene24610:CDS |
| AAATTACATGCAGGTGGTTA+TGG | 0.290968 | 1.2:-49095079 | MS.gene24610:intron |
| CAAGATGCTGCCATTGAACT+TGG | 0.349737 | 1.2:-49097339 | MS.gene24610:CDS |
| ACAATTATGTGGCGCGCATT+TGG | 0.351381 | 1.2:+49094812 | None:intergenic |
| CTTGAGATGTCATACTCTTC+AGG | 0.376180 | 1.2:+49094586 | None:intergenic |
| AGGAGGAAGCATTGGTCTAA+TGG | 0.380070 | 1.2:-49096851 | MS.gene24610:CDS |
| AAAAGAGTTAGTGAAGAAAC+TGG | 0.405307 | 1.2:-49094774 | MS.gene24610:CDS |
| CATTGAACTTGGAAATGAAT+TGG | 0.407304 | 1.2:-49097328 | MS.gene24610:intron |
| AATTACATGCAGGTGGTTAT+GGG | 0.415602 | 1.2:-49095078 | MS.gene24610:intron |
| GATGGTGGAAGACATGTCAT+AGG | 0.434367 | 1.2:-49096805 | MS.gene24610:CDS |
| CTCTCTAGGCATGAGTGTCT+TGG | 0.437074 | 1.2:+49096641 | None:intergenic |
| AAGCATTGGTCTAATGGGTT+CGG | 0.439439 | 1.2:-49096845 | MS.gene24610:CDS |
| GTCATAACCTGGGCTCAACT+TGG | 0.447889 | 1.2:-49095034 | MS.gene24610:CDS |
| GGAGGAAGCATTGGTCTAAT+GGG | 0.451429 | 1.2:-49096850 | MS.gene24610:CDS |
| TCTCTAGGCATGAGTGTCTT+GGG | 0.451553 | 1.2:+49096642 | None:intergenic |
| CAATTCATTTCCAAGTTCAA+TGG | 0.462751 | 1.2:+49097329 | None:intergenic |
| GTGGGACTAGTAAATGTTGA+TGG | 0.489170 | 1.2:-49094893 | MS.gene24610:CDS |
| ATTGATCTAGTTTATGGAGG+AGG | 0.513882 | 1.2:-49096868 | MS.gene24610:CDS |
| CAAATACAAATGGAGACAAA+TGG | 0.514050 | 1.2:-49097435 | None:intergenic |
| TAGCTCAGGCTAACCTGGTA+AGG | 0.520557 | 1.2:+49096101 | None:intergenic |
| TGACTTCAAGAAGCTCCTCT+AGG | 0.523303 | 1.2:+49095053 | None:intergenic |
| ACTTGGGATTCATGACAAAC+CGG | 0.526362 | 1.2:-49095017 | MS.gene24610:intron |
| CATCGACAAAGCTGTGGAAG+AGG | 0.532010 | 1.2:-49094846 | MS.gene24610:CDS |
| AGCTTCTTGAAGTCATAACC+TGG | 0.532925 | 1.2:-49095045 | MS.gene24610:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.534440 | 1.2:-49096859 | MS.gene24610:CDS |
| GCGTTGCTTCGAAGTTGAGC+TGG | 0.538596 | 1.2:-49094633 | MS.gene24610:CDS |
| GTTTCACAAGCTGTTCATGA+TGG | 0.539577 | 1.2:-49096823 | MS.gene24610:CDS |
| TTTGCAGCTAACTGGTGAAA+CGG | 0.542234 | 1.2:-49096199 | MS.gene24610:intron |
| GAAGCAACGCCTTCGTGACA+AGG | 0.544836 | 1.2:+49094646 | None:intergenic |
| CTGTAGCAGATATGCATCAA+AGG | 0.549564 | 1.2:-49096161 | MS.gene24610:CDS |
| GACTTCAAGAAGCTCCTCTA+GGG | 0.553887 | 1.2:+49095054 | None:intergenic |
| TCATAACCTGGGCTCAACTT+GGG | 0.556522 | 1.2:-49095033 | MS.gene24610:CDS |
| CTGAAGAGTATGACATCTCA+AGG | 0.559781 | 1.2:-49094585 | MS.gene24610:CDS |
| TAAGAGTGTCAAAGTTCAAG+AGG | 0.560240 | 1.2:-49097407 | MS.gene24610:CDS |
| GCATCAAAGGAAGGCAGAGA+TGG | 0.563589 | 1.2:-49096148 | MS.gene24610:CDS |
| TTCGAAGTTGAGCTGGCAGA+TGG | 0.564883 | 1.2:-49094626 | MS.gene24610:CDS |
| TTCATTCATCGACAAAGCTG+TGG | 0.574795 | 1.2:-49094852 | MS.gene24610:CDS |
| AATATTGATCTAGTTTATGG+AGG | 0.578824 | 1.2:-49096871 | MS.gene24610:CDS |
| TCACAAGCTGTTCATGATGG+TGG | 0.582768 | 1.2:-49096820 | MS.gene24610:CDS |
| ATGAATCCCAAGTTGAGCCC+AGG | 0.585691 | 1.2:+49095027 | None:intergenic |
| ATCGACAAAGCTGTGGAAGA+GGG | 0.594245 | 1.2:-49094845 | MS.gene24610:CDS |
| GATGTCATACTCTTCAGGAT+AGG | 0.595686 | 1.2:+49094591 | None:intergenic |
| CAGCTAACTGGTGAAACGGT+GGG | 0.599390 | 1.2:-49096195 | MS.gene24610:CDS |
| ATGGTGGAAGACATGTCATA+GGG | 0.603354 | 1.2:-49096804 | MS.gene24610:intron |
| GCAGCTAACTGGTGAAACGG+TGG | 0.613685 | 1.2:-49096196 | MS.gene24610:intron |
| CAAGACACTCATGCCTAGAG+AGG | 0.614658 | 1.2:-49096640 | MS.gene24610:intron |
| AAGAGTGTCAAAGTTCAAGA+GGG | 0.616352 | 1.2:-49097406 | MS.gene24610:CDS |
| AGCAGATATGCATCAAAGGA+AGG | 0.629113 | 1.2:-49096157 | MS.gene24610:CDS |
| GCTTCTTGAAGTCATAACCT+GGG | 0.658696 | 1.2:-49095044 | MS.gene24610:CDS |
| GATTATGTTCCTTGTCACGA+AGG | 0.661791 | 1.2:-49094655 | MS.gene24610:CDS |
| TAGGTGCTGATACAATTATG+TGG | 0.681813 | 1.2:+49094801 | None:intergenic |
| AGAGTTAGTGAAGAAACTGG+AGG | 0.710150 | 1.2:-49094771 | MS.gene24610:intron |
| AGGTGGTTATGGGACCCTAG+AGG | 0.728214 | 1.2:-49095068 | MS.gene24610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATGAAAAAAACTTT+AGG | + | chr1.2:49094994-49095013 | None:intergenic | 10.0% |
| !! | TAAAAGTAATAATAAAGAAA+TGG | - | chr1.2:49095624-49095643 | MS.gene24610:intron | 10.0% |
| !! | TGAATTAGTTAATAATATTT+AGG | + | chr1.2:49097046-49097065 | None:intergenic | 10.0% |
| !!! | AAAATCTTATTTATTTTTTG+TGG | - | chr1.2:49094766-49094785 | MS.gene24610:intron | 10.0% |
| !! | AATTTAATGCAAAAAAACAT+AGG | + | chr1.2:49096893-49096912 | None:intergenic | 15.0% |
| !! | ATGAAAAAAGTGAATAATAA+AGG | + | chr1.2:49095476-49095495 | None:intergenic | 15.0% |
| !! | TAACAAACTTAATTACTAAA+AGG | - | chr1.2:49096064-49096083 | MS.gene24610:intron | 15.0% |
| !!! | TGTTAAAGTTATTTTCTTTT+GGG | - | chr1.2:49095577-49095596 | MS.gene24610:intron | 15.0% |
| !!! | TTGTTAAAGTTATTTTCTTT+TGG | - | chr1.2:49095576-49095595 | MS.gene24610:intron | 15.0% |
| !!! | TTTTAGTAATTAAGTTTGTT+AGG | + | chr1.2:49096065-49096084 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCTCAAAAAAGA+AGG | + | chr1.2:49094750-49094769 | None:intergenic | 15.0% |
| !! | ACAAACCATTAAAATTGATT+GGG | + | chr1.2:49095104-49095123 | None:intergenic | 20.0% |
| !! | TCATAAAAATGAAAACTTTG+AGG | + | chr1.2:49095243-49095262 | None:intergenic | 20.0% |
| !! | TTAACTTAAAATACAGAACA+AGG | + | chr1.2:49095531-49095550 | None:intergenic | 20.0% |
| !!! | AAATTTTAGCCAAATATGTT+AGG | + | chr1.2:49096308-49096327 | None:intergenic | 20.0% |
| !!! | AATTTTAGCCAAATATGTTA+GGG | + | chr1.2:49096307-49096326 | None:intergenic | 20.0% |
| !!! | AGAAATATTGATCTAGTTTA+TGG | - | chr1.2:49095134-49095153 | MS.gene24610:intron | 20.0% |
| !!! | ATCAAGTTTGAAATGAAAAA+TGG | + | chr1.2:49095066-49095085 | None:intergenic | 20.0% |
| !!! | CTTATTTATTTTTTGTGGAT+GGG | - | chr1.2:49094771-49094790 | MS.gene24610:intron | 20.0% |
| !!! | TCTTATTTATTTTTTGTGGA+TGG | - | chr1.2:49094770-49094789 | MS.gene24610:intron | 20.0% |
| !!! | TTATTTATTTTTTGTGGATG+GGG | - | chr1.2:49094772-49094791 | MS.gene24610:CDS | 20.0% |
| !!! | TTTTCAAAGACTTTTATTTC+TGG | - | chr1.2:49096525-49096544 | MS.gene24610:intron | 20.0% |
| ! | AAAAAAAATGATCTGACCAT+TGG | - | chr1.2:49096761-49096780 | MS.gene24610:intron | 25.0% |
| ! | AAAATACAGAACAAGGAAAT+AGG | + | chr1.2:49095524-49095543 | None:intergenic | 25.0% |
| ! | AATCATTAATATTGTTGCCA+AGG | - | chr1.2:49096099-49096118 | MS.gene24610:intron | 25.0% |
| ! | AATGTCAAATCTAGTTAAAC+TGG | + | chr1.2:49097082-49097101 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAACAGTATGTA+AGG | + | chr1.2:49094730-49094749 | None:intergenic | 25.0% |
| ! | ATTCCTTTGTATATTTCAGT+TGG | - | chr1.2:49094838-49094857 | MS.gene24610:CDS | 25.0% |
| ! | CACAAACCATTAAAATTGAT+TGG | + | chr1.2:49095105-49095124 | None:intergenic | 25.0% |
| ! | TAGTCAAATAAATATGACAC+TGG | - | chr1.2:49096195-49096214 | MS.gene24610:CDS | 25.0% |
| ! | TATTATGTTTGATTCATCAC+AGG | - | chr1.2:49097331-49097350 | MS.gene24610:CDS | 25.0% |
| ! | TGGCAACAATATTAATGATT+AGG | + | chr1.2:49096099-49096118 | None:intergenic | 25.0% |
| ! | TTCCTTTGTATATTTCAGTT+GGG | - | chr1.2:49094839-49094858 | MS.gene24610:CDS | 25.0% |
| !! | AATATTGATCTAGTTTATGG+AGG | - | chr1.2:49095137-49095156 | MS.gene24610:intron | 25.0% |
| !! | ATACTTTAAAAAGCTGAGAA+AGG | + | chr1.2:49095043-49095062 | None:intergenic | 25.0% |
| !! | ATTTAGGTTCCTTAACAAAA+TGG | + | chr1.2:49097030-49097049 | None:intergenic | 25.0% |
| !! | CTTATCCCAATCAATTTTAA+TGG | - | chr1.2:49095096-49095115 | MS.gene24610:intron | 25.0% |
| !!! | AAAGTTATTTTCTTTTGGGT+AGG | - | chr1.2:49095581-49095600 | MS.gene24610:intron | 25.0% |
| !!! | TCAATTTTAATGGTTTGTGA+AGG | - | chr1.2:49095106-49095125 | MS.gene24610:intron | 25.0% |
| AAAAGAGTTAGTGAAGAAAC+TGG | - | chr1.2:49097234-49097253 | MS.gene24610:intron | 30.0% | |
| AAATGGTACAAGTCAATTAC+CGG | + | chr1.2:49097013-49097032 | None:intergenic | 30.0% | |
| AAATTAGTGACTGTTACAGA+AGG | - | chr1.2:49096574-49096593 | MS.gene24610:intron | 30.0% | |
| AACTTATGCAAATTACATGC+AGG | - | chr1.2:49096920-49096939 | MS.gene24610:intron | 30.0% | |
| AAGAATAGTACACCTTACTT+TGG | - | chr1.2:49095930-49095949 | MS.gene24610:intron | 30.0% | |
| AAGCATTAAAGACTGAGATA+TGG | + | chr1.2:49096032-49096051 | None:intergenic | 30.0% | |
| ACAATATTAATGATTAGGCG+TGG | + | chr1.2:49096094-49096113 | None:intergenic | 30.0% | |
| ACAGTGTATCAAAATTACCT+TGG | + | chr1.2:49096119-49096138 | None:intergenic | 30.0% | |
| AGGAAAGTAGATGCAAAAAA+TGG | + | chr1.2:49096376-49096395 | None:intergenic | 30.0% | |
| ATCAAAACCATGAGTAAGTT+TGG | + | chr1.2:49096420-49096439 | None:intergenic | 30.0% | |
| CAATTCATTTCCAAGTTCAA+TGG | + | chr1.2:49094682-49094701 | None:intergenic | 30.0% | |
| CAGATTCCCTACAATAATTA+TGG | + | chr1.2:49096821-49096840 | None:intergenic | 30.0% | |
| CATTGAACTTGGAAATGAAT+TGG | - | chr1.2:49094680-49094699 | MS.gene24610:intron | 30.0% | |
| CTTAAGGTCATCTAATAAAC+TGG | + | chr1.2:49096858-49096877 | None:intergenic | 30.0% | |
| GTGCATTATGTAATCTAACT+CGG | - | chr1.2:49096693-49096712 | MS.gene24610:intron | 30.0% | |
| TCAAGCACAATAGACTATTA+TGG | + | chr1.2:49095275-49095294 | None:intergenic | 30.0% | |
| TCTCTAATCATCATAGCATT+AGG | + | chr1.2:49096244-49096263 | None:intergenic | 30.0% | |
| TGTGTGCCATAATTATTGTA+GGG | - | chr1.2:49096812-49096831 | MS.gene24610:CDS | 30.0% | |
| TTATTGTAGGGAATCTGTTT+CGG | - | chr1.2:49096824-49096843 | MS.gene24610:CDS | 30.0% | |
| ! | TTCACTAACTCTTTTGATGT+AGG | + | chr1.2:49097229-49097248 | None:intergenic | 30.0% |
| ! | TTTTGTACCAAACTTACTCA+TGG | - | chr1.2:49096410-49096429 | MS.gene24610:intron | 30.0% |
| !! | TGACTTGTACCATTTTGTTA+AGG | - | chr1.2:49097018-49097037 | MS.gene24610:intron | 30.0% |
| !!! | ACTCTTTTGTTTTACTTCAG+TGG | - | chr1.2:49095655-49095674 | MS.gene24610:intron | 30.0% |
| !!! | CTCATGGTTTTGATATAGAA+AGG | - | chr1.2:49096426-49096445 | MS.gene24610:intron | 30.0% |
| !!! | TTTTTTGCATCTACTTTCCT+TGG | - | chr1.2:49096376-49096395 | MS.gene24610:intron | 30.0% |
| AAAGACTGAGATATGGTCAA+TGG | + | chr1.2:49096025-49096044 | None:intergenic | 35.0% | |
| AAATTACATGCAGGTGGTTA+TGG | - | chr1.2:49096929-49096948 | MS.gene24610:intron | 35.0% | |
| AATTACATGCAGGTGGTTAT+GGG | - | chr1.2:49096930-49096949 | MS.gene24610:intron | 35.0% | |
| ACAAAAACGTCATGATTCCA+AGG | + | chr1.2:49096396-49096415 | None:intergenic | 35.0% | |
| ACTTGTCATTCACTCTTTCT+TGG | - | chr1.2:49096616-49096635 | MS.gene24610:intron | 35.0% | |
| AGGATCCAATGGATAAGAAA+TGG | + | chr1.2:49095788-49095807 | None:intergenic | 35.0% | |
| CACTATTTCATGACATGTAC+AGG | + | chr1.2:49096501-49096520 | None:intergenic | 35.0% | |
| CTGTGTGCCATAATTATTGT+AGG | - | chr1.2:49096811-49096830 | MS.gene24610:CDS | 35.0% | |
| CTGTTCCATTTCTTATCCAT+TGG | - | chr1.2:49095780-49095799 | MS.gene24610:intron | 35.0% | |
| CTTGTCATTCACTCTTTCTT+GGG | - | chr1.2:49096617-49096636 | MS.gene24610:intron | 35.0% | |
| GACAAATAAACCAGTGTCAA+TGG | + | chr1.2:49095320-49095339 | None:intergenic | 35.0% | |
| GACCCAACTGAAATATACAA+AGG | + | chr1.2:49094844-49094863 | None:intergenic | 35.0% | |
| GCAAAAAAACATAGGAGAAC+AGG | + | chr1.2:49096885-49096904 | None:intergenic | 35.0% | |
| GTCGTTCGATTTCAAATCAA+TGG | + | chr1.2:49096719-49096738 | None:intergenic | 35.0% | |
| TCTGAAAAACTATGGTTCTC+TGG | - | chr1.2:49096342-49096361 | MS.gene24610:intron | 35.0% | |
| TCTGTAATGCAACCAAAGTA+AGG | + | chr1.2:49095945-49095964 | None:intergenic | 35.0% | |
| TTATGCAAATTACATGCAGG+TGG | - | chr1.2:49096923-49096942 | MS.gene24610:intron | 35.0% | |
| ! | ATTGATCTAGTTTATGGAGG+AGG | - | chr1.2:49095140-49095159 | MS.gene24610:intron | 35.0% |
| ! | GCTTTGACTCTGAAAAACTA+TGG | - | chr1.2:49096334-49096353 | MS.gene24610:intron | 35.0% |
| !! | AAGAGTGTCAAAGTTCAAGA+GGG | - | chr1.2:49094602-49094621 | MS.gene24610:CDS | 35.0% |
| !! | TAAGAGTGTCAAAGTTCAAG+AGG | - | chr1.2:49094601-49094620 | MS.gene24610:CDS | 35.0% |
| !! | TAGGTGCTGATACAATTATG+TGG | + | chr1.2:49097210-49097229 | None:intergenic | 35.0% |
| !! | TGATAACTACTTTTCTTGCC+AGG | + | chr1.2:49094651-49094670 | None:intergenic | 35.0% |
| ACTTGGGATTCATGACAAAC+CGG | - | chr1.2:49096991-49097010 | MS.gene24610:intron | 40.0% | |
| AGAGAGTGACTCTTCAAAAC+TGG | - | chr1.2:49096259-49096278 | MS.gene24610:intron | 40.0% | |
| AGAGTTAGTGAAGAAACTGG+AGG | - | chr1.2:49097237-49097256 | MS.gene24610:intron | 40.0% | |
| AGCAGATATGCATCAAAGGA+AGG | - | chr1.2:49095851-49095870 | MS.gene24610:intron | 40.0% | |
| AGCTTCTTGAAGTCATAACC+TGG | - | chr1.2:49096963-49096982 | MS.gene24610:intron | 40.0% | |
| ATCTCTTTGTCCATTGACAC+TGG | - | chr1.2:49095307-49095326 | MS.gene24610:intron | 40.0% | |
| CTGTAGCAGATATGCATCAA+AGG | - | chr1.2:49095847-49095866 | MS.gene24610:intron | 40.0% | |
| CTTGAGATGTCATACTCTTC+AGG | + | chr1.2:49097425-49097444 | None:intergenic | 40.0% | |
| GATGTCATACTCTTCAGGAT+AGG | + | chr1.2:49097420-49097439 | None:intergenic | 40.0% | |
| GATTATGTTCCTTGTCACGA+AGG | - | chr1.2:49097353-49097372 | MS.gene24610:CDS | 40.0% | |
| GCTTCTTGAAGTCATAACCT+GGG | - | chr1.2:49096964-49096983 | MS.gene24610:intron | 40.0% | |
| GGTGATAAGGGGTCTTAATT+TGG | - | chr1.2:49096671-49096690 | MS.gene24610:intron | 40.0% | |
| GTTTCACAAGCTGTTCATGA+TGG | - | chr1.2:49095185-49095204 | MS.gene24610:intron | 40.0% | |
| TAGCTGCAAAAAGGATCCAA+TGG | + | chr1.2:49095799-49095818 | None:intergenic | 40.0% | |
| TAGGAGAACAGGAACACTTA+AGG | + | chr1.2:49096874-49096893 | None:intergenic | 40.0% | |
| TTCACCAGTTAGCTGCAAAA+AGG | + | chr1.2:49095808-49095827 | None:intergenic | 40.0% | |
| TTCAGTGGCTTATAATGTGC+TGG | - | chr1.2:49095670-49095689 | MS.gene24610:intron | 40.0% | |
| TTCATTCATCGACAAAGCTG+TGG | - | chr1.2:49097156-49097175 | MS.gene24610:intron | 40.0% | |
| TTTGCAGCTAACTGGTGAAA+CGG | - | chr1.2:49095809-49095828 | MS.gene24610:intron | 40.0% | |
| ! | AAGAGGGTTTGTGTCTTTTG+TGG | - | chr1.2:49094618-49094637 | MS.gene24610:CDS | 40.0% |
| ! | ATGGTGGAAGACATGTCATA+GGG | - | chr1.2:49095204-49095223 | MS.gene24610:intron | 40.0% |
| ! | CTGAAGAGTATGACATCTCA+AGG | - | chr1.2:49097423-49097442 | MS.gene24610:CDS | 40.0% |
| ! | CTTTTCTCACATACCTCTCT+AGG | + | chr1.2:49095384-49095403 | None:intergenic | 40.0% |
| ! | GATGCTTTTATTGCCTTACC+AGG | - | chr1.2:49095894-49095913 | MS.gene24610:intron | 40.0% |
| ! | GGTGTACTATTCTTTAGCTC+AGG | + | chr1.2:49095924-49095943 | None:intergenic | 40.0% |
| ! | GTGGGACTAGTAAATGTTGA+TGG | - | chr1.2:49097115-49097134 | MS.gene24610:intron | 40.0% |
| ! | TTTTGTGGATGGGGTGAAAA+TGG | - | chr1.2:49094781-49094800 | MS.gene24610:CDS | 40.0% |
| !! | AAGCATTGGTCTAATGGGTT+CGG | - | chr1.2:49095163-49095182 | MS.gene24610:intron | 40.0% |
| !! | GACCATTGGTTTAGATCGAA+GGG | - | chr1.2:49096775-49096794 | MS.gene24610:intron | 40.0% |
| !! | TGACCATTGGTTTAGATCGA+AGG | - | chr1.2:49096774-49096793 | MS.gene24610:intron | 40.0% |
| AAGAGAGAGAGGGTGATAAG+GGG | - | chr1.2:49096660-49096679 | MS.gene24610:intron | 45.0% | |
| AAGATAGAGGGAAGAGAGAG+AGG | - | chr1.2:49096649-49096668 | MS.gene24610:CDS | 45.0% | |
| ACAATTATGTGGCGCGCATT+TGG | + | chr1.2:49097199-49097218 | None:intergenic | 45.0% | |
| AGATAGAGGGAAGAGAGAGA+GGG | - | chr1.2:49096650-49096669 | MS.gene24610:CDS | 45.0% | |
| AGTGACTGTTACAGAAGGCA+AGG | - | chr1.2:49096579-49096598 | MS.gene24610:intron | 45.0% | |
| ATCGACAAAGCTGTGGAAGA+GGG | - | chr1.2:49097163-49097182 | MS.gene24610:intron | 45.0% | |
| CAAGATGCTGCCATTGAACT+TGG | - | chr1.2:49094669-49094688 | MS.gene24610:intron | 45.0% | |
| CTCTTCCCTCTATCTTGCAA+GGG | + | chr1.2:49096645-49096664 | None:intergenic | 45.0% | |
| GAAGAGAGAGAGGGTGATAA+GGG | - | chr1.2:49096659-49096678 | MS.gene24610:intron | 45.0% | |
| GACCCTTCGATCTAAACCAA+TGG | + | chr1.2:49096780-49096799 | None:intergenic | 45.0% | |
| GACTTCAAGAAGCTCCTCTA+GGG | + | chr1.2:49096957-49096976 | None:intergenic | 45.0% | |
| GCCAAATATGTTAGGGTCTC+AGG | + | chr1.2:49096300-49096319 | None:intergenic | 45.0% | |
| GCCTGAGACCCTAACATATT+TGG | - | chr1.2:49096296-49096315 | MS.gene24610:intron | 45.0% | |
| TCACAAGCTGTTCATGATGG+TGG | - | chr1.2:49095188-49095207 | MS.gene24610:intron | 45.0% | |
| TCATAACCTGGGCTCAACTT+GGG | - | chr1.2:49096975-49096994 | MS.gene24610:intron | 45.0% | |
| TCTCTAGGCATGAGTGTCTT+GGG | + | chr1.2:49095369-49095388 | None:intergenic | 45.0% | |
| TCTCTTCCCTCTATCTTGCA+AGG | + | chr1.2:49096646-49096665 | None:intergenic | 45.0% | |
| TGACTTCAAGAAGCTCCTCT+AGG | + | chr1.2:49096958-49096977 | None:intergenic | 45.0% | |
| TTTGACATTCCACAACTCGC+AGG | - | chr1.2:49097093-49097112 | MS.gene24610:intron | 45.0% | |
| ! | GGATCCTTTTTGCAGCTAAC+TGG | - | chr1.2:49095801-49095820 | MS.gene24610:intron | 45.0% |
| ! | GTCTTTTGTGGAAGTAGTCC+TGG | - | chr1.2:49094630-49094649 | MS.gene24610:CDS | 45.0% |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | - | chr1.2:49095149-49095168 | MS.gene24610:intron | 45.0% |
| ! | TTCTTTAGCTCAGGCTAACC+TGG | + | chr1.2:49095915-49095934 | None:intergenic | 45.0% |
| !! | AGGAGGAAGCATTGGTCTAA+TGG | - | chr1.2:49095157-49095176 | MS.gene24610:intron | 45.0% |
| !! | GATGGTGGAAGACATGTCAT+AGG | - | chr1.2:49095203-49095222 | MS.gene24610:intron | 45.0% |
| !! | GGAGGAAGCATTGGTCTAAT+GGG | - | chr1.2:49095158-49095177 | MS.gene24610:intron | 45.0% |
| !!! | AATATAAATTTTTTGTTTTT+TGG | - | chr1.2:49094931-49094950 | MS.gene24610:intron | 5.0% |
| !!! | ATATTTTTTTTTTATATCTA+TGG | - | chr1.2:49095010-49095029 | MS.gene24610:intron | 5.0% |
| ACATTCCACAACTCGCAGGT+GGG | - | chr1.2:49097097-49097116 | MS.gene24610:intron | 50.0% | |
| CAAGACACTCATGCCTAGAG+AGG | - | chr1.2:49095368-49095387 | MS.gene24610:intron | 50.0% | |
| CAGCTAACTGGTGAAACGGT+GGG | - | chr1.2:49095813-49095832 | MS.gene24610:intron | 50.0% | |
| CATCGACAAAGCTGTGGAAG+AGG | - | chr1.2:49097162-49097181 | MS.gene24610:intron | 50.0% | |
| CTCTCTAGGCATGAGTGTCT+TGG | + | chr1.2:49095370-49095389 | None:intergenic | 50.0% | |
| GCATCAAAGGAAGGCAGAGA+TGG | - | chr1.2:49095860-49095879 | MS.gene24610:intron | 50.0% | |
| GGAAGAGAGAGAGGGTGATA+AGG | - | chr1.2:49096658-49096677 | MS.gene24610:intron | 50.0% | |
| GGGATCCCTTGCAAGATAGA+GGG | - | chr1.2:49096637-49096656 | MS.gene24610:intron | 50.0% | |
| GTCATAACCTGGGCTCAACT+TGG | - | chr1.2:49096974-49096993 | MS.gene24610:intron | 50.0% | |
| TAGCTCAGGCTAACCTGGTA+AGG | + | chr1.2:49095910-49095929 | None:intergenic | 50.0% | |
| TGGGATCCCTTGCAAGATAG+AGG | - | chr1.2:49096636-49096655 | MS.gene24610:intron | 50.0% | |
| TTAGGGTCTCAGGCAAAGTC+AGG | + | chr1.2:49096290-49096309 | None:intergenic | 50.0% | |
| TTCGAAGTTGAGCTGGCAGA+TGG | - | chr1.2:49097382-49097401 | MS.gene24610:CDS | 50.0% | |
| ! | ATGAATCCCAAGTTGAGCCC+AGG | + | chr1.2:49096984-49097003 | None:intergenic | 50.0% |
| AGGTGGTTATGGGACCCTAG+AGG | - | chr1.2:49096940-49096959 | MS.gene24610:intron | 55.0% | |
| GAAGCAACGCCTTCGTGACA+AGG | + | chr1.2:49097365-49097384 | None:intergenic | 55.0% | |
| GACATTCCACAACTCGCAGG+TGG | - | chr1.2:49097096-49097115 | MS.gene24610:intron | 55.0% | |
| GCAGCTAACTGGTGAAACGG+TGG | - | chr1.2:49095812-49095831 | MS.gene24610:intron | 55.0% | |
| GCGTTGCTTCGAAGTTGAGC+TGG | - | chr1.2:49097375-49097394 | MS.gene24610:CDS | 55.0% | |
| CTAGTCCCACCTGCGAGTTG+TGG | + | chr1.2:49097105-49097124 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 49094582 | 49097448 | 49094582 | ID=MS.gene24610 |
| chr1.2 | mRNA | 49094582 | 49097448 | 49094582 | ID=MS.gene24610.t1;Parent=MS.gene24610 |
| chr1.2 | exon | 49097329 | 49097448 | 49097329 | ID=MS.gene24610.t1.exon1;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49097329 | 49097448 | 49097329 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| chr1.2 | exon | 49096805 | 49096902 | 49096805 | ID=MS.gene24610.t1.exon2;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49096805 | 49096902 | 49096805 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| chr1.2 | exon | 49096641 | 49096671 | 49096641 | ID=MS.gene24610.t1.exon3;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49096641 | 49096671 | 49096641 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| chr1.2 | exon | 49096115 | 49096214 | 49096115 | ID=MS.gene24610.t1.exon4;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49096115 | 49096214 | 49096115 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| chr1.2 | exon | 49095018 | 49095088 | 49095018 | ID=MS.gene24610.t1.exon5;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49095018 | 49095088 | 49095018 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| chr1.2 | exon | 49094772 | 49094915 | 49094772 | ID=MS.gene24610.t1.exon6;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49094772 | 49094915 | 49094772 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| chr1.2 | exon | 49094582 | 49094677 | 49094582 | ID=MS.gene24610.t1.exon7;Parent=MS.gene24610.t1 |
| chr1.2 | CDS | 49094582 | 49094677 | 49094582 | ID=cds.MS.gene24610.t1;Parent=MS.gene24610.t1 |
| Gene Sequence |
| Protein sequence |
