Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034799.t1 | XP_013467854.1 | 98.1 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 3.10E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034799.t1 | Q8GW29 | 83.6 | 214 | 33 | 1 | 1 | 212 | 1 | 214 | 3.7e-98 | 359.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034799.t1 | A0A072VJY2 | 98.1 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 2.2e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034799 | MS.gene016180 | PPI |
| MS.gene034799 | MS.gene007521 | PPI |
| MS.gene034799 | MS.gene007426 | PPI |
| MS.gene034799 | MS.gene028695 | PPI |
| MS.gene034799 | MS.gene08691 | PPI |
| MS.gene08753 | MS.gene034799 | PPI |
| MS.gene034799 | MS.gene52386 | PPI |
| MS.gene33028 | MS.gene034799 | PPI |
| MS.gene034799 | MS.gene20068 | PPI |
| MS.gene24610 | MS.gene034799 | PPI |
| MS.gene051577 | MS.gene034799 | PPI |
| MS.gene22428 | MS.gene034799 | PPI |
| MS.gene034799 | MS.gene029824 | PPI |
| MS.gene007681 | MS.gene034799 | PPI |
| MS.gene31266 | MS.gene034799 | PPI |
| MS.gene034799 | MS.gene016181 | PPI |
| MS.gene050128 | MS.gene034799 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034799.t1 | MTR_1g057020 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 1.34e-153 | 424 |
| MS.gene034799.t1 | MTR_2g094790 | 75.385 | 195 | 48 | 0 | 6 | 200 | 10 | 204 | 2.19e-113 | 322 |
| MS.gene034799.t1 | MTR_7g101290 | 72.727 | 209 | 55 | 1 | 6 | 212 | 11 | 219 | 6.07e-113 | 322 |
| MS.gene034799.t1 | MTR_0041s0100 | 72.727 | 209 | 55 | 1 | 6 | 212 | 11 | 219 | 6.07e-113 | 322 |
| MS.gene034799.t1 | MTR_1g064260 | 71.770 | 209 | 57 | 1 | 6 | 212 | 10 | 218 | 5.02e-112 | 319 |
| MS.gene034799.t1 | MTR_3g113710 | 76.020 | 196 | 47 | 0 | 5 | 200 | 11 | 206 | 5.99e-111 | 317 |
| MS.gene034799.t1 | MTR_4g058740 | 75.648 | 193 | 47 | 0 | 8 | 200 | 12 | 204 | 3.42e-110 | 314 |
| MS.gene034799.t1 | MTR_3g113710 | 78.571 | 182 | 39 | 0 | 5 | 186 | 11 | 192 | 1.54e-106 | 306 |
| MS.gene034799.t1 | MTR_1g015830 | 62.911 | 213 | 78 | 1 | 1 | 212 | 1 | 213 | 6.60e-99 | 286 |
| MS.gene034799.t1 | MTR_1g064260 | 72.222 | 162 | 43 | 1 | 53 | 212 | 1 | 162 | 1.10e-83 | 246 |
| MS.gene034799.t1 | MTR_3g113710 | 77.863 | 131 | 29 | 0 | 70 | 200 | 10 | 140 | 9.62e-71 | 213 |
| MS.gene034799.t1 | MTR_1g015830 | 62.112 | 161 | 60 | 1 | 53 | 212 | 1 | 161 | 5.24e-70 | 211 |
| MS.gene034799.t1 | MTR_1g024145 | 71.845 | 103 | 29 | 0 | 24 | 126 | 150 | 252 | 3.84e-48 | 158 |
| MS.gene034799.t1 | MTR_1g024850 | 67.143 | 70 | 23 | 0 | 6 | 75 | 14 | 83 | 9.04e-32 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034799.t1 | AT5G06300 | 83.645 | 214 | 33 | 1 | 1 | 212 | 1 | 214 | 5.03e-131 | 367 |
| MS.gene034799.t1 | AT2G35990 | 75.980 | 204 | 49 | 0 | 1 | 204 | 1 | 204 | 1.85e-118 | 335 |
| MS.gene034799.t1 | AT2G37210 | 75.122 | 205 | 50 | 1 | 5 | 208 | 10 | 214 | 1.91e-115 | 328 |
| MS.gene034799.t1 | AT3G53450 | 75.122 | 205 | 50 | 1 | 5 | 208 | 10 | 214 | 1.60e-114 | 325 |
| MS.gene034799.t1 | AT2G28305 | 71.090 | 211 | 60 | 1 | 3 | 212 | 2 | 212 | 9.10e-113 | 321 |
| MS.gene034799.t1 | AT2G37210 | 66.812 | 229 | 51 | 2 | 5 | 208 | 10 | 238 | 2.13e-109 | 313 |
| MS.gene034799.t1 | AT2G28305 | 77.473 | 182 | 41 | 0 | 3 | 184 | 2 | 183 | 5.92e-107 | 306 |
| MS.gene034799.t1 | AT5G03270 | 72.487 | 189 | 52 | 0 | 2 | 190 | 12 | 200 | 4.33e-103 | 296 |
| MS.gene034799.t1 | AT4G35190 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 9.78e-102 | 294 |
| MS.gene034799.t1 | AT5G03270 | 73.224 | 183 | 49 | 0 | 2 | 184 | 12 | 194 | 3.67e-100 | 288 |
| MS.gene034799.t1 | AT4G35190 | 72.283 | 184 | 51 | 0 | 1 | 184 | 1 | 184 | 3.35e-98 | 284 |
| MS.gene034799.t1 | AT5G11950 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.65e-92 | 269 |
| MS.gene034799.t1 | AT5G11950 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.65e-92 | 269 |
| MS.gene034799.t1 | AT5G11950 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.65e-92 | 269 |
| MS.gene034799.t1 | AT2G35990 | 75.658 | 152 | 37 | 0 | 53 | 204 | 1 | 152 | 1.00e-84 | 248 |
| MS.gene034799.t1 | AT2G35990 | 75.658 | 152 | 37 | 0 | 53 | 204 | 1 | 152 | 1.00e-84 | 248 |
| MS.gene034799.t1 | AT2G28305 | 76.087 | 138 | 33 | 0 | 3 | 140 | 2 | 139 | 1.37e-78 | 233 |
| MS.gene034799.t1 | AT5G11950 | 60.377 | 159 | 62 | 1 | 53 | 210 | 1 | 159 | 3.22e-66 | 201 |
| MS.gene034799.t1 | AT5G26140 | 49.650 | 143 | 50 | 1 | 80 | 200 | 6 | 148 | 9.86e-40 | 134 |
| MS.gene034799.t1 | AT5G26140 | 48.062 | 129 | 45 | 1 | 94 | 200 | 1 | 129 | 1.37e-32 | 115 |
| MS.gene034799.t1 | AT5G26140 | 51.020 | 98 | 48 | 0 | 103 | 200 | 17 | 114 | 4.03e-28 | 103 |
Find 0 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAT+AGG | - | 8685:27894-27913 | None:intergenic | 0.0% |
| !!! | AAAATAAAATTAAAAAATTT+TGG | - | 8685:27925-27944 | None:intergenic | 0.0% |
| !!! | AAATAAAATTAAAAAATTTT+GGG | - | 8685:27924-27943 | None:intergenic | 0.0% |
| !! | GAAAAAATAAAAATAAACAA+AGG | - | 8685:27517-27536 | None:intergenic | 10.0% |
| !!! | ATGTTTTAGTTTTTTTTTTT+GGG | + | 8685:30500-30519 | MS.gene034799:intron | 10.0% |
| !!! | TATGTTTTAGTTTTTTTTTT+TGG | + | 8685:30499-30518 | MS.gene034799:intron | 10.0% |
| !!! | TTAAATTTTACTTGTATTTT+AGG | - | 8685:29914-29933 | None:intergenic | 10.0% |
| !! | AAATTTACTATATACTAATG+TGG | + | 8685:28738-28757 | MS.gene034799:intron | 15.0% |
| !! | ATAAATAAAAAAGAGTAGTA+TGG | - | 8685:29871-29890 | None:intergenic | 15.0% |
| !! | ATTGAAATCATTAATTTCTT+AGG | - | 8685:28597-28616 | None:intergenic | 15.0% |
| !! | TTGAAATCATTAATTTCTTA+GGG | - | 8685:28596-28615 | None:intergenic | 15.0% |
| !! | TTTGTTAATAAAATATATGG+TGG | + | 8685:29287-29306 | MS.gene034799:intron | 15.0% |
| !!! | ACAAGACAAAAATATTTTAA+TGG | - | 8685:29101-29120 | None:intergenic | 15.0% |
| !!! | ATAAAGACATTTTTTTTGTA+AGG | - | 8685:27355-27374 | None:intergenic | 15.0% |
| !!! | ATTGTTGAGTTTTTATATAA+AGG | + | 8685:28781-28800 | MS.gene034799:intron | 15.0% |
| !!! | ATTTTATAAAGTAGGATATT+AGG | - | 8685:30294-30313 | None:intergenic | 15.0% |
| !!! | CTAGTTTGTTTAATTATAAA+AGG | - | 8685:30227-30246 | None:intergenic | 15.0% |
| !!! | TGATTCATATTTTATAAAGT+AGG | - | 8685:30302-30321 | None:intergenic | 15.0% |
| !!! | TTGTTGAGTTTTTATATAAA+GGG | + | 8685:28782-28801 | MS.gene034799:intron | 15.0% |
| !! | ACAAAAAAAATATGAACATG+AGG | - | 8685:27450-27469 | None:intergenic | 20.0% |
| !! | ATAAAAATCATGAAAGATTG+TGG | - | 8685:27854-27873 | None:intergenic | 20.0% |
| !! | ATATACTAATGTGGTTAATT+TGG | + | 8685:28747-28766 | MS.gene034799:intron | 20.0% |
| !! | ATTTCAATGTAAGACATTAT+GGG | + | 8685:28609-28628 | MS.gene034799:intron | 20.0% |
| !! | TAAAAATCATGAAAGATTGT+GGG | - | 8685:27853-27872 | None:intergenic | 20.0% |
| !! | TATGTCTTATGATAACAAAT+TGG | - | 8685:30025-30044 | None:intergenic | 20.0% |
| !! | TATTGAATATAAAGTGAAGA+TGG | - | 8685:31340-31359 | None:intergenic | 20.0% |
| !! | TCTACAAAAATTAATGTATC+TGG | + | 8685:29934-29953 | MS.gene034799:intron | 20.0% |
| !! | TTATGTCTCTATTATAACTT+TGG | - | 8685:30123-30142 | None:intergenic | 20.0% |
| !!! | AAAACAATGGTTTTTAAACA+TGG | - | 8685:30447-30466 | None:intergenic | 20.0% |
| !!! | ATTTTACTTGTATTTTAGGA+CGG | - | 8685:29910-29929 | None:intergenic | 20.0% |
| !!! | ATTTTGTGTATTTTCAACTA+CGG | - | 8685:28398-28417 | None:intergenic | 20.0% |
| !!! | CATCATATTTTGATGTTAAA+TGG | - | 8685:28429-28448 | None:intergenic | 20.0% |
| !!! | GTAACATAAGTTGATATATT+TGG | - | 8685:29976-29995 | None:intergenic | 20.0% |
| !!! | TCATGTTCATATTTTTTTTG+TGG | + | 8685:27449-27468 | MS.gene034799:intron | 20.0% |
| !!! | TCTTGTTATTTTGAAACATT+AGG | + | 8685:29768-29787 | MS.gene034799:intron | 20.0% |
| !!! | TGTTGAGTTTTTATATAAAG+GGG | + | 8685:28783-28802 | MS.gene034799:intron | 20.0% |
| !!! | TTGTGTATAACTTTTACTTA+TGG | + | 8685:28824-28843 | MS.gene034799:intron | 20.0% |
| !!! | TTTTATAAAGTTCCAAATCT+AGG | + | 8685:27548-27567 | MS.gene034799:intron | 20.0% |
| ! | AAACCAAATCAAAGTTTAAG+AGG | + | 8685:27166-27185 | MS.gene034799:CDS | 25.0% |
| ! | AATCCTCTTAAACTTTGATT+TGG | - | 8685:27172-27191 | None:intergenic | 25.0% |
| ! | AATTGCTGGAAATTATTACT+TGG | + | 8685:29811-29830 | MS.gene034799:CDS | 25.0% |
| ! | ACATGAAAAGATAGTACTTT+AGG | + | 8685:30644-30663 | MS.gene034799:intron | 25.0% |
| ! | ATAAAATATTGGTAGAGTGT+GGG | + | 8685:28637-28656 | MS.gene034799:intron | 25.0% |
| ! | ATACATATTGCTAAAACAAG+TGG | + | 8685:31429-31448 | MS.gene034799:intron | 25.0% |
| ! | ATTGCTGGAAATTATTACTT+GGG | + | 8685:29812-29831 | MS.gene034799:CDS | 25.0% |
| ! | CAAAAAACCAATAAAGTTGT+TGG | + | 8685:30813-30832 | MS.gene034799:intron | 25.0% |
| ! | CTATAACCAAAGAAGTAAAA+CGG | - | 8685:30055-30074 | None:intergenic | 25.0% |
| ! | CTTAAGATACGTAAAAACAA+TGG | - | 8685:30460-30479 | None:intergenic | 25.0% |
| ! | CTTTGTATCATTACACTATA+CGG | + | 8685:27802-27821 | MS.gene034799:intron | 25.0% |
| ! | GACTAATGATGTATGTTATA+TGG | + | 8685:29128-29147 | MS.gene034799:intron | 25.0% |
| ! | GATTTCAATGTAAGACATTA+TGG | + | 8685:28608-28627 | MS.gene034799:intron | 25.0% |
| ! | TAAGCATGATACATAACATT+AGG | + | 8685:30566-30585 | MS.gene034799:intron | 25.0% |
| ! | TACATATTGCTAAAACAAGT+GGG | + | 8685:31430-31449 | MS.gene034799:intron | 25.0% |
| ! | TCTGTAAAAAATAAGCCAAA+AGG | - | 8685:28888-28907 | None:intergenic | 25.0% |
| ! | TTACTTCTTTGGTTATAGTT+GGG | + | 8685:30057-30076 | MS.gene034799:intron | 25.0% |
| ! | TTTACTTCTTTGGTTATAGT+TGG | + | 8685:30056-30075 | MS.gene034799:intron | 25.0% |
| ! | TTTCAATGTAAGACATTATG+GGG | + | 8685:28610-28629 | MS.gene034799:intron | 25.0% |
| !! | ATAGAGATTGATTGATTTAG+TGG | - | 8685:27961-27980 | None:intergenic | 25.0% |
| !! | GTTGAGTTTTTATATAAAGG+GGG | + | 8685:28784-28803 | MS.gene034799:intron | 25.0% |
| !! | GTTTGTATTTTCAATGTTGA+AGG | + | 8685:28112-28131 | MS.gene034799:intron | 25.0% |
| !! | TTAGTAATTCACATTTTCGT+CGG | + | 8685:30963-30982 | MS.gene034799:intron | 25.0% |
| !! | TTGAGTTTTTATATAAAGGG+GGG | + | 8685:28785-28804 | MS.gene034799:intron | 25.0% |
| !! | TTTATTGATTGCTAAGAAGT+GGG | + | 8685:28530-28549 | MS.gene034799:intron | 25.0% |
| !!! | CATTTTTAGGAATACTTCAT+CGG | + | 8685:29499-29518 | MS.gene034799:intron | 25.0% |
| !!! | TGTTATTTTGAAACATTAGG+TGG | + | 8685:29771-29790 | MS.gene034799:intron | 25.0% |
| !!! | TTTTATTGATTGCTAAGAAG+TGG | + | 8685:28529-28548 | MS.gene034799:intron | 25.0% |
| !!! | TTTTGAAGACATTGGTTAAA+AGG | + | 8685:28856-28875 | MS.gene034799:intron | 25.0% |
| AAAAAAAAATAGGTAGCCCT+TGG | - | 8685:27884-27903 | None:intergenic | 30.0% | |
| AAAACTAAGATCATGCAAGA+AGG | - | 8685:27641-27660 | None:intergenic | 30.0% | |
| AAAGGAAAAGGCAAAAACAT+TGG | - | 8685:28934-28953 | None:intergenic | 30.0% | |
| AATCTAGGTTAAGATTGTTG+AGG | + | 8685:27563-27582 | MS.gene034799:intron | 30.0% | |
| AATGTATGAAGCCTCTAATA+TGG | - | 8685:29627-29646 | None:intergenic | 30.0% | |
| AATTTCCAGCAATTCTTCAA+GGG | - | 8685:29805-29824 | None:intergenic | 30.0% | |
| ACATTTAGAAGCTTCTATAG+AGG | - | 8685:28685-28704 | None:intergenic | 30.0% | |
| AGATGAATATGTATCCAAGT+TGG | + | 8685:31529-31548 | MS.gene034799:CDS | 30.0% | |
| AGGATATTATCATGTGAAGT+GGG | + | 8685:29705-29724 | MS.gene034799:intron | 30.0% | |
| ATAAACAAAGGAGAAGAAAG+AGG | - | 8685:27505-27524 | None:intergenic | 30.0% | |
| ATAATTGAACCGAAACATGT+GGG | + | 8685:30604-30623 | MS.gene034799:intron | 30.0% | |
| ATATCTTTCTCCCATTCAAA+TGG | - | 8685:30740-30759 | None:intergenic | 30.0% | |
| ATTGTTGTGTTTCATTGACA+AGG | + | 8685:31203-31222 | MS.gene034799:CDS | 30.0% | |
| ATTTAGAAGCTTCTATAGAG+GGG | - | 8685:28683-28702 | None:intergenic | 30.0% | |
| ATTTGGTTAACACATGAAGT+TGG | + | 8685:29735-29754 | MS.gene034799:intron | 30.0% | |
| CAACAATCTTAACCTAGATT+TGG | - | 8685:27563-27582 | None:intergenic | 30.0% | |
| CATAAAATATTGGTAGAGTG+TGG | + | 8685:28636-28655 | MS.gene034799:intron | 30.0% | |
| CATTTAATGTTATGTGAAGC+AGG | + | 8685:31490-31509 | MS.gene034799:intron | 30.0% | |
| CATTTAGAAGCTTCTATAGA+GGG | - | 8685:28684-28703 | None:intergenic | 30.0% | |
| CTACACTAGTAAAACATGAA+AGG | + | 8685:29436-29455 | MS.gene034799:intron | 30.0% | |
| CTATAGAAGCTTCTAAATGT+AGG | + | 8685:28685-28704 | MS.gene034799:intron | 30.0% | |
| GATATATGACGTTAGATTGA+TGG | + | 8685:30710-30729 | MS.gene034799:intron | 30.0% | |
| GTCTATATCTATGTGTTTGT+TGG | + | 8685:28486-28505 | MS.gene034799:intron | 30.0% | |
| TAATTTCCAGCAATTCTTCA+AGG | - | 8685:29806-29825 | None:intergenic | 30.0% | |
| TACTTCTTTGGTTATAGTTG+GGG | + | 8685:30058-30077 | MS.gene034799:intron | 30.0% | |
| TAGGATATTATCATGTGAAG+TGG | + | 8685:29704-29723 | MS.gene034799:intron | 30.0% | |
| TATAATTGAACCGAAACATG+TGG | + | 8685:30603-30622 | MS.gene034799:intron | 30.0% | |
| TATGGGGGATCATAAAATAT+TGG | + | 8685:28626-28645 | MS.gene034799:intron | 30.0% | |
| TGTTGAACTAGCAAAAGAAA+TGG | + | 8685:27245-27264 | MS.gene034799:CDS | 30.0% | |
| TTCAATGTAAGACATTATGG+GGG | + | 8685:28611-28630 | MS.gene034799:intron | 30.0% | |
| ! | AGAGCAATTCACATTTTTGT+CGG | + | 8685:30881-30900 | MS.gene034799:intron | 30.0% |
| ! | CGATGAAGTATTCCTAAAAA+TGG | - | 8685:29501-29520 | None:intergenic | 30.0% |
| ! | GATTTTTATCCTATAGCCAA+GGG | + | 8685:27865-27884 | MS.gene034799:intron | 30.0% |
| ! | TGATTTTTATCCTATAGCCA+AGG | + | 8685:27864-27883 | MS.gene034799:intron | 30.0% |
| ! | TTTGAAACATTAGGTGGATA+TGG | + | 8685:29777-29796 | MS.gene034799:intron | 30.0% |
| !! | AGAAGGATTGATTTGGTTTA+TGG | + | 8685:28140-28159 | MS.gene034799:CDS | 30.0% |
| !! | TAGAAGCTTTTTGAAGACAT+TGG | + | 8685:28848-28867 | MS.gene034799:intron | 30.0% |
| !! | TTGTTTCTTTCTTTCTAGCT+TGG | + | 8685:28044-28063 | MS.gene034799:intron | 30.0% |
| !!! | AGATTGTTTTATTTGCTAGC+TGG | + | 8685:27593-27612 | MS.gene034799:intron | 30.0% |
| !!! | TATATGCCGTTTTACTTCTT+TGG | + | 8685:30046-30065 | MS.gene034799:intron | 30.0% |
| AAAGGACAGCATTAACTCAA+TGG | - | 8685:29205-29224 | None:intergenic | 35.0% | |
| AAGAAACTAACCCAAGAACA+TGG | - | 8685:28223-28242 | None:intergenic | 35.0% | |
| AAGAGTAGTATGGTTCTTAC+CGG | - | 8685:29861-29880 | None:intergenic | 35.0% | |
| AAGATTGTGGGAAATGGTAA+AGG | - | 8685:27841-27860 | None:intergenic | 35.0% | |
| ACTTCTTTGGTTATAGTTGG+GGG | + | 8685:30059-30078 | MS.gene034799:intron | 35.0% | |
| AGAAGCTTCTAAATGTAGGA+AGG | + | 8685:28689-28708 | MS.gene034799:intron | 35.0% | |
| ATTATTACTTGGGCTCAACT+TGG | + | 8685:29822-29841 | MS.gene034799:CDS | 35.0% | |
| ATTCAATACCCCACATGTTT+CGG | - | 8685:30616-30635 | None:intergenic | 35.0% | |
| CTGTATCTGATATGCATCAA+AGG | + | 8685:29353-29372 | MS.gene034799:CDS | 35.0% | |
| CTTGGTTCAATGAAAGTCTT+CGG | - | 8685:29603-29622 | None:intergenic | 35.0% | |
| GAAGCTTCTAAATGTAGGAA+GGG | + | 8685:28690-28709 | MS.gene034799:intron | 35.0% | |
| GATACATATTCATCTTGCTC+AGG | - | 8685:31524-31543 | None:intergenic | 35.0% | |
| GGAAATAAAGCCTTCATCAA+CGG | - | 8685:31229-31248 | None:intergenic | 35.0% | |
| GTATGACATGCATCATAGAT+AGG | - | 8685:30407-30426 | None:intergenic | 35.0% | |
| GTGAAGTGGGATTCTTAATT+TGG | + | 8685:29718-29737 | MS.gene034799:intron | 35.0% | |
| TAATTGAACCGAAACATGTG+GGG | + | 8685:30605-30624 | MS.gene034799:intron | 35.0% | |
| TCATGAAAGATTGTGGGAAA+TGG | - | 8685:27847-27866 | None:intergenic | 35.0% | |
| TCATTAATTTCTTAGGGAGC+AGG | - | 8685:28590-28609 | None:intergenic | 35.0% | |
| TGATGGTTCTCCATTTGAAT+GGG | + | 8685:30727-30746 | MS.gene034799:intron | 35.0% | |
| TTATTACTTGGGCTCAACTT+GGG | + | 8685:29823-29842 | MS.gene034799:CDS | 35.0% | |
| TTGAACCAAGACCATATTAG+AGG | + | 8685:29613-29632 | MS.gene034799:intron | 35.0% | |
| ! | AATGCTTTCTGCACTTTTCT+AGG | + | 8685:27762-27781 | MS.gene034799:intron | 35.0% |
| ! | ACATTTTTGTCGGTAGTCAT+CGG | + | 8685:30891-30910 | MS.gene034799:intron | 35.0% |
| ! | AGAAGAAAGAGGTGTAACAA+GGG | - | 8685:27494-27513 | None:intergenic | 35.0% |
| ! | CTATGTGTTTGTTGGATGAA+AGG | + | 8685:28494-28513 | MS.gene034799:intron | 35.0% |
| ! | GTTAAAAGGTGAATGCCTTT+TGG | + | 8685:28870-28889 | MS.gene034799:intron | 35.0% |
| ! | TTGATGGTTCTCCATTTGAA+TGG | + | 8685:30726-30745 | MS.gene034799:intron | 35.0% |
| ! | TTTTACAGAAAGTTCATGCG+CGG | + | 8685:28899-28918 | MS.gene034799:intron | 35.0% |
| !! | AATATGTATCCAAGTTGGTG+TGG | + | 8685:31534-31553 | MS.gene034799:CDS | 35.0% |
| !! | AGGATTGATTTGGTTTATGG+AGG | + | 8685:28143-28162 | MS.gene034799:CDS | 35.0% |
| !! | ATATGTATCCAAGTTGGTGT+GGG | + | 8685:31535-31554 | MS.gene034799:CDS | 35.0% |
| !! | ATTGATTTGGTTTATGGAGG+TGG | + | 8685:28146-28165 | MS.gene034799:CDS | 35.0% |
| !! | GTGTCGAATTGACCATTTTT+AGG | + | 8685:29486-29505 | MS.gene034799:intron | 35.0% |
| !! | TCTTTCTTTCTAGCTTGGTT+TGG | + | 8685:28049-28068 | MS.gene034799:intron | 35.0% |
| !!! | CTTCATCGGTTTTTGTTTAC+TGG | + | 8685:29513-29532 | MS.gene034799:intron | 35.0% |
| AAAATGGTCAATTCGACACG+TGG | - | 8685:29485-29504 | None:intergenic | 40.0% | |
| AAAGGAAAGCTGAAATGGCT+AGG | + | 8685:29371-29390 | MS.gene034799:CDS | 40.0% | |
| AAATGGTCAATTCGACACGT+GGG | - | 8685:29484-29503 | None:intergenic | 40.0% | |
| AAGAGGATTTGTGTCTACTG+TGG | + | 8685:27183-27202 | MS.gene034799:CDS | 40.0% | |
| AAGTGAAGATGGTTGAGCAA+TGG | - | 8685:31329-31348 | None:intergenic | 40.0% | |
| AATTCCAGAGAGTTCACAAG+AGG | - | 8685:30262-30281 | None:intergenic | 40.0% | |
| ACTCAATGGTTTACCTCTCT+TGG | - | 8685:29191-29210 | None:intergenic | 40.0% | |
| AGAGCATACTCATGTGAAGT+AGG | + | 8685:29685-29704 | MS.gene034799:intron | 40.0% | |
| AGATAACTGGTGACCCTATT+GGG | + | 8685:29320-29339 | MS.gene034799:intron | 40.0% | |
| ATCCACATGTGGACCATATA+TGG | + | 8685:29546-29565 | MS.gene034799:intron | 40.0% | |
| CAAAGTGCATGCAAGTGAAA+AGG | - | 8685:28952-28971 | None:intergenic | 40.0% | |
| CAATGTTGAAGGTTGAGAGA+AGG | + | 8685:28123-28142 | MS.gene034799:intron | 40.0% | |
| CCAAGATTTCATACCAGGAA+GGG | - | 8685:29416-29435 | None:intergenic | 40.0% | |
| CCAATAAAGTTGTTGGTCGA+TGG | + | 8685:30820-30839 | MS.gene034799:intron | 40.0% | |
| CCATCGACCAACAACTTTAT+TGG | - | 8685:30823-30842 | None:intergenic | 40.0% | |
| GATCTTATTGCAACGAGCAA+AGG | - | 8685:29223-29242 | None:intergenic | 40.0% | |
| GCATCAAAGGAAAGCTGAAA+TGG | + | 8685:29366-29385 | MS.gene034799:CDS | 40.0% | |
| GCATGCAAGTGAAAAGGAAA+AGG | - | 8685:28946-28965 | None:intergenic | 40.0% | |
| GGTTGAGAGAAGGATTGATT+TGG | + | 8685:28133-28152 | MS.gene034799:intron | 40.0% | |
| GTTTATGCAGTGTTATCCCT+AGG | + | 8685:29156-29175 | MS.gene034799:intron | 40.0% | |
| GTTTCTCAAGCAGTTCATGA+TGG | + | 8685:28191-28210 | MS.gene034799:CDS | 40.0% | |
| TAACTAGAGACATGCCTGAA+AGG | + | 8685:30162-30181 | MS.gene034799:intron | 40.0% | |
| TAATCCCCTAACCAATTCCT+TGG | - | 8685:31289-31308 | None:intergenic | 40.0% | |
| TCACATGGCAACTTCTGATT+CGG | - | 8685:31582-31601 | None:intergenic | 40.0% | |
| TCATACCAGCATTAATGCAC+TGG | + | 8685:28351-28370 | MS.gene034799:intron | 40.0% | |
| TCATAGATAGGAGGCAAAGT+TGG | - | 8685:30395-30414 | None:intergenic | 40.0% | |
| TGAAGCCTCTAATATGGTCT+TGG | - | 8685:29621-29640 | None:intergenic | 40.0% | |
| TGACATGCATCATAGATAGG+AGG | - | 8685:30404-30423 | None:intergenic | 40.0% | |
| TGGTCGAAAATGCAGATAAC+TGG | + | 8685:29307-29326 | MS.gene034799:intron | 40.0% | |
| TGTAGCCAAGATTTCATACC+AGG | - | 8685:29421-29440 | None:intergenic | 40.0% | |
| TTATTCCATTCCCACCTTTC+AGG | - | 8685:30179-30198 | None:intergenic | 40.0% | |
| TTTACAGAAAGTTCATGCGC+GGG | + | 8685:28900-28919 | MS.gene034799:intron | 40.0% | |
| ! | ATAGGAGGCAAAGTTGGTTA+AGG | - | 8685:30389-30408 | None:intergenic | 40.0% |
| ! | GAGAAGAAAGAGGTGTAACA+AGG | - | 8685:27495-27514 | None:intergenic | 40.0% |
| ! | GATTTTACCAGATCCACATG+TGG | + | 8685:29535-29554 | MS.gene034799:intron | 40.0% |
| !! | TGAAGGCTTTATTTCCCCAA+AGG | + | 8685:31233-31252 | MS.gene034799:CDS | 40.0% |
| AATAGGTAGCCCTTGGCTAT+AGG | - | 8685:27877-27896 | None:intergenic | 45.0% | |
| AATTTCTTAGGGAGCAGGCA+TGG | - | 8685:28585-28604 | None:intergenic | 45.0% | |
| ACAGCAGCTTCTTGGTAAGT+AGG | - | 8685:27228-27247 | None:intergenic | 45.0% | |
| ACAGCCAAGGAATTGGTTAG+GGG | + | 8685:31282-31301 | MS.gene034799:CDS | 45.0% | |
| ATATGGTCCACATGTGGATC+TGG | - | 8685:29545-29564 | None:intergenic | 45.0% | |
| ATTTCTTAGGGAGCAGGCAT+GGG | - | 8685:28584-28603 | None:intergenic | 45.0% | |
| CAACAACTGTTGTAGCAGAC+CGG | - | 8685:29573-29592 | None:intergenic | 45.0% | |
| CACAGCCAAGGAATTGGTTA+GGG | + | 8685:31281-31300 | MS.gene034799:CDS | 45.0% | |
| CACATGGCAACTTCTGATTC+GGG | - | 8685:31581-31600 | None:intergenic | 45.0% | |
| CAGATAACTGGTGACCCTAT+TGG | + | 8685:29319-29338 | MS.gene034799:intron | 45.0% | |
| CATGTGGACCATATATGGAC+CGG | + | 8685:29551-29570 | MS.gene034799:intron | 45.0% | |
| CCCTTCCTGGTATGAAATCT+TGG | + | 8685:29413-29432 | MS.gene034799:intron | 45.0% | |
| CTAGTTCAACAGCAGCTTCT+TGG | - | 8685:27236-27255 | None:intergenic | 45.0% | |
| GATAACTGGTGACCCTATTG+GGG | + | 8685:29321-29340 | MS.gene034799:intron | 45.0% | |
| GCCAAGATTTCATACCAGGA+AGG | - | 8685:29417-29436 | None:intergenic | 45.0% | |
| GGAATTGGTTAGGGGATTAG+AGG | + | 8685:31290-31309 | MS.gene034799:CDS | 45.0% | |
| GTCCATATATGGTCCACATG+TGG | - | 8685:29551-29570 | None:intergenic | 45.0% | |
| GTGGGTCTATTGAATGTGGA+TGG | + | 8685:31168-31187 | MS.gene034799:CDS | 45.0% | |
| TAGAGACATGCCTGAAAGGT+GGG | + | 8685:30166-30185 | MS.gene034799:intron | 45.0% | |
| TCTACTGTGGTAGCAGTTCA+GGG | + | 8685:27196-27215 | MS.gene034799:CDS | 45.0% | |
| TCTCAAGCAGTTCATGATGG+TGG | + | 8685:28194-28213 | MS.gene034799:CDS | 45.0% | |
| TCTTTCTTCCCACACCAACT+TGG | - | 8685:31546-31565 | None:intergenic | 45.0% | |
| TGGAACCCTTGAAGAATTGC+TGG | + | 8685:29797-29816 | MS.gene034799:CDS | 45.0% | |
| ! | ATTGACAAGGCCGTTGATGA+AGG | + | 8685:31216-31235 | MS.gene034799:CDS | 45.0% |
| ! | GTTTATGGAGGTGGTAGTGT+GGG | + | 8685:28155-28174 | MS.gene034799:CDS | 45.0% |
| !! | ACGGAGTTCTGAGTTCTGAT+GGG | - | 8685:28379-28398 | None:intergenic | 45.0% |
| !! | TACGGAGTTCTGAGTTCTGA+TGG | - | 8685:28380-28399 | None:intergenic | 45.0% |
| !!! | GATTTTTTTTTTATATTTTA+TGG | + | 8685:27377-27396 | MS.gene034799:intron | 5.0% |
| !!! | TAATTTGTTAATAAAATATA+TGG | + | 8685:29284-29303 | MS.gene034799:intron | 5.0% |
| !!! | TTTTTTCTTTTTAAATTATT+CGG | + | 8685:30353-30372 | MS.gene034799:intron | 5.0% |
| ACAGCTCTCACTTCCCCAAT+AGG | - | 8685:29337-29356 | None:intergenic | 50.0% | |
| ACATGCCTGAAAGGTGGGAA+TGG | + | 8685:30171-30190 | MS.gene034799:intron | 50.0% | |
| ACGATAATGCGACGTGCCTT+TGG | - | 8685:31252-31271 | None:intergenic | 50.0% | |
| ACTTGGGATCCACAGCAAAC+CGG | + | 8685:29839-29858 | MS.gene034799:CDS | 50.0% | |
| AGCATCCACAGCCAAGGAAT+TGG | + | 8685:31275-31294 | MS.gene034799:CDS | 50.0% | |
| CAGCTCTCACTTCCCCAATA+GGG | - | 8685:29336-29355 | None:intergenic | 50.0% | |
| CCACAGCCAAGGAATTGGTT+AGG | + | 8685:31280-31299 | MS.gene034799:CDS | 50.0% | |
| CCTAACCAATTCCTTGGCTG+TGG | - | 8685:31283-31302 | None:intergenic | 50.0% | |
| CGATAATGCGACGTGCCTTT+GGG | - | 8685:31251-31270 | None:intergenic | 50.0% | |
| CTAGAGACATGCCTGAAAGG+TGG | + | 8685:30165-30184 | MS.gene034799:intron | 50.0% | |
| CTCTTGGCATGAGACTCCTA+GGG | - | 8685:29175-29194 | None:intergenic | 50.0% | |
| CTTGCCTCTTGTGAACTCTC+TGG | + | 8685:30255-30274 | MS.gene034799:intron | 50.0% | |
| GAAAGCTGAAATGGCTAGGC+AGG | + | 8685:29375-29394 | MS.gene034799:CDS | 50.0% | |
| GAAAGTTCATGCGCGGGAAT+TGG | + | 8685:28906-28925 | MS.gene034799:intron | 50.0% | |
| GATAATGCGACGTGCCTTTG+GGG | - | 8685:31250-31269 | None:intergenic | 50.0% | |
| GATGCATTCATTGCCCTTCC+TGG | + | 8685:29400-29419 | MS.gene034799:CDS | 50.0% | |
| GCAGGTGGGTCTATTGAATG+TGG | + | 8685:31164-31183 | MS.gene034799:intron | 50.0% | |
| GGGATCCAGTGCATTAATGC+TGG | - | 8685:28359-28378 | None:intergenic | 50.0% | |
| GTAGCAGACCGGTCCATATA+TGG | - | 8685:29562-29581 | None:intergenic | 50.0% | |
| GTCTACTGTGGTAGCAGTTC+AGG | + | 8685:27195-27214 | MS.gene034799:CDS | 50.0% | |
| TAGGAGTCTCATGCCAAGAG+AGG | + | 8685:29175-29194 | MS.gene034799:CDS | 50.0% | |
| TCTCTTGGCATGAGACTCCT+AGG | - | 8685:29176-29195 | None:intergenic | 50.0% | |
| ! | GGTTTATGGAGGTGGTAGTG+TGG | + | 8685:28154-28173 | MS.gene034799:CDS | 50.0% |
| !! | ATGGTGGACGCCATGTTCTT+GGG | + | 8685:28210-28229 | MS.gene034799:CDS | 50.0% |
| !! | TGGTTCTTACCGGTTTGCTG+TGG | - | 8685:29851-29870 | None:intergenic | 50.0% |
| GTCAATTCGACACGTGGGCT+CGG | - | 8685:29479-29498 | None:intergenic | 55.0% | |
| ! | AGGTGGTAGTGTGGGTCTGA+TGG | + | 8685:28163-28182 | MS.gene034799:CDS | 55.0% |
| ! | GGTGGTAGTGTGGGTCTGAT+GGG | + | 8685:28164-28183 | MS.gene034799:CDS | 55.0% |
| !! | GATGGTGGACGCCATGTTCT+TGG | + | 8685:28209-28228 | MS.gene034799:CDS | 55.0% |
| CGTGTCAGCATCCACAGCCA+AGG | + | 8685:31269-31288 | MS.gene034799:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8685 | gene | 27159 | 31601 | 27159 | ID=MS.gene034799 |
| 8685 | mRNA | 27159 | 31601 | 27159 | ID=MS.gene034799.t1;Parent=MS.gene034799 |
| 8685 | exon | 27159 | 27266 | 27159 | ID=MS.gene034799.t1.exon1;Parent=MS.gene034799.t1 |
| 8685 | CDS | 27159 | 27266 | 27159 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| 8685 | exon | 28134 | 28231 | 28134 | ID=MS.gene034799.t1.exon2;Parent=MS.gene034799.t1 |
| 8685 | CDS | 28134 | 28231 | 28134 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| 8685 | exon | 29166 | 29196 | 29166 | ID=MS.gene034799.t1.exon3;Parent=MS.gene034799.t1 |
| 8685 | CDS | 29166 | 29196 | 29166 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| 8685 | exon | 29322 | 29421 | 29322 | ID=MS.gene034799.t1.exon4;Parent=MS.gene034799.t1 |
| 8685 | CDS | 29322 | 29421 | 29322 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| 8685 | exon | 29790 | 29860 | 29790 | ID=MS.gene034799.t1.exon5;Parent=MS.gene034799.t1 |
| 8685 | CDS | 29790 | 29860 | 29790 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| 8685 | exon | 31168 | 31311 | 31168 | ID=MS.gene034799.t1.exon6;Parent=MS.gene034799.t1 |
| 8685 | CDS | 31168 | 31311 | 31168 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| 8685 | exon | 31512 | 31601 | 31512 | ID=MS.gene034799.t1.exon7;Parent=MS.gene034799.t1 |
| 8685 | CDS | 31512 | 31601 | 31512 | ID=cds.MS.gene034799.t1;Parent=MS.gene034799.t1 |
| Gene Sequence |
| Protein sequence |
