Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20068.t1 | XP_013443105.1 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20068.t1 | Q8L8B8 | 87.0 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 1.9e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20068.t1 | A0A072TU87 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene20068 | 0.820045 | 8.44E-53 | -1.69E-46 |
| MS.gene051255 | MS.gene20068 | 0.807825 | 4.18E-50 | -1.69E-46 |
| MS.gene051360 | MS.gene20068 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene20068 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene20068 | 0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene056410 | MS.gene20068 | 0.834381 | 3.10E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene20068 | 0.810957 | 8.90E-51 | -1.69E-46 |
| MS.gene056611 | MS.gene20068 | 0.816444 | 5.51E-52 | -1.69E-46 |
| MS.gene056931 | MS.gene20068 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene056933 | MS.gene20068 | 0.803377 | 3.59E-49 | -1.69E-46 |
| MS.gene058459 | MS.gene20068 | 0.816689 | 4.86E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene20068 | 0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene059711 | MS.gene20068 | 0.837876 | 4.01E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene20068 | 0.833046 | 6.68E-56 | -1.69E-46 |
| MS.gene060800 | MS.gene20068 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene060801 | MS.gene20068 | 0.801558 | 8.51E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene20068 | 0.836675 | 8.15E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24610 | MS.gene20068 | PPI |
| MS.gene051577 | MS.gene20068 | PPI |
| MS.gene22428 | MS.gene20068 | PPI |
| MS.gene20068 | MS.gene028695 | PPI |
| MS.gene20068 | MS.gene055648 | PPI |
| MS.gene007681 | MS.gene20068 | PPI |
| MS.gene31266 | MS.gene20068 | PPI |
| MS.gene029824 | MS.gene20068 | PPI |
| MS.gene41079 | MS.gene20068 | PPI |
| MS.gene034799 | MS.gene20068 | PPI |
| MS.gene016181 | MS.gene20068 | PPI |
| MS.gene050128 | MS.gene20068 | PPI |
| MS.gene007426 | MS.gene20068 | PPI |
| MS.gene52386 | MS.gene20068 | PPI |
| MS.gene33028 | MS.gene20068 | PPI |
| MS.gene007521 | MS.gene20068 | PPI |
| MS.gene20068 | MS.gene016180 | PPI |
| MS.gene08753 | MS.gene20068 | PPI |
| MS.gene08691 | MS.gene20068 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20068.t1 | MTR_7g101290 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene20068.t1 | MTR_0041s0100 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene20068.t1 | MTR_1g064260 | 94.444 | 216 | 12 | 0 | 5 | 220 | 4 | 219 | 8.28e-156 | 430 |
| MS.gene20068.t1 | MTR_2g094790 | 85.854 | 205 | 29 | 0 | 4 | 208 | 3 | 207 | 5.52e-132 | 370 |
| MS.gene20068.t1 | MTR_4g058740 | 89.119 | 193 | 21 | 0 | 13 | 205 | 12 | 204 | 8.76e-128 | 359 |
| MS.gene20068.t1 | MTR_3g113710 | 77.143 | 210 | 48 | 0 | 11 | 220 | 12 | 221 | 3.99e-122 | 345 |
| MS.gene20068.t1 | MTR_1g064260 | 96.319 | 163 | 6 | 0 | 58 | 220 | 1 | 163 | 1.81e-116 | 329 |
| MS.gene20068.t1 | MTR_1g057020 | 73.206 | 209 | 54 | 1 | 11 | 219 | 6 | 212 | 2.79e-113 | 323 |
| MS.gene20068.t1 | MTR_3g113710 | 78.771 | 179 | 38 | 0 | 11 | 189 | 12 | 190 | 8.71e-106 | 305 |
| MS.gene20068.t1 | MTR_1g015830 | 67.327 | 202 | 66 | 0 | 12 | 213 | 7 | 208 | 7.37e-103 | 296 |
| MS.gene20068.t1 | MTR_3g113710 | 78.767 | 146 | 31 | 0 | 75 | 220 | 10 | 155 | 3.16e-82 | 242 |
| MS.gene20068.t1 | MTR_1g015830 | 67.308 | 156 | 51 | 0 | 58 | 213 | 1 | 156 | 1.09e-75 | 226 |
| MS.gene20068.t1 | MTR_1g024145 | 78.723 | 94 | 20 | 0 | 38 | 131 | 159 | 252 | 1.50e-47 | 157 |
| MS.gene20068.t1 | MTR_1g024850 | 75.714 | 70 | 17 | 0 | 11 | 80 | 14 | 83 | 3.30e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20068.t1 | AT2G37210 | 87.019 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 2.34e-136 | 381 |
| MS.gene20068.t1 | AT3G53450 | 86.058 | 208 | 29 | 0 | 1 | 208 | 1 | 208 | 2.98e-134 | 376 |
| MS.gene20068.t1 | AT2G28305 | 85.238 | 210 | 30 | 1 | 11 | 220 | 5 | 213 | 1.57e-130 | 366 |
| MS.gene20068.t1 | AT2G37210 | 77.586 | 232 | 28 | 1 | 1 | 208 | 1 | 232 | 2.30e-130 | 367 |
| MS.gene20068.t1 | AT2G28305 | 90.503 | 179 | 17 | 0 | 11 | 189 | 5 | 183 | 7.72e-120 | 338 |
| MS.gene20068.t1 | AT5G06300 | 79.208 | 202 | 42 | 0 | 11 | 212 | 6 | 207 | 2.38e-119 | 338 |
| MS.gene20068.t1 | AT5G03270 | 83.871 | 186 | 30 | 0 | 11 | 196 | 16 | 201 | 3.47e-113 | 322 |
| MS.gene20068.t1 | AT4G35190 | 71.921 | 203 | 57 | 0 | 7 | 209 | 2 | 204 | 7.23e-110 | 315 |
| MS.gene20068.t1 | AT5G03270 | 83.978 | 181 | 29 | 0 | 11 | 191 | 16 | 196 | 1.98e-109 | 312 |
| MS.gene20068.t1 | AT2G35990 | 72.165 | 194 | 54 | 0 | 11 | 204 | 6 | 199 | 2.42e-108 | 310 |
| MS.gene20068.t1 | AT4G35190 | 73.575 | 193 | 49 | 1 | 7 | 199 | 2 | 192 | 8.53e-104 | 298 |
| MS.gene20068.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene20068.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene20068.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene20068.t1 | AT2G28305 | 90.909 | 132 | 12 | 0 | 11 | 142 | 5 | 136 | 4.23e-86 | 252 |
| MS.gene20068.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene20068.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene20068.t1 | AT5G11950 | 66.026 | 156 | 53 | 0 | 58 | 213 | 1 | 156 | 7.11e-75 | 224 |
| MS.gene20068.t1 | AT5G26140 | 52.318 | 151 | 50 | 1 | 85 | 213 | 6 | 156 | 2.22e-47 | 154 |
| MS.gene20068.t1 | AT5G26140 | 51.095 | 137 | 45 | 1 | 99 | 213 | 1 | 137 | 4.90e-40 | 134 |
| MS.gene20068.t1 | AT5G26140 | 54.717 | 106 | 48 | 0 | 108 | 213 | 17 | 122 | 8.55e-36 | 123 |
Find 51 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATTGATCTTGTTTA+TGG | 0.168735 | 7.2:+11016000 | MS.gene20068:CDS |
| TTAACTTATGCAGGTGGATA+TGG | 0.277547 | 7.2:+11018052 | MS.gene20068:intron |
| CAATTCATTGCCAAGGTTCA+TGG | 0.335336 | 7.2:-11015331 | None:intergenic |
| ACAATTATGTGACGAGCATT+TGG | 0.366388 | 7.2:-11018318 | None:intergenic |
| ACTCACGCAATGGTGAAATA+AGG | 0.394030 | 7.2:+11015235 | MS.gene20068:CDS |
| GATGGCGGTCGCCATGTCAT+TGG | 0.405743 | 7.2:+11016069 | MS.gene20068:CDS |
| GTTGGATTAGTAAATGTTGA+TGG | 0.409542 | 7.2:+11018237 | MS.gene20068:CDS |
| CTCTCGAGGCATGAGTGTCT+TGG | 0.437050 | 7.2:-11016300 | None:intergenic |
| ATGGCGGTCGCCATGTCATT+GGG | 0.438706 | 7.2:+11016070 | MS.gene20068:CDS |
| ATTGACAAAGCTGTGGAAGA+AGG | 0.461566 | 7.2:+11018285 | MS.gene20068:CDS |
| TCTCGAGGCATGAGTGTCTT+GGG | 0.468747 | 7.2:-11016299 | None:intergenic |
| CATGAACCTTGGCAATGAAT+TGG | 0.469550 | 7.2:+11015332 | MS.gene20068:CDS |
| TTCCATCTGCCAGCTCAACT+TGG | 0.470523 | 7.2:-11018861 | None:intergenic |
| TTGAGATGTCATAATCTTGA+GGG | 0.471297 | 7.2:-11018898 | None:intergenic |
| GTCATAACATGGGCTCAACT+TGG | 0.475221 | 7.2:+11018097 | MS.gene20068:CDS |
| ATTGATCTTGTTTATGGAGG+AGG | 0.482065 | 7.2:+11016006 | MS.gene20068:CDS |
| CAAGGTTCATGGCAGCATCT+TGG | 0.485744 | 7.2:-11015320 | None:intergenic |
| AAAAGAGTTAGTTAAGAAGT+TGG | 0.487121 | 7.2:+11018356 | MS.gene20068:CDS |
| AGGAGGAAGCATTGGTCTCA+TGG | 0.491447 | 7.2:+11016023 | MS.gene20068:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.504128 | 7.2:+11016015 | MS.gene20068:CDS |
| GTTTCTCAAGCTGTTCATGA+TGG | 0.505960 | 7.2:+11016051 | MS.gene20068:CDS |
| GTGTTGCTTCCAAGTTGAGC+TGG | 0.509075 | 7.2:+11018852 | MS.gene20068:CDS |
| TGCTAAGTGCTAACCTGGTA+AGG | 0.510169 | 7.2:-11016759 | None:intergenic |
| AGAGTTAGTTAAGAAGTTGG+AGG | 0.516344 | 7.2:+11018359 | MS.gene20068:CDS |
| TTGACAAAGCTGTGGAAGAA+GGG | 0.531943 | 7.2:+11018286 | MS.gene20068:CDS |
| AACATTGATCTTGTTTATGG+AGG | 0.533518 | 7.2:+11016003 | MS.gene20068:CDS |
| CAAGATGCTGCCATGAACCT+TGG | 0.535202 | 7.2:+11015321 | MS.gene20068:CDS |
| CTCAAGATTATGACATCTCA+AGG | 0.546895 | 7.2:+11018900 | MS.gene20068:CDS |
| GCATCAAAGGAAAGCTGAGA+TGG | 0.549979 | 7.2:+11016712 | MS.gene20068:CDS |
| GGAGGAAGCATTGGTCTCAT+GGG | 0.550392 | 7.2:+11016024 | MS.gene20068:CDS |
| TACATACCAATTCATTGCCA+AGG | 0.561261 | 7.2:-11015338 | None:intergenic |
| TTCCAAGTTGAGCTGGCAGA+TGG | 0.564883 | 7.2:+11018859 | MS.gene20068:CDS |
| CAGCTAACTGGTGAAACAGT+AGG | 0.567165 | 7.2:+11016665 | MS.gene20068:intron |
| CTGTTGCTGATATGCATCAA+AGG | 0.573128 | 7.2:+11016699 | MS.gene20068:CDS |
| CTTGAGATGTCATAATCTTG+AGG | 0.576949 | 7.2:-11018899 | None:intergenic |
| TAACAAATGGACTCACGCAA+TGG | 0.580220 | 7.2:+11015225 | None:intergenic |
| GAAGCAACACCCTCATGACA+TGG | 0.600653 | 7.2:-11018839 | None:intergenic |
| AACTTCTTGAAGTCATAACA+TGG | 0.604120 | 7.2:+11018086 | MS.gene20068:CDS |
| TACTAGACAAATACCTCTCG+AGG | 0.614675 | 7.2:-11016314 | None:intergenic |
| ACTTGGAATTCATGACAAGC+CGG | 0.616968 | 7.2:+11018114 | MS.gene20068:CDS |
| GGAGTATGTTCCATGTCATG+AGG | 0.617100 | 7.2:+11018829 | MS.gene20068:intron |
| GTTCATGGCAGCATCTTGGT+AGG | 0.620771 | 7.2:-11015316 | None:intergenic |
| TCTCAAGCTGTTCATGATGG+CGG | 0.622957 | 7.2:+11016054 | MS.gene20068:CDS |
| TGAAACAGTAGGAGAAGTGA+AGG | 0.624185 | 7.2:+11016676 | MS.gene20068:CDS |
| CAAGACACTCATGCCTCGAG+AGG | 0.636692 | 7.2:+11016301 | MS.gene20068:CDS |
| GTCATTCATTGACAAAGCTG+TGG | 0.639783 | 7.2:+11018278 | MS.gene20068:CDS |
| GAGTATGTTCCATGTCATGA+GGG | 0.646303 | 7.2:+11018830 | MS.gene20068:CDS |
| GTGTTATATACCCAATGACA+TGG | 0.655296 | 7.2:-11016080 | None:intergenic |
| AGGTGGATATGGAACTCTAG+AGG | 0.671132 | 7.2:+11018063 | MS.gene20068:intron |
| TTTGTCAATGAATGACAACA+AGG | 0.686987 | 7.2:-11018271 | None:intergenic |
| ACTTCTTGAAGTCATAACAT+GGG | 0.690032 | 7.2:+11018087 | MS.gene20068:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATATGAAAATGT+CGG | - | chr7.2:11016882-11016901 | None:intergenic | 10.0% |
| !! | TTAATTAATAAGTATACAAT+TGG | - | chr7.2:11018753-11018772 | None:intergenic | 10.0% |
| !! | TTTAAAAATGAAAGATAAAA+AGG | - | chr7.2:11017023-11017042 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTTTGACAA+TGG | - | chr7.2:11018472-11018491 | None:intergenic | 10.0% |
| !!! | TCCAATATTTTATATTTTAA+GGG | - | chr7.2:11017378-11017397 | None:intergenic | 10.0% |
| !! | ATACTCAAAATAAATTACTT+AGG | - | chr7.2:11017652-11017671 | None:intergenic | 15.0% |
| !! | TCCCTTAAAATATAAAATAT+TGG | + | chr7.2:11017374-11017393 | MS.gene20068:intron | 15.0% |
| !! | TTATCATTTATGAATTAATC+TGG | + | chr7.2:11018193-11018212 | MS.gene20068:intron | 15.0% |
| !!! | AAGATTTGAAATTAATTTAC+AGG | + | chr7.2:11018808-11018827 | MS.gene20068:intron | 15.0% |
| !!! | ATTTTATATTTTAAGGGATA+AGG | - | chr7.2:11017372-11017391 | None:intergenic | 15.0% |
| !!! | GTCCAATATTTTATATTTTA+AGG | - | chr7.2:11017379-11017398 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTGTTTACT+TGG | + | chr7.2:11016893-11016912 | MS.gene20068:intron | 15.0% |
| !!! | TTTTAAAACAACATGATTTA+AGG | - | chr7.2:11017179-11017198 | None:intergenic | 15.0% |
| !! | ACCTTAATATGAAACAAAAA+TGG | - | chr7.2:11015672-11015691 | None:intergenic | 20.0% |
| !! | TACAATTCAGATTATAATCA+TGG | + | chr7.2:11017990-11018009 | MS.gene20068:intron | 20.0% |
| !! | TCCAATGTTTATGATTAATA+AGG | + | chr7.2:11017290-11017309 | MS.gene20068:intron | 20.0% |
| !! | TCCTTATTAATCATAAACAT+TGG | - | chr7.2:11017294-11017313 | None:intergenic | 20.0% |
| !! | TGTTAATTAATGAGTAAAAG+AGG | - | chr7.2:11016239-11016258 | None:intergenic | 20.0% |
| !! | TTATATACAAATCATTCCTT+GGG | - | chr7.2:11017761-11017780 | None:intergenic | 20.0% |
| !! | TTTAATAACAGAAGGTAAAA+GGG | - | chr7.2:11016497-11016516 | None:intergenic | 20.0% |
| !! | TTTATATACAAATCATTCCT+TGG | - | chr7.2:11017762-11017781 | None:intergenic | 20.0% |
| !!! | AAAAATGTTGTTTATGTCTT+TGG | + | chr7.2:11016627-11016646 | MS.gene20068:intron | 20.0% |
| !!! | AACACTTTGATTAATGTTTT+TGG | - | chr7.2:11015632-11015651 | None:intergenic | 20.0% |
| !!! | ACACTTTGATTAATGTTTTT+GGG | - | chr7.2:11015631-11015650 | None:intergenic | 20.0% |
| !!! | GAAACAATTGTTTTTTTCAA+AGG | - | chr7.2:11016858-11016877 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr7.2:11016351-11016370 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr7.2:11016448-11016467 | MS.gene20068:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr7.2:11016356-11016375 | MS.gene20068:intron | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr7.2:11016443-11016462 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTTTCATATTA+AGG | + | chr7.2:11015668-11015687 | MS.gene20068:intron | 20.0% |
| !!! | TTGTTTTTGTTGATTTGATT+TGG | + | chr7.2:11017059-11017078 | MS.gene20068:intron | 20.0% |
| ! | AAAAGAGTTAGTTAAGAAGT+TGG | + | chr7.2:11018356-11018375 | MS.gene20068:CDS | 25.0% |
| ! | AACTCACTTATTGAAAAATG+TGG | - | chr7.2:11015432-11015451 | None:intergenic | 25.0% |
| ! | AAGGTTATATACTCTGTATT+TGG | + | chr7.2:11015561-11015580 | MS.gene20068:intron | 25.0% |
| ! | ACTATACTAACTAAATACCA+TGG | + | chr7.2:11017845-11017864 | MS.gene20068:intron | 25.0% |
| ! | AGAGAACAAAAATTAACACT+TGG | + | chr7.2:11016181-11016200 | MS.gene20068:intron | 25.0% |
| ! | AGATATAGATTCCTCAAAAT+TGG | - | chr7.2:11018155-11018174 | None:intergenic | 25.0% |
| ! | ATAATTACAAACTTGTAGGT+TGG | + | chr7.2:11018219-11018238 | MS.gene20068:intron | 25.0% |
| ! | ATTCAGATTATAATCATGGA+TGG | + | chr7.2:11017994-11018013 | MS.gene20068:intron | 25.0% |
| ! | CTTTAATAACAGAAGGTAAA+AGG | - | chr7.2:11016498-11016517 | None:intergenic | 25.0% |
| ! | GAAACAAGAAAACCAAATAA+CGG | - | chr7.2:11015932-11015951 | None:intergenic | 25.0% |
| ! | GCTTATAATTACAAACTTGT+AGG | + | chr7.2:11018215-11018234 | MS.gene20068:intron | 25.0% |
| ! | TAATTCGTAAACAACTTTCA+TGG | + | chr7.2:11017252-11017271 | MS.gene20068:intron | 25.0% |
| ! | TAGTACACTTTAATAACAGA+AGG | - | chr7.2:11016505-11016524 | None:intergenic | 25.0% |
| ! | TATGATATTGTAGAGAATTG+CGG | + | chr7.2:11017898-11017917 | MS.gene20068:intron | 25.0% |
| ! | TCAAAGTTATTCATTACTTG+TGG | - | chr7.2:11017094-11017113 | None:intergenic | 25.0% |
| ! | TCTAAACATAAGAGAAAATC+AGG | - | chr7.2:11016598-11016617 | None:intergenic | 25.0% |
| ! | TTAATAACAGAAGGTAAAAG+GGG | - | chr7.2:11016496-11016515 | None:intergenic | 25.0% |
| ! | TTGTAACATCAATGTTTGTT+AGG | - | chr7.2:11017975-11017994 | None:intergenic | 25.0% |
| ! | TTTGGGCTTAATGTATATAA+TGG | - | chr7.2:11015614-11015633 | None:intergenic | 25.0% |
| !! | AAAAGAATTTGTGTTTTCTG+TGG | + | chr7.2:11015270-11015289 | MS.gene20068:CDS | 25.0% |
| !! | AACAAAAGTAGTGGAAAAAA+TGG | - | chr7.2:11017454-11017473 | None:intergenic | 25.0% |
| !! | AGTGAATTTCAGTTTTTGTA+AGG | + | chr7.2:11015542-11015561 | MS.gene20068:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr7.2:11016346-11016365 | None:intergenic | 25.0% |
| !! | TACCTATAGTTTTCTTAGTT+AGG | - | chr7.2:11018397-11018416 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr7.2:11016453-11016472 | MS.gene20068:intron | 25.0% |
| !! | TTTCAATAAGTGAGTTGAAA+TGG | + | chr7.2:11015436-11015455 | MS.gene20068:intron | 25.0% |
| !! | TTTCTTTTCTTTCATCACAT+GGG | + | chr7.2:11015860-11015879 | MS.gene20068:intron | 25.0% |
| !! | TTTTCTGAATTAACTTATGC+AGG | + | chr7.2:11018043-11018062 | MS.gene20068:intron | 25.0% |
| !! | TTTTCTTTTCTTTCATCACA+TGG | + | chr7.2:11015859-11015878 | MS.gene20068:intron | 25.0% |
| !!! | ATATTTTAAGGGATAAGGTA+AGG | - | chr7.2:11017367-11017386 | None:intergenic | 25.0% |
| !!! | ATTATCAAGTAAGCTTTGAA+GGG | - | chr7.2:11017324-11017343 | None:intergenic | 25.0% |
| AAAAGAGGTTAACAAAAGCT+TGG | - | chr7.2:11016224-11016243 | None:intergenic | 30.0% | |
| AACTTCTTGAAGTCATAACA+TGG | + | chr7.2:11018086-11018105 | MS.gene20068:CDS | 30.0% | |
| AATGAGGGAAAGTAAAGAAA+AGG | + | chr7.2:11017514-11017533 | MS.gene20068:intron | 30.0% | |
| ACTTCTTGAAGTCATAACAT+GGG | + | chr7.2:11018087-11018106 | MS.gene20068:CDS | 30.0% | |
| ATGAATAACTTTGACTAGTG+TGG | + | chr7.2:11017100-11017119 | MS.gene20068:intron | 30.0% | |
| CAAAGAAAGTGATTTCACAT+GGG | - | chr7.2:11018605-11018624 | None:intergenic | 30.0% | |
| CAGTAGAAAGGTTATTGAAA+AGG | - | chr7.2:11017593-11017612 | None:intergenic | 30.0% | |
| CCACGATTTAAATAAATCCA+TGG | - | chr7.2:11017865-11017884 | None:intergenic | 30.0% | |
| CCATGGATTTATTTAAATCG+TGG | + | chr7.2:11017862-11017881 | MS.gene20068:intron | 30.0% | |
| CTCTCAAAGTTGTACTATTT+GGG | + | chr7.2:11016145-11016164 | MS.gene20068:intron | 30.0% | |
| GTCCTAACTAAGAAAACTAT+AGG | + | chr7.2:11018392-11018411 | MS.gene20068:intron | 30.0% | |
| TCAAAGAAAGTGATTTCACA+TGG | - | chr7.2:11018606-11018625 | None:intergenic | 30.0% | |
| TCTCTCAAAGTTGTACTATT+TGG | + | chr7.2:11016144-11016163 | MS.gene20068:intron | 30.0% | |
| TTGAGATGTCATAATCTTGA+GGG | - | chr7.2:11018901-11018920 | None:intergenic | 30.0% | |
| TTGGACATGTCAATTATTAC+CGG | - | chr7.2:11018136-11018155 | None:intergenic | 30.0% | |
| TTGGATAAACTAGAGGATAT+TGG | - | chr7.2:11018502-11018521 | None:intergenic | 30.0% | |
| TTGTGAGAATCAGATTGAAA+AGG | - | chr7.2:11018568-11018587 | None:intergenic | 30.0% | |
| TTTGTCAATGAATGACAACA+AGG | - | chr7.2:11018274-11018293 | None:intergenic | 30.0% | |
| ! | AACATTGATCTTGTTTATGG+AGG | + | chr7.2:11016003-11016022 | MS.gene20068:CDS | 30.0% |
| ! | AATTGACATGTCCAATTTTG+AGG | + | chr7.2:11018141-11018160 | MS.gene20068:intron | 30.0% |
| ! | AGGAACATTGATCTTGTTTA+TGG | + | chr7.2:11016000-11016019 | MS.gene20068:CDS | 30.0% |
| ! | AGTTTTCAATCACTCTTTCT+TGG | + | chr7.2:11017713-11017732 | MS.gene20068:intron | 30.0% |
| ! | CATTATCAAGTAAGCTTTGA+AGG | - | chr7.2:11017325-11017344 | None:intergenic | 30.0% |
| ! | GTTTTCAATCACTCTTTCTT+GGG | + | chr7.2:11017714-11017733 | MS.gene20068:intron | 30.0% |
| ! | TTAACTAACTCTTTTGCAGT+TGG | - | chr7.2:11018351-11018370 | None:intergenic | 30.0% |
| ! | TTTTAGTCCGTACAAATGTT+TGG | - | chr7.2:11015718-11015737 | None:intergenic | 30.0% |
| !! | ACTTGCTTCATTTGATAATG+AGG | + | chr7.2:11017498-11017517 | MS.gene20068:intron | 30.0% |
| !! | CTTGCTTCATTTGATAATGA+GGG | + | chr7.2:11017499-11017518 | MS.gene20068:intron | 30.0% |
| !! | GTTGGATTAGTAAATGTTGA+TGG | + | chr7.2:11018237-11018256 | MS.gene20068:CDS | 30.0% |
| !!! | TGATGTTGTTTGTTTTGTGA+AGG | + | chr7.2:11015972-11015991 | MS.gene20068:intron | 30.0% |
| !!! | TTTGTTTTGTGAAGGTTTCA+AGG | + | chr7.2:11015980-11015999 | MS.gene20068:intron | 30.0% |
| AAAATTAGTGACAGAGAGAG+TGG | + | chr7.2:11017674-11017693 | MS.gene20068:intron | 35.0% | |
| AACTAGTACTAGCAGTAGAA+AGG | - | chr7.2:11017605-11017624 | None:intergenic | 35.0% | |
| ACAAGAAAACCAAATAACGG+TGG | - | chr7.2:11015929-11015948 | None:intergenic | 35.0% | |
| ACAATTATGTGACGAGCATT+TGG | - | chr7.2:11018321-11018340 | None:intergenic | 35.0% | |
| AGAGTTAGTTAAGAAGTTGG+AGG | + | chr7.2:11018359-11018378 | MS.gene20068:CDS | 35.0% | |
| CACTGTTCAAACAAAAGTAG+TGG | - | chr7.2:11017463-11017482 | None:intergenic | 35.0% | |
| CGCTCAAAATTTGATGTATC+TGG | + | chr7.2:11016531-11016550 | MS.gene20068:intron | 35.0% | |
| CTCAAGATTATGACATCTCA+AGG | + | chr7.2:11018900-11018919 | MS.gene20068:CDS | 35.0% | |
| CTCTGAACCAAACATTTGTA+CGG | + | chr7.2:11015708-11015727 | MS.gene20068:intron | 35.0% | |
| CTTGAGATGTCATAATCTTG+AGG | - | chr7.2:11018902-11018921 | None:intergenic | 35.0% | |
| GAAAAGGATGAAACAATGTC+AGG | - | chr7.2:11017577-11017596 | None:intergenic | 35.0% | |
| GAACTTCTTGGATAAACTAG+AGG | - | chr7.2:11018509-11018528 | None:intergenic | 35.0% | |
| GAAGGTAAAAAGTGAGAAGA+AGG | - | chr7.2:11015785-11015804 | None:intergenic | 35.0% | |
| GTGTTATATACCCAATGACA+TGG | - | chr7.2:11016083-11016102 | None:intergenic | 35.0% | |
| GTTTGATGTAGCTTCAATTG+TGG | + | chr7.2:11017929-11017948 | MS.gene20068:intron | 35.0% | |
| TACATACCAATTCATTGCCA+AGG | - | chr7.2:11015341-11015360 | None:intergenic | 35.0% | |
| TATTTGTCTAGTACTTCCTC+CGG | + | chr7.2:11016324-11016343 | MS.gene20068:intron | 35.0% | |
| TCCAAATGTAGCTATGGATA+TGG | - | chr7.2:11017814-11017833 | None:intergenic | 35.0% | |
| TCTGAATTAACTTATGCAGG+TGG | + | chr7.2:11018046-11018065 | MS.gene20068:intron | 35.0% | |
| TCTGATCAACTATATGGTTC+AGG | + | chr7.2:11017421-11017440 | MS.gene20068:intron | 35.0% | |
| TGTGTCTCTGATCAACTATA+TGG | + | chr7.2:11017415-11017434 | MS.gene20068:intron | 35.0% | |
| TTAACTTATGCAGGTGGATA+TGG | + | chr7.2:11018052-11018071 | MS.gene20068:intron | 35.0% | |
| TTAAGGGATAAGGTAAGGTA+AGG | - | chr7.2:11017362-11017381 | None:intergenic | 35.0% | |
| TTATTTAAATCGTGGTCGCA+TGG | + | chr7.2:11017870-11017889 | MS.gene20068:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr7.2:11016457-11016476 | MS.gene20068:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr7.2:11016456-11016475 | MS.gene20068:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr7.2:11016475-11016456 | None:intergenic | 35.0% | |
| TTTGTGTCCAAATGTAGCTA+TGG | - | chr7.2:11017820-11017839 | None:intergenic | 35.0% | |
| ! | AACTGTTGTTGTGTTTTGTG+GGG | + | chr7.2:11016980-11016999 | MS.gene20068:intron | 35.0% |
| ! | ATTGATCTTGTTTATGGAGG+AGG | + | chr7.2:11016006-11016025 | MS.gene20068:CDS | 35.0% |
| ! | CAACTGTTGTTGTGTTTTGT+GGG | + | chr7.2:11016979-11016998 | MS.gene20068:intron | 35.0% |
| ! | CCTAAGAAAATTGATTCCCA+AGG | + | chr7.2:11017742-11017761 | MS.gene20068:intron | 35.0% |
| ! | CCTTGGGAATCAATTTTCTT+AGG | - | chr7.2:11017745-11017764 | None:intergenic | 35.0% |
| ! | GTGAGTTGAAATGGTGTATA+TGG | + | chr7.2:11015445-11015464 | MS.gene20068:intron | 35.0% |
| ! | GTTTGAAGCAATGAGAAAAG+AGG | - | chr7.2:11017223-11017242 | None:intergenic | 35.0% |
| ! | TGGGAATCAATTTTCTTAGG+AGG | - | chr7.2:11017742-11017761 | None:intergenic | 35.0% |
| !! | CACTACTTTTGTTTGAACAG+TGG | + | chr7.2:11017461-11017480 | MS.gene20068:intron | 35.0% |
| !! | CTTTGAAATGCAAACAGTGA+AGG | - | chr7.2:11015803-11015822 | None:intergenic | 35.0% |
| !!! | TGGTAGGTAGTTTTTTTACC+AGG | - | chr7.2:11015303-11015322 | None:intergenic | 35.0% |
| !!! | TGGTTGCTTTTTAGACAGAA+TGG | + | chr7.2:11016913-11016932 | MS.gene20068:intron | 35.0% |
| AAACACTGGCAAGAACTTCT+TGG | - | chr7.2:11018521-11018540 | None:intergenic | 40.0% | |
| AAGTTCTTGCCAGTGTTTGT+TGG | + | chr7.2:11018523-11018542 | MS.gene20068:intron | 40.0% | |
| ACTCACGCAATGGTGAAATA+AGG | + | chr7.2:11015235-11015254 | MS.gene20068:CDS | 40.0% | |
| ACTTGGAATTCATGACAAGC+CGG | + | chr7.2:11018114-11018133 | MS.gene20068:CDS | 40.0% | |
| ATTGACAAAGCTGTGGAAGA+AGG | + | chr7.2:11018285-11018304 | MS.gene20068:CDS | 40.0% | |
| CAATTCATTGCCAAGGTTCA+TGG | - | chr7.2:11015334-11015353 | None:intergenic | 40.0% | |
| CATGAACCTTGGCAATGAAT+TGG | + | chr7.2:11015332-11015351 | MS.gene20068:CDS | 40.0% | |
| CCACAAAACACAACAACAGT+TGG | - | chr7.2:11016981-11017000 | None:intergenic | 40.0% | |
| CCATTCATTGAGGACAAGAA+AGG | + | chr7.2:11017124-11017143 | MS.gene20068:intron | 40.0% | |
| CCTTTCTTGTCCTCAATGAA+TGG | - | chr7.2:11017127-11017146 | None:intergenic | 40.0% | |
| CTGTTGCTGATATGCATCAA+AGG | + | chr7.2:11016699-11016718 | MS.gene20068:CDS | 40.0% | |
| GAGTATGTTCCATGTCATGA+GGG | + | chr7.2:11018830-11018849 | MS.gene20068:CDS | 40.0% | |
| GCCATATCCATAGCTACATT+TGG | + | chr7.2:11017810-11017829 | MS.gene20068:intron | 40.0% | |
| GTAATAGTGCCAACAAACAC+TGG | - | chr7.2:11018535-11018554 | None:intergenic | 40.0% | |
| GTCATTCATTGACAAAGCTG+TGG | + | chr7.2:11018278-11018297 | MS.gene20068:CDS | 40.0% | |
| GTTTCTCAAGCTGTTCATGA+TGG | + | chr7.2:11016051-11016070 | MS.gene20068:CDS | 40.0% | |
| TACTAGACAAATACCTCTCG+AGG | - | chr7.2:11016317-11016336 | None:intergenic | 40.0% | |
| TCATAGTCACCACCGTTATT+TGG | + | chr7.2:11015917-11015936 | MS.gene20068:intron | 40.0% | |
| TGAAACAGTAGGAGAAGTGA+AGG | + | chr7.2:11016676-11016695 | MS.gene20068:CDS | 40.0% | |
| TTGACAAAGCTGTGGAAGAA+GGG | + | chr7.2:11018286-11018305 | MS.gene20068:CDS | 40.0% | |
| ! | CCAACTGTTGTTGTGTTTTG+TGG | + | chr7.2:11016978-11016997 | MS.gene20068:intron | 40.0% |
| ! | GATGCTTTTATTGCCTTACC+AGG | + | chr7.2:11016746-11016765 | MS.gene20068:CDS | 40.0% |
| ! | GGTTAAACTTTTACTCCCTC+CGG | - | chr7.2:11016475-11016494 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGGTCTATGCGA+CGG | - | chr7.2:11017963-11017982 | None:intergenic | 40.0% |
| !!! | GATGTCATTTTGCAGCTAAC+TGG | + | chr7.2:11016653-11016672 | MS.gene20068:intron | 40.0% |
| AGGTGGATATGGAACTCTAG+AGG | + | chr7.2:11018063-11018082 | MS.gene20068:intron | 45.0% | |
| ATTAGTGACAGAGAGAGTGG+AGG | + | chr7.2:11017677-11017696 | MS.gene20068:intron | 45.0% | |
| CAGCTAACTGGTGAAACAGT+AGG | + | chr7.2:11016665-11016684 | MS.gene20068:intron | 45.0% | |
| CTAGTGTGGTCCATTCATTG+AGG | + | chr7.2:11017114-11017133 | MS.gene20068:intron | 45.0% | |
| CTATGGATATGGCAGTGTCA+GGG | - | chr7.2:11017803-11017822 | None:intergenic | 45.0% | |
| GATGAAACAATGTCAGGTGC+AGG | - | chr7.2:11017571-11017590 | None:intergenic | 45.0% | |
| GCATCAAAGGAAAGCTGAGA+TGG | + | chr7.2:11016712-11016731 | MS.gene20068:CDS | 45.0% | |
| GGAGTATGTTCCATGTCATG+AGG | + | chr7.2:11018829-11018848 | MS.gene20068:intron | 45.0% | |
| GTCATAACATGGGCTCAACT+TGG | + | chr7.2:11018097-11018116 | MS.gene20068:CDS | 45.0% | |
| TATGGATATGGCAGTGTCAG+GGG | - | chr7.2:11017802-11017821 | None:intergenic | 45.0% | |
| TCTCAAGCTGTTCATGATGG+CGG | + | chr7.2:11016054-11016073 | MS.gene20068:CDS | 45.0% | |
| TGCTAAGTGCTAACCTGGTA+AGG | - | chr7.2:11016762-11016781 | None:intergenic | 45.0% | |
| TTGCATGCTAAGTGCTAACC+TGG | - | chr7.2:11016767-11016786 | None:intergenic | 45.0% | |
| TTTAAATCGTGGTCGCATGG+CGG | + | chr7.2:11017873-11017892 | MS.gene20068:intron | 45.0% | |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | + | chr7.2:11016015-11016034 | MS.gene20068:CDS | 45.0% |
| ! | GTTTTCTGTGGAAGTAGTCC+TGG | + | chr7.2:11015282-11015301 | MS.gene20068:CDS | 45.0% |
| ATATGGCAGTGTCAGGGGAA+AGG | - | chr7.2:11017797-11017816 | None:intergenic | 50.0% | |
| CAAGATGCTGCCATGAACCT+TGG | + | chr7.2:11015321-11015340 | MS.gene20068:CDS | 50.0% | |
| CAAGGTTCATGGCAGCATCT+TGG | - | chr7.2:11015323-11015342 | None:intergenic | 50.0% | |
| GAAGCAACACCCTCATGACA+TGG | - | chr7.2:11018842-11018861 | None:intergenic | 50.0% | |
| GCTATGGATATGGCAGTGTC+AGG | - | chr7.2:11017804-11017823 | None:intergenic | 50.0% | |
| GTTCATGGCAGCATCTTGGT+AGG | - | chr7.2:11015319-11015338 | None:intergenic | 50.0% | |
| TCTCGAGGCATGAGTGTCTT+GGG | - | chr7.2:11016302-11016321 | None:intergenic | 50.0% | |
| TGTCAGGTGCAGGTGCTAAT+TGG | - | chr7.2:11017561-11017580 | None:intergenic | 50.0% | |
| TTCCATCTGCCAGCTCAACT+TGG | - | chr7.2:11018864-11018883 | None:intergenic | 50.0% | |
| ! | TTCCAAGTTGAGCTGGCAGA+TGG | + | chr7.2:11018859-11018878 | MS.gene20068:CDS | 50.0% |
| !! | AGGAGGAAGCATTGGTCTCA+TGG | + | chr7.2:11016023-11016042 | MS.gene20068:CDS | 50.0% |
| !! | GGAGGAAGCATTGGTCTCAT+GGG | + | chr7.2:11016024-11016043 | MS.gene20068:CDS | 50.0% |
| !! | GTGTTGCTTCCAAGTTGAGC+TGG | + | chr7.2:11018852-11018871 | MS.gene20068:CDS | 50.0% |
| ATGGCGGTCGCCATGTCATT+GGG | + | chr7.2:11016070-11016089 | MS.gene20068:CDS | 55.0% | |
| CAAGACACTCATGCCTCGAG+AGG | + | chr7.2:11016301-11016320 | MS.gene20068:CDS | 55.0% | |
| CTCTCGAGGCATGAGTGTCT+TGG | - | chr7.2:11016303-11016322 | None:intergenic | 55.0% | |
| ! | GATGGCGGTCGCCATGTCAT+TGG | + | chr7.2:11016069-11016088 | MS.gene20068:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 11015231 | 11018925 | 11015231 | ID=MS.gene20068 |
| chr7.2 | mRNA | 11015231 | 11018925 | 11015231 | ID=MS.gene20068.t1;Parent=MS.gene20068 |
| chr7.2 | exon | 11015231 | 11015353 | 11015231 | ID=MS.gene20068.t1.exon1;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11015231 | 11015353 | 11015231 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| chr7.2 | exon | 11015994 | 11016091 | 11015994 | ID=MS.gene20068.t1.exon2;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11015994 | 11016091 | 11015994 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| chr7.2 | exon | 11016292 | 11016322 | 11016292 | ID=MS.gene20068.t1.exon3;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11016292 | 11016322 | 11016292 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| chr7.2 | exon | 11016668 | 11016767 | 11016668 | ID=MS.gene20068.t1.exon4;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11016668 | 11016767 | 11016668 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| chr7.2 | exon | 11018065 | 11018135 | 11018065 | ID=MS.gene20068.t1.exon5;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11018065 | 11018135 | 11018065 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| chr7.2 | exon | 11018237 | 11018380 | 11018237 | ID=MS.gene20068.t1.exon6;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11018237 | 11018380 | 11018237 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| chr7.2 | exon | 11018830 | 11018925 | 11018830 | ID=MS.gene20068.t1.exon7;Parent=MS.gene20068.t1 |
| chr7.2 | CDS | 11018830 | 11018925 | 11018830 | ID=cds.MS.gene20068.t1;Parent=MS.gene20068.t1 |
| Gene Sequence |
| Protein sequence |
