Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055648.t1 | XP_013467854.1 | 98.1 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 3.10E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055648.t1 | Q8GW29 | 83.6 | 214 | 33 | 1 | 1 | 212 | 1 | 214 | 3.7e-98 | 359.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055648.t1 | A0A072VJY2 | 98.1 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 2.2e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055648 | MS.gene068788 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene055648 | MS.gene41079 | 0.902428 | 9.80E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24610 | MS.gene055648 | PPI |
| MS.gene051577 | MS.gene055648 | PPI |
| MS.gene22428 | MS.gene055648 | PPI |
| MS.gene20068 | MS.gene055648 | PPI |
| MS.gene007681 | MS.gene055648 | PPI |
| MS.gene31266 | MS.gene055648 | PPI |
| MS.gene029824 | MS.gene055648 | PPI |
| MS.gene050128 | MS.gene055648 | PPI |
| MS.gene007426 | MS.gene055648 | PPI |
| MS.gene028695 | MS.gene055648 | PPI |
| MS.gene52386 | MS.gene055648 | PPI |
| MS.gene016180 | MS.gene055648 | PPI |
| MS.gene007521 | MS.gene055648 | PPI |
| MS.gene016181 | MS.gene055648 | PPI |
| MS.gene08753 | MS.gene055648 | PPI |
| MS.gene08691 | MS.gene055648 | PPI |
| MS.gene33028 | MS.gene055648 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055648.t1 | MTR_1g057020 | 98.122 | 213 | 4 | 0 | 1 | 213 | 1 | 213 | 1.34e-153 | 424 |
| MS.gene055648.t1 | MTR_2g094790 | 75.385 | 195 | 48 | 0 | 6 | 200 | 10 | 204 | 2.19e-113 | 322 |
| MS.gene055648.t1 | MTR_7g101290 | 72.727 | 209 | 55 | 1 | 6 | 212 | 11 | 219 | 6.07e-113 | 322 |
| MS.gene055648.t1 | MTR_0041s0100 | 72.727 | 209 | 55 | 1 | 6 | 212 | 11 | 219 | 6.07e-113 | 322 |
| MS.gene055648.t1 | MTR_1g064260 | 71.770 | 209 | 57 | 1 | 6 | 212 | 10 | 218 | 5.02e-112 | 319 |
| MS.gene055648.t1 | MTR_3g113710 | 76.020 | 196 | 47 | 0 | 5 | 200 | 11 | 206 | 5.99e-111 | 317 |
| MS.gene055648.t1 | MTR_4g058740 | 75.648 | 193 | 47 | 0 | 8 | 200 | 12 | 204 | 3.42e-110 | 314 |
| MS.gene055648.t1 | MTR_3g113710 | 78.571 | 182 | 39 | 0 | 5 | 186 | 11 | 192 | 1.54e-106 | 306 |
| MS.gene055648.t1 | MTR_1g015830 | 62.911 | 213 | 78 | 1 | 1 | 212 | 1 | 213 | 6.60e-99 | 286 |
| MS.gene055648.t1 | MTR_1g064260 | 72.222 | 162 | 43 | 1 | 53 | 212 | 1 | 162 | 1.10e-83 | 246 |
| MS.gene055648.t1 | MTR_3g113710 | 77.863 | 131 | 29 | 0 | 70 | 200 | 10 | 140 | 9.62e-71 | 213 |
| MS.gene055648.t1 | MTR_1g015830 | 62.112 | 161 | 60 | 1 | 53 | 212 | 1 | 161 | 5.24e-70 | 211 |
| MS.gene055648.t1 | MTR_1g024145 | 71.845 | 103 | 29 | 0 | 24 | 126 | 150 | 252 | 3.84e-48 | 158 |
| MS.gene055648.t1 | MTR_1g024850 | 67.143 | 70 | 23 | 0 | 6 | 75 | 14 | 83 | 9.04e-32 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055648.t1 | AT5G06300 | 83.645 | 214 | 33 | 1 | 1 | 212 | 1 | 214 | 5.03e-131 | 367 |
| MS.gene055648.t1 | AT2G35990 | 75.980 | 204 | 49 | 0 | 1 | 204 | 1 | 204 | 1.85e-118 | 335 |
| MS.gene055648.t1 | AT2G37210 | 75.122 | 205 | 50 | 1 | 5 | 208 | 10 | 214 | 1.91e-115 | 328 |
| MS.gene055648.t1 | AT3G53450 | 75.122 | 205 | 50 | 1 | 5 | 208 | 10 | 214 | 1.60e-114 | 325 |
| MS.gene055648.t1 | AT2G28305 | 71.090 | 211 | 60 | 1 | 3 | 212 | 2 | 212 | 9.10e-113 | 321 |
| MS.gene055648.t1 | AT2G37210 | 66.812 | 229 | 51 | 2 | 5 | 208 | 10 | 238 | 2.13e-109 | 313 |
| MS.gene055648.t1 | AT2G28305 | 77.473 | 182 | 41 | 0 | 3 | 184 | 2 | 183 | 5.92e-107 | 306 |
| MS.gene055648.t1 | AT5G03270 | 72.487 | 189 | 52 | 0 | 2 | 190 | 12 | 200 | 4.33e-103 | 296 |
| MS.gene055648.t1 | AT4G35190 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 9.78e-102 | 294 |
| MS.gene055648.t1 | AT5G03270 | 73.224 | 183 | 49 | 0 | 2 | 184 | 12 | 194 | 3.67e-100 | 288 |
| MS.gene055648.t1 | AT4G35190 | 72.283 | 184 | 51 | 0 | 1 | 184 | 1 | 184 | 3.35e-98 | 284 |
| MS.gene055648.t1 | AT5G11950 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.65e-92 | 269 |
| MS.gene055648.t1 | AT5G11950 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.65e-92 | 269 |
| MS.gene055648.t1 | AT5G11950 | 59.524 | 210 | 84 | 1 | 2 | 210 | 3 | 212 | 2.65e-92 | 269 |
| MS.gene055648.t1 | AT2G35990 | 75.658 | 152 | 37 | 0 | 53 | 204 | 1 | 152 | 1.00e-84 | 248 |
| MS.gene055648.t1 | AT2G35990 | 75.658 | 152 | 37 | 0 | 53 | 204 | 1 | 152 | 1.00e-84 | 248 |
| MS.gene055648.t1 | AT2G28305 | 76.087 | 138 | 33 | 0 | 3 | 140 | 2 | 139 | 1.37e-78 | 233 |
| MS.gene055648.t1 | AT5G11950 | 60.377 | 159 | 62 | 1 | 53 | 210 | 1 | 159 | 3.22e-66 | 201 |
| MS.gene055648.t1 | AT5G26140 | 49.650 | 143 | 50 | 1 | 80 | 200 | 6 | 148 | 9.86e-40 | 134 |
| MS.gene055648.t1 | AT5G26140 | 48.062 | 129 | 45 | 1 | 94 | 200 | 1 | 129 | 1.37e-32 | 115 |
| MS.gene055648.t1 | AT5G26140 | 51.020 | 98 | 48 | 0 | 103 | 200 | 17 | 114 | 4.03e-28 | 103 |
Find 76 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGGATTGATTTGGTTTA+TGG | 0.101186 | 1.4:+48339522 | MS.gene055648:CDS |
| TTTGAAACATTAGGTGGATA+TGG | 0.215130 | 1.4:+48341170 | MS.gene055648:intron |
| GTCTACTGTGGTAGCAGTTC+AGG | 0.251931 | 1.4:+48338566 | MS.gene055648:CDS |
| CTAGTTCAACAGCAGCTTCT+TGG | 0.259502 | 1.4:-48338604 | None:intergenic |
| GATGGCGGACGCCATGTTCT+TGG | 0.292130 | 1.4:+48339591 | MS.gene055648:CDS |
| AATCCTCTTAAACTTTGATT+TGG | 0.295009 | 1.4:-48338540 | None:intergenic |
| GATGCCTTCATTGCCCTTCC+TGG | 0.296660 | 1.4:+48340743 | MS.gene055648:CDS |
| AGATAACTGGTGACCCTATT+GGG | 0.297013 | 1.4:+48340663 | MS.gene055648:intron |
| ACGATAATGCGACGTGCCTT+TGG | 0.334696 | 1.4:-48342792 | None:intergenic |
| GGAATTGGTTAGGGGATTAG+AGG | 0.346976 | 1.4:+48342833 | MS.gene055648:CDS |
| CAGATAACTGGTGACCCTAT+TGG | 0.351597 | 1.4:+48340662 | MS.gene055648:intron |
| TCACATGGCAACTTCTGATT+CGG | 0.371578 | 1.4:-48343152 | None:intergenic |
| AAACCAAATCAAAGTTTAAG+AGG | 0.371717 | 1.4:+48338537 | MS.gene055648:CDS |
| CGATAATGCGACGTGCCTTT+GGG | 0.375378 | 1.4:-48342791 | None:intergenic |
| TGGAACCCTTGAAGAATTGC+TGG | 0.377448 | 1.4:+48341190 | MS.gene055648:CDS |
| ACTCAATGGTTTACCTCTCT+TGG | 0.379537 | 1.4:-48340531 | None:intergenic |
| GGTTGAGAGAAGGATTGATT+TGG | 0.380510 | 1.4:+48339515 | MS.gene055648:intron |
| ACAGCTCTCACTTCCCCAAT+AGG | 0.386608 | 1.4:-48340677 | None:intergenic |
| AATTGCTGGAAATTATTACT+TGG | 0.394745 | 1.4:+48341204 | MS.gene055648:CDS |
| AGGTGGTAGTGTGGGTCTGA+TGG | 0.405577 | 1.4:+48339545 | MS.gene055648:CDS |
| ATGGCGGACGCCATGTTCTT+GGG | 0.414120 | 1.4:+48339592 | MS.gene055648:CDS |
| GGTGGTAGTGTGGGTCTGAT+GGG | 0.415803 | 1.4:+48339546 | MS.gene055648:CDS |
| GTTTATGGAGGTGGTAGTGT+GGG | 0.418025 | 1.4:+48339537 | MS.gene055648:CDS |
| CCACAGCCAAGGAATTGGTT+AGG | 0.425578 | 1.4:+48342823 | MS.gene055648:CDS |
| GCATCAAAGGAAAGCTGAAA+TGG | 0.425795 | 1.4:+48340709 | MS.gene055648:CDS |
| ACAGCAGCTTCTTGGTAAGT+AGG | 0.426650 | 1.4:-48338596 | None:intergenic |
| CACATGGCAACTTCTGATTC+GGG | 0.432879 | 1.4:-48343151 | None:intergenic |
| ATTGATTTGGTTTATGGAGG+TGG | 0.437781 | 1.4:+48339528 | MS.gene055648:CDS |
| AGCATCCACAGCCAAGGAAT+TGG | 0.439181 | 1.4:+48342818 | MS.gene055648:CDS |
| CACAGCCAAGGAATTGGTTA+GGG | 0.451858 | 1.4:+48342824 | MS.gene055648:CDS |
| TCTCTTGGCATGAGACTCCT+AGG | 0.453788 | 1.4:-48340516 | None:intergenic |
| ATTATTACTTGGGCTCAACT+TGG | 0.456278 | 1.4:+48341215 | MS.gene055648:CDS |
| GAAAGCTGAAATGGCTAGGC+AGG | 0.460252 | 1.4:+48340718 | MS.gene055648:CDS |
| GTTTATGCAGTGTTATCCCT+AGG | 0.460934 | 1.4:+48340499 | MS.gene055648:intron |
| GGTTTATGGAGGTGGTAGTG+TGG | 0.474379 | 1.4:+48339536 | MS.gene055648:CDS |
| GATACATATTCATCTTGCTC+AGG | 0.480241 | 1.4:-48343094 | None:intergenic |
| ATTGACAAGGCCGTTGATGA+AGG | 0.480397 | 1.4:+48342759 | MS.gene055648:CDS |
| CAGCTCTCACTTCCCCAATA+GGG | 0.481416 | 1.4:-48340676 | None:intergenic |
| ATTGCTGGAAATTATTACTT+GGG | 0.482520 | 1.4:+48341205 | MS.gene055648:CDS |
| TAATTTCCAGCAATTCTTCA+AGG | 0.488686 | 1.4:-48341196 | None:intergenic |
| TCTTTCTTCCCACACCAACT+TGG | 0.497589 | 1.4:-48343116 | None:intergenic |
| AGGATTGATTTGGTTTATGG+AGG | 0.498565 | 1.4:+48339525 | MS.gene055648:CDS |
| TGGTCGAAAATGCAGATAAC+TGG | 0.500494 | 1.4:+48340650 | MS.gene055648:intron |
| CATACCAGGAAGGGCAATGA+AGG | 0.504465 | 1.4:-48340747 | None:intergenic |
| TTATTACTTGGGCTCAACTT+GGG | 0.511742 | 1.4:+48341216 | MS.gene055648:CDS |
| CAATGTTGAAGGTTGAGAGA+AGG | 0.514544 | 1.4:+48339505 | MS.gene055648:intron |
| AATTTCCAGCAATTCTTCAA+GGG | 0.517255 | 1.4:-48341195 | None:intergenic |
| TGTTGAACTAGCAAAAGAAA+TGG | 0.525403 | 1.4:+48338616 | MS.gene055648:CDS |
| CCTAACCAATTCCTTGGCTG+TGG | 0.525618 | 1.4:-48342823 | None:intergenic |
| TCTACTGTGGTAGCAGTTCA+GGG | 0.526335 | 1.4:+48338567 | MS.gene055648:CDS |
| TAATCCCCTAACCAATTCCT+TGG | 0.543230 | 1.4:-48342829 | None:intergenic |
| ACTTGGGATCCACAGCAAAC+CGG | 0.543825 | 1.4:+48341232 | MS.gene055648:CDS |
| CTGTATCTGATATGCATCAA+AGG | 0.557918 | 1.4:+48340696 | MS.gene055648:CDS |
| GTTTCTCAAGCAGTTCATGA+TGG | 0.562470 | 1.4:+48339573 | MS.gene055648:CDS |
| TGGTTCTTACCGGTTTGCTG+TGG | 0.572186 | 1.4:-48341241 | None:intergenic |
| AAAGGAAAGCTGAAATGGCT+AGG | 0.576735 | 1.4:+48340714 | MS.gene055648:CDS |
| TGAAGGCTTTATTTCCCCAA+AGG | 0.581047 | 1.4:+48342776 | MS.gene055648:CDS |
| GTGGGTCTATTGAATGTGGA+TGG | 0.585448 | 1.4:+48342711 | MS.gene055648:CDS |
| GGAAATAAAGCCTTCATCAA+CGG | 0.588345 | 1.4:-48342769 | None:intergenic |
| CCAAGATTTCATACCAGGAA+GGG | 0.596878 | 1.4:-48340756 | None:intergenic |
| GATAATGCGACGTGCCTTTG+GGG | 0.597193 | 1.4:-48342790 | None:intergenic |
| ATTGTTGTGTTTCATTGACA+AGG | 0.598135 | 1.4:+48342746 | MS.gene055648:CDS |
| CGTGTCAGCATCCACAGCCA+AGG | 0.598380 | 1.4:+48342812 | MS.gene055648:CDS |
| GCCAAGATTTCATACCAGGA+AGG | 0.602177 | 1.4:-48340757 | None:intergenic |
| GCAGGTGGGTCTATTGAATG+TGG | 0.607073 | 1.4:+48342707 | MS.gene055648:intron |
| AGATGAATATGTATCCAAGT+TGG | 0.616544 | 1.4:+48343102 | MS.gene055648:CDS |
| AAGAAACTAACCCAAGAACA+TGG | 0.618263 | 1.4:-48339602 | None:intergenic |
| GATAACTGGTGACCCTATTG+GGG | 0.618479 | 1.4:+48340664 | MS.gene055648:intron |
| AATATGTATCCAAGTTGGTG+TGG | 0.623210 | 1.4:+48343107 | MS.gene055648:CDS |
| ACAGCCAAGGAATTGGTTAG+GGG | 0.625582 | 1.4:+48342825 | MS.gene055648:CDS |
| CTCTTGGCATGAGACTCCTA+GGG | 0.627464 | 1.4:-48340515 | None:intergenic |
| AAGAGGATTTGTGTCTACTG+TGG | 0.635693 | 1.4:+48338554 | MS.gene055648:CDS |
| TCTCAAGCAGTTCATGATGG+CGG | 0.641857 | 1.4:+48339576 | MS.gene055648:CDS |
| TAGGAGTCTCATGCCAAGAG+AGG | 0.642075 | 1.4:+48340518 | MS.gene055648:CDS |
| ATATGTATCCAAGTTGGTGT+GGG | 0.680600 | 1.4:+48343108 | MS.gene055648:CDS |
| TCTTATATAAGATCATCACA+TGG | 0.748551 | 1.4:-48343167 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | chr1.4:48339274-48339293 | None:intergenic | 0.0% |
| !!! | AAAATAAAATTAAAAAATTT+TGG | - | chr1.4:48339307-48339326 | None:intergenic | 0.0% |
| !!! | AAATAAAATTAAAAAATTTT+GGG | - | chr1.4:48339306-48339325 | None:intergenic | 0.0% |
| !!! | TTTTATTTTTTTATATTTTA+TGG | + | chr1.4:48338756-48338775 | MS.gene055648:intron | 0.0% |
| !! | GAAAAAATAAAAATAAACAA+AGG | - | chr1.4:48338896-48338915 | None:intergenic | 10.0% |
| !!! | ATGTAAAAAAATACATTTTT+TGG | - | chr1.4:48338732-48338751 | None:intergenic | 10.0% |
| !!! | ATGTTTTAGTTTTTTTTTTT+GGG | + | chr1.4:48341893-48341912 | MS.gene055648:intron | 10.0% |
| !!! | TATGTTTTAGTTTTTTTTTT+TGG | + | chr1.4:48341892-48341911 | MS.gene055648:intron | 10.0% |
| !!! | TTAAATTTTACTTGTATTTT+AGG | - | chr1.4:48341307-48341326 | None:intergenic | 10.0% |
| !! | AAAGAAAACATCTTTATTAT+AGG | - | chr1.4:48338664-48338683 | None:intergenic | 15.0% |
| !! | AAATTTACTATATACTAATG+TGG | + | chr1.4:48340081-48340100 | MS.gene055648:intron | 15.0% |
| !! | ATAAATAAAAAAGAGTAGTA+TGG | - | chr1.4:48341264-48341283 | None:intergenic | 15.0% |
| !! | ATTGAAATCATTAATTTCTT+AGG | - | chr1.4:48339936-48339955 | None:intergenic | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr1.4:48342269-48342288 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr1.4:48342270-48342289 | None:intergenic | 15.0% |
| !! | TTGAAATCATTAATTTCTTA+GGG | - | chr1.4:48339935-48339954 | None:intergenic | 15.0% |
| !! | TTTGTTAATAAAATATATGG+TGG | + | chr1.4:48340630-48340649 | MS.gene055648:intron | 15.0% |
| !!! | AAAAAAATACATTTTTTGGA+AGG | - | chr1.4:48338728-48338747 | None:intergenic | 15.0% |
| !!! | AACTTCTGTATTTTAAAAAT+AGG | + | chr1.4:48339671-48339690 | MS.gene055648:intron | 15.0% |
| !!! | ACAAGACAAAAATATTTTAA+TGG | - | chr1.4:48340444-48340463 | None:intergenic | 15.0% |
| !!! | ATTGTTGAGTTTTTATATAA+AGG | + | chr1.4:48340124-48340143 | MS.gene055648:intron | 15.0% |
| !!! | ATTTTATAAAGTAGGATATT+AGG | - | chr1.4:48341687-48341706 | None:intergenic | 15.0% |
| !!! | CTAGTTTGTTTAATTATAAA+AGG | - | chr1.4:48341620-48341639 | None:intergenic | 15.0% |
| !!! | TGATTCATATTTTATAAAGT+AGG | - | chr1.4:48341695-48341714 | None:intergenic | 15.0% |
| !!! | TTGTTGAGTTTTTATATAAA+GGG | + | chr1.4:48340125-48340144 | MS.gene055648:intron | 15.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | - | chr1.4:48342311-48342330 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1.4:48342310-48342329 | None:intergenic | 20.0% |
| !! | ATAAAAATCATGAAAGATTG+TGG | - | chr1.4:48339235-48339254 | None:intergenic | 20.0% |
| !! | ATAAAATATTAGTAGAGTGT+GGG | + | chr1.4:48339976-48339995 | MS.gene055648:intron | 20.0% |
| !! | ATATACTAATGTGGTTAATT+TGG | + | chr1.4:48340090-48340109 | MS.gene055648:intron | 20.0% |
| !! | ATTTCAATGTAAGACATTAT+GGG | + | chr1.4:48339948-48339967 | MS.gene055648:intron | 20.0% |
| !! | TAAAAATCATGAAAGATTGT+GGG | - | chr1.4:48339234-48339253 | None:intergenic | 20.0% |
| !! | TATGTCTTATGATAACAAAT+TGG | - | chr1.4:48341418-48341437 | None:intergenic | 20.0% |
| !! | TATTGAATATAAAGTGAAGA+TGG | - | chr1.4:48342883-48342902 | None:intergenic | 20.0% |
| !! | TCTACAAAAATTAATGTATC+TGG | + | chr1.4:48341327-48341346 | MS.gene055648:intron | 20.0% |
| !! | TTATGTCTCTATTATAACTT+TGG | - | chr1.4:48341516-48341535 | None:intergenic | 20.0% |
| !!! | AAAACAATGGTTTTTAAACA+TGG | - | chr1.4:48341840-48341859 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | - | chr1.4:48342334-48342353 | None:intergenic | 20.0% |
| !!! | ATTTAATATTTTTATGGTGC+AGG | + | chr1.4:48342689-48342708 | MS.gene055648:intron | 20.0% |
| !!! | ATTTTACTTGTATTTTAGGA+CGG | - | chr1.4:48341303-48341322 | None:intergenic | 20.0% |
| !!! | CATTTTTAGTAATACTTCAT+CGG | + | chr1.4:48340842-48340861 | MS.gene055648:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1.4:48342200-48342219 | None:intergenic | 20.0% |
| !!! | GTAACATAAGTTGATATATT+TGG | - | chr1.4:48341369-48341388 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | - | chr1.4:48342335-48342354 | None:intergenic | 20.0% |
| !!! | TCATGTTCATATTTTTTTTG+TGG | + | chr1.4:48338828-48338847 | MS.gene055648:intron | 20.0% |
| !!! | TCTTGTTATTTTGAAACATT+AGG | + | chr1.4:48341161-48341180 | MS.gene055648:intron | 20.0% |
| !!! | TGTTGAGTTTTTATATAAAG+GGG | + | chr1.4:48340126-48340145 | MS.gene055648:intron | 20.0% |
| !!! | TTGTGTATAACTTTTACTTA+TGG | + | chr1.4:48340167-48340186 | MS.gene055648:intron | 20.0% |
| !!! | TTTTATAAAGTTCCAAATCT+AGG | + | chr1.4:48338927-48338946 | MS.gene055648:intron | 20.0% |
| ! | AAACCAAATCAAAGTTTAAG+AGG | + | chr1.4:48338537-48338556 | MS.gene055648:CDS | 25.0% |
| ! | AACATAAGAATGAAAGAAAG+AGG | + | chr1.4:48341006-48341025 | MS.gene055648:intron | 25.0% |
| ! | AATCCTCTTAAACTTTGATT+TGG | - | chr1.4:48338543-48338562 | None:intergenic | 25.0% |
| ! | AATTGCTGGAAATTATTACT+TGG | + | chr1.4:48341204-48341223 | MS.gene055648:CDS | 25.0% |
| ! | ACATGAAAAGATAGTACTTT+AGG | + | chr1.4:48342037-48342056 | MS.gene055648:intron | 25.0% |
| ! | ATACATATTGCTAAAACAAG+TGG | + | chr1.4:48343002-48343021 | MS.gene055648:intron | 25.0% |
| ! | ATTGCTGGAAATTATTACTT+GGG | + | chr1.4:48341205-48341224 | MS.gene055648:CDS | 25.0% |
| ! | CAAAAAACCAATAAAGTTGT+TGG | + | chr1.4:48342438-48342457 | MS.gene055648:intron | 25.0% |
| ! | CATAAAATATTAGTAGAGTG+TGG | + | chr1.4:48339975-48339994 | MS.gene055648:intron | 25.0% |
| ! | CTATAACCAAAGAAGTAAAA+CGG | - | chr1.4:48341448-48341467 | None:intergenic | 25.0% |
| ! | CTTAAGATACGTAAAAACAA+TGG | - | chr1.4:48341853-48341872 | None:intergenic | 25.0% |
| ! | CTTTGTATCATTACACTATA+CGG | + | chr1.4:48339183-48339202 | MS.gene055648:intron | 25.0% |
| ! | GACTAATGATGTATGTTATA+TGG | + | chr1.4:48340471-48340490 | MS.gene055648:intron | 25.0% |
| ! | GATTTCAATGTAAGACATTA+TGG | + | chr1.4:48339947-48339966 | MS.gene055648:intron | 25.0% |
| ! | TAAGCATGATACATAACATT+AGG | + | chr1.4:48341959-48341978 | MS.gene055648:intron | 25.0% |
| ! | TACATATTGCTAAAACAAGT+GGG | + | chr1.4:48343003-48343022 | MS.gene055648:intron | 25.0% |
| ! | TACATTTAGAAGCTTCTATA+GGG | - | chr1.4:48340025-48340044 | None:intergenic | 25.0% |
| ! | TCTGTAAAAAATAAGCCAAA+AGG | - | chr1.4:48340231-48340250 | None:intergenic | 25.0% |
| ! | TTACTTCTTTGGTTATAGTT+GGG | + | chr1.4:48341450-48341469 | MS.gene055648:intron | 25.0% |
| ! | TTTACTTCTTTGGTTATAGT+TGG | + | chr1.4:48341449-48341468 | MS.gene055648:intron | 25.0% |
| ! | TTTCAATGTAAGACATTATG+GGG | + | chr1.4:48339949-48339968 | MS.gene055648:intron | 25.0% |
| !! | ATAGAGATTGATTGATTTAG+TGG | - | chr1.4:48339343-48339362 | None:intergenic | 25.0% |
| !! | CGATGAAGTATTACTAAAAA+TGG | - | chr1.4:48340844-48340863 | None:intergenic | 25.0% |
| !! | GTTGAGTTTTTATATAAAGG+GGG | + | chr1.4:48340127-48340146 | MS.gene055648:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr1.4:48342223-48342242 | None:intergenic | 25.0% |
| !! | TTGAGTTTTTATATAAAGGG+GGG | + | chr1.4:48340128-48340147 | MS.gene055648:intron | 25.0% |
| !! | TTTATTGATTGCTAAGAAGT+GGG | + | chr1.4:48339869-48339888 | MS.gene055648:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1.4:48342201-48342220 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr1.4:48342222-48342241 | None:intergenic | 25.0% |
| !!! | TGTTATTTTGAAACATTAGG+TGG | + | chr1.4:48341164-48341183 | MS.gene055648:intron | 25.0% |
| !!! | TTTTATTGATTGCTAAGAAG+TGG | + | chr1.4:48339868-48339887 | MS.gene055648:intron | 25.0% |
| !!! | TTTTGAAGACATTGGTTAAA+AGG | + | chr1.4:48340199-48340218 | MS.gene055648:intron | 25.0% |
| AAAAAAAAAAAGGTAGCCCT+TGG | - | chr1.4:48339265-48339284 | None:intergenic | 30.0% | |
| AAAACTAAGATCATGCAAGA+AGG | - | chr1.4:48339020-48339039 | None:intergenic | 30.0% | |
| AAAGGAAAAGGCAAAAACAT+TGG | - | chr1.4:48340277-48340296 | None:intergenic | 30.0% | |
| AATCTAGGTTAAGATTGTTG+AGG | + | chr1.4:48338942-48338961 | MS.gene055648:intron | 30.0% | |
| AATGTATGAAGCCTCTAATA+TGG | - | chr1.4:48340970-48340989 | None:intergenic | 30.0% | |
| AATTTCCAGCAATTCTTCAA+GGG | - | chr1.4:48341198-48341217 | None:intergenic | 30.0% | |
| ACATTTAGAAGCTTCTATAG+GGG | - | chr1.4:48340024-48340043 | None:intergenic | 30.0% | |
| AGATGAATATGTATCCAAGT+TGG | + | chr1.4:48343102-48343121 | MS.gene055648:CDS | 30.0% | |
| AGGATATTATCATGTGAAGT+GGG | + | chr1.4:48341098-48341117 | MS.gene055648:intron | 30.0% | |
| ATAAACAAAGGAGAAGAAAG+AGG | - | chr1.4:48338884-48338903 | None:intergenic | 30.0% | |
| ATAATTGAACCGAAACATGT+GGG | + | chr1.4:48341997-48342016 | MS.gene055648:intron | 30.0% | |
| ATATCTTTCTCCCATTCAAA+TGG | - | chr1.4:48342133-48342152 | None:intergenic | 30.0% | |
| ATTGTTGTGTTTCATTGACA+AGG | + | chr1.4:48342746-48342765 | MS.gene055648:CDS | 30.0% | |
| ATTTGGTTAACACATGAAGT+TGG | + | chr1.4:48341128-48341147 | MS.gene055648:intron | 30.0% | |
| CAACAATCTTAACCTAGATT+TGG | - | chr1.4:48338942-48338961 | None:intergenic | 30.0% | |
| CATTTAATGTTATGTGAAGC+AGG | + | chr1.4:48343063-48343082 | MS.gene055648:intron | 30.0% | |
| CTACACTAGTAAAACATGAA+AGG | + | chr1.4:48340779-48340798 | MS.gene055648:intron | 30.0% | |
| CTACATTTAGAAGCTTCTAT+AGG | - | chr1.4:48340026-48340045 | None:intergenic | 30.0% | |
| CTATAGAAGCTTCTAAATGT+AGG | + | chr1.4:48340024-48340043 | MS.gene055648:intron | 30.0% | |
| CTTCTAAATGTAGGATGTAA+GGG | + | chr1.4:48340033-48340052 | MS.gene055648:intron | 30.0% | |
| GATATATGACGTTAGATTGA+TGG | + | chr1.4:48342103-48342122 | MS.gene055648:intron | 30.0% | |
| GTCTATATCTATGTGTTTGT+TGG | + | chr1.4:48339825-48339844 | MS.gene055648:intron | 30.0% | |
| GTTGAAAATACACACAATCT+AGG | + | chr1.4:48339739-48339758 | MS.gene055648:intron | 30.0% | |
| TAATTTCCAGCAATTCTTCA+AGG | - | chr1.4:48341199-48341218 | None:intergenic | 30.0% | |
| TACTTCTTTGGTTATAGTTG+GGG | + | chr1.4:48341451-48341470 | MS.gene055648:intron | 30.0% | |
| TAGGATATTATCATGTGAAG+TGG | + | chr1.4:48341097-48341116 | MS.gene055648:intron | 30.0% | |
| TATAATTGAACCGAAACATG+TGG | + | chr1.4:48341996-48342015 | MS.gene055648:intron | 30.0% | |
| TCATTAATTTCTTAGGGAAC+AGG | - | chr1.4:48339929-48339948 | None:intergenic | 30.0% | |
| TGTATAAATGAAGGGAAAAG+TGG | - | chr1.4:48342326-48342345 | None:intergenic | 30.0% | |
| TGTTGAACTAGCAAAAGAAA+TGG | + | chr1.4:48338616-48338635 | MS.gene055648:CDS | 30.0% | |
| TTCAATGTAAGACATTATGG+GGG | + | chr1.4:48339950-48339969 | MS.gene055648:intron | 30.0% | |
| ! | GTTTGTGTTTTCAATGTTGA+AGG | + | chr1.4:48339494-48339513 | MS.gene055648:intron | 30.0% |
| ! | TTTGAAACATTAGGTGGATA+TGG | + | chr1.4:48341170-48341189 | MS.gene055648:intron | 30.0% |
| !! | AATATTTTTATGGTGCAGGT+GGG | + | chr1.4:48342693-48342712 | MS.gene055648:intron | 30.0% |
| !! | AGAAGGATTGATTTGGTTTA+TGG | + | chr1.4:48339522-48339541 | MS.gene055648:CDS | 30.0% |
| !! | ATTTTCAACTAGAGTTCTGA+TGG | - | chr1.4:48339728-48339747 | None:intergenic | 30.0% |
| !! | TAATATTTTTATGGTGCAGG+TGG | + | chr1.4:48342692-48342711 | MS.gene055648:intron | 30.0% |
| !! | TAGAAGCTTTTTGAAGACAT+TGG | + | chr1.4:48340191-48340210 | MS.gene055648:intron | 30.0% |
| !! | TTGTTACTTTCTTTCTTGCT+TGG | + | chr1.4:48339426-48339445 | MS.gene055648:intron | 30.0% |
| !! | TTTTCAACTAGAGTTCTGAT+GGG | - | chr1.4:48339727-48339746 | None:intergenic | 30.0% |
| !!! | AGATTGTTTTATTTGCTAGC+TGG | + | chr1.4:48338972-48338991 | MS.gene055648:intron | 30.0% |
| !!! | TATATGCCGTTTTACTTCTT+TGG | + | chr1.4:48341439-48341458 | MS.gene055648:intron | 30.0% |
| AAAGGACAGCATTAACTCAA+TGG | - | chr1.4:48340548-48340567 | None:intergenic | 35.0% | |
| AAGAAACTAACCCAAGAACA+TGG | - | chr1.4:48339605-48339624 | None:intergenic | 35.0% | |
| AAGAGTAGTATGGTTCTTAC+CGG | - | chr1.4:48341254-48341273 | None:intergenic | 35.0% | |
| AAGATTGTGGGAAATGGTAA+AGG | - | chr1.4:48339222-48339241 | None:intergenic | 35.0% | |
| ACTTCTTTGGTTATAGTTGG+GGG | + | chr1.4:48341452-48341471 | MS.gene055648:intron | 35.0% | |
| ACTTTCTTTCTTGCTTGGTT+TGG | + | chr1.4:48339431-48339450 | MS.gene055648:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1.4:48342187-48342206 | None:intergenic | 35.0% | |
| ATTATTACTTGGGCTCAACT+TGG | + | chr1.4:48341215-48341234 | MS.gene055648:CDS | 35.0% | |
| ATTCAATACCCCACATGTTT+CGG | - | chr1.4:48342009-48342028 | None:intergenic | 35.0% | |
| ATTTAGAAGCTTCTATAGGG+GGG | - | chr1.4:48340022-48340041 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr1.4:48342370-48342389 | MS.gene055648:intron | 35.0% | |
| CATTTAGAAGCTTCTATAGG+GGG | - | chr1.4:48340023-48340042 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr1.4:48342369-48342388 | MS.gene055648:intron | 35.0% | |
| CCAATAAAGTTGTTGGTCAA+TGG | + | chr1.4:48342445-48342464 | MS.gene055648:intron | 35.0% | |
| CCATTGACCAACAACTTTAT+TGG | - | chr1.4:48342448-48342467 | None:intergenic | 35.0% | |
| CTGTATCTGATATGCATCAA+AGG | + | chr1.4:48340696-48340715 | MS.gene055648:CDS | 35.0% | |
| CTTGGTTCAATGAAAGTCTT+TGG | - | chr1.4:48340946-48340965 | None:intergenic | 35.0% | |
| GATACATATTCATCTTGCTC+AGG | - | chr1.4:48343097-48343116 | None:intergenic | 35.0% | |
| GCTTCTAAATGTAGGATGTA+AGG | + | chr1.4:48340032-48340051 | MS.gene055648:intron | 35.0% | |
| GGAAATAAAGCCTTCATCAA+CGG | - | chr1.4:48342772-48342791 | None:intergenic | 35.0% | |
| GGGATCTGATGCATTAATAT+TGG | - | chr1.4:48339707-48339726 | None:intergenic | 35.0% | |
| GTGAAGTGGGATTCTTAATT+TGG | + | chr1.4:48341111-48341130 | MS.gene055648:intron | 35.0% | |
| TAATTGAACCGAAACATGTG+GGG | + | chr1.4:48341998-48342017 | MS.gene055648:intron | 35.0% | |
| TCATGAAAGATTGTGGGAAA+TGG | - | chr1.4:48339228-48339247 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr1.4:48342356-48342375 | MS.gene055648:intron | 35.0% | |
| TGATGGTTCTCCATTTGAAT+GGG | + | chr1.4:48342120-48342139 | MS.gene055648:intron | 35.0% | |
| TTATTACTTGGGCTCAACTT+GGG | + | chr1.4:48341216-48341235 | MS.gene055648:CDS | 35.0% | |
| TTGAACCAAGACCATATTAG+AGG | + | chr1.4:48340956-48340975 | MS.gene055648:intron | 35.0% | |
| ! | AATGCTTTCTGCACTTTTCT+AGG | + | chr1.4:48339143-48339162 | MS.gene055648:intron | 35.0% |
| ! | AGAAGAAAGAGGTGTAACAA+GGG | - | chr1.4:48338873-48338892 | None:intergenic | 35.0% |
| ! | AGAGCAATTCACATTTTCGT+CGG | + | chr1.4:48342506-48342525 | MS.gene055648:intron | 35.0% |
| ! | CTATGTGTTTGTTGGATGAA+AGG | + | chr1.4:48339833-48339852 | MS.gene055648:intron | 35.0% |
| ! | GATTTTTATCCTACAGCCAA+GGG | + | chr1.4:48339246-48339265 | MS.gene055648:intron | 35.0% |
| ! | GTTAAAAGGTGAATGCCTTT+TGG | + | chr1.4:48340213-48340232 | MS.gene055648:intron | 35.0% |
| ! | TGATTTTTATCCTACAGCCA+AGG | + | chr1.4:48339245-48339264 | MS.gene055648:intron | 35.0% |
| ! | TTGATGGTTCTCCATTTGAA+TGG | + | chr1.4:48342119-48342138 | MS.gene055648:intron | 35.0% |
| ! | TTTTACAGAAAGTTCATGCG+CGG | + | chr1.4:48340242-48340261 | MS.gene055648:intron | 35.0% |
| !! | AATATGTATCCAAGTTGGTG+TGG | + | chr1.4:48343107-48343126 | MS.gene055648:CDS | 35.0% |
| !! | AGGATTGATTTGGTTTATGG+AGG | + | chr1.4:48339525-48339544 | MS.gene055648:CDS | 35.0% |
| !! | ATATGTATCCAAGTTGGTGT+GGG | + | chr1.4:48343108-48343127 | MS.gene055648:CDS | 35.0% |
| !! | ATTGATTTGGTTTATGGAGG+TGG | + | chr1.4:48339528-48339547 | MS.gene055648:CDS | 35.0% |
| !!! | CTTCATCGGTTTTTGTTTAC+CGG | + | chr1.4:48340856-48340875 | MS.gene055648:intron | 35.0% |
| AAAATGGTCAATTCGACACG+TGG | - | chr1.4:48340828-48340847 | None:intergenic | 40.0% | |
| AAAGGAAAGCTGAAATGGCT+AGG | + | chr1.4:48340714-48340733 | MS.gene055648:CDS | 40.0% | |
| AAATGGTCAATTCGACACGT+GGG | - | chr1.4:48340827-48340846 | None:intergenic | 40.0% | |
| AAGAGGATTTGTGTCTACTG+TGG | + | chr1.4:48338554-48338573 | MS.gene055648:CDS | 40.0% | |
| AAGTGAAGATGGTTGAGCAA+TGG | - | chr1.4:48342872-48342891 | None:intergenic | 40.0% | |
| AATTCCAGAGAGTTCACAAG+AGG | - | chr1.4:48341655-48341674 | None:intergenic | 40.0% | |
| AATTTCTTAGGGAACAGGCA+TGG | - | chr1.4:48339924-48339943 | None:intergenic | 40.0% | |
| ACTCAATGGTTTACCTCTCT+TGG | - | chr1.4:48340534-48340553 | None:intergenic | 40.0% | |
| AGAGCATACTCATGTGAAGT+AGG | + | chr1.4:48341078-48341097 | MS.gene055648:intron | 40.0% | |
| AGATAACTGGTGACCCTATT+GGG | + | chr1.4:48340663-48340682 | MS.gene055648:intron | 40.0% | |
| ATCCACATGTGGACCATATA+TGG | + | chr1.4:48340889-48340908 | MS.gene055648:intron | 40.0% | |
| ATTTCTTAGGGAACAGGCAT+GGG | - | chr1.4:48339923-48339942 | None:intergenic | 40.0% | |
| CAAAGTGCATGCAAGTGAAA+AGG | - | chr1.4:48340295-48340314 | None:intergenic | 40.0% | |
| CAATGTTGAAGGTTGAGAGA+AGG | + | chr1.4:48339505-48339524 | MS.gene055648:intron | 40.0% | |
| CATGTGGATCTGGTAAAATC+CGG | - | chr1.4:48340878-48340897 | None:intergenic | 40.0% | |
| CCAAGATTTCATACCAGGAA+GGG | - | chr1.4:48340759-48340778 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr1.4:48342372-48342391 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1.4:48342186-48342205 | None:intergenic | 40.0% | |
| GATCTTATTGCAACGAGCAA+AGG | - | chr1.4:48340566-48340585 | None:intergenic | 40.0% | |
| GCATCAAAGGAAAGCTGAAA+TGG | + | chr1.4:48340709-48340728 | MS.gene055648:CDS | 40.0% | |
| GCATGCAAGTGAAAAGGAAA+AGG | - | chr1.4:48340289-48340308 | None:intergenic | 40.0% | |
| GGTTGAGAGAAGGATTGATT+TGG | + | chr1.4:48339515-48339534 | MS.gene055648:intron | 40.0% | |
| GTATGACATGCATCATAGCT+AGG | - | chr1.4:48341800-48341819 | None:intergenic | 40.0% | |
| GTTTATGCAGTGTTATCCCT+AGG | + | chr1.4:48340499-48340518 | MS.gene055648:intron | 40.0% | |
| GTTTCTCAAGCAGTTCATGA+TGG | + | chr1.4:48339573-48339592 | MS.gene055648:CDS | 40.0% | |
| TAACTAGAGACATGCCTGAA+AGG | + | chr1.4:48341555-48341574 | MS.gene055648:intron | 40.0% | |
| TAATCCCCTAACCAATTCCT+TGG | - | chr1.4:48342832-48342851 | None:intergenic | 40.0% | |
| TCACATGGCAACTTCTGATT+CGG | - | chr1.4:48343155-48343174 | None:intergenic | 40.0% | |
| TGAAGCCTCTAATATGGTCT+TGG | - | chr1.4:48340964-48340983 | None:intergenic | 40.0% | |
| TGGTCGAAAATGCAGATAAC+TGG | + | chr1.4:48340650-48340669 | MS.gene055648:intron | 40.0% | |
| TGTAGCCAAGATTTCATACC+AGG | - | chr1.4:48340764-48340783 | None:intergenic | 40.0% | |
| TTATTCCATTCCCACCTTTC+AGG | - | chr1.4:48341572-48341591 | None:intergenic | 40.0% | |
| TTTACAGAAAGTTCATGCGC+GGG | + | chr1.4:48340243-48340262 | MS.gene055648:intron | 40.0% | |
| ! | GAGAAGAAAGAGGTGTAACA+AGG | - | chr1.4:48338874-48338893 | None:intergenic | 40.0% |
| ! | GATTTTACCAGATCCACATG+TGG | + | chr1.4:48340878-48340897 | MS.gene055648:intron | 40.0% |
| !! | TGAAGGCTTTATTTCCCCAA+AGG | + | chr1.4:48342776-48342795 | MS.gene055648:CDS | 40.0% |
| AATTATTACTCCCTCCGTCC+CGG | - | chr1.4:48342391-48342410 | None:intergenic | 45.0% | |
| ACAGCAGCTTCTTGGTAAGT+AGG | - | chr1.4:48338599-48338618 | None:intergenic | 45.0% | |
| ACAGCCAAGGAATTGGTTAG+GGG | + | chr1.4:48342825-48342844 | MS.gene055648:CDS | 45.0% | |
| ATATGGTCCACATGTGGATC+TGG | - | chr1.4:48340888-48340907 | None:intergenic | 45.0% | |
| CAACAACTGTTGTAGCAGAC+CGG | - | chr1.4:48340916-48340935 | None:intergenic | 45.0% | |
| CACAGCCAAGGAATTGGTTA+GGG | + | chr1.4:48342824-48342843 | MS.gene055648:CDS | 45.0% | |
| CACATGGCAACTTCTGATTC+GGG | - | chr1.4:48343154-48343173 | None:intergenic | 45.0% | |
| CAGATAACTGGTGACCCTAT+TGG | + | chr1.4:48340662-48340681 | MS.gene055648:intron | 45.0% | |
| CATGTGGACCATATATGGAC+CGG | + | chr1.4:48340894-48340913 | MS.gene055648:intron | 45.0% | |
| CCCTTCCTGGTATGAAATCT+TGG | + | chr1.4:48340756-48340775 | MS.gene055648:intron | 45.0% | |
| CTAGTTCAACAGCAGCTTCT+TGG | - | chr1.4:48338607-48338626 | None:intergenic | 45.0% | |
| GATAACTGGTGACCCTATTG+GGG | + | chr1.4:48340664-48340683 | MS.gene055648:intron | 45.0% | |
| GCCAAGATTTCATACCAGGA+AGG | - | chr1.4:48340760-48340779 | None:intergenic | 45.0% | |
| GGAATTGGTTAGGGGATTAG+AGG | + | chr1.4:48342833-48342852 | MS.gene055648:CDS | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr1.4:48342374-48342393 | MS.gene055648:intron | 45.0% | |
| GTCCATATATGGTCCACATG+TGG | - | chr1.4:48340894-48340913 | None:intergenic | 45.0% | |
| GTGGGTCTATTGAATGTGGA+TGG | + | chr1.4:48342711-48342730 | MS.gene055648:CDS | 45.0% | |
| TAGAGACATGCCTGAAAGGT+GGG | + | chr1.4:48341559-48341578 | MS.gene055648:intron | 45.0% | |
| TCATAGCTAGGAGGCAAAGT+TGG | - | chr1.4:48341788-48341807 | None:intergenic | 45.0% | |
| TCTACTGTGGTAGCAGTTCA+GGG | + | chr1.4:48338567-48338586 | MS.gene055648:CDS | 45.0% | |
| TCTCAAGCAGTTCATGATGG+CGG | + | chr1.4:48339576-48339595 | MS.gene055648:CDS | 45.0% | |
| TCTTTCTTCCCACACCAACT+TGG | - | chr1.4:48343119-48343138 | None:intergenic | 45.0% | |
| TGACATGCATCATAGCTAGG+AGG | - | chr1.4:48341797-48341816 | None:intergenic | 45.0% | |
| TGGAACCCTTGAAGAATTGC+TGG | + | chr1.4:48341190-48341209 | MS.gene055648:CDS | 45.0% | |
| ! | ATTGACAAGGCCGTTGATGA+AGG | + | chr1.4:48342759-48342778 | MS.gene055648:CDS | 45.0% |
| ! | CTAGGAGGCAAAGTTGGTTA+AGG | - | chr1.4:48341782-48341801 | None:intergenic | 45.0% |
| ! | GTTTATGGAGGTGGTAGTGT+GGG | + | chr1.4:48339537-48339556 | MS.gene055648:CDS | 45.0% |
| !!! | TAATTTGTTAATAAAATATA+TGG | + | chr1.4:48340627-48340646 | MS.gene055648:intron | 5.0% |
| !!! | TTGATTATTTAATATTTTTA+TGG | + | chr1.4:48342683-48342702 | MS.gene055648:intron | 5.0% |
| !!! | TTTTTTCTTTTTAAATTATT+CGG | + | chr1.4:48341746-48341765 | MS.gene055648:intron | 5.0% |
| AAAAGGTAGCCCTTGGCTGT+AGG | - | chr1.4:48339258-48339277 | None:intergenic | 50.0% | |
| ACAGCTCTCACTTCCCCAAT+AGG | - | chr1.4:48340680-48340699 | None:intergenic | 50.0% | |
| ACATGCCTGAAAGGTGGGAA+TGG | + | chr1.4:48341564-48341583 | MS.gene055648:intron | 50.0% | |
| ACGATAATGCGACGTGCCTT+TGG | - | chr1.4:48342795-48342814 | None:intergenic | 50.0% | |
| ACTTGGGATCCACAGCAAAC+CGG | + | chr1.4:48341232-48341251 | MS.gene055648:CDS | 50.0% | |
| AGCATCCACAGCCAAGGAAT+TGG | + | chr1.4:48342818-48342837 | MS.gene055648:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1.4:48342182-48342201 | None:intergenic | 50.0% | |
| CAGCTCTCACTTCCCCAATA+GGG | - | chr1.4:48340679-48340698 | None:intergenic | 50.0% | |
| CATACCAGGAAGGGCAATGA+AGG | - | chr1.4:48340750-48340769 | None:intergenic | 50.0% | |
| CCACAGCCAAGGAATTGGTT+AGG | + | chr1.4:48342823-48342842 | MS.gene055648:CDS | 50.0% | |
| CCTAACCAATTCCTTGGCTG+TGG | - | chr1.4:48342826-48342845 | None:intergenic | 50.0% | |
| CGATAATGCGACGTGCCTTT+GGG | - | chr1.4:48342794-48342813 | None:intergenic | 50.0% | |
| CTAGAGACATGCCTGAAAGG+TGG | + | chr1.4:48341558-48341577 | MS.gene055648:intron | 50.0% | |
| CTCTTGGCATGAGACTCCTA+GGG | - | chr1.4:48340518-48340537 | None:intergenic | 50.0% | |
| CTTGCCTCTTGTGAACTCTC+TGG | + | chr1.4:48341648-48341667 | MS.gene055648:intron | 50.0% | |
| GAAAGCTGAAATGGCTAGGC+AGG | + | chr1.4:48340718-48340737 | MS.gene055648:CDS | 50.0% | |
| GAAAGTTCATGCGCGGGAAT+TGG | + | chr1.4:48340249-48340268 | MS.gene055648:intron | 50.0% | |
| GATAATGCGACGTGCCTTTG+GGG | - | chr1.4:48342793-48342812 | None:intergenic | 50.0% | |
| GCAGGTGGGTCTATTGAATG+TGG | + | chr1.4:48342707-48342726 | MS.gene055648:intron | 50.0% | |
| GTAGCAGACCGGTCCATATA+TGG | - | chr1.4:48340905-48340924 | None:intergenic | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | + | chr1.4:48342378-48342397 | MS.gene055648:intron | 50.0% | |
| GTCTACTGTGGTAGCAGTTC+AGG | + | chr1.4:48338566-48338585 | MS.gene055648:CDS | 50.0% | |
| TAGGAGTCTCATGCCAAGAG+AGG | + | chr1.4:48340518-48340537 | MS.gene055648:CDS | 50.0% | |
| TCTCTTGGCATGAGACTCCT+AGG | - | chr1.4:48340519-48340538 | None:intergenic | 50.0% | |
| ! | GGTTTATGGAGGTGGTAGTG+TGG | + | chr1.4:48339536-48339555 | MS.gene055648:CDS | 50.0% |
| !! | TGGTTCTTACCGGTTTGCTG+TGG | - | chr1.4:48341244-48341263 | None:intergenic | 50.0% |
| AACTAGTACTCCCTCCGTCC+CGG | + | chr1.4:48342165-48342184 | MS.gene055648:intron | 55.0% | |
| GATGCCTTCATTGCCCTTCC+TGG | + | chr1.4:48340743-48340762 | MS.gene055648:CDS | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr1.4:48342377-48342396 | MS.gene055648:intron | 55.0% | |
| GTCAATTCGACACGTGGGCT+CGG | - | chr1.4:48340822-48340841 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1.4:48342178-48342197 | None:intergenic | 55.0% | |
| ! | AGGTGGTAGTGTGGGTCTGA+TGG | + | chr1.4:48339545-48339564 | MS.gene055648:CDS | 55.0% |
| ! | GGTGGTAGTGTGGGTCTGAT+GGG | + | chr1.4:48339546-48339565 | MS.gene055648:CDS | 55.0% |
| !! | ATGGCGGACGCCATGTTCTT+GGG | + | chr1.4:48339592-48339611 | MS.gene055648:CDS | 55.0% |
| CGTGTCAGCATCCACAGCCA+AGG | + | chr1.4:48342812-48342831 | MS.gene055648:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1.4:48342179-48342198 | None:intergenic | 60.0% | |
| !! | GATGGCGGACGCCATGTTCT+TGG | + | chr1.4:48339591-48339610 | MS.gene055648:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48338530 | 48343174 | 48338530 | ID=MS.gene055648 |
| chr1.4 | mRNA | 48338530 | 48343174 | 48338530 | ID=MS.gene055648.t1;Parent=MS.gene055648 |
| chr1.4 | exon | 48338530 | 48338637 | 48338530 | ID=MS.gene055648.t1.exon1;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48338530 | 48338637 | 48338530 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| chr1.4 | exon | 48339516 | 48339613 | 48339516 | ID=MS.gene055648.t1.exon2;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48339516 | 48339613 | 48339516 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| chr1.4 | exon | 48340509 | 48340539 | 48340509 | ID=MS.gene055648.t1.exon3;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48340509 | 48340539 | 48340509 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| chr1.4 | exon | 48340665 | 48340764 | 48340665 | ID=MS.gene055648.t1.exon4;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48340665 | 48340764 | 48340665 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| chr1.4 | exon | 48341183 | 48341253 | 48341183 | ID=MS.gene055648.t1.exon5;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48341183 | 48341253 | 48341183 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| chr1.4 | exon | 48342711 | 48342854 | 48342711 | ID=MS.gene055648.t1.exon6;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48342711 | 48342854 | 48342711 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| chr1.4 | exon | 48343085 | 48343174 | 48343085 | ID=MS.gene055648.t1.exon7;Parent=MS.gene055648.t1 |
| chr1.4 | CDS | 48343085 | 48343174 | 48343085 | ID=cds.MS.gene055648.t1;Parent=MS.gene055648.t1 |
| Gene Sequence |
| Protein sequence |
