Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08753.t1 | XP_003606367.1 | 99 | 209 | 2 | 0 | 1 | 209 | 1 | 209 | 2.50E-111 | 411.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08753.t1 | Q8RUN2 | 90.8 | 196 | 18 | 0 | 9 | 204 | 4 | 199 | 1.2e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08753.t1 | G7JND4 | 99.0 | 209 | 2 | 0 | 1 | 209 | 1 | 209 | 1.8e-111 | 411.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene08753 | 0.812399 | 4.32E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene08753 | 0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene08753 | 0.810648 | 1.04E-50 | -1.69E-46 |
| MS.gene049260 | MS.gene08753 | 0.855222 | 7.29E-62 | -1.69E-46 |
| MS.gene049356 | MS.gene08753 | 0.829453 | 5.10E-55 | -1.69E-46 |
| MS.gene049389 | MS.gene08753 | 0.817069 | 3.99E-52 | -1.69E-46 |
| MS.gene049443 | MS.gene08753 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene08753 | 0.802964 | 4.37E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene08753 | 0.86342 | 2.52E-64 | -1.69E-46 |
| MS.gene050128 | MS.gene08753 | 0.989323 | 1.24E-177 | -1.69E-46 |
| MS.gene050301 | MS.gene08753 | 0.868881 | 4.70E-66 | -1.69E-46 |
| MS.gene050529 | MS.gene08753 | 0.802116 | 6.54E-49 | -1.69E-46 |
| MS.gene050685 | MS.gene08753 | 0.837228 | 5.88E-57 | -1.69E-46 |
| MS.gene050762 | MS.gene08753 | 0.810883 | 9.24E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene08753 | 0.811514 | 6.74E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene08753 | 0.804704 | 1.90E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene08753 | 0.810506 | 1.11E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene08753 | 0.839233 | 1.79E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene08753 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene08753 | 0.896171 | 4.77E-76 | -1.69E-46 |
| MS.gene052188 | MS.gene08753 | 0.855778 | 5.02E-62 | -1.69E-46 |
| MS.gene052310 | MS.gene08753 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene08753 | 0.847816 | 9.10E-60 | -1.69E-46 |
| MS.gene053073 | MS.gene08753 | 0.836086 | 1.15E-56 | -1.69E-46 |
| MS.gene05316 | MS.gene08753 | 0.902667 | 7.67E-79 | -1.69E-46 |
| MS.gene053209 | MS.gene08753 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene053555 | MS.gene08753 | 0.809232 | 2.09E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene08753 | 0.866102 | 3.64E-65 | -1.69E-46 |
| MS.gene053559 | MS.gene08753 | 0.83348 | 5.21E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene08753 | 0.839044 | 2.00E-57 | -1.69E-46 |
| MS.gene053928 | MS.gene08753 | 0.812635 | 3.84E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene08753 | 0.848267 | 6.83E-60 | -1.69E-46 |
| MS.gene054011 | MS.gene08753 | 0.850757 | 1.38E-60 | -1.69E-46 |
| MS.gene054012 | MS.gene08753 | 0.849163 | 3.86E-60 | -1.69E-46 |
| MS.gene054013 | MS.gene08753 | 0.850267 | 1.90E-60 | -1.69E-46 |
| MS.gene054123 | MS.gene08753 | 0.850864 | 1.29E-60 | -1.69E-46 |
| MS.gene054214 | MS.gene08753 | 0.842964 | 1.87E-58 | -1.69E-46 |
| MS.gene054349 | MS.gene08753 | 0.811599 | 6.46E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene08753 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene08753 | 0.805855 | 1.09E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene08753 | 0.812 | 5.28E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene08753 | 0.83706 | 6.49E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene08753 | 0.830494 | 2.85E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene08753 | 0.844648 | 6.64E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene08753 | 0.86868 | 5.45E-66 | -1.69E-46 |
| MS.gene056191 | MS.gene08753 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene08753 | 0.809197 | 2.13E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene08753 | 0.815948 | 7.12E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene08753 | 0.817966 | 2.51E-52 | -1.69E-46 |
| MS.gene056902 | MS.gene08753 | 0.856878 | 2.39E-62 | -1.69E-46 |
| MS.gene056931 | MS.gene08753 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene056933 | MS.gene08753 | 0.805963 | 1.04E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene08753 | 0.809786 | 1.59E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene08753 | 0.864069 | 1.59E-64 | -1.69E-46 |
| MS.gene057449 | MS.gene08753 | 0.860088 | 2.63E-63 | -1.69E-46 |
| MS.gene057450 | MS.gene08753 | 0.868878 | 4.70E-66 | -1.69E-46 |
| MS.gene057469 | MS.gene08753 | 0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene057537 | MS.gene08753 | 0.86996 | 2.09E-66 | -1.69E-46 |
| MS.gene057752 | MS.gene08753 | 0.813252 | 2.81E-51 | -1.69E-46 |
| MS.gene057779 | MS.gene08753 | 0.810949 | 8.94E-51 | -1.69E-46 |
| MS.gene057794 | MS.gene08753 | 0.826405 | 2.76E-54 | -1.69E-46 |
| MS.gene057796 | MS.gene08753 | 0.835921 | 1.27E-56 | -1.69E-46 |
| MS.gene057927 | MS.gene08753 | 0.80008 | 1.70E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene08753 | 0.834 | 3.86E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene08753 | 0.811676 | 6.22E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene08753 | 0.846343 | 2.31E-59 | -1.69E-46 |
| MS.gene058293 | MS.gene08753 | 0.807468 | 4.98E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene08753 | 0.80922 | 2.11E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene08753 | 0.818582 | 1.82E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene08753 | 0.814805 | 1.28E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene08753 | 0.843263 | 1.56E-58 | -1.69E-46 |
| MS.gene058949 | MS.gene08753 | 0.811062 | 8.45E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene08753 | 0.84629 | 2.38E-59 | -1.69E-46 |
| MS.gene059228 | MS.gene08753 | 0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene08753 | 0.870579 | 1.31E-66 | -1.69E-46 |
| MS.gene059342 | MS.gene08753 | 0.806717 | 7.18E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene08753 | 0.823614 | 1.26E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene08753 | 0.818318 | 2.09E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene08753 | 0.835177 | 1.95E-56 | -1.69E-46 |
| MS.gene05959 | MS.gene08753 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene08753 | 0.817467 | 3.25E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene08753 | 0.81958 | 1.08E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene08753 | 0.835627 | 1.50E-56 | -1.69E-46 |
| MS.gene059695 | MS.gene08753 | 0.827221 | 1.76E-54 | -1.69E-46 |
| MS.gene059708 | MS.gene08753 | 0.833212 | 6.07E-56 | -1.69E-46 |
| MS.gene059807 | MS.gene08753 | 0.844801 | 6.04E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene08753 | 0.842023 | 3.33E-58 | -1.69E-46 |
| MS.gene059894 | MS.gene08753 | 0.861006 | 1.39E-63 | -1.69E-46 |
| MS.gene059899 | MS.gene08753 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene08753 | 0.851818 | 6.93E-61 | -1.69E-46 |
| MS.gene060005 | MS.gene08753 | 0.868186 | 7.87E-66 | -1.69E-46 |
| MS.gene06037 | MS.gene08753 | 0.845137 | 4.90E-59 | -1.69E-46 |
| MS.gene060495 | MS.gene08753 | 0.886426 | 3.46E-72 | -1.69E-46 |
| MS.gene060496 | MS.gene08753 | 0.812482 | 4.15E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene08753 | 0.80428 | 2.33E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene08753 | 0.811737 | 6.03E-51 | -1.69E-46 |
| MS.gene060800 | MS.gene08753 | 0.863614 | 2.20E-64 | -1.69E-46 |
| MS.gene060801 | MS.gene08753 | 0.815264 | 1.01E-51 | -1.69E-46 |
| MS.gene060943 | MS.gene08753 | 0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene08753 | 0.859158 | 5.02E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene08753 | -0.84927 | 3.60E-60 | -1.69E-46 |
| MS.gene061112 | MS.gene08753 | 0.808264 | 3.37E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene08753 | 0.812497 | 4.12E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08753 | MS.gene016181 | PPI |
| MS.gene08753 | MS.gene034799 | PPI |
| MS.gene08753 | MS.gene24610 | PPI |
| MS.gene33028 | MS.gene08753 | PPI |
| MS.gene08753 | MS.gene41079 | PPI |
| MS.gene08753 | MS.gene016180 | PPI |
| MS.gene051577 | MS.gene08753 | PPI |
| MS.gene08753 | MS.gene007521 | PPI |
| MS.gene08753 | MS.gene007426 | PPI |
| MS.gene22428 | MS.gene08753 | PPI |
| MS.gene08753 | MS.gene52386 | PPI |
| MS.gene08753 | MS.gene20068 | PPI |
| MS.gene08753 | MS.gene055648 | PPI |
| MS.gene08753 | MS.gene029824 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08753.t1 | MTR_4g058740 | 99.043 | 209 | 2 | 0 | 1 | 209 | 1 | 209 | 9.93e-154 | 424 |
| MS.gene08753.t1 | MTR_2g094790 | 88.517 | 209 | 24 | 0 | 1 | 209 | 1 | 209 | 2.72e-138 | 385 |
| MS.gene08753.t1 | MTR_1g064260 | 87.255 | 204 | 26 | 0 | 1 | 204 | 1 | 204 | 8.21e-133 | 372 |
| MS.gene08753.t1 | MTR_7g101290 | 87.940 | 199 | 24 | 0 | 6 | 204 | 7 | 205 | 1.33e-130 | 366 |
| MS.gene08753.t1 | MTR_0041s0100 | 87.940 | 199 | 24 | 0 | 6 | 204 | 7 | 205 | 1.33e-130 | 366 |
| MS.gene08753.t1 | MTR_3g113710 | 72.222 | 216 | 53 | 1 | 1 | 209 | 3 | 218 | 4.57e-116 | 330 |
| MS.gene08753.t1 | MTR_1g057020 | 75.377 | 199 | 49 | 0 | 6 | 204 | 2 | 200 | 8.18e-113 | 321 |
| MS.gene08753.t1 | MTR_3g113710 | 75.532 | 188 | 46 | 0 | 1 | 188 | 3 | 190 | 1.03e-107 | 309 |
| MS.gene08753.t1 | MTR_1g015830 | 68.269 | 208 | 62 | 1 | 1 | 208 | 1 | 204 | 8.16e-105 | 301 |
| MS.gene08753.t1 | MTR_1g064260 | 88.514 | 148 | 17 | 0 | 57 | 204 | 1 | 148 | 6.02e-95 | 274 |
| MS.gene08753.t1 | MTR_1g015830 | 69.079 | 152 | 47 | 0 | 57 | 208 | 1 | 152 | 7.34e-76 | 226 |
| MS.gene08753.t1 | MTR_3g113710 | 74.126 | 143 | 30 | 1 | 74 | 209 | 10 | 152 | 5.39e-74 | 221 |
| MS.gene08753.t1 | MTR_1g024145 | 71.845 | 103 | 29 | 0 | 28 | 130 | 150 | 252 | 4.07e-48 | 158 |
| MS.gene08753.t1 | MTR_1g024850 | 72.857 | 70 | 19 | 0 | 10 | 79 | 14 | 83 | 3.47e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08753.t1 | AT2G28305 | 90.816 | 196 | 18 | 0 | 9 | 204 | 4 | 199 | 7.92e-133 | 372 |
| MS.gene08753.t1 | AT2G37210 | 85.644 | 202 | 29 | 0 | 7 | 208 | 8 | 209 | 8.89e-131 | 367 |
| MS.gene08753.t1 | AT3G53450 | 82.857 | 210 | 35 | 1 | 1 | 209 | 1 | 210 | 1.81e-128 | 360 |
| MS.gene08753.t1 | AT2G37210 | 76.106 | 226 | 30 | 1 | 7 | 208 | 8 | 233 | 8.24e-125 | 352 |
| MS.gene08753.t1 | AT2G28305 | 92.778 | 180 | 13 | 0 | 9 | 188 | 4 | 183 | 4.67e-123 | 346 |
| MS.gene08753.t1 | AT5G06300 | 78.894 | 199 | 42 | 0 | 6 | 204 | 2 | 200 | 1.12e-117 | 333 |
| MS.gene08753.t1 | AT5G03270 | 79.793 | 193 | 39 | 0 | 3 | 195 | 9 | 201 | 6.03e-113 | 321 |
| MS.gene08753.t1 | AT5G03270 | 79.787 | 188 | 38 | 0 | 3 | 190 | 9 | 196 | 6.72e-109 | 310 |
| MS.gene08753.t1 | AT2G35990 | 69.849 | 199 | 60 | 0 | 6 | 204 | 2 | 200 | 9.30e-109 | 311 |
| MS.gene08753.t1 | AT4G35190 | 71.782 | 202 | 57 | 0 | 6 | 207 | 2 | 203 | 1.90e-108 | 310 |
| MS.gene08753.t1 | AT4G35190 | 73.545 | 189 | 50 | 0 | 6 | 194 | 2 | 190 | 4.80e-103 | 296 |
| MS.gene08753.t1 | AT5G11950 | 67.164 | 201 | 66 | 0 | 8 | 208 | 5 | 205 | 7.32e-103 | 296 |
| MS.gene08753.t1 | AT5G11950 | 67.164 | 201 | 66 | 0 | 8 | 208 | 5 | 205 | 7.32e-103 | 296 |
| MS.gene08753.t1 | AT5G11950 | 67.164 | 201 | 66 | 0 | 8 | 208 | 5 | 205 | 7.32e-103 | 296 |
| MS.gene08753.t1 | AT2G28305 | 92.647 | 136 | 10 | 0 | 9 | 144 | 4 | 139 | 8.41e-90 | 261 |
| MS.gene08753.t1 | AT2G35990 | 70.270 | 148 | 44 | 0 | 57 | 204 | 1 | 148 | 2.57e-78 | 232 |
| MS.gene08753.t1 | AT2G35990 | 70.270 | 148 | 44 | 0 | 57 | 204 | 1 | 148 | 2.57e-78 | 232 |
| MS.gene08753.t1 | AT5G11950 | 67.105 | 152 | 50 | 0 | 57 | 208 | 1 | 152 | 1.56e-74 | 222 |
| MS.gene08753.t1 | AT5G26140 | 55.102 | 147 | 44 | 1 | 84 | 208 | 6 | 152 | 2.97e-48 | 155 |
| MS.gene08753.t1 | AT5G26140 | 54.135 | 133 | 39 | 1 | 98 | 208 | 1 | 133 | 1.05e-41 | 138 |
| MS.gene08753.t1 | AT5G26140 | 58.824 | 102 | 42 | 0 | 107 | 208 | 17 | 118 | 1.22e-37 | 127 |
Find 53 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATTGATTTGGTTTA+TGG | 0.095929 | 4.2:-44702124 | MS.gene08753:CDS |
| ACAATTATATGACGAGCTTT+AGG | 0.212084 | 4.2:+44696654 | None:intergenic |
| TGTCAAGTACCTCCATCTTT+TGG | 0.309053 | 4.2:+44696604 | None:intergenic |
| CAATTATATGACGAGCTTTA+GGG | 0.317659 | 4.2:+44696655 | None:intergenic |
| TCTAAGCAAAGTTGGGAAAC+TGG | 0.328148 | 4.2:-44696106 | MS.gene08753:CDS |
| TGAAAGAATCAAAGTTTAAG+AGG | 0.352776 | 4.2:-44704471 | MS.gene08753:CDS |
| GGTGTCAAGAAATATTGATT+TGG | 0.365193 | 4.2:-44702131 | MS.gene08753:CDS |
| AGGAGGCAGCATTGGTTTGA+TGG | 0.380464 | 4.2:-44702101 | MS.gene08753:CDS |
| CAGCATTGGTTTGATGGGGT+TGG | 0.384600 | 4.2:-44702095 | MS.gene08753:CDS |
| GGAGGCAGCATTGGTTTGAT+GGG | 0.391809 | 4.2:-44702100 | MS.gene08753:CDS |
| CATCATAAAATTACCTCTCT+TGG | 0.431675 | 4.2:+44701904 | None:intergenic |
| TCTCTTGGCATCAGTGTCCT+TGG | 0.437369 | 4.2:+44701919 | None:intergenic |
| TATATGCATGAAGGTGGCTA+TGG | 0.441783 | 4.2:-44696917 | MS.gene08753:intron |
| GTTTATGGAGGAGGCAGCAT+TGG | 0.458836 | 4.2:-44702109 | MS.gene08753:CDS |
| GGAAACTTACTGGTTTATCA+TGG | 0.459986 | 4.2:+44696846 | None:intergenic |
| GATGCAACTCTTTCATGTTG+TGG | 0.462188 | 4.2:+44696127 | None:intergenic |
| GTTTCTCAAGCGGTTTATGA+TGG | 0.462950 | 4.2:-44702073 | MS.gene08753:CDS |
| AAAGATGCTGCTATTGAGCT+TGG | 0.470913 | 4.2:-44704403 | MS.gene08753:CDS |
| CTAAGCAAAGTTGGGAAACT+GGG | 0.478869 | 4.2:-44696105 | MS.gene08753:CDS |
| GTGGGATTGTTGAATGTAGA+TGG | 0.481596 | 4.2:-44696735 | MS.gene08753:CDS |
| AGCTTCTTGAGGTCATAACT+TGG | 0.481664 | 4.2:-44696883 | MS.gene08753:CDS |
| GATGGAGGTCGACATGTGAT+TGG | 0.485208 | 4.2:-44702055 | MS.gene08753:CDS |
| ATTGATTTGGTTTATGGAGG+AGG | 0.486097 | 4.2:-44702118 | MS.gene08753:CDS |
| AAGTTGGGAAACTGGGAAGC+TGG | 0.495777 | 4.2:-44696098 | MS.gene08753:CDS |
| AGTTGCATCTAAGCAAAGTT+GGG | 0.497061 | 4.2:-44696113 | MS.gene08753:CDS |
| AATAAAAGCATCAGAATGCT+TGG | 0.500098 | 4.2:+44700121 | None:intergenic |
| GAATGGGAACCAACCTGGTA+AGG | 0.500409 | 4.2:+44700097 | None:intergenic |
| GGAGAAGTGAAGGCAGTAGC+AGG | 0.500561 | 4.2:-44700170 | MS.gene08753:CDS |
| AGTGGGTTTGTGCAGATCAC+TGG | 0.500630 | 4.2:-44700203 | MS.gene08753:intron |
| GTCATAACTTGGGCTCAACT+TGG | 0.508031 | 4.2:-44696872 | MS.gene08753:CDS |
| AATATTGATTTGGTTTATGG+AGG | 0.510397 | 4.2:-44702121 | MS.gene08753:CDS |
| AAAAGAGCTTGTCCAAAAGA+TGG | 0.518338 | 4.2:-44696616 | MS.gene08753:CDS |
| AAGAAATAAAGAGATGGAGG+AGG | 0.519029 | 4.2:-44704503 | None:intergenic |
| GAGTTGCATCTAAGCAAAGT+TGG | 0.520245 | 4.2:-44696114 | MS.gene08753:CDS |
| GAGGCAGCATTGGTTTGATG+GGG | 0.537940 | 4.2:-44702099 | MS.gene08753:CDS |
| ATTGACAAAGCTGTGGAGGA+AGG | 0.543403 | 4.2:-44696687 | MS.gene08753:CDS |
| AGAGACAGTGGGAGAAGTGA+AGG | 0.543939 | 4.2:-44700180 | MS.gene08753:CDS |
| TCTCAAGCGGTTTATGATGG+AGG | 0.544599 | 4.2:-44702070 | MS.gene08753:CDS |
| TTATAGCTACTCTTGTTACC+AGG | 0.556974 | 4.2:+44704424 | None:intergenic |
| GCATCAAAGAAAAGCTGAGA+TGG | 0.557994 | 4.2:-44700144 | MS.gene08753:CDS |
| GACACTTGAGGAGCTTCTTG+AGG | 0.558323 | 4.2:-44696894 | MS.gene08753:CDS |
| GATGGGGTTGGTTTCTCAAG+CGG | 0.560074 | 4.2:-44702083 | MS.gene08753:CDS |
| ATGGAGGTCGACATGTGATT+GGG | 0.564949 | 4.2:-44702054 | MS.gene08753:intron |
| ATCTTTCATTGACAAAGCTG+TGG | 0.565707 | 4.2:-44696694 | MS.gene08753:CDS |
| GCTTCTTGAGGTCATAACTT+GGG | 0.575878 | 4.2:-44696882 | MS.gene08753:CDS |
| ATATGCATGAAGGTGGCTAT+GGG | 0.577892 | 4.2:-44696916 | MS.gene08753:intron |
| TATTGAGCTTGGAAATGAGT+TGG | 0.583903 | 4.2:-44704392 | MS.gene08753:intron |
| TTTCATTGACAAAGCTGTGG+AGG | 0.587801 | 4.2:-44696691 | MS.gene08753:CDS |
| CAGATCACTGGAGAGACAGT+GGG | 0.608222 | 4.2:-44700191 | MS.gene08753:CDS |
| GCAGATCACTGGAGAGACAG+TGG | 0.632705 | 4.2:-44700192 | MS.gene08753:intron |
| AAGGACACTGATGCCAAGAG+AGG | 0.647568 | 4.2:-44701917 | MS.gene08753:intron |
| AGGTGGCTATGGGACACTTG+AGG | 0.653214 | 4.2:-44696906 | MS.gene08753:CDS |
| AGAGCTTGTCCAAAAGATGG+AGG | 0.667572 | 4.2:-44696613 | MS.gene08753:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 44696093 | 44704512 | 44696093 | ID=MS.gene08753 |
| chr4.2 | mRNA | 44696093 | 44704512 | 44696093 | ID=MS.gene08753.t1;Parent=MS.gene08753 |
| chr4.2 | exon | 44704393 | 44704512 | 44704393 | ID=MS.gene08753.t1.exon1;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44704393 | 44704512 | 44704393 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| chr4.2 | exon | 44702055 | 44702152 | 44702055 | ID=MS.gene08753.t1.exon2;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44702055 | 44702152 | 44702055 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| chr4.2 | exon | 44701918 | 44701948 | 44701918 | ID=MS.gene08753.t1.exon3;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44701918 | 44701948 | 44701918 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| chr4.2 | exon | 44700111 | 44700210 | 44700111 | ID=MS.gene08753.t1.exon4;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44700111 | 44700210 | 44700111 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| chr4.2 | exon | 44696856 | 44696926 | 44696856 | ID=MS.gene08753.t1.exon5;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44696856 | 44696926 | 44696856 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| chr4.2 | exon | 44696614 | 44696757 | 44696614 | ID=MS.gene08753.t1.exon6;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44696614 | 44696757 | 44696614 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| chr4.2 | exon | 44696093 | 44696158 | 44696093 | ID=MS.gene08753.t1.exon7;Parent=MS.gene08753.t1 |
| chr4.2 | CDS | 44696093 | 44696158 | 44696093 | ID=cds.MS.gene08753.t1;Parent=MS.gene08753.t1 |
| Gene Sequence |
| Protein sequence |
