Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007426.t1 | XP_013443105.1 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007426.t1 | Q8L8B8 | 87.0 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 1.9e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007426.t1 | A0A072TU87 | 99.5 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007426 | MS.gene41079 | PPI |
| MS.gene007426 | MS.gene016180 | PPI |
| MS.gene31266 | MS.gene007426 | PPI |
| MS.gene029824 | MS.gene007426 | PPI |
| MS.gene034799 | MS.gene007426 | PPI |
| MS.gene050128 | MS.gene007426 | PPI |
| MS.gene007426 | MS.gene016181 | PPI |
| MS.gene52386 | MS.gene007426 | PPI |
| MS.gene33028 | MS.gene007426 | PPI |
| MS.gene007521 | MS.gene007426 | PPI |
| MS.gene007426 | MS.gene028695 | PPI |
| MS.gene007426 | MS.gene20068 | PPI |
| MS.gene08753 | MS.gene007426 | PPI |
| MS.gene08691 | MS.gene007426 | PPI |
| MS.gene007426 | MS.gene055648 | PPI |
| MS.gene24610 | MS.gene007426 | PPI |
| MS.gene051577 | MS.gene007426 | PPI |
| MS.gene22428 | MS.gene007426 | PPI |
| MS.gene007681 | MS.gene007426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007426.t1 | MTR_7g101290 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene007426.t1 | MTR_0041s0100 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.46e-165 | 455 |
| MS.gene007426.t1 | MTR_1g064260 | 94.444 | 216 | 12 | 0 | 5 | 220 | 4 | 219 | 8.28e-156 | 430 |
| MS.gene007426.t1 | MTR_2g094790 | 85.854 | 205 | 29 | 0 | 4 | 208 | 3 | 207 | 5.52e-132 | 370 |
| MS.gene007426.t1 | MTR_4g058740 | 89.119 | 193 | 21 | 0 | 13 | 205 | 12 | 204 | 8.76e-128 | 359 |
| MS.gene007426.t1 | MTR_3g113710 | 77.143 | 210 | 48 | 0 | 11 | 220 | 12 | 221 | 3.99e-122 | 345 |
| MS.gene007426.t1 | MTR_1g064260 | 96.319 | 163 | 6 | 0 | 58 | 220 | 1 | 163 | 1.81e-116 | 329 |
| MS.gene007426.t1 | MTR_1g057020 | 73.206 | 209 | 54 | 1 | 11 | 219 | 6 | 212 | 2.79e-113 | 323 |
| MS.gene007426.t1 | MTR_3g113710 | 78.771 | 179 | 38 | 0 | 11 | 189 | 12 | 190 | 8.71e-106 | 305 |
| MS.gene007426.t1 | MTR_1g015830 | 67.327 | 202 | 66 | 0 | 12 | 213 | 7 | 208 | 7.37e-103 | 296 |
| MS.gene007426.t1 | MTR_3g113710 | 78.767 | 146 | 31 | 0 | 75 | 220 | 10 | 155 | 3.16e-82 | 242 |
| MS.gene007426.t1 | MTR_1g015830 | 67.308 | 156 | 51 | 0 | 58 | 213 | 1 | 156 | 1.09e-75 | 226 |
| MS.gene007426.t1 | MTR_1g024145 | 78.723 | 94 | 20 | 0 | 38 | 131 | 159 | 252 | 1.50e-47 | 157 |
| MS.gene007426.t1 | MTR_1g024850 | 75.714 | 70 | 17 | 0 | 11 | 80 | 14 | 83 | 3.30e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007426.t1 | AT2G37210 | 87.019 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 2.34e-136 | 381 |
| MS.gene007426.t1 | AT3G53450 | 86.058 | 208 | 29 | 0 | 1 | 208 | 1 | 208 | 2.98e-134 | 376 |
| MS.gene007426.t1 | AT2G28305 | 85.238 | 210 | 30 | 1 | 11 | 220 | 5 | 213 | 1.57e-130 | 366 |
| MS.gene007426.t1 | AT2G37210 | 77.586 | 232 | 28 | 1 | 1 | 208 | 1 | 232 | 2.30e-130 | 367 |
| MS.gene007426.t1 | AT2G28305 | 90.503 | 179 | 17 | 0 | 11 | 189 | 5 | 183 | 7.72e-120 | 338 |
| MS.gene007426.t1 | AT5G06300 | 79.208 | 202 | 42 | 0 | 11 | 212 | 6 | 207 | 2.38e-119 | 338 |
| MS.gene007426.t1 | AT5G03270 | 83.871 | 186 | 30 | 0 | 11 | 196 | 16 | 201 | 3.47e-113 | 322 |
| MS.gene007426.t1 | AT4G35190 | 71.921 | 203 | 57 | 0 | 7 | 209 | 2 | 204 | 7.23e-110 | 315 |
| MS.gene007426.t1 | AT5G03270 | 83.978 | 181 | 29 | 0 | 11 | 191 | 16 | 196 | 1.98e-109 | 312 |
| MS.gene007426.t1 | AT2G35990 | 72.165 | 194 | 54 | 0 | 11 | 204 | 6 | 199 | 2.42e-108 | 310 |
| MS.gene007426.t1 | AT4G35190 | 73.575 | 193 | 49 | 1 | 7 | 199 | 2 | 192 | 8.53e-104 | 298 |
| MS.gene007426.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene007426.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene007426.t1 | AT5G11950 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.08e-101 | 293 |
| MS.gene007426.t1 | AT2G28305 | 90.909 | 132 | 12 | 0 | 11 | 142 | 5 | 136 | 4.23e-86 | 252 |
| MS.gene007426.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene007426.t1 | AT2G35990 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.82e-78 | 233 |
| MS.gene007426.t1 | AT5G11950 | 66.026 | 156 | 53 | 0 | 58 | 213 | 1 | 156 | 7.11e-75 | 224 |
| MS.gene007426.t1 | AT5G26140 | 52.318 | 151 | 50 | 1 | 85 | 213 | 6 | 156 | 2.22e-47 | 154 |
| MS.gene007426.t1 | AT5G26140 | 51.095 | 137 | 45 | 1 | 99 | 213 | 1 | 137 | 4.90e-40 | 134 |
| MS.gene007426.t1 | AT5G26140 | 54.717 | 106 | 48 | 0 | 108 | 213 | 17 | 122 | 8.55e-36 | 123 |
Find 51 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATTGATCTTGTTTA+TGG | 0.168735 | 7.3:+11764075 | MS.gene007426:CDS |
| TTAACTTATGCAGGTGGATA+TGG | 0.277547 | 7.3:+11766127 | MS.gene007426:intron |
| CAATTCATTGCCAAGGTTCA+TGG | 0.335336 | 7.3:-11763406 | None:intergenic |
| ACAATTATGTGACGAGCATT+TGG | 0.366388 | 7.3:-11766393 | None:intergenic |
| ACTCACGCAATGGTGAAATA+AGG | 0.394030 | 7.3:+11763310 | MS.gene007426:CDS |
| GATGGCGGTCGCCATGTCAT+TGG | 0.405743 | 7.3:+11764144 | MS.gene007426:CDS |
| GTTGGATTAGTAAATGTTGA+TGG | 0.409542 | 7.3:+11766312 | MS.gene007426:CDS |
| CTCTCGAGGCATGAGTGTCT+TGG | 0.437050 | 7.3:-11764375 | None:intergenic |
| ATGGCGGTCGCCATGTCATT+GGG | 0.438706 | 7.3:+11764145 | MS.gene007426:CDS |
| ATTGACAAAGCTGTGGAAGA+AGG | 0.461566 | 7.3:+11766360 | MS.gene007426:CDS |
| TCTCGAGGCATGAGTGTCTT+GGG | 0.468747 | 7.3:-11764374 | None:intergenic |
| CATGAACCTTGGCAATGAAT+TGG | 0.469550 | 7.3:+11763407 | MS.gene007426:CDS |
| TTCCATCTGCCAGCTCAACT+TGG | 0.470523 | 7.3:-11766939 | None:intergenic |
| TTGAGATGTCATAATCTTGA+GGG | 0.471297 | 7.3:-11766976 | None:intergenic |
| GTCATAACATGGGCTCAACT+TGG | 0.475221 | 7.3:+11766172 | MS.gene007426:CDS |
| ATTGATCTTGTTTATGGAGG+AGG | 0.482065 | 7.3:+11764081 | MS.gene007426:CDS |
| CAAGGTTCATGGCAGCATCT+TGG | 0.485744 | 7.3:-11763395 | None:intergenic |
| AAAAGAGTTAGTTAAGAAGT+TGG | 0.487121 | 7.3:+11766431 | MS.gene007426:CDS |
| AGGAGGAAGCATTGGTCTCA+TGG | 0.491447 | 7.3:+11764098 | MS.gene007426:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.504128 | 7.3:+11764090 | MS.gene007426:CDS |
| GTTTCTCAAGCTGTTCATGA+TGG | 0.505960 | 7.3:+11764126 | MS.gene007426:CDS |
| GTGTTGCTTCCAAGTTGAGC+TGG | 0.509075 | 7.3:+11766930 | MS.gene007426:CDS |
| TGCTAAGTGCTAACCTGGTA+AGG | 0.510169 | 7.3:-11764834 | None:intergenic |
| AGAGTTAGTTAAGAAGTTGG+AGG | 0.516344 | 7.3:+11766434 | MS.gene007426:CDS |
| TTGACAAAGCTGTGGAAGAA+GGG | 0.531943 | 7.3:+11766361 | MS.gene007426:CDS |
| AACATTGATCTTGTTTATGG+AGG | 0.533518 | 7.3:+11764078 | MS.gene007426:CDS |
| CAAGATGCTGCCATGAACCT+TGG | 0.535202 | 7.3:+11763396 | MS.gene007426:CDS |
| CTCAAGATTATGACATCTCA+AGG | 0.546895 | 7.3:+11766978 | MS.gene007426:CDS |
| GCATCAAAGGAAAGCTGAGA+TGG | 0.549979 | 7.3:+11764787 | MS.gene007426:CDS |
| GGAGGAAGCATTGGTCTCAT+GGG | 0.550392 | 7.3:+11764099 | MS.gene007426:CDS |
| TACATACCAATTCATTGCCA+AGG | 0.561261 | 7.3:-11763413 | None:intergenic |
| TTCCAAGTTGAGCTGGCAGA+TGG | 0.564883 | 7.3:+11766937 | MS.gene007426:CDS |
| CAGCTAACTGGTGAAACAGT+AGG | 0.567165 | 7.3:+11764740 | MS.gene007426:intron |
| CTGTTGCTGATATGCATCAA+AGG | 0.573128 | 7.3:+11764774 | MS.gene007426:CDS |
| CTTGAGATGTCATAATCTTG+AGG | 0.576949 | 7.3:-11766977 | None:intergenic |
| TAACAAATGGACTCACGCAA+TGG | 0.580220 | 7.3:+11763300 | None:intergenic |
| GAAGCAACACCCTCATGACA+TGG | 0.600653 | 7.3:-11766917 | None:intergenic |
| AACTTCTTGAAGTCATAACA+TGG | 0.604120 | 7.3:+11766161 | MS.gene007426:CDS |
| TACTAGACAAATACCTCTCG+AGG | 0.614675 | 7.3:-11764389 | None:intergenic |
| ACTTGGAATTCATGACAAGC+CGG | 0.616968 | 7.3:+11766189 | MS.gene007426:CDS |
| GGAGTATGTTCCATGTCATG+AGG | 0.617100 | 7.3:+11766907 | MS.gene007426:intron |
| GTTCATGGCAGCATCTTGGT+AGG | 0.620771 | 7.3:-11763391 | None:intergenic |
| TCTCAAGCTGTTCATGATGG+CGG | 0.622957 | 7.3:+11764129 | MS.gene007426:CDS |
| TGAAACAGTAGGAGAAGTGA+AGG | 0.624185 | 7.3:+11764751 | MS.gene007426:CDS |
| CAAGACACTCATGCCTCGAG+AGG | 0.636692 | 7.3:+11764376 | MS.gene007426:CDS |
| GTCATTCATTGACAAAGCTG+TGG | 0.639783 | 7.3:+11766353 | MS.gene007426:CDS |
| GAGTATGTTCCATGTCATGA+GGG | 0.646303 | 7.3:+11766908 | MS.gene007426:CDS |
| GTGTTATATACCCAATGACA+TGG | 0.655296 | 7.3:-11764155 | None:intergenic |
| AGGTGGATATGGAACTCTAG+AGG | 0.671132 | 7.3:+11766138 | MS.gene007426:intron |
| TTTGTCAATGAATGACAACA+AGG | 0.686987 | 7.3:-11766346 | None:intergenic |
| ACTTCTTGAAGTCATAACAT+GGG | 0.690032 | 7.3:+11766162 | MS.gene007426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATATGAAAATGT+CGG | - | chr7.3:11764957-11764976 | None:intergenic | 10.0% |
| !! | TTTAAAAATGAAAGATAAAA+AGG | - | chr7.3:11765098-11765117 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTTTGACAA+TGG | - | chr7.3:11766547-11766566 | None:intergenic | 10.0% |
| !!! | TCCAATATTTTATATTTTAA+GGG | - | chr7.3:11765453-11765472 | None:intergenic | 10.0% |
| !! | ATACTCAAAATAAATTACTT+AGG | - | chr7.3:11765727-11765746 | None:intergenic | 15.0% |
| !! | ATTAATAAGTAGTATACAAT+TGG | - | chr7.3:11766828-11766847 | None:intergenic | 15.0% |
| !! | TCCCTTAAAATATAAAATAT+TGG | + | chr7.3:11765449-11765468 | MS.gene007426:intron | 15.0% |
| !! | TTATCATTTATGAATTAATC+TGG | + | chr7.3:11766268-11766287 | MS.gene007426:intron | 15.0% |
| !!! | AAGATTTGAAATTAATTTAC+AGG | + | chr7.3:11766886-11766905 | MS.gene007426:intron | 15.0% |
| !!! | ATTTTATATTTTAAGGGATA+AGG | - | chr7.3:11765447-11765466 | None:intergenic | 15.0% |
| !!! | GTCCAATATTTTATATTTTA+AGG | - | chr7.3:11765454-11765473 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTGTTTACT+TGG | + | chr7.3:11764968-11764987 | MS.gene007426:intron | 15.0% |
| !!! | TTTTAAAACAACATGATTTA+AGG | - | chr7.3:11765254-11765273 | None:intergenic | 15.0% |
| !! | ACCTTAATATGAAACAAAAA+TGG | - | chr7.3:11763747-11763766 | None:intergenic | 20.0% |
| !! | TACAATTCAGATTATAATCA+TGG | + | chr7.3:11766065-11766084 | MS.gene007426:intron | 20.0% |
| !! | TCCAATGTTTATGATTAATA+AGG | + | chr7.3:11765365-11765384 | MS.gene007426:intron | 20.0% |
| !! | TCCTTATTAATCATAAACAT+TGG | - | chr7.3:11765369-11765388 | None:intergenic | 20.0% |
| !! | TGTTAATTAATGAGTAAAAG+AGG | - | chr7.3:11764314-11764333 | None:intergenic | 20.0% |
| !! | TTATATACAAATCATTCCTT+GGG | - | chr7.3:11765836-11765855 | None:intergenic | 20.0% |
| !! | TTTAATAACAGAAGGTAAAA+GGG | - | chr7.3:11764572-11764591 | None:intergenic | 20.0% |
| !! | TTTATATACAAATCATTCCT+TGG | - | chr7.3:11765837-11765856 | None:intergenic | 20.0% |
| !!! | AAAAATGTTGTTTATGTCTT+TGG | + | chr7.3:11764702-11764721 | MS.gene007426:intron | 20.0% |
| !!! | AACACTTTGATTAATGTTTT+TGG | - | chr7.3:11763707-11763726 | None:intergenic | 20.0% |
| !!! | ACACTTTGATTAATGTTTTT+GGG | - | chr7.3:11763706-11763725 | None:intergenic | 20.0% |
| !!! | GAAACAATTGTTTTTTTCAA+AGG | - | chr7.3:11764933-11764952 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr7.3:11764426-11764445 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr7.3:11764523-11764542 | MS.gene007426:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr7.3:11764431-11764450 | MS.gene007426:intron | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr7.3:11764518-11764537 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTTTCATATTA+AGG | + | chr7.3:11763743-11763762 | MS.gene007426:intron | 20.0% |
| !!! | TTGTTTTTGTTGATTTGATT+TGG | + | chr7.3:11765134-11765153 | MS.gene007426:intron | 20.0% |
| ! | AAAAGAGTTAGTTAAGAAGT+TGG | + | chr7.3:11766431-11766450 | MS.gene007426:CDS | 25.0% |
| ! | AACTCACTTATTGAAAAATG+TGG | - | chr7.3:11763507-11763526 | None:intergenic | 25.0% |
| ! | AAGGTTATATACTCTGTATT+TGG | + | chr7.3:11763636-11763655 | MS.gene007426:intron | 25.0% |
| ! | ACTATACTAACTAAATACCA+TGG | + | chr7.3:11765920-11765939 | MS.gene007426:intron | 25.0% |
| ! | AGAGAACAAAAATTAACACT+TGG | + | chr7.3:11764256-11764275 | MS.gene007426:intron | 25.0% |
| ! | AGATATAGATTCCTCAAAAT+TGG | - | chr7.3:11766230-11766249 | None:intergenic | 25.0% |
| ! | ATAATTACAAACTTGTAGGT+TGG | + | chr7.3:11766294-11766313 | MS.gene007426:intron | 25.0% |
| ! | ATTCAGATTATAATCATGGA+TGG | + | chr7.3:11766069-11766088 | MS.gene007426:intron | 25.0% |
| ! | CTTTAATAACAGAAGGTAAA+AGG | - | chr7.3:11764573-11764592 | None:intergenic | 25.0% |
| ! | GAAACAAGAAAACCAAATAA+CGG | - | chr7.3:11764007-11764026 | None:intergenic | 25.0% |
| ! | GCTTATAATTACAAACTTGT+AGG | + | chr7.3:11766290-11766309 | MS.gene007426:intron | 25.0% |
| ! | TAATTCGTAAACAACTTTCA+TGG | + | chr7.3:11765327-11765346 | MS.gene007426:intron | 25.0% |
| ! | TAGTACACTTTAATAACAGA+AGG | - | chr7.3:11764580-11764599 | None:intergenic | 25.0% |
| ! | TATGATATTGTAGAGAATTG+CGG | + | chr7.3:11765973-11765992 | MS.gene007426:intron | 25.0% |
| ! | TCAAAGTTATTCATTACTTG+TGG | - | chr7.3:11765169-11765188 | None:intergenic | 25.0% |
| ! | TCTAAACATAAGAGAAAATC+AGG | - | chr7.3:11764673-11764692 | None:intergenic | 25.0% |
| ! | TTAATAACAGAAGGTAAAAG+GGG | - | chr7.3:11764571-11764590 | None:intergenic | 25.0% |
| ! | TTGTAACATCAATGTTTGTT+AGG | - | chr7.3:11766050-11766069 | None:intergenic | 25.0% |
| ! | TTTGGGCTTAATGTATATAA+TGG | - | chr7.3:11763689-11763708 | None:intergenic | 25.0% |
| !! | AAAAGAATTTGTGTTTTCTG+TGG | + | chr7.3:11763345-11763364 | MS.gene007426:CDS | 25.0% |
| !! | AACAAAAGTAGTGGAAAAAA+TGG | - | chr7.3:11765529-11765548 | None:intergenic | 25.0% |
| !! | AGTGAATTTCAGTTTTTGTA+AGG | + | chr7.3:11763617-11763636 | MS.gene007426:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr7.3:11764421-11764440 | None:intergenic | 25.0% |
| !! | TACCTATAGTTTTCTTAGTT+AGG | - | chr7.3:11766472-11766491 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr7.3:11764528-11764547 | MS.gene007426:intron | 25.0% |
| !! | TTTCAATAAGTGAGTTGAAA+TGG | + | chr7.3:11763511-11763530 | MS.gene007426:intron | 25.0% |
| !! | TTTCTTTTCTTTCATCACAT+GGG | + | chr7.3:11763935-11763954 | MS.gene007426:intron | 25.0% |
| !! | TTTTCTGAATTAACTTATGC+AGG | + | chr7.3:11766118-11766137 | MS.gene007426:intron | 25.0% |
| !! | TTTTCTTTTCTTTCATCACA+TGG | + | chr7.3:11763934-11763953 | MS.gene007426:intron | 25.0% |
| !!! | ATATTTTAAGGGATAAGGTA+AGG | - | chr7.3:11765442-11765461 | None:intergenic | 25.0% |
| !!! | ATTATCAAGTAAGCTTTGAA+GGG | - | chr7.3:11765399-11765418 | None:intergenic | 25.0% |
| AAAAGAGGTTAACAAAAGCT+TGG | - | chr7.3:11764299-11764318 | None:intergenic | 30.0% | |
| AACTTCTTGAAGTCATAACA+TGG | + | chr7.3:11766161-11766180 | MS.gene007426:CDS | 30.0% | |
| AATGAGGGAAAGTAAAGAAA+AGG | + | chr7.3:11765589-11765608 | MS.gene007426:intron | 30.0% | |
| ACTTCTTGAAGTCATAACAT+GGG | + | chr7.3:11766162-11766181 | MS.gene007426:CDS | 30.0% | |
| ATGAATAACTTTGACTAGTG+TGG | + | chr7.3:11765175-11765194 | MS.gene007426:intron | 30.0% | |
| CAAAGAAAGTGATTTCACAT+GGG | - | chr7.3:11766680-11766699 | None:intergenic | 30.0% | |
| CAGTAGAAAGGTTATTGAAA+AGG | - | chr7.3:11765668-11765687 | None:intergenic | 30.0% | |
| CCACGATTTAAATAAATCCA+TGG | - | chr7.3:11765940-11765959 | None:intergenic | 30.0% | |
| CCATGGATTTATTTAAATCG+TGG | + | chr7.3:11765937-11765956 | MS.gene007426:intron | 30.0% | |
| CTCTCAAAGTTGTACTATTT+GGG | + | chr7.3:11764220-11764239 | MS.gene007426:intron | 30.0% | |
| GTCCTAACTAAGAAAACTAT+AGG | + | chr7.3:11766467-11766486 | MS.gene007426:intron | 30.0% | |
| TCAAAGAAAGTGATTTCACA+TGG | - | chr7.3:11766681-11766700 | None:intergenic | 30.0% | |
| TCTCTCAAAGTTGTACTATT+TGG | + | chr7.3:11764219-11764238 | MS.gene007426:intron | 30.0% | |
| TTGAGATGTCATAATCTTGA+GGG | - | chr7.3:11766979-11766998 | None:intergenic | 30.0% | |
| TTGGACATGTCAATTATTAC+CGG | - | chr7.3:11766211-11766230 | None:intergenic | 30.0% | |
| TTGGATAAACTAGAGGATAT+TGG | - | chr7.3:11766577-11766596 | None:intergenic | 30.0% | |
| TTGTGAGAATCAGATTGAAA+AGG | - | chr7.3:11766643-11766662 | None:intergenic | 30.0% | |
| TTTGTCAATGAATGACAACA+AGG | - | chr7.3:11766349-11766368 | None:intergenic | 30.0% | |
| ! | AACATTGATCTTGTTTATGG+AGG | + | chr7.3:11764078-11764097 | MS.gene007426:CDS | 30.0% |
| ! | AATTGACATGTCCAATTTTG+AGG | + | chr7.3:11766216-11766235 | MS.gene007426:intron | 30.0% |
| ! | AGGAACATTGATCTTGTTTA+TGG | + | chr7.3:11764075-11764094 | MS.gene007426:CDS | 30.0% |
| ! | AGTTTTCAATCACTCTTTCT+TGG | + | chr7.3:11765788-11765807 | MS.gene007426:intron | 30.0% |
| ! | CATTATCAAGTAAGCTTTGA+AGG | - | chr7.3:11765400-11765419 | None:intergenic | 30.0% |
| ! | GTTTTCAATCACTCTTTCTT+GGG | + | chr7.3:11765789-11765808 | MS.gene007426:intron | 30.0% |
| ! | TTAACTAACTCTTTTGCAGT+TGG | - | chr7.3:11766426-11766445 | None:intergenic | 30.0% |
| ! | TTTTAGTCCGTACAAATGTT+TGG | - | chr7.3:11763793-11763812 | None:intergenic | 30.0% |
| !! | ACTTGCTTCATTTGATAATG+AGG | + | chr7.3:11765573-11765592 | MS.gene007426:intron | 30.0% |
| !! | CTTGCTTCATTTGATAATGA+GGG | + | chr7.3:11765574-11765593 | MS.gene007426:intron | 30.0% |
| !! | GTTGGATTAGTAAATGTTGA+TGG | + | chr7.3:11766312-11766331 | MS.gene007426:CDS | 30.0% |
| !!! | TGATGTTGTTTGTTTTGTGA+AGG | + | chr7.3:11764047-11764066 | MS.gene007426:intron | 30.0% |
| !!! | TTTGTTTTGTGAAGGTTTCA+AGG | + | chr7.3:11764055-11764074 | MS.gene007426:intron | 30.0% |
| AAAATTAGTGACAGAGAGAG+TGG | + | chr7.3:11765749-11765768 | MS.gene007426:intron | 35.0% | |
| AACTAGTACTAGCAGTAGAA+AGG | - | chr7.3:11765680-11765699 | None:intergenic | 35.0% | |
| ACAAGAAAACCAAATAACGG+TGG | - | chr7.3:11764004-11764023 | None:intergenic | 35.0% | |
| ACAATTATGTGACGAGCATT+TGG | - | chr7.3:11766396-11766415 | None:intergenic | 35.0% | |
| AGAGTTAGTTAAGAAGTTGG+AGG | + | chr7.3:11766434-11766453 | MS.gene007426:CDS | 35.0% | |
| CACTGTTCAAACAAAAGTAG+TGG | - | chr7.3:11765538-11765557 | None:intergenic | 35.0% | |
| CGCTCAAAATTTGATGTATC+TGG | + | chr7.3:11764606-11764625 | MS.gene007426:intron | 35.0% | |
| CTCAAGATTATGACATCTCA+AGG | + | chr7.3:11766978-11766997 | MS.gene007426:CDS | 35.0% | |
| CTCTGAACCAAACATTTGTA+CGG | + | chr7.3:11763783-11763802 | MS.gene007426:intron | 35.0% | |
| CTTGAGATGTCATAATCTTG+AGG | - | chr7.3:11766980-11766999 | None:intergenic | 35.0% | |
| GAAAAGGATGAAACAATGTC+AGG | - | chr7.3:11765652-11765671 | None:intergenic | 35.0% | |
| GAACTTCTTGGATAAACTAG+AGG | - | chr7.3:11766584-11766603 | None:intergenic | 35.0% | |
| GAAGGTAAAAAGTGAGAAGA+AGG | - | chr7.3:11763860-11763879 | None:intergenic | 35.0% | |
| GTGTTATATACCCAATGACA+TGG | - | chr7.3:11764158-11764177 | None:intergenic | 35.0% | |
| GTTTGATGTAGCTTCAATTG+TGG | + | chr7.3:11766004-11766023 | MS.gene007426:intron | 35.0% | |
| TACATACCAATTCATTGCCA+AGG | - | chr7.3:11763416-11763435 | None:intergenic | 35.0% | |
| TATTTGTCTAGTACTTCCTC+CGG | + | chr7.3:11764399-11764418 | MS.gene007426:intron | 35.0% | |
| TCCAAATGTAGCTATGGATA+TGG | - | chr7.3:11765889-11765908 | None:intergenic | 35.0% | |
| TCTGAATTAACTTATGCAGG+TGG | + | chr7.3:11766121-11766140 | MS.gene007426:intron | 35.0% | |
| TCTGATCAACTATATGGTTC+AGG | + | chr7.3:11765496-11765515 | MS.gene007426:intron | 35.0% | |
| TGTGTCTCTGATCAACTATA+TGG | + | chr7.3:11765490-11765509 | MS.gene007426:intron | 35.0% | |
| TTAACTTATGCAGGTGGATA+TGG | + | chr7.3:11766127-11766146 | MS.gene007426:intron | 35.0% | |
| TTAAGGGATAAGGTAAGGTA+AGG | - | chr7.3:11765437-11765456 | None:intergenic | 35.0% | |
| TTATTTAAATCGTGGTCGCA+TGG | + | chr7.3:11765945-11765964 | MS.gene007426:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr7.3:11764532-11764551 | MS.gene007426:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr7.3:11764531-11764550 | MS.gene007426:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr7.3:11764550-11764531 | None:intergenic | 35.0% | |
| TTTGTGTCCAAATGTAGCTA+TGG | - | chr7.3:11765895-11765914 | None:intergenic | 35.0% | |
| ! | AACTGTTGTTGTGTTTTGTG+GGG | + | chr7.3:11765055-11765074 | MS.gene007426:intron | 35.0% |
| ! | ATTGATCTTGTTTATGGAGG+AGG | + | chr7.3:11764081-11764100 | MS.gene007426:CDS | 35.0% |
| ! | CAACTGTTGTTGTGTTTTGT+GGG | + | chr7.3:11765054-11765073 | MS.gene007426:intron | 35.0% |
| ! | CCTAAGAAAATTGATTCCCA+AGG | + | chr7.3:11765817-11765836 | MS.gene007426:intron | 35.0% |
| ! | CCTTGGGAATCAATTTTCTT+AGG | - | chr7.3:11765820-11765839 | None:intergenic | 35.0% |
| ! | GTGAGTTGAAATGGTGTATA+TGG | + | chr7.3:11763520-11763539 | MS.gene007426:intron | 35.0% |
| ! | GTTTGAAGCAATGAGAAAAG+AGG | - | chr7.3:11765298-11765317 | None:intergenic | 35.0% |
| ! | TGGGAATCAATTTTCTTAGG+AGG | - | chr7.3:11765817-11765836 | None:intergenic | 35.0% |
| !! | CACTACTTTTGTTTGAACAG+TGG | + | chr7.3:11765536-11765555 | MS.gene007426:intron | 35.0% |
| !! | CTTTGAAATGCAAACAGTGA+AGG | - | chr7.3:11763878-11763897 | None:intergenic | 35.0% |
| !!! | TGGTAGGTAGTTTTTTTACC+AGG | - | chr7.3:11763378-11763397 | None:intergenic | 35.0% |
| !!! | TGGTTGCTTTTTAGACAGAA+TGG | + | chr7.3:11764988-11765007 | MS.gene007426:intron | 35.0% |
| AAACACTGGCAAGAACTTCT+TGG | - | chr7.3:11766596-11766615 | None:intergenic | 40.0% | |
| AAGTTCTTGCCAGTGTTTGT+TGG | + | chr7.3:11766598-11766617 | MS.gene007426:intron | 40.0% | |
| ACTCACGCAATGGTGAAATA+AGG | + | chr7.3:11763310-11763329 | MS.gene007426:CDS | 40.0% | |
| ACTTGGAATTCATGACAAGC+CGG | + | chr7.3:11766189-11766208 | MS.gene007426:CDS | 40.0% | |
| ATTGACAAAGCTGTGGAAGA+AGG | + | chr7.3:11766360-11766379 | MS.gene007426:CDS | 40.0% | |
| CAATTCATTGCCAAGGTTCA+TGG | - | chr7.3:11763409-11763428 | None:intergenic | 40.0% | |
| CATGAACCTTGGCAATGAAT+TGG | + | chr7.3:11763407-11763426 | MS.gene007426:CDS | 40.0% | |
| CCACAAAACACAACAACAGT+TGG | - | chr7.3:11765056-11765075 | None:intergenic | 40.0% | |
| CCATTCATTGAGGACAAGAA+AGG | + | chr7.3:11765199-11765218 | MS.gene007426:intron | 40.0% | |
| CCTTTCTTGTCCTCAATGAA+TGG | - | chr7.3:11765202-11765221 | None:intergenic | 40.0% | |
| CTGTTGCTGATATGCATCAA+AGG | + | chr7.3:11764774-11764793 | MS.gene007426:CDS | 40.0% | |
| GAGTATGTTCCATGTCATGA+GGG | + | chr7.3:11766908-11766927 | MS.gene007426:CDS | 40.0% | |
| GCCATATCCATAGCTACATT+TGG | + | chr7.3:11765885-11765904 | MS.gene007426:intron | 40.0% | |
| GTAATAGTGCCAACAAACAC+TGG | - | chr7.3:11766610-11766629 | None:intergenic | 40.0% | |
| GTCATTCATTGACAAAGCTG+TGG | + | chr7.3:11766353-11766372 | MS.gene007426:CDS | 40.0% | |
| GTTTCTCAAGCTGTTCATGA+TGG | + | chr7.3:11764126-11764145 | MS.gene007426:CDS | 40.0% | |
| TACTAGACAAATACCTCTCG+AGG | - | chr7.3:11764392-11764411 | None:intergenic | 40.0% | |
| TCATAGTCACCACCGTTATT+TGG | + | chr7.3:11763992-11764011 | MS.gene007426:intron | 40.0% | |
| TGAAACAGTAGGAGAAGTGA+AGG | + | chr7.3:11764751-11764770 | MS.gene007426:CDS | 40.0% | |
| TTGACAAAGCTGTGGAAGAA+GGG | + | chr7.3:11766361-11766380 | MS.gene007426:CDS | 40.0% | |
| ! | CCAACTGTTGTTGTGTTTTG+TGG | + | chr7.3:11765053-11765072 | MS.gene007426:intron | 40.0% |
| ! | GATGCTTTTATTGCCTTACC+AGG | + | chr7.3:11764821-11764840 | MS.gene007426:CDS | 40.0% |
| ! | GGTTAAACTTTTACTCCCTC+CGG | - | chr7.3:11764550-11764569 | None:intergenic | 40.0% |
| ! | TGTTTGTTAGGTCTATGCGA+CGG | - | chr7.3:11766038-11766057 | None:intergenic | 40.0% |
| !!! | GATGTCATTTTGCAGCTAAC+TGG | + | chr7.3:11764728-11764747 | MS.gene007426:intron | 40.0% |
| AGGTGGATATGGAACTCTAG+AGG | + | chr7.3:11766138-11766157 | MS.gene007426:intron | 45.0% | |
| ATTAGTGACAGAGAGAGTGG+AGG | + | chr7.3:11765752-11765771 | MS.gene007426:intron | 45.0% | |
| CAGCTAACTGGTGAAACAGT+AGG | + | chr7.3:11764740-11764759 | MS.gene007426:intron | 45.0% | |
| CTAGTGTGGTCCATTCATTG+AGG | + | chr7.3:11765189-11765208 | MS.gene007426:intron | 45.0% | |
| CTATGGATATGGCAGTGTCA+GGG | - | chr7.3:11765878-11765897 | None:intergenic | 45.0% | |
| GATGAAACAATGTCAGGTGC+AGG | - | chr7.3:11765646-11765665 | None:intergenic | 45.0% | |
| GCATCAAAGGAAAGCTGAGA+TGG | + | chr7.3:11764787-11764806 | MS.gene007426:CDS | 45.0% | |
| GGAGTATGTTCCATGTCATG+AGG | + | chr7.3:11766907-11766926 | MS.gene007426:intron | 45.0% | |
| GTCATAACATGGGCTCAACT+TGG | + | chr7.3:11766172-11766191 | MS.gene007426:CDS | 45.0% | |
| TATGGATATGGCAGTGTCAG+GGG | - | chr7.3:11765877-11765896 | None:intergenic | 45.0% | |
| TCTCAAGCTGTTCATGATGG+CGG | + | chr7.3:11764129-11764148 | MS.gene007426:CDS | 45.0% | |
| TGCTAAGTGCTAACCTGGTA+AGG | - | chr7.3:11764837-11764856 | None:intergenic | 45.0% | |
| TTGCATGCTAAGTGCTAACC+TGG | - | chr7.3:11764842-11764861 | None:intergenic | 45.0% | |
| TTTAAATCGTGGTCGCATGG+CGG | + | chr7.3:11765948-11765967 | MS.gene007426:intron | 45.0% | |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | + | chr7.3:11764090-11764109 | MS.gene007426:CDS | 45.0% |
| ! | GTTTTCTGTGGAAGTAGTCC+TGG | + | chr7.3:11763357-11763376 | MS.gene007426:CDS | 45.0% |
| ATATGGCAGTGTCAGGGGAA+AGG | - | chr7.3:11765872-11765891 | None:intergenic | 50.0% | |
| CAAGATGCTGCCATGAACCT+TGG | + | chr7.3:11763396-11763415 | MS.gene007426:CDS | 50.0% | |
| CAAGGTTCATGGCAGCATCT+TGG | - | chr7.3:11763398-11763417 | None:intergenic | 50.0% | |
| GAAGCAACACCCTCATGACA+TGG | - | chr7.3:11766920-11766939 | None:intergenic | 50.0% | |
| GCTATGGATATGGCAGTGTC+AGG | - | chr7.3:11765879-11765898 | None:intergenic | 50.0% | |
| GTTCATGGCAGCATCTTGGT+AGG | - | chr7.3:11763394-11763413 | None:intergenic | 50.0% | |
| TCTCGAGGCATGAGTGTCTT+GGG | - | chr7.3:11764377-11764396 | None:intergenic | 50.0% | |
| TGTCAGGTGCAGGTGCTAAT+TGG | - | chr7.3:11765636-11765655 | None:intergenic | 50.0% | |
| TTCCATCTGCCAGCTCAACT+TGG | - | chr7.3:11766942-11766961 | None:intergenic | 50.0% | |
| ! | TTCCAAGTTGAGCTGGCAGA+TGG | + | chr7.3:11766937-11766956 | MS.gene007426:CDS | 50.0% |
| !! | AGGAGGAAGCATTGGTCTCA+TGG | + | chr7.3:11764098-11764117 | MS.gene007426:CDS | 50.0% |
| !! | GGAGGAAGCATTGGTCTCAT+GGG | + | chr7.3:11764099-11764118 | MS.gene007426:CDS | 50.0% |
| !! | GTGTTGCTTCCAAGTTGAGC+TGG | + | chr7.3:11766930-11766949 | MS.gene007426:CDS | 50.0% |
| ATGGCGGTCGCCATGTCATT+GGG | + | chr7.3:11764145-11764164 | MS.gene007426:CDS | 55.0% | |
| CAAGACACTCATGCCTCGAG+AGG | + | chr7.3:11764376-11764395 | MS.gene007426:CDS | 55.0% | |
| CTCTCGAGGCATGAGTGTCT+TGG | - | chr7.3:11764378-11764397 | None:intergenic | 55.0% | |
| ! | GATGGCGGTCGCCATGTCAT+TGG | + | chr7.3:11764144-11764163 | MS.gene007426:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 11763306 | 11767003 | 11763306 | ID=MS.gene007426 |
| chr7.3 | mRNA | 11763306 | 11767003 | 11763306 | ID=MS.gene007426.t1;Parent=MS.gene007426 |
| chr7.3 | exon | 11763306 | 11763428 | 11763306 | ID=MS.gene007426.t1.exon1;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11763306 | 11763428 | 11763306 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| chr7.3 | exon | 11764069 | 11764166 | 11764069 | ID=MS.gene007426.t1.exon2;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11764069 | 11764166 | 11764069 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| chr7.3 | exon | 11764367 | 11764397 | 11764367 | ID=MS.gene007426.t1.exon3;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11764367 | 11764397 | 11764367 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| chr7.3 | exon | 11764743 | 11764842 | 11764743 | ID=MS.gene007426.t1.exon4;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11764743 | 11764842 | 11764743 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| chr7.3 | exon | 11766140 | 11766210 | 11766140 | ID=MS.gene007426.t1.exon5;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11766140 | 11766210 | 11766140 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| chr7.3 | exon | 11766312 | 11766455 | 11766312 | ID=MS.gene007426.t1.exon6;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11766312 | 11766455 | 11766312 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| chr7.3 | exon | 11766908 | 11767003 | 11766908 | ID=MS.gene007426.t1.exon7;Parent=MS.gene007426.t1 |
| chr7.3 | CDS | 11766908 | 11767003 | 11766908 | ID=cds.MS.gene007426.t1;Parent=MS.gene007426.t1 |
| Gene Sequence |
| Protein sequence |
