Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016181.t1 | XP_003588965.1 | 99.5 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 4.60E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016181.t1 | Q84MC2 | 79.3 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 8.5e-95 | 347.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016181.t1 | G7I9V5 | 99.5 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 3.3e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050128 | MS.gene016181 | PPI |
| MS.gene007426 | MS.gene016181 | PPI |
| MS.gene08753 | MS.gene016181 | PPI |
| MS.gene08691 | MS.gene016181 | PPI |
| MS.gene007521 | MS.gene016181 | PPI |
| MS.gene016181 | MS.gene028695 | PPI |
| MS.gene24610 | MS.gene016181 | PPI |
| MS.gene016181 | MS.gene20068 | PPI |
| MS.gene22428 | MS.gene016181 | PPI |
| MS.gene007681 | MS.gene016181 | PPI |
| MS.gene016181 | MS.gene055648 | PPI |
| MS.gene31266 | MS.gene016181 | PPI |
| MS.gene029824 | MS.gene016181 | PPI |
| MS.gene034799 | MS.gene016181 | PPI |
| MS.gene016181 | MS.gene41079 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016181.t1 | MTR_1g015830 | 99.533 | 214 | 1 | 0 | 1 | 214 | 1 | 214 | 5.95e-159 | 438 |
| MS.gene016181.t1 | MTR_1g015830 | 100.000 | 162 | 0 | 0 | 53 | 214 | 1 | 162 | 4.77e-118 | 332 |
| MS.gene016181.t1 | MTR_1g064260 | 66.990 | 206 | 68 | 0 | 7 | 212 | 11 | 216 | 2.73e-103 | 297 |
| MS.gene016181.t1 | MTR_7g101290 | 67.327 | 202 | 66 | 0 | 7 | 208 | 12 | 213 | 1.21e-102 | 296 |
| MS.gene016181.t1 | MTR_0041s0100 | 67.327 | 202 | 66 | 0 | 7 | 208 | 12 | 213 | 1.21e-102 | 296 |
| MS.gene016181.t1 | MTR_2g094790 | 68.687 | 198 | 62 | 0 | 7 | 204 | 11 | 208 | 1.55e-102 | 295 |
| MS.gene016181.t1 | MTR_4g058740 | 69.036 | 197 | 61 | 0 | 8 | 204 | 12 | 208 | 2.96e-102 | 294 |
| MS.gene016181.t1 | MTR_3g113710 | 69.036 | 197 | 61 | 0 | 7 | 203 | 13 | 209 | 1.11e-100 | 291 |
| MS.gene016181.t1 | MTR_1g057020 | 62.441 | 213 | 79 | 1 | 1 | 213 | 1 | 212 | 9.91e-98 | 283 |
| MS.gene016181.t1 | MTR_3g113710 | 70.787 | 178 | 52 | 0 | 7 | 184 | 13 | 190 | 8.36e-92 | 269 |
| MS.gene016181.t1 | MTR_1g064260 | 65.625 | 160 | 55 | 0 | 53 | 212 | 1 | 160 | 1.56e-75 | 225 |
| MS.gene016181.t1 | MTR_3g113710 | 70.896 | 134 | 39 | 0 | 70 | 203 | 10 | 143 | 2.22e-67 | 204 |
| MS.gene016181.t1 | MTR_1g024145 | 67.647 | 102 | 33 | 0 | 25 | 126 | 151 | 252 | 1.55e-43 | 147 |
| MS.gene016181.t1 | MTR_1g024850 | 63.380 | 71 | 26 | 0 | 5 | 75 | 13 | 83 | 1.83e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016181.t1 | AT5G11950 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.20e-126 | 355 |
| MS.gene016181.t1 | AT5G11950 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.20e-126 | 355 |
| MS.gene016181.t1 | AT5G11950 | 79.343 | 213 | 43 | 1 | 1 | 212 | 1 | 213 | 2.20e-126 | 355 |
| MS.gene016181.t1 | AT2G28305 | 69.756 | 205 | 62 | 0 | 7 | 211 | 6 | 210 | 1.69e-107 | 308 |
| MS.gene016181.t1 | AT2G37210 | 65.854 | 205 | 69 | 1 | 7 | 211 | 12 | 215 | 2.16e-103 | 297 |
| MS.gene016181.t1 | AT5G06300 | 63.551 | 214 | 77 | 1 | 1 | 213 | 1 | 214 | 3.98e-101 | 292 |
| MS.gene016181.t1 | AT3G53450 | 66.162 | 198 | 67 | 0 | 7 | 204 | 12 | 209 | 6.33e-100 | 289 |
| MS.gene016181.t1 | AT2G37210 | 58.515 | 229 | 70 | 2 | 7 | 211 | 12 | 239 | 2.27e-97 | 283 |
| MS.gene016181.t1 | AT2G28305 | 73.034 | 178 | 48 | 0 | 7 | 184 | 6 | 183 | 7.10e-97 | 280 |
| MS.gene016181.t1 | AT5G11950 | 81.875 | 160 | 29 | 0 | 53 | 212 | 1 | 160 | 5.52e-96 | 277 |
| MS.gene016181.t1 | AT2G35990 | 62.500 | 200 | 75 | 0 | 1 | 200 | 1 | 200 | 7.30e-95 | 276 |
| MS.gene016181.t1 | AT5G03270 | 66.310 | 187 | 63 | 0 | 5 | 191 | 15 | 201 | 2.34e-93 | 271 |
| MS.gene016181.t1 | AT4G35190 | 62.069 | 203 | 77 | 0 | 1 | 203 | 1 | 203 | 1.05e-91 | 268 |
| MS.gene016181.t1 | AT5G03270 | 67.033 | 182 | 60 | 0 | 5 | 186 | 15 | 196 | 5.14e-91 | 265 |
| MS.gene016181.t1 | AT4G35190 | 63.918 | 194 | 68 | 1 | 1 | 194 | 1 | 192 | 1.57e-87 | 257 |
| MS.gene016181.t1 | AT2G28305 | 73.134 | 134 | 36 | 0 | 7 | 140 | 6 | 139 | 4.50e-71 | 213 |
| MS.gene016181.t1 | AT2G35990 | 60.135 | 148 | 59 | 0 | 53 | 200 | 1 | 148 | 2.34e-64 | 196 |
| MS.gene016181.t1 | AT2G35990 | 60.135 | 148 | 59 | 0 | 53 | 200 | 1 | 148 | 2.34e-64 | 196 |
| MS.gene016181.t1 | AT5G26140 | 66.225 | 151 | 29 | 1 | 80 | 208 | 6 | 156 | 3.07e-62 | 191 |
| MS.gene016181.t1 | AT5G26140 | 63.504 | 137 | 28 | 1 | 94 | 208 | 1 | 137 | 6.85e-53 | 167 |
| MS.gene016181.t1 | AT5G26140 | 69.608 | 102 | 31 | 0 | 107 | 208 | 21 | 122 | 2.72e-46 | 149 |
Find 52 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATAGATTTGGTTTA+TGG | 0.161614 | 1.4:+6484584 | MS.gene016181:CDS |
| CATCTTCAACATAAGTTCTT+TGG | 0.223030 | 1.4:-6486093 | None:intergenic |
| TGGAACTATGGAAGAGCTTC+TGG | 0.266363 | 1.4:+6485825 | MS.gene016181:CDS |
| TCCTCATAATCAGGAGGATA+TGG | 0.292672 | 1.4:+6485805 | MS.gene016181:intron |
| AATGGTGGTTGTCATGTTCT+AGG | 0.326103 | 1.4:+6484653 | MS.gene016181:CDS |
| TCATGCGGCATGAGAGCTTT+TGG | 0.330366 | 1.4:-6485050 | None:intergenic |
| TGGTGGAAGTGTTGGATTGA+TGG | 0.341974 | 1.4:+6484607 | MS.gene016181:CDS |
| GGTTAAGAGGAACATAGATT+TGG | 0.375088 | 1.4:+6484577 | MS.gene016181:intron |
| GGTGGAAGTGTTGGATTGAT+GGG | 0.382799 | 1.4:+6484608 | MS.gene016181:CDS |
| ACTGAAAACATGGCGGTTGC+CGG | 0.398415 | 1.4:-6484123 | None:intergenic |
| GGTTTGTGTTTCAGGTTAAG+AGG | 0.417871 | 1.4:+6484564 | MS.gene016181:intron |
| AGCTGGCAGATGAAGCAATT+AGG | 0.429412 | 1.4:+6486765 | MS.gene016181:CDS |
| ATCAGGAGGATATGGAACTA+TGG | 0.439372 | 1.4:+6485813 | MS.gene016181:intron |
| ATAGATTTGGTTTATGGTGG+TGG | 0.456028 | 1.4:+6484590 | MS.gene016181:CDS |
| AAGGAAGCAGAAAGTTCAAA+AGG | 0.460142 | 1.4:+6484075 | MS.gene016181:CDS |
| AACATAGATTTGGTTTATGG+TGG | 0.467733 | 1.4:+6484587 | MS.gene016181:CDS |
| GTTTATGGTGGTGGAAGTGT+TGG | 0.468866 | 1.4:+6484599 | MS.gene016181:CDS |
| AGCTTCTGGAGATGATAACT+TGG | 0.479259 | 1.4:+6485839 | MS.gene016181:CDS |
| GTCTTCTGCGGCAGCAACTC+CGG | 0.499932 | 1.4:+6484104 | MS.gene016181:CDS |
| ATGATAACTTGGGCTCAACT+TGG | 0.508240 | 1.4:+6485850 | MS.gene016181:CDS |
| GACAACTATACTCCGAGCAC+TGG | 0.509009 | 1.4:-6486057 | None:intergenic |
| TTTGACAATGGTGTTGAAGA+AGG | 0.509776 | 1.4:+6486023 | MS.gene016181:CDS |
| CATGAGGGGCTACATGCTCA+TGG | 0.510740 | 1.4:-6486740 | None:intergenic |
| GTGAAGCAGTAGGTGAAGTA+AGG | 0.514214 | 1.4:+6485521 | MS.gene016181:CDS |
| ATGGTGGTTGTCATGTTCTA+GGG | 0.515119 | 1.4:+6484654 | MS.gene016181:CDS |
| TTCATCTGCCAGCTCTCATG+AGG | 0.517501 | 1.4:-6486756 | None:intergenic |
| AAGTTCATCTGCTAATTGAA+TGG | 0.518634 | 1.4:-6484153 | None:intergenic |
| GTTGGCCTACTGAATGTTGA+TGG | 0.518897 | 1.4:+6485975 | MS.gene016181:CDS |
| TCATCTGCCAGCTCTCATGA+GGG | 0.519557 | 1.4:-6486755 | None:intergenic |
| CAAAGAACTTATGTTGAAGA+TGG | 0.528044 | 1.4:+6486094 | MS.gene016181:CDS |
| TTGCTTGCATTGTTTGACAA+TGG | 0.530752 | 1.4:+6486011 | MS.gene016181:CDS |
| AGGAAGCAGAAAGTTCAAAA+GGG | 0.552817 | 1.4:+6484076 | MS.gene016181:CDS |
| AGAACTTATGTTGAAGATGG+AGG | 0.558261 | 1.4:+6486097 | MS.gene016181:CDS |
| ATGTAGCCCCTCATGAGAGC+TGG | 0.566155 | 1.4:+6486748 | MS.gene016181:CDS |
| CAGATATCTGGTGAAGCAGT+AGG | 0.570380 | 1.4:+6485511 | MS.gene016181:intron |
| TGCAATGGCTCAAGAAGCTG+AGG | 0.570924 | 1.4:+6485573 | MS.gene016181:CDS |
| AAGCAATTAGGCAATTATCC+AGG | 0.578634 | 1.4:+6486777 | MS.gene016181:CDS |
| GAGGCATTTATTGCACTCCC+TGG | 0.581953 | 1.4:+6485592 | MS.gene016181:CDS |
| ACAACTATACTCCGAGCACT+GGG | 0.596880 | 1.4:-6486056 | None:intergenic |
| TGGCGGCGTCACTGAAAACA+TGG | 0.602579 | 1.4:-6484133 | None:intergenic |
| GCATGAGAGAAAAGCTGCAA+TGG | 0.603274 | 1.4:+6485558 | MS.gene016181:CDS |
| ATGAGGGGCTACATGCTCAT+GGG | 0.605666 | 1.4:-6486739 | None:intergenic |
| AAAAGCTCTCATGCCGCATG+AGG | 0.606750 | 1.4:+6485052 | MS.gene016181:CDS |
| CATCTGCCAGCTCTCATGAG+GGG | 0.620200 | 1.4:-6486754 | None:intergenic |
| AGTAACCATCAACATTCAGT+AGG | 0.622543 | 1.4:-6485980 | None:intergenic |
| GCTTCTGGAGATGATAACTT+GGG | 0.623818 | 1.4:+6485840 | MS.gene016181:CDS |
| GATTCATTAAGCCCAGTGCT+CGG | 0.627959 | 1.4:+6486045 | MS.gene016181:CDS |
| GGGGCTACATGCTCATGGGA+AGG | 0.637642 | 1.4:-6486735 | None:intergenic |
| AGTAGCACAAATACCTCATG+CGG | 0.657014 | 1.4:-6485065 | None:intergenic |
| TTCATCTGCTAATTGAATGG+CGG | 0.661275 | 1.4:-6484150 | None:intergenic |
| AAAAGGGTATGTGTCTTCTG+CGG | 0.690009 | 1.4:+6484092 | MS.gene016181:CDS |
| CGGCGTCACTGAAAACATGG+CGG | 0.784838 | 1.4:-6484130 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATA+AGG | - | chr1.4:6486147-6486166 | None:intergenic | 0.0% |
| !! | TATTATTATTATTATGTGAA+AGG | + | chr1.4:6486162-6486181 | MS.gene016181:intron | 10.0% |
| !! | ATATCTCAAAAAATGTATAA+TGG | + | chr1.4:6484635-6484654 | MS.gene016181:CDS | 15.0% |
| !! | TAATAATAATAAGGTAAAAG+TGG | - | chr1.4:6486138-6486157 | None:intergenic | 15.0% |
| !!! | ATTGTATTTTTCTTAATCTT+TGG | + | chr1.4:6484217-6484236 | MS.gene016181:intron | 15.0% |
| !!! | TTTTATATAAAAGTGTATCT+GGG | + | chr1.4:6484287-6484306 | MS.gene016181:intron | 15.0% |
| !!! | TTTTTATATAAAAGTGTATC+TGG | + | chr1.4:6484286-6484305 | MS.gene016181:intron | 15.0% |
| !!! | TTTTTATGTGTTTTGTTTTA+TGG | + | chr1.4:6484543-6484562 | MS.gene016181:intron | 15.0% |
| !! | AATAAGCTTAAAACATCTTA+TGG | + | chr1.4:6486389-6486408 | MS.gene016181:intron | 20.0% |
| !! | ATAAGTGTTTATATGCTATA+AGG | - | chr1.4:6484764-6484783 | None:intergenic | 20.0% |
| !! | TCTGATATTGTGTTAATTAA+AGG | + | chr1.4:6486674-6486693 | MS.gene016181:intron | 20.0% |
| !! | TGGATAAACAACTTAATTAA+GGG | + | chr1.4:6486285-6486304 | MS.gene016181:intron | 20.0% |
| !! | TTGGATAAACAACTTAATTA+AGG | + | chr1.4:6486284-6486303 | MS.gene016181:intron | 20.0% |
| !!! | AACTTTTTGAGTTTGAAAAT+TGG | - | chr1.4:6486615-6486634 | None:intergenic | 20.0% |
| !!! | AGAGAATATTTGCTTTTTTT+GGG | + | chr1.4:6484324-6484343 | MS.gene016181:intron | 20.0% |
| !!! | CTTGTAATTTCTTATTTGTA+TGG | - | chr1.4:6485277-6485296 | None:intergenic | 20.0% |
| ! | AAACATTAACATTTCACACA+TGG | - | chr1.4:6484458-6484477 | None:intergenic | 25.0% |
| ! | AATAACACAGATCTTACAAA+GGG | - | chr1.4:6484979-6484998 | None:intergenic | 25.0% |
| ! | ACTTGGAATTCATAAAAAAC+CGG | + | chr1.4:6485867-6485886 | MS.gene016181:CDS | 25.0% |
| ! | AGAGTAATGTAAATTACTGT+TGG | - | chr1.4:6486657-6486676 | None:intergenic | 25.0% |
| ! | TCTCAAAAAATGTATAATGG+TGG | + | chr1.4:6484638-6484657 | MS.gene016181:CDS | 25.0% |
| ! | TTATGACATTTGACAATCAA+AGG | + | chr1.4:6485219-6485238 | MS.gene016181:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1.4:6486282-6486301 | None:intergenic | 25.0% |
| !! | ATTTTCATGAGACTTGATAT+AGG | - | chr1.4:6486478-6486497 | None:intergenic | 25.0% |
| !! | TACTTTGTTGATAAAATGCT+TGG | + | chr1.4:6485904-6485923 | MS.gene016181:intron | 25.0% |
| !! | TGTAGTGTGATAATGTTAAT+AGG | + | chr1.4:6486542-6486561 | MS.gene016181:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1.4:6486281-6486300 | None:intergenic | 25.0% |
| !! | TTTGATAATAGTTTATCGTC+TGG | + | chr1.4:6485186-6485205 | MS.gene016181:intron | 25.0% |
| !! | TTTTCATGAGACTTGATATA+GGG | - | chr1.4:6486477-6486496 | None:intergenic | 25.0% |
| !!! | CAGAGAATATTTGCTTTTTT+TGG | + | chr1.4:6484323-6484342 | MS.gene016181:intron | 25.0% |
| !!! | TCTTTTATTTTTCGTGCATT+GGG | + | chr1.4:6485724-6485743 | MS.gene016181:intron | 25.0% |
| !!! | TTCTTTTATTTTTCGTGCAT+TGG | + | chr1.4:6485723-6485742 | MS.gene016181:intron | 25.0% |
| AAATTACAAGAATGTTAGCG+AGG | + | chr1.4:6485287-6485306 | MS.gene016181:intron | 30.0% | |
| AAGTAACATCATAACGTTAC+CGG | - | chr1.4:6485889-6485908 | None:intergenic | 30.0% | |
| AAGTTCATCTGCTAATTGAA+TGG | - | chr1.4:6484156-6484175 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCGAAC+AGG | - | chr1.4:6484736-6484755 | None:intergenic | 30.0% | |
| AATGTAGAGTAGTACATATC+AGG | - | chr1.4:6485018-6485037 | None:intergenic | 30.0% | |
| AATTACAAGAATGTTAGCGA+GGG | + | chr1.4:6485288-6485307 | MS.gene016181:intron | 30.0% | |
| ATAAGTTGTTTATCCGAACA+GGG | - | chr1.4:6484735-6484754 | None:intergenic | 30.0% | |
| ATGTACTACTCTACATTTAC+AGG | + | chr1.4:6485021-6485040 | MS.gene016181:intron | 30.0% | |
| CAAAGAACTTATGTTGAAGA+TGG | + | chr1.4:6486094-6486113 | MS.gene016181:CDS | 30.0% | |
| CAATAACACAGATCTTACAA+AGG | - | chr1.4:6484980-6484999 | None:intergenic | 30.0% | |
| CATCTTCAACATAAGTTCTT+TGG | - | chr1.4:6486096-6486115 | None:intergenic | 30.0% | |
| CGAACTAACTACTATCATAA+AGG | - | chr1.4:6485417-6485436 | None:intergenic | 30.0% | |
| GAGTTTATTTGAAGAGCTTA+TGG | - | chr1.4:6486433-6486452 | None:intergenic | 30.0% | |
| GGGTCAACATATGATTATAA+CGG | - | chr1.4:6485936-6485955 | None:intergenic | 30.0% | |
| TAACACTATAACAGTTACAC+AGG | - | chr1.4:6485095-6485114 | None:intergenic | 30.0% | |
| TCATCTTAGTATGCTGTAAT+TGG | + | chr1.4:6485478-6485497 | MS.gene016181:intron | 30.0% | |
| TGAAAATAACTTGACAGACA+TGG | - | chr1.4:6486323-6486342 | None:intergenic | 30.0% | |
| TGTACTACTCTACATTTACA+GGG | + | chr1.4:6485022-6485041 | MS.gene016181:intron | 30.0% | |
| TTTGATCTCTAGCAATGAAT+TGG | + | chr1.4:6485157-6485176 | MS.gene016181:intron | 30.0% | |
| ! | AACATAGATTTGGTTTATGG+TGG | + | chr1.4:6484587-6484606 | MS.gene016181:CDS | 30.0% |
| ! | AACTCTTTGAAGAGTTATTC+AGG | - | chr1.4:6485623-6485642 | None:intergenic | 30.0% |
| ! | AGGAACATAGATTTGGTTTA+TGG | + | chr1.4:6484584-6484603 | MS.gene016181:CDS | 30.0% |
| ! | ATATAAAAGTGTATCTGGGT+AGG | + | chr1.4:6484291-6484310 | MS.gene016181:intron | 30.0% |
| ! | CTTCTGATAATGACCTATTT+GGG | + | chr1.4:6485375-6485394 | MS.gene016181:intron | 30.0% |
| ! | GTGTACAGAAACATTGATTA+AGG | + | chr1.4:6484505-6484524 | MS.gene016181:intron | 30.0% |
| ! | GTTGTTGATTGATATCACTT+TGG | + | chr1.4:6484709-6484728 | MS.gene016181:intron | 30.0% |
| ! | TCTTCTGATAATGACCTATT+TGG | + | chr1.4:6485374-6485393 | MS.gene016181:intron | 30.0% |
| ! | TGTTTTCATATAAGCTATCC+TGG | + | chr1.4:6486354-6486373 | MS.gene016181:intron | 30.0% |
| !! | ATAGGAGTTTACTGTTTTTC+TGG | + | chr1.4:6486560-6486579 | MS.gene016181:intron | 30.0% |
| !! | CTTATTTTCACAAATTCTCC+AGG | - | chr1.4:6486375-6486394 | None:intergenic | 30.0% |
| !! | TGTTTTATGGTTTGTGTTTC+AGG | + | chr1.4:6484556-6484575 | MS.gene016181:intron | 30.0% |
| !!! | CTATTGATTTTCGTTCTACA+CGG | + | chr1.4:6485128-6485147 | MS.gene016181:intron | 30.0% |
| !!! | GGTTTATTTTGACAGATATC+TGG | + | chr1.4:6485499-6485518 | MS.gene016181:intron | 30.0% |
| AAGCAATTAGGCAATTATCC+AGG | + | chr1.4:6486777-6486796 | MS.gene016181:CDS | 35.0% | |
| AAGGAAGCAGAAAGTTCAAA+AGG | + | chr1.4:6484075-6484094 | MS.gene016181:CDS | 35.0% | |
| AGAACTTATGTTGAAGATGG+AGG | + | chr1.4:6486097-6486116 | MS.gene016181:CDS | 35.0% | |
| AGAGTTATTCAGGTAATACC+AGG | - | chr1.4:6485613-6485632 | None:intergenic | 35.0% | |
| AGGAAGCAGAAAGTTCAAAA+GGG | + | chr1.4:6484076-6484095 | MS.gene016181:CDS | 35.0% | |
| AGTAACCATCAACATTCAGT+AGG | - | chr1.4:6485983-6486002 | None:intergenic | 35.0% | |
| ATTCTATCCTCATAATCAGG+AGG | + | chr1.4:6485799-6485818 | MS.gene016181:intron | 35.0% | |
| CAAAGTTCCTTATATATCGC+AGG | - | chr1.4:6486524-6486543 | None:intergenic | 35.0% | |
| GAGTCTAAATTGATGAATGG+TGG | + | chr1.4:6486210-6486229 | MS.gene016181:intron | 35.0% | |
| GAGTTATTCAGGTAATACCA+GGG | - | chr1.4:6485612-6485631 | None:intergenic | 35.0% | |
| GATTATGAGGATAGAATGGA+GGG | - | chr1.4:6485796-6485815 | None:intergenic | 35.0% | |
| GCAGAGTCTAAATTGATGAA+TGG | + | chr1.4:6486207-6486226 | MS.gene016181:intron | 35.0% | |
| GGTTAAGAGGAACATAGATT+TGG | + | chr1.4:6484577-6484596 | MS.gene016181:intron | 35.0% | |
| GTATGTTAGGGTAATGTCAA+TGG | + | chr1.4:6485316-6485335 | MS.gene016181:intron | 35.0% | |
| TACAAAGGGTCTGTTTGAAT+AGG | - | chr1.4:6484965-6484984 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCACAAC+AGG | + | chr1.4:6486451-6486470 | MS.gene016181:intron | 35.0% | |
| TCCATTCTATCCTCATAATC+AGG | + | chr1.4:6485796-6485815 | MS.gene016181:intron | 35.0% | |
| TCCTGATTATGAGGATAGAA+TGG | - | chr1.4:6485800-6485819 | None:intergenic | 35.0% | |
| TGATAGTAGTTAGTTCGTCA+TGG | + | chr1.4:6485420-6485439 | MS.gene016181:intron | 35.0% | |
| TGATTATGAGGATAGAATGG+AGG | - | chr1.4:6485797-6485816 | None:intergenic | 35.0% | |
| TTCATCTGCTAATTGAATGG+CGG | - | chr1.4:6484153-6484172 | None:intergenic | 35.0% | |
| TTGCTTGCATTGTTTGACAA+TGG | + | chr1.4:6486011-6486030 | MS.gene016181:CDS | 35.0% | |
| TTTACCTCCTGCGATATATA+AGG | + | chr1.4:6486514-6486533 | MS.gene016181:intron | 35.0% | |
| ! | AATGGAGGGTATGAGAAAAA+AGG | - | chr1.4:6485782-6485801 | None:intergenic | 35.0% |
| ! | ATAGATTTGGTTTATGGTGG+TGG | + | chr1.4:6484590-6484609 | MS.gene016181:CDS | 35.0% |
| ! | GAGCAAATTTTCTCCCAAAT+AGG | - | chr1.4:6485391-6485410 | None:intergenic | 35.0% |
| ! | TTTGACAATGGTGTTGAAGA+AGG | + | chr1.4:6486023-6486042 | MS.gene016181:CDS | 35.0% |
| AAATATCATCCTGCACAGGT+TGG | + | chr1.4:6485957-6485976 | MS.gene016181:intron | 40.0% | |
| AATGGTGGTTGTCATGTTCT+AGG | + | chr1.4:6484653-6484672 | MS.gene016181:CDS | 40.0% | |
| AGCGAGGGTTTATGTATGTT+AGG | + | chr1.4:6485303-6485322 | MS.gene016181:intron | 40.0% | |
| AGTAGCACAAATACCTCATG+CGG | - | chr1.4:6485068-6485087 | None:intergenic | 40.0% | |
| AGTTCCTTATATATCGCAGG+AGG | - | chr1.4:6486521-6486540 | None:intergenic | 40.0% | |
| ATCAGGAGGATATGGAACTA+TGG | + | chr1.4:6485813-6485832 | MS.gene016181:intron | 40.0% | |
| ATGATAACTTGGGCTCAACT+TGG | + | chr1.4:6485850-6485869 | MS.gene016181:CDS | 40.0% | |
| ATGGTGGTTGTCATGTTCTA+GGG | + | chr1.4:6484654-6484673 | MS.gene016181:CDS | 40.0% | |
| GCGAGGGTTTATGTATGTTA+GGG | + | chr1.4:6485304-6485323 | MS.gene016181:intron | 40.0% | |
| TCCATATCCTCCTGATTATG+AGG | - | chr1.4:6485809-6485828 | None:intergenic | 40.0% | |
| TCCTCATAATCAGGAGGATA+TGG | + | chr1.4:6485805-6485824 | MS.gene016181:intron | 40.0% | |
| TGAGAGTCTATAACCCTGTT+TGG | + | chr1.4:6486265-6486284 | MS.gene016181:intron | 40.0% | |
| TTAGGGTAATGTCAATGGAG+CGG | + | chr1.4:6485321-6485340 | MS.gene016181:intron | 40.0% | |
| ! | AAAAGGGTATGTGTCTTCTG+CGG | + | chr1.4:6484092-6484111 | MS.gene016181:CDS | 40.0% |
| ! | ACCTGTGCAGGATGATATTT+TGG | - | chr1.4:6485957-6485976 | None:intergenic | 40.0% |
| ! | AGCTTCTGGAGATGATAACT+TGG | + | chr1.4:6485839-6485858 | MS.gene016181:CDS | 40.0% |
| ! | CATTCTGCATTTTCTTGTCC+TGG | - | chr1.4:6486798-6486817 | None:intergenic | 40.0% |
| ! | CCTGTGCAGGATGATATTTT+GGG | - | chr1.4:6485956-6485975 | None:intergenic | 40.0% |
| ! | GCTTCTGGAGATGATAACTT+GGG | + | chr1.4:6485840-6485859 | MS.gene016181:CDS | 40.0% |
| !! | GGTTTGTGTTTCAGGTTAAG+AGG | + | chr1.4:6484564-6484583 | MS.gene016181:intron | 40.0% |
| ACAACTATACTCCGAGCACT+GGG | - | chr1.4:6486059-6486078 | None:intergenic | 45.0% | |
| AGCTGGCAGATGAAGCAATT+AGG | + | chr1.4:6486765-6486784 | MS.gene016181:CDS | 45.0% | |
| CAGATATCTGGTGAAGCAGT+AGG | + | chr1.4:6485511-6485530 | MS.gene016181:intron | 45.0% | |
| CCCAAAATATCATCCTGCAC+AGG | + | chr1.4:6485953-6485972 | MS.gene016181:intron | 45.0% | |
| GATATAGGGCCTGTTGTGAT+TGG | - | chr1.4:6486463-6486482 | None:intergenic | 45.0% | |
| GATATCACTTTGGCCCTGTT+CGG | + | chr1.4:6484719-6484738 | MS.gene016181:intron | 45.0% | |
| GATTCATTAAGCCCAGTGCT+CGG | + | chr1.4:6486045-6486064 | MS.gene016181:CDS | 45.0% | |
| GCATGAGAGAAAAGCTGCAA+TGG | + | chr1.4:6485558-6485577 | MS.gene016181:CDS | 45.0% | |
| GTGAAGCAGTAGGTGAAGTA+AGG | + | chr1.4:6485521-6485540 | MS.gene016181:CDS | 45.0% | |
| TAGGGTAATGTCAATGGAGC+GGG | + | chr1.4:6485322-6485341 | MS.gene016181:intron | 45.0% | |
| TGGAACTATGGAAGAGCTTC+TGG | + | chr1.4:6485825-6485844 | MS.gene016181:CDS | 45.0% | |
| ! | GTTGGCCTACTGAATGTTGA+TGG | + | chr1.4:6485975-6485994 | MS.gene016181:CDS | 45.0% |
| !! | GGTGGAAGTGTTGGATTGAT+GGG | + | chr1.4:6484608-6484627 | MS.gene016181:CDS | 45.0% |
| !! | GTTTATGGTGGTGGAAGTGT+TGG | + | chr1.4:6484599-6484618 | MS.gene016181:CDS | 45.0% |
| !! | TGGTGGAAGTGTTGGATTGA+TGG | + | chr1.4:6484607-6484626 | MS.gene016181:CDS | 45.0% |
| AAAAGCTCTCATGCCGCATG+AGG | + | chr1.4:6485052-6485071 | MS.gene016181:CDS | 50.0% | |
| ACTGAAAACATGGCGGTTGC+CGG | - | chr1.4:6484126-6484145 | None:intergenic | 50.0% | |
| AGGGTAATGTCAATGGAGCG+GGG | + | chr1.4:6485323-6485342 | MS.gene016181:intron | 50.0% | |
| ATGAGGGGCTACATGCTCAT+GGG | - | chr1.4:6486742-6486761 | None:intergenic | 50.0% | |
| GACAACTATACTCCGAGCAC+TGG | - | chr1.4:6486060-6486079 | None:intergenic | 50.0% | |
| TCATCTGCCAGCTCTCATGA+GGG | - | chr1.4:6486758-6486777 | None:intergenic | 50.0% | |
| TGCAATGGCTCAAGAAGCTG+AGG | + | chr1.4:6485573-6485592 | MS.gene016181:CDS | 50.0% | |
| TTCATCTGCCAGCTCTCATG+AGG | - | chr1.4:6486759-6486778 | None:intergenic | 50.0% | |
| ! | GAGGCATTTATTGCACTCCC+TGG | + | chr1.4:6485592-6485611 | MS.gene016181:CDS | 50.0% |
| ! | TCATGCGGCATGAGAGCTTT+TGG | - | chr1.4:6485053-6485072 | None:intergenic | 50.0% |
| ATGTAGCCCCTCATGAGAGC+TGG | + | chr1.4:6486748-6486767 | MS.gene016181:CDS | 55.0% | |
| CATCTGCCAGCTCTCATGAG+GGG | - | chr1.4:6486757-6486776 | None:intergenic | 55.0% | |
| CATGAGGGGCTACATGCTCA+TGG | - | chr1.4:6486743-6486762 | None:intergenic | 55.0% | |
| CGGCGTCACTGAAAACATGG+CGG | - | chr1.4:6484133-6484152 | None:intergenic | 55.0% | |
| TGGCGGCGTCACTGAAAACA+TGG | - | chr1.4:6484136-6484155 | None:intergenic | 55.0% | |
| TTCAGTAGGCCAACCTGTGC+AGG | - | chr1.4:6485969-6485988 | None:intergenic | 55.0% | |
| GGGGCTACATGCTCATGGGA+AGG | - | chr1.4:6486738-6486757 | None:intergenic | 60.0% | |
| GTCTTCTGCGGCAGCAACTC+CGG | + | chr1.4:6484104-6484123 | MS.gene016181:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6484068 | 6486818 | 6484068 | ID=MS.gene016181 |
| chr1.4 | mRNA | 6484068 | 6486818 | 6484068 | ID=MS.gene016181.t1;Parent=MS.gene016181 |
| chr1.4 | exon | 6484068 | 6484175 | 6484068 | ID=MS.gene016181.t1.exon1;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6484068 | 6484175 | 6484068 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| chr1.4 | exon | 6484578 | 6484675 | 6484578 | ID=MS.gene016181.t1.exon2;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6484578 | 6484675 | 6484578 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| chr1.4 | exon | 6485043 | 6485073 | 6485043 | ID=MS.gene016181.t1.exon3;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6485043 | 6485073 | 6485043 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| chr1.4 | exon | 6485514 | 6485613 | 6485514 | ID=MS.gene016181.t1.exon4;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6485514 | 6485613 | 6485514 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| chr1.4 | exon | 6485818 | 6485888 | 6485818 | ID=MS.gene016181.t1.exon5;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6485818 | 6485888 | 6485818 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| chr1.4 | exon | 6485975 | 6486118 | 6485975 | ID=MS.gene016181.t1.exon6;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6485975 | 6486118 | 6485975 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| chr1.4 | exon | 6486726 | 6486818 | 6486726 | ID=MS.gene016181.t1.exon7;Parent=MS.gene016181.t1 |
| chr1.4 | CDS | 6486726 | 6486818 | 6486726 | ID=cds.MS.gene016181.t1;Parent=MS.gene016181.t1 |
| Gene Sequence |
| Protein sequence |
