Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016292.t1 | XP_003628253.2 | 91.5 | 281 | 24 | 0 | 1 | 281 | 1 | 281 | 3.50E-132 | 481.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016292.t1 | O04331 | 76.1 | 276 | 66 | 0 | 1 | 276 | 1 | 276 | 1.9e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016292.t1 | G7L8K5 | 91.5 | 281 | 24 | 0 | 1 | 281 | 1 | 281 | 2.5e-132 | 481.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56214 | MS.gene016292 | PPI |
| MS.gene80094 | MS.gene016292 | PPI |
| MS.gene91416 | MS.gene016292 | PPI |
| MS.gene88440 | MS.gene016292 | PPI |
| MS.gene014181 | MS.gene016292 | PPI |
| MS.gene055768 | MS.gene016292 | PPI |
| MS.gene009411 | MS.gene016292 | PPI |
| MS.gene61084 | MS.gene016292 | PPI |
| MS.gene066925 | MS.gene016292 | PPI |
| MS.gene016292 | MS.gene063809 | PPI |
| MS.gene31416 | MS.gene016292 | PPI |
| MS.gene043467 | MS.gene016292 | PPI |
| MS.gene016292 | MS.gene56214 | PPI |
| MS.gene058374 | MS.gene016292 | PPI |
| MS.gene016544 | MS.gene016292 | PPI |
| MS.gene68113 | MS.gene016292 | PPI |
| MS.gene016292 | MS.gene024895 | PPI |
| MS.gene067266 | MS.gene016292 | PPI |
| MS.gene99648 | MS.gene016292 | PPI |
| MS.gene59884 | MS.gene016292 | PPI |
| MS.gene016292 | MS.gene066925 | PPI |
| MS.gene063067 | MS.gene016292 | PPI |
| MS.gene92318 | MS.gene016292 | PPI |
| MS.gene78840 | MS.gene016292 | PPI |
| MS.gene09764 | MS.gene016292 | PPI |
| MS.gene000128 | MS.gene016292 | PPI |
| MS.gene016292 | MS.gene015412 | PPI |
| MS.gene016292 | MS.gene028857 | PPI |
| MS.gene59883 | MS.gene016292 | PPI |
| MS.gene68716 | MS.gene016292 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016292.t1 | MTR_8g046300 | 97.865 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 0.0 | 563 |
| MS.gene016292.t1 | MTR_3g008250 | 89.130 | 276 | 29 | 1 | 1 | 276 | 1 | 275 | 0.0 | 506 |
| MS.gene016292.t1 | MTR_2g090760 | 54.400 | 250 | 111 | 2 | 20 | 269 | 26 | 272 | 3.76e-92 | 274 |
| MS.gene016292.t1 | MTR_4g078200 | 53.279 | 244 | 113 | 1 | 22 | 265 | 31 | 273 | 1.22e-88 | 266 |
| MS.gene016292.t1 | MTR_4g078200 | 53.125 | 224 | 103 | 2 | 57 | 280 | 5 | 226 | 1.19e-78 | 238 |
| MS.gene016292.t1 | MTR_5g093030 | 53.631 | 179 | 82 | 1 | 1 | 179 | 1 | 178 | 5.25e-60 | 189 |
| MS.gene016292.t1 | MTR_5g093040 | 57.627 | 118 | 40 | 1 | 1 | 118 | 1 | 108 | 8.53e-41 | 137 |
| MS.gene016292.t1 | MTR_6g004320 | 55.970 | 134 | 21 | 1 | 92 | 225 | 1 | 96 | 1.94e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016292.t1 | AT5G40770 | 82.609 | 276 | 48 | 0 | 1 | 276 | 1 | 276 | 1.71e-172 | 478 |
| MS.gene016292.t1 | AT3G27280 | 79.710 | 276 | 56 | 0 | 1 | 276 | 1 | 276 | 4.66e-167 | 464 |
| MS.gene016292.t1 | AT3G27280 | 79.710 | 276 | 56 | 0 | 1 | 276 | 1 | 276 | 4.66e-167 | 464 |
| MS.gene016292.t1 | AT5G14300 | 65.079 | 252 | 62 | 1 | 28 | 279 | 20 | 245 | 6.33e-117 | 336 |
| MS.gene016292.t1 | AT4G28510 | 55.128 | 234 | 104 | 1 | 31 | 264 | 35 | 267 | 3.74e-90 | 269 |
| MS.gene016292.t1 | AT1G03860 | 53.909 | 243 | 111 | 1 | 22 | 264 | 26 | 267 | 3.95e-90 | 269 |
| MS.gene016292.t1 | AT1G03860 | 53.909 | 243 | 111 | 1 | 22 | 264 | 26 | 267 | 3.95e-90 | 269 |
| MS.gene016292.t1 | AT5G44140 | 51.793 | 251 | 120 | 1 | 22 | 272 | 26 | 275 | 3.29e-87 | 261 |
| MS.gene016292.t1 | AT2G20530 | 51.852 | 243 | 116 | 1 | 22 | 264 | 24 | 265 | 7.58e-87 | 261 |
| MS.gene016292.t1 | AT2G20530 | 51.852 | 243 | 116 | 1 | 22 | 264 | 24 | 265 | 7.58e-87 | 261 |
| MS.gene016292.t1 | AT1G03860 | 54.187 | 203 | 92 | 1 | 62 | 264 | 1 | 202 | 2.19e-73 | 224 |
Find 77 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCTACTGCTGCTTT+TGG | 0.196530 | 8.2:-55914753 | MS.gene016292:CDS |
| GCCCGTGCCGCTTTCGGCCT+TGG | 0.198321 | 8.2:-55916095 | MS.gene016292:CDS |
| GAACCCATGGGATGAGAAAA+TGG | 0.212561 | 8.2:+55915961 | None:intergenic |
| GTTAACCATCTGAAGATCTT+TGG | 0.292822 | 8.2:+55915878 | None:intergenic |
| CCTAATGTTACTTATCTTCC+TGG | 0.321773 | 8.2:-55914663 | MS.gene016292:CDS |
| GCTATCACGCATTTGTCTTA+TGG | 0.335777 | 8.2:-55914921 | MS.gene016292:CDS |
| CACAGGTGTCTGCACTTGTC+CGG | 0.350252 | 8.2:-55914995 | MS.gene016292:CDS |
| GCAGAAGCAGGTGGCTCAAC+AGG | 0.352028 | 8.2:-55914874 | MS.gene016292:CDS |
| AGCGTCGGGCTGCGATCATT+CGG | 0.352791 | 8.2:-55914809 | MS.gene016292:CDS |
| GAGAGAGAACACGGAGAGTT+AGG | 0.357491 | 8.2:+55915856 | None:intergenic |
| GTAGGTAAATTCTCAGTATC+AGG | 0.371891 | 8.2:+55915831 | None:intergenic |
| AACGTCGCCCGTGCCGCTTT+CGG | 0.381810 | 8.2:-55916101 | MS.gene016292:CDS |
| CACACTTTCTCTTCAATCTC+TGG | 0.385958 | 8.2:-55915903 | MS.gene016292:CDS |
| CGGCACGGGCGACGTTGGTT+AGG | 0.388391 | 8.2:+55916108 | None:intergenic |
| GCCAAGGCCGAAAGCGGCAC+GGG | 0.400953 | 8.2:+55916094 | None:intergenic |
| CGCCAAGGCCGAAAGCGGCA+CGG | 0.419444 | 8.2:+55916093 | None:intergenic |
| ATTATAACATTACCGATTGA+AGG | 0.429304 | 8.2:+55915765 | None:intergenic |
| GAAGTCGGAGCAGGAGCGTC+GGG | 0.439105 | 8.2:-55914823 | MS.gene016292:CDS |
| ATGTCTCTTAATACTCCAAC+TGG | 0.441716 | 8.2:-55914624 | MS.gene016292:CDS |
| CCAGGAAGATAAGTAACATT+AGG | 0.443017 | 8.2:+55914663 | None:intergenic |
| CCTACCATTGTTCAGAATCT+CGG | 0.444941 | 8.2:-55915813 | MS.gene016292:CDS |
| GCGTCGGGCTGCGATCATTC+GGG | 0.467308 | 8.2:-55914808 | MS.gene016292:CDS |
| CACGTCGGACAAGGCTCTCC+CGG | 0.471995 | 8.2:+55914976 | None:intergenic |
| CTTCACCGATGGATTGGTCG+AGG | 0.478021 | 8.2:+55915988 | None:intergenic |
| CAGCGGTTGCAGCGGCGCCA+AGG | 0.480297 | 8.2:+55916078 | None:intergenic |
| GGACGGGGTTGATTGAACTT+AGG | 0.481276 | 8.2:-55914731 | MS.gene016292:CDS |
| GGCGCGTTGGCCACCGTCGA+CGG | 0.487014 | 8.2:+55916037 | None:intergenic |
| AACCCATGGGATGAGAAAAT+GGG | 0.496141 | 8.2:+55915962 | None:intergenic |
| TGTTGTGATGAAGTCGGAGC+AGG | 0.504236 | 8.2:-55914832 | MS.gene016292:CDS |
| GAGCCTTGTCCGACGTGCTA+AGG | 0.504975 | 8.2:-55914970 | MS.gene016292:CDS |
| ACACCTGTGGACGCTCTGTA+AGG | 0.510363 | 8.2:+55915009 | None:intergenic |
| ACAGGTGTCTGCACTTGTCC+GGG | 0.511177 | 8.2:-55914994 | MS.gene016292:CDS |
| GGGTTCCTTCACCGATGGAT+TGG | 0.513176 | 8.2:+55915982 | None:intergenic |
| GCGTGCTGTGGAGCAGAAGC+AGG | 0.514540 | 8.2:-55914886 | MS.gene016292:CDS |
| TAGGATGATTGAAGCTGCTA+GGG | 0.515427 | 8.2:-55914712 | MS.gene016292:CDS |
| GGCCACCGTCGACGGTGTAG+AGG | 0.515496 | 8.2:+55916045 | None:intergenic |
| TAACATCGTTCTTGATGATG+TGG | 0.522591 | 8.2:-55914943 | MS.gene016292:CDS |
| GGTCGAGGATTCCGCGAAAA+CGG | 0.524148 | 8.2:+55916003 | None:intergenic |
| AGCGGCGCCAAGGCCGAAAG+CGG | 0.527672 | 8.2:+55916088 | None:intergenic |
| GCTGCGATCATTCGGGCTGA+AGG | 0.531314 | 8.2:-55914801 | MS.gene016292:CDS |
| CTCGACCAATCCATCGGTGA+AGG | 0.554173 | 8.2:-55915987 | MS.gene016292:CDS |
| TTAGGATGATTGAAGCTGCT+AGG | 0.554479 | 8.2:-55914713 | MS.gene016292:CDS |
| GGTCGAAGAGGACGGCGCGT+TGG | 0.554524 | 8.2:+55916024 | None:intergenic |
| ACGGGCGACGTTGGTTAGGA+AGG | 0.561469 | 8.2:+55916112 | None:intergenic |
| AATCCTTAGCACGTCGGACA+AGG | 0.567094 | 8.2:+55914967 | None:intergenic |
| TGAAGTCGGAGCAGGAGCGT+CGG | 0.572437 | 8.2:-55914824 | MS.gene016292:CDS |
| AAAATGGGTTCCTTCACCGA+TGG | 0.573182 | 8.2:+55915977 | None:intergenic |
| CAGAGATTGAAGAGAAAGTG+TGG | 0.578351 | 8.2:+55915904 | None:intergenic |
| GCTCCTTACAGAGCGTCCAC+AGG | 0.578894 | 8.2:-55915012 | MS.gene016292:CDS |
| AAAATTTGTTGTGATGAAGT+CGG | 0.579042 | 8.2:-55914838 | MS.gene016292:CDS |
| CCGAGATTCTGAACAATGGT+AGG | 0.580029 | 8.2:+55915813 | None:intergenic |
| GCGAAAACGGTCGAAGAGGA+CGG | 0.585122 | 8.2:+55916016 | None:intergenic |
| AACAACAATCAACGACCAGT+TGG | 0.587712 | 8.2:+55914609 | None:intergenic |
| TGCTGTGGAGCAGAAGCAGG+TGG | 0.588155 | 8.2:-55914883 | MS.gene016292:CDS |
| AGAGATTGAAGAGAAAGTGT+GGG | 0.588555 | 8.2:+55915905 | None:intergenic |
| TATCAGGACGAGAGAGAACA+CGG | 0.592774 | 8.2:+55915847 | None:intergenic |
| TTAGGAAGGAGACTGCGGCT+TGG | 0.596955 | 8.2:+55916126 | None:intergenic |
| GAAAGCGGCACGGGCGACGT+TGG | 0.597200 | 8.2:+55916103 | None:intergenic |
| GGTGTTGACAGCGGTTGCAG+CGG | 0.597924 | 8.2:+55916070 | None:intergenic |
| GCCACCGTCGACGGTGTAGA+GGG | 0.600376 | 8.2:+55916046 | None:intergenic |
| ATGATCATGTTATTTCCACC+AGG | 0.609015 | 8.2:+55914645 | None:intergenic |
| ACCTCCCTCTACACCGTCGA+CGG | 0.610203 | 8.2:-55916050 | MS.gene016292:CDS |
| AATGTTACTTATCTTCCTGG+TGG | 0.614739 | 8.2:-55914660 | MS.gene016292:CDS |
| TCCCTCTACACCGTCGACGG+TGG | 0.623772 | 8.2:-55916047 | MS.gene016292:CDS |
| GGAATCCTCGACCAATCCAT+CGG | 0.624287 | 8.2:-55915993 | MS.gene016292:CDS |
| TTCCGCGAAAACGGTCGAAG+AGG | 0.635954 | 8.2:+55916012 | None:intergenic |
| TGGTACCAAAGATCTTCAGA+TGG | 0.636368 | 8.2:-55915883 | MS.gene016292:CDS |
| CGGACAAGTGCAGACACCTG+TGG | 0.640946 | 8.2:+55914996 | None:intergenic |
| ACCGTCGACGGTGTAGAGGG+AGG | 0.656882 | 8.2:+55916049 | None:intergenic |
| GTTGGTTAGGAAGGAGACTG+CGG | 0.671219 | 8.2:+55916121 | None:intergenic |
| AAGCTGCTAGGGAAATTGCA+AGG | 0.676083 | 8.2:-55914701 | MS.gene016292:CDS |
| GAGATTGAAGAGAAAGTGTG+GGG | 0.685729 | 8.2:+55915906 | None:intergenic |
| GTAGAGGGAGGTGTTGACAG+CGG | 0.702700 | 8.2:+55916061 | None:intergenic |
| TGGCTCAACAGGAAGCAGAG+AGG | 0.714990 | 8.2:-55914863 | MS.gene016292:CDS |
| TGTTAAAATCCTTAGCACGT+CGG | 0.733880 | 8.2:+55914961 | None:intergenic |
| GAGACCGAGATTCTGAACAA+TGG | 0.736610 | 8.2:+55915809 | None:intergenic |
| TGTTGTGGCACAATTCAATG+CGG | 0.772941 | 8.2:-55915039 | MS.gene016292:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTGATAGAAGTATTTA+GGG | - | chr8.2:55915043-55915062 | MS.gene016292:CDS | 15.0% |
| !! | ACATATTCATTACATTATCA+AGG | + | chr8.2:55915652-55915671 | None:intergenic | 20.0% |
| !! | CATGAAAATTAATCTATTTG+GGG | - | chr8.2:55915466-55915485 | MS.gene016292:intron | 20.0% |
| !! | GCATGAAAATTAATCTATTT+GGG | - | chr8.2:55915465-55915484 | MS.gene016292:intron | 20.0% |
| !! | TGCATGAAAATTAATCTATT+TGG | - | chr8.2:55915464-55915483 | MS.gene016292:intron | 20.0% |
| !!! | GTATATTGATAGAAGTATTT+AGG | - | chr8.2:55915042-55915061 | MS.gene016292:CDS | 20.0% |
| ! | AAGCCAATCTATATATTTCT+TGG | - | chr8.2:55915334-55915353 | MS.gene016292:intron | 25.0% |
| ! | ACACCAAGAAATATATAGAT+TGG | + | chr8.2:55915340-55915359 | None:intergenic | 25.0% |
| ! | TGCATGAGAATTAATCTATT+TGG | - | chr8.2:55915404-55915423 | MS.gene016292:intron | 25.0% |
| !! | ATTATAACATTACCGATTGA+AGG | + | chr8.2:55914992-55915011 | None:intergenic | 25.0% |
| !! | CTAACTTTTACATCTTTGAT+AGG | - | chr8.2:55915674-55915693 | MS.gene016292:intron | 25.0% |
| !! | GATTAATTTTCATGCAGTAA+CGG | + | chr8.2:55915460-55915479 | None:intergenic | 25.0% |
| !!! | AAAAAGTAGTTTTACACTGT+TGG | - | chr8.2:55915381-55915400 | MS.gene016292:intron | 25.0% |
| !!! | AAAATTTGTTGTGATGAAGT+CGG | - | chr8.2:55915916-55915935 | MS.gene016292:CDS | 25.0% |
| !!! | ATCTATTGTTGTGTTTTGAT+TGG | - | chr8.2:55915537-55915556 | MS.gene016292:intron | 25.0% |
| !!! | ATTGCTTTTGTATATGCTAT+AGG | - | chr8.2:55915180-55915199 | MS.gene016292:intron | 25.0% |
| GAAAAAGTTCTTCCTTCAAT+CGG | - | chr8.2:55914977-55914996 | MS.gene016292:CDS | 30.0% | |
| TTGATAGAATGAGTACATTG+AGG | - | chr8.2:55915597-55915616 | MS.gene016292:intron | 30.0% | |
| ! | CAGCTTATAACAATTTTCAC+AGG | + | chr8.2:55915256-55915275 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr8.2:55915294-55915313 | None:intergenic | 30.0% |
| !! | GTTTTGATATCGAAGATGTA+AGG | + | chr8.2:55914824-55914843 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr8.2:55915293-55915312 | None:intergenic | 30.0% |
| !! | TCTATTTGGTGTGATTTGAT+TGG | - | chr8.2:55915418-55915437 | MS.gene016292:intron | 30.0% |
| AATAAGTTGTTTGCCCAAAC+AGG | + | chr8.2:55915069-55915088 | None:intergenic | 35.0% | |
| ATGTCTCTTAATACTCCAAC+TGG | - | chr8.2:55916130-55916149 | MS.gene016292:CDS | 35.0% | |
| CCAGGAAGATAAGTAACATT+AGG | + | chr8.2:55916094-55916113 | None:intergenic | 35.0% | |
| GTAGGTAAATTCTCAGTATC+AGG | + | chr8.2:55914926-55914945 | None:intergenic | 35.0% | |
| GTTAACCATCTGAAGATCTT+TGG | + | chr8.2:55914879-55914898 | None:intergenic | 35.0% | |
| TGTTAAAATCCTTAGCACGT+CGG | + | chr8.2:55915796-55915815 | None:intergenic | 35.0% | |
| ! | AATGTTACTTATCTTCCTGG+TGG | - | chr8.2:55916094-55916113 | MS.gene016292:CDS | 35.0% |
| ! | AGAGATTGAAGAGAAAGTGT+GGG | + | chr8.2:55914852-55914871 | None:intergenic | 35.0% |
| ! | CCTAATGTTACTTATCTTCC+TGG | - | chr8.2:55916091-55916110 | MS.gene016292:CDS | 35.0% |
| ! | TTAATCTATTTGGGGTGACT+TGG | - | chr8.2:55915474-55915493 | MS.gene016292:intron | 35.0% |
| !! | ATGATCATGTTATTTCCACC+AGG | + | chr8.2:55916112-55916131 | None:intergenic | 35.0% |
| !! | TAACATCGTTCTTGATGATG+TGG | - | chr8.2:55915811-55915830 | MS.gene016292:CDS | 35.0% |
| AACCCATGGGATGAGAAAAT+GGG | + | chr8.2:55914795-55914814 | None:intergenic | 40.0% | |
| CACACTTTCTCTTCAATCTC+TGG | - | chr8.2:55914851-55914870 | MS.gene016292:CDS | 40.0% | |
| CAGAGATTGAAGAGAAAGTG+TGG | + | chr8.2:55914853-55914872 | None:intergenic | 40.0% | |
| CCTACCATTGTTCAGAATCT+CGG | - | chr8.2:55914941-55914960 | MS.gene016292:CDS | 40.0% | |
| GCTATCACGCATTTGTCTTA+TGG | - | chr8.2:55915833-55915852 | MS.gene016292:CDS | 40.0% | |
| TAGGATGATTGAAGCTGCTA+GGG | - | chr8.2:55916042-55916061 | MS.gene016292:CDS | 40.0% | |
| TGGTACCAAAGATCTTCAGA+TGG | - | chr8.2:55914871-55914890 | MS.gene016292:CDS | 40.0% | |
| TGTTGTGGCACAATTCAATG+CGG | - | chr8.2:55915715-55915734 | MS.gene016292:intron | 40.0% | |
| TTAGGATGATTGAAGCTGCT+AGG | - | chr8.2:55916041-55916060 | MS.gene016292:CDS | 40.0% | |
| ! | AACCCATTTTCTCATCCCAT+GGG | - | chr8.2:55914790-55914809 | MS.gene016292:CDS | 40.0% |
| ! | ATGTAAGGCTTTTGAACCCA+TGG | + | chr8.2:55914809-55914828 | None:intergenic | 40.0% |
| ! | GAAGTATTTAGGGCCTGTTT+GGG | - | chr8.2:55915053-55915072 | MS.gene016292:CDS | 40.0% |
| ! | GAGATTGAAGAGAAAGTGTG+GGG | + | chr8.2:55914851-55914870 | None:intergenic | 40.0% |
| ! | TGTAAGGCTTTTGAACCCAT+GGG | + | chr8.2:55914808-55914827 | None:intergenic | 40.0% |
| !! | AGAAGTATTTAGGGCCTGTT+TGG | - | chr8.2:55915052-55915071 | MS.gene016292:CDS | 40.0% |
| !!! | CGAAGTTTTGAAAGCTGTTG+TGG | - | chr8.2:55915700-55915719 | MS.gene016292:intron | 40.0% |
| AAGCTGCTAGGGAAATTGCA+AGG | - | chr8.2:55916053-55916072 | MS.gene016292:CDS | 45.0% | |
| CCGAGATTCTGAACAATGGT+AGG | + | chr8.2:55914944-55914963 | None:intergenic | 45.0% | |
| GAACCCATGGGATGAGAAAA+TGG | + | chr8.2:55914796-55914815 | None:intergenic | 45.0% | |
| GAGACCGAGATTCTGAACAA+TGG | + | chr8.2:55914948-55914967 | None:intergenic | 45.0% | |
| TATCAGGACGAGAGAGAACA+CGG | + | chr8.2:55914910-55914929 | None:intergenic | 45.0% | |
| ! | AAAATGGGTTCCTTCACCGA+TGG | + | chr8.2:55914780-55914799 | None:intergenic | 45.0% |
| ! | GAACCCATTTTCTCATCCCA+TGG | - | chr8.2:55914789-55914808 | MS.gene016292:CDS | 45.0% |
| !! | TCTATTTGGGGTGACTTGGT+TGG | - | chr8.2:55915478-55915497 | MS.gene016292:intron | 45.0% |
| !!! | CTGATGCTACTGCTGCTTTT+GGG | - | chr8.2:55916002-55916021 | MS.gene016292:CDS | 45.0% |
| !!! | TCTGATGCTACTGCTGCTTT+TGG | - | chr8.2:55916001-55916020 | MS.gene016292:CDS | 45.0% |
| AATCCTTAGCACGTCGGACA+AGG | + | chr8.2:55915790-55915809 | None:intergenic | 50.0% | |
| GAGAGAGAACACGGAGAGTT+AGG | + | chr8.2:55914901-55914920 | None:intergenic | 50.0% | |
| GGAATCCTCGACCAATCCAT+CGG | - | chr8.2:55914761-55914780 | MS.gene016292:CDS | 50.0% | |
| GTTGGTTAGGAAGGAGACTG+CGG | + | chr8.2:55914636-55914655 | None:intergenic | 50.0% | |
| TGTTGTGATGAAGTCGGAGC+AGG | - | chr8.2:55915922-55915941 | MS.gene016292:CDS | 50.0% | |
| ! | GGACGGGGTTGATTGAACTT+AGG | - | chr8.2:55916023-55916042 | MS.gene016292:CDS | 50.0% |
| ! | TGCTGAATTTTCGCGTGCTG+TGG | - | chr8.2:55915856-55915875 | MS.gene016292:CDS | 50.0% |
| !!! | TGCTACTGCTGCTTTTGGGA+CGG | - | chr8.2:55916006-55916025 | MS.gene016292:CDS | 50.0% |
| ACACCTGTGGACGCTCTGTA+AGG | + | chr8.2:55915748-55915767 | None:intergenic | 55.0% | |
| ACAGGTGTCTGCACTTGTCC+GGG | - | chr8.2:55915760-55915779 | MS.gene016292:intron | 55.0% | |
| CACAGGTGTCTGCACTTGTC+CGG | - | chr8.2:55915759-55915778 | MS.gene016292:intron | 55.0% | |
| CTCGACCAATCCATCGGTGA+AGG | - | chr8.2:55914767-55914786 | MS.gene016292:CDS | 55.0% | |
| GCGAAAACGGTCGAAGAGGA+CGG | + | chr8.2:55914741-55914760 | None:intergenic | 55.0% | |
| GGGTTCCTTCACCGATGGAT+TGG | + | chr8.2:55914775-55914794 | None:intergenic | 55.0% | |
| GGTCGAGGATTCCGCGAAAA+CGG | + | chr8.2:55914754-55914773 | None:intergenic | 55.0% | |
| TGGCTCAACAGGAAGCAGAG+AGG | - | chr8.2:55915891-55915910 | MS.gene016292:CDS | 55.0% | |
| TTAGGAAGGAGACTGCGGCT+TGG | + | chr8.2:55914631-55914650 | None:intergenic | 55.0% | |
| TTCCGCGAAAACGGTCGAAG+AGG | + | chr8.2:55914745-55914764 | None:intergenic | 55.0% | |
| ! | GTCCTCTTCGACCGTTTTCG+CGG | - | chr8.2:55914740-55914759 | MS.gene016292:CDS | 55.0% |
| !! | CTTCACCGATGGATTGGTCG+AGG | + | chr8.2:55914769-55914788 | None:intergenic | 55.0% |
| !! | GTAGAGGGAGGTGTTGACAG+CGG | + | chr8.2:55914696-55914715 | None:intergenic | 55.0% |
| !!! | CTACTGCTGCTTTTGGGACG+GGG | - | chr8.2:55916008-55916027 | MS.gene016292:CDS | 55.0% |
| !!! | GCTACTGCTGCTTTTGGGAC+GGG | - | chr8.2:55916007-55916026 | MS.gene016292:CDS | 55.0% |
| ACCTCCCTCTACACCGTCGA+CGG | - | chr8.2:55914704-55914723 | MS.gene016292:CDS | 60.0% | |
| CGGACAAGTGCAGACACCTG+TGG | + | chr8.2:55915761-55915780 | None:intergenic | 60.0% | |
| GCAGAAGCAGGTGGCTCAAC+AGG | - | chr8.2:55915880-55915899 | MS.gene016292:CDS | 60.0% | |
| GCTGCGATCATTCGGGCTGA+AGG | - | chr8.2:55915953-55915972 | MS.gene016292:CDS | 60.0% | |
| TGCTGTGGAGCAGAAGCAGG+TGG | - | chr8.2:55915871-55915890 | MS.gene016292:CDS | 60.0% | |
| ! | ACGGGCGACGTTGGTTAGGA+AGG | + | chr8.2:55914645-55914664 | None:intergenic | 60.0% |
| ! | AGCGTCGGGCTGCGATCATT+CGG | - | chr8.2:55915945-55915964 | MS.gene016292:CDS | 60.0% |
| ! | GAGCCTTGTCCGACGTGCTA+AGG | - | chr8.2:55915784-55915803 | MS.gene016292:CDS | 60.0% |
| ! | GCTCCTTACAGAGCGTCCAC+AGG | - | chr8.2:55915742-55915761 | MS.gene016292:intron | 60.0% |
| ! | TGAAGTCGGAGCAGGAGCGT+CGG | - | chr8.2:55915930-55915949 | MS.gene016292:CDS | 60.0% |
| !! | GGTGTTGACAGCGGTTGCAG+CGG | + | chr8.2:55914687-55914706 | None:intergenic | 60.0% |
| ACCGTCGACGGTGTAGAGGG+AGG | + | chr8.2:55914708-55914727 | None:intergenic | 65.0% | |
| CACGTCGGACAAGGCTCTCC+CGG | + | chr8.2:55915781-55915800 | None:intergenic | 65.0% | |
| GCCACCGTCGACGGTGTAGA+GGG | + | chr8.2:55914711-55914730 | None:intergenic | 65.0% | |
| GCGTCGGGCTGCGATCATTC+GGG | - | chr8.2:55915946-55915965 | MS.gene016292:CDS | 65.0% | |
| GCGTGCTGTGGAGCAGAAGC+AGG | - | chr8.2:55915868-55915887 | MS.gene016292:CDS | 65.0% | |
| TCCCTCTACACCGTCGACGG+TGG | - | chr8.2:55914707-55914726 | MS.gene016292:CDS | 65.0% | |
| !! | AACGTCGCCCGTGCCGCTTT+CGG | - | chr8.2:55914653-55914672 | MS.gene016292:CDS | 65.0% |
| !! | GAAGTCGGAGCAGGAGCGTC+GGG | - | chr8.2:55915931-55915950 | MS.gene016292:CDS | 65.0% |
| AGCGGCGCCAAGGCCGAAAG+CGG | + | chr8.2:55914669-55914688 | None:intergenic | 70.0% | |
| CGCCAAGGCCGAAAGCGGCA+CGG | + | chr8.2:55914664-55914683 | None:intergenic | 70.0% | |
| GAAAGCGGCACGGGCGACGT+TGG | + | chr8.2:55914654-55914673 | None:intergenic | 70.0% | |
| GCCAAGGCCGAAAGCGGCAC+GGG | + | chr8.2:55914663-55914682 | None:intergenic | 70.0% | |
| GGCCACCGTCGACGGTGTAG+AGG | + | chr8.2:55914712-55914731 | None:intergenic | 70.0% | |
| GGTCGAAGAGGACGGCGCGT+TGG | + | chr8.2:55914733-55914752 | None:intergenic | 70.0% | |
| ! | CGGCACGGGCGACGTTGGTT+AGG | + | chr8.2:55914649-55914668 | None:intergenic | 70.0% |
| CAGCGGTTGCAGCGGCGCCA+AGG | + | chr8.2:55914679-55914698 | None:intergenic | 75.0% | |
| ! | GGCGCGTTGGCCACCGTCGA+CGG | + | chr8.2:55914720-55914739 | None:intergenic | 75.0% |
| !! | GCCCGTGCCGCTTTCGGCCT+TGG | - | chr8.2:55914659-55914678 | MS.gene016292:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 55914617 | 55916159 | 55914617 | ID=MS.gene016292 |
| chr8.2 | mRNA | 55914617 | 55916159 | 55914617 | ID=MS.gene016292.t1;Parent=MS.gene016292 |
| chr8.2 | exon | 55915778 | 55916159 | 55915778 | ID=MS.gene016292.t1.exon1;Parent=MS.gene016292.t1 |
| chr8.2 | CDS | 55915778 | 55916159 | 55915778 | ID=cds.MS.gene016292.t1;Parent=MS.gene016292.t1 |
| chr8.2 | exon | 55914617 | 55915080 | 55914617 | ID=MS.gene016292.t1.exon2;Parent=MS.gene016292.t1 |
| chr8.2 | CDS | 55914617 | 55915080 | 55914617 | ID=cds.MS.gene016292.t1;Parent=MS.gene016292.t1 |
| Gene Sequence |
| Protein sequence |
