Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59884.t1 | XP_003628253.2 | 91.8 | 280 | 23 | 0 | 1 | 280 | 1 | 280 | 3.60E-132 | 481.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59884.t1 | O04331 | 76.1 | 276 | 66 | 0 | 1 | 276 | 1 | 276 | 1.9e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59884.t1 | G7L8K5 | 91.8 | 280 | 23 | 0 | 1 | 280 | 1 | 280 | 2.6e-132 | 481.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92318 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene80094 | PPI |
| MS.gene59884 | MS.gene063067 | PPI |
| MS.gene59884 | MS.gene015412 | PPI |
| MS.gene78840 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene067266 | PPI |
| MS.gene09764 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene59883 | PPI |
| MS.gene000128 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene028857 | PPI |
| MS.gene99648 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene016544 | PPI |
| MS.gene59884 | MS.gene063809 | PPI |
| MS.gene59884 | MS.gene91416 | PPI |
| MS.gene59884 | MS.gene61084 | PPI |
| MS.gene59884 | MS.gene016292 | PPI |
| MS.gene59884 | MS.gene009411 | PPI |
| MS.gene014181 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene68716 | PPI |
| MS.gene59884 | MS.gene56214 | PPI |
| MS.gene59884 | MS.gene88440 | PPI |
| MS.gene31416 | MS.gene59884 | PPI |
| MS.gene043467 | MS.gene59884 | PPI |
| MS.gene59884 | MS.gene024895 | PPI |
| MS.gene59884 | MS.gene058374 | PPI |
| MS.gene59884 | MS.gene055768 | PPI |
| MS.gene59884 | MS.gene066925 | PPI |
| MS.gene68113 | MS.gene59884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59884.t1 | MTR_8g046300 | 98.214 | 280 | 5 | 0 | 1 | 280 | 1 | 280 | 0.0 | 562 |
| MS.gene59884.t1 | MTR_3g008250 | 89.130 | 276 | 29 | 1 | 1 | 276 | 1 | 275 | 0.0 | 505 |
| MS.gene59884.t1 | MTR_2g090760 | 53.755 | 253 | 114 | 2 | 20 | 272 | 26 | 275 | 2.11e-92 | 275 |
| MS.gene59884.t1 | MTR_4g078200 | 50.566 | 265 | 127 | 3 | 22 | 284 | 31 | 293 | 8.48e-89 | 266 |
| MS.gene59884.t1 | MTR_4g078200 | 52.609 | 230 | 105 | 3 | 57 | 284 | 5 | 232 | 4.96e-79 | 239 |
| MS.gene59884.t1 | MTR_5g093030 | 53.631 | 179 | 82 | 1 | 1 | 179 | 1 | 178 | 5.19e-60 | 189 |
| MS.gene59884.t1 | MTR_5g093040 | 57.627 | 118 | 40 | 1 | 1 | 118 | 1 | 108 | 9.78e-41 | 137 |
| MS.gene59884.t1 | MTR_6g004320 | 55.224 | 134 | 22 | 1 | 92 | 225 | 1 | 96 | 9.81e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59884.t1 | AT5G40770 | 82.609 | 276 | 48 | 0 | 1 | 276 | 1 | 276 | 1.57e-172 | 478 |
| MS.gene59884.t1 | AT3G27280 | 79.348 | 276 | 57 | 0 | 1 | 276 | 1 | 276 | 1.55e-166 | 462 |
| MS.gene59884.t1 | AT3G27280 | 79.348 | 276 | 57 | 0 | 1 | 276 | 1 | 276 | 1.55e-166 | 462 |
| MS.gene59884.t1 | AT5G14300 | 65.079 | 252 | 62 | 1 | 28 | 279 | 20 | 245 | 6.64e-117 | 336 |
| MS.gene59884.t1 | AT4G28510 | 55.128 | 234 | 104 | 1 | 31 | 264 | 35 | 267 | 2.61e-90 | 270 |
| MS.gene59884.t1 | AT1G03860 | 54.286 | 245 | 109 | 2 | 20 | 264 | 26 | 267 | 4.36e-90 | 269 |
| MS.gene59884.t1 | AT1G03860 | 54.286 | 245 | 109 | 2 | 20 | 264 | 26 | 267 | 4.36e-90 | 269 |
| MS.gene59884.t1 | AT5G44140 | 51.793 | 251 | 120 | 1 | 22 | 272 | 26 | 275 | 3.46e-87 | 261 |
| MS.gene59884.t1 | AT2G20530 | 53.419 | 234 | 108 | 1 | 31 | 264 | 33 | 265 | 6.29e-87 | 261 |
| MS.gene59884.t1 | AT2G20530 | 53.419 | 234 | 108 | 1 | 31 | 264 | 33 | 265 | 6.29e-87 | 261 |
| MS.gene59884.t1 | AT1G03860 | 54.187 | 203 | 92 | 1 | 62 | 264 | 1 | 202 | 2.04e-73 | 224 |
Find 80 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCGTGCCGCTTTCGGCCT+TGG | 0.184654 | 8.3:-53351246 | MS.gene59884:CDS |
| TCTGATGCTACTGCTGCTTT+TGG | 0.196530 | 8.3:-53349857 | MS.gene59884:CDS |
| CCCGTGCCGCTTTCGGCCTT+GGG | 0.268731 | 8.3:-53351245 | MS.gene59884:CDS |
| GTTAACCATTTGAAGATCTT+TGG | 0.270736 | 8.3:+53351029 | None:intergenic |
| CCTACTATTGTTCAGAATCT+TGG | 0.298297 | 8.3:-53350964 | MS.gene59884:CDS |
| AGCGTCGGGCTGCAATTATT+CGG | 0.319888 | 8.3:-53349913 | MS.gene59884:CDS |
| CCTAATGTTACTTATCTTCC+TGG | 0.321773 | 8.3:-53349767 | MS.gene59884:CDS |
| GCGATCACACATTTGTCTTA+TGG | 0.331133 | 8.3:-53350025 | MS.gene59884:CDS |
| GTAGGTAAATTCTCAGTATC+AGG | 0.336718 | 8.3:+53350982 | None:intergenic |
| CTCAGGTGTCTGCACTTGTC+CGG | 0.341306 | 8.3:-53350099 | MS.gene59884:CDS |
| GCAGAAGCAGGTGGCTCAAC+AGG | 0.352028 | 8.3:-53349978 | MS.gene59884:CDS |
| AACGTCGCCCGTGCCGCTTT+CGG | 0.381810 | 8.3:-53351252 | MS.gene59884:CDS |
| CACACTTTCTCTTCAATCTC+TGG | 0.385958 | 8.3:-53351054 | MS.gene59884:CDS |
| GAGAAAGAACACGGAGAGTT+AGG | 0.387555 | 8.3:+53351007 | None:intergenic |
| CGGCACGGGCGACGTTGGTT+AGG | 0.388391 | 8.3:+53351259 | None:intergenic |
| CCCAAGGCCGAAAGCGGCAC+GGG | 0.410260 | 8.3:+53351245 | None:intergenic |
| GAGTTCCTTCACCGATTGAT+TGG | 0.413826 | 8.3:+53351133 | None:intergenic |
| ATTGTAACATTACCGATTGA+AGG | 0.429714 | 8.3:+53350916 | None:intergenic |
| CCAAGATTCTGAACAATAGT+AGG | 0.430812 | 8.3:+53350964 | None:intergenic |
| CCCCAAGGCCGAAAGCGGCA+CGG | 0.432465 | 8.3:+53351244 | None:intergenic |
| GCGTCGGGCTGCAATTATTC+GGG | 0.436071 | 8.3:-53349912 | MS.gene59884:CDS |
| GAAGTCGGAGCAGGAGCGTC+GGG | 0.439105 | 8.3:-53349927 | MS.gene59884:CDS |
| ATGTCTCTTAATACTCCAAC+TGG | 0.441716 | 8.3:-53349728 | MS.gene59884:intron |
| CCAGGAAGATAAGTAACATT+AGG | 0.443017 | 8.3:+53349767 | None:intergenic |
| AGGCGATTTCGCTAACGTCC+TGG | 0.447137 | 8.3:+53349787 | None:intergenic |
| GGAGGTGTTGACAGCGGTTG+CGG | 0.453036 | 8.3:+53351218 | None:intergenic |
| CAGCGGTTGCGGCGGCCCCA+AGG | 0.460159 | 8.3:+53351229 | None:intergenic |
| CTTCACCGATTGATTGGTCG+AGG | 0.465782 | 8.3:+53351139 | None:intergenic |
| CACGTCGGACAAGGCTCTCC+CGG | 0.471995 | 8.3:+53350080 | None:intergenic |
| GGACGGGGTTGATTGAACTT+AGG | 0.481276 | 8.3:-53349835 | MS.gene59884:CDS |
| TCAGGTGTCTGCACTTGTCC+GGG | 0.483059 | 8.3:-53350098 | MS.gene59884:CDS |
| GGCGCGTTGGCCACCGTCGA+CGG | 0.487014 | 8.3:+53351188 | None:intergenic |
| TGTTGTGATGAAGTCGGAGC+AGG | 0.504236 | 8.3:-53349936 | MS.gene59884:CDS |
| GGAATCCTCGACCAATCAAT+CGG | 0.504295 | 8.3:-53351144 | MS.gene59884:CDS |
| GAGCCTTGTCCGACGTGCTA+AGG | 0.504975 | 8.3:-53350074 | MS.gene59884:CDS |
| ACACCTGAGGACGCTCTGTA+AGG | 0.512802 | 8.3:+53350113 | None:intergenic |
| GCGTGCTGTGGAGCAGAAGC+AGG | 0.514540 | 8.3:-53349990 | MS.gene59884:CDS |
| GCTCCTTACAGAGCGTCCTC+AGG | 0.514631 | 8.3:-53350116 | MS.gene59884:CDS |
| GGCCACCGTCGACGGTGTAG+AGG | 0.515496 | 8.3:+53351196 | None:intergenic |
| GGCGGCCCCAAGGCCGAAAG+CGG | 0.519241 | 8.3:+53351239 | None:intergenic |
| TAACATCGTTCTTGATGATG+TGG | 0.521337 | 8.3:-53350047 | MS.gene59884:CDS |
| AAGCTGCTAGAGAAATTGCC+AGG | 0.523849 | 8.3:-53349805 | MS.gene59884:CDS |
| GAACTCATTTCCTCATCCCA+TGG | 0.525793 | 8.3:-53351116 | MS.gene59884:CDS |
| TGGTACCAAAGATCTTCAAA+TGG | 0.533778 | 8.3:-53351034 | MS.gene59884:CDS |
| GGTCGAGGATTCCACGGAAA+CGG | 0.537510 | 8.3:+53351154 | None:intergenic |
| AACTCATTTCCTCATCCCAT+GGG | 0.550217 | 8.3:-53351115 | MS.gene59884:CDS |
| GGTCGAAGAGGACGGCGCGT+TGG | 0.554524 | 8.3:+53351175 | None:intergenic |
| GTCCTCTTCGACCGTTTCCG+TGG | 0.556317 | 8.3:-53351165 | MS.gene59884:CDS |
| ACGGGCGACGTTGGTTAGGA+AGG | 0.561469 | 8.3:+53351263 | None:intergenic |
| AATCCTTAGCACGTCGGACA+AGG | 0.567094 | 8.3:+53350071 | None:intergenic |
| TGAAGTCGGAGCAGGAGCGT+CGG | 0.572437 | 8.3:-53349928 | MS.gene59884:CDS |
| CAGAGATTGAAGAGAAAGTG+TGG | 0.578351 | 8.3:+53351055 | None:intergenic |
| GCTGCAATTATTCGGGCTGA+AGG | 0.586953 | 8.3:-53349905 | MS.gene59884:CDS |
| GAAATTTGTTGTGATGAAGT+CGG | 0.587057 | 8.3:-53349942 | MS.gene59884:CDS |
| TGCTGTGGAGCAGAAGCAGG+TGG | 0.588155 | 8.3:-53349987 | MS.gene59884:CDS |
| AGAGATTGAAGAGAAAGTGT+GGG | 0.588555 | 8.3:+53351056 | None:intergenic |
| TTGATTGGTCGAGGATTCCA+CGG | 0.591485 | 8.3:+53351148 | None:intergenic |
| CTCGACCAATCAATCGGTGA+AGG | 0.593094 | 8.3:-53351138 | MS.gene59884:CDS |
| TTAGGAAGGAGACTGCGGCT+TGG | 0.596955 | 8.3:+53351277 | None:intergenic |
| GGTGTTGACAGCGGTTGCGG+CGG | 0.597165 | 8.3:+53351221 | None:intergenic |
| GAAAGCGGCACGGGCGACGT+TGG | 0.597200 | 8.3:+53351254 | None:intergenic |
| GCCACCGTCGACGGTGTAGA+GGG | 0.600376 | 8.3:+53351197 | None:intergenic |
| ATGATCATGTTATTTCCACC+AGG | 0.609015 | 8.3:+53349749 | None:intergenic |
| ACCTCCCTCTACACCGTCGA+CGG | 0.610203 | 8.3:-53351201 | MS.gene59884:CDS |
| AATGTTACTTATCTTCCTGG+TGG | 0.614739 | 8.3:-53349764 | MS.gene59884:CDS |
| ACGGAAACGGTCGAAGAGGA+CGG | 0.616689 | 8.3:+53351167 | None:intergenic |
| TCCCTCTACACCGTCGACGG+TGG | 0.623772 | 8.3:-53351198 | MS.gene59884:CDS |
| CCGTGCCGCTTTCGGCCTTG+GGG | 0.625277 | 8.3:-53351244 | MS.gene59884:CDS |
| TACATCTTTGATAGGTAACG+AGG | 0.639102 | 8.3:-53350176 | MS.gene59884:intron |
| TTCCACGGAAACGGTCGAAG+AGG | 0.645279 | 8.3:+53351163 | None:intergenic |
| TATCAGGACGAGAAAGAACA+CGG | 0.653503 | 8.3:+53350998 | None:intergenic |
| ACCGTCGACGGTGTAGAGGG+AGG | 0.656882 | 8.3:+53351200 | None:intergenic |
| TCGGGCTGAAGGTGAGAGTG+AGG | 0.657058 | 8.3:-53349894 | MS.gene59884:CDS |
| GTTGGTTAGGAAGGAGACTG+CGG | 0.671219 | 8.3:+53351272 | None:intergenic |
| GAGATTGAAGAGAAAGTGTG+GGG | 0.685729 | 8.3:+53351057 | None:intergenic |
| CGGACAAGTGCAGACACCTG+AGG | 0.691790 | 8.3:+53350100 | None:intergenic |
| GTAGAGGGAGGTGTTGACAG+CGG | 0.702700 | 8.3:+53351212 | None:intergenic |
| TGGCTCAACAGGAAGCAGAG+AGG | 0.714990 | 8.3:-53349967 | MS.gene59884:CDS |
| TGTTAAAATCCTTAGCACGT+CGG | 0.733880 | 8.3:+53350065 | None:intergenic |
| TGTTGTGGCGCAATTCAATG+CGG | 0.748294 | 8.3:-53350143 | MS.gene59884:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTGATTATTCAAAC+AGG | + | chr8.3:53348660-53348679 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTACTTTTTTTGA+AGG | + | chr8.3:53350635-53350654 | None:intergenic | 15.0% |
| !!! | TGAAAATTAATTGTTTTGAT+TGG | - | chr8.3:53349174-53349193 | MS.gene59884:intron | 15.0% |
| !!! | TTTGTTTTACTTTTTTTGAA+GGG | + | chr8.3:53350634-53350653 | None:intergenic | 15.0% |
| !! | ATATATCAACAAAAACCTTA+AGG | - | chr8.3:53349890-53349909 | MS.gene59884:CDS | 20.0% |
| !! | ATCAAAATTCAAACTACTAA+AGG | + | chr8.3:53350659-53350678 | None:intergenic | 20.0% |
| !! | GAAAGTAAAAATTGGAATAT+GGG | - | chr8.3:53350793-53350812 | MS.gene59884:intron | 20.0% |
| !! | GGATATAAATGGATATTTAA+TGG | - | chr8.3:53350014-53350033 | MS.gene59884:CDS | 20.0% |
| !! | TATTCTTTCAACATTTAAGT+TGG | + | chr8.3:53350098-53350117 | None:intergenic | 20.0% |
| !! | TGCATGAAAAATAATCTATT+TGG | - | chr8.3:53348988-53349007 | MS.gene59884:intron | 20.0% |
| !! | TGCATGAGAATTAATTTATT+TGG | - | chr8.3:53348929-53348948 | MS.gene59884:intron | 20.0% |
| !!! | GCTGTTTTTATAAACTATAT+TGG | - | chr8.3:53348762-53348781 | MS.gene59884:intron | 20.0% |
| !!! | TAAACCATTTCTATTTTGAT+AGG | + | chr8.3:53350155-53350174 | None:intergenic | 20.0% |
| !!! | TATCTAGTAGTATAAGTTTT+GGG | + | chr8.3:53348829-53348848 | None:intergenic | 20.0% |
| !!! | TTAAGACCTTTTTTAAAACT+CGG | - | chr8.3:53349932-53349951 | MS.gene59884:CDS | 20.0% |
| !!! | TTATCTAGTAGTATAAGTTT+TGG | + | chr8.3:53348830-53348849 | None:intergenic | 20.0% |
| !!! | TTGTTTTACTTTTTTTGAAG+GGG | + | chr8.3:53350633-53350652 | None:intergenic | 20.0% |
| ! | AAAAAAAAGTCTTAAGCTGT+CGG | - | chr8.3:53349147-53349166 | MS.gene59884:intron | 25.0% |
| ! | AAATGTATCGTGTCTAAATA+AGG | - | chr8.3:53350120-53350139 | MS.gene59884:CDS | 25.0% |
| ! | ACACCAAAAGATATATAGAT+TGG | + | chr8.3:53348864-53348883 | None:intergenic | 25.0% |
| ! | ACATATGACAATATTCAGTT+AGG | - | chr8.3:53350179-53350198 | MS.gene59884:intron | 25.0% |
| ! | ACATATTTGTTCCATTATCA+AGG | + | chr8.3:53349290-53349309 | None:intergenic | 25.0% |
| ! | ACCTATAAATGATTGAATCA+GGG | - | chr8.3:53350548-53350567 | MS.gene59884:intron | 25.0% |
| ! | ATGACCTATCAAAATAGAAA+TGG | - | chr8.3:53350148-53350167 | MS.gene59884:CDS | 25.0% |
| ! | CTAACTATTACATCTTTGAT+AGG | - | chr8.3:53349312-53349331 | MS.gene59884:intron | 25.0% |
| ! | GGAAAGTAAAAATTGGAATA+TGG | - | chr8.3:53350792-53350811 | MS.gene59884:intron | 25.0% |
| ! | TGAAAACAGGTTAAGTATAT+AGG | + | chr8.3:53351273-53351292 | None:intergenic | 25.0% |
| ! | TGCATGAAAATTGATCTATT+TGG | - | chr8.3:53349108-53349127 | MS.gene59884:intron | 25.0% |
| ! | TGCATTAGAATTAATCTATC+TGG | - | chr8.3:53349048-53349067 | MS.gene59884:intron | 25.0% |
| ! | TGGTTACAATTGGATATAAA+TGG | - | chr8.3:53350003-53350022 | MS.gene59884:CDS | 25.0% |
| ! | TTAAATATGTGTGACTTAAC+AGG | + | chr8.3:53350862-53350881 | None:intergenic | 25.0% |
| ! | TTATGGAGGAAAGTAAAAAT+TGG | - | chr8.3:53350785-53350804 | MS.gene59884:intron | 25.0% |
| !! | AAAGAATGTAGCGAAATTTT+GGG | - | chr8.3:53350468-53350487 | MS.gene59884:intron | 25.0% |
| !! | AAGCCAATCTATATATCTTT+TGG | - | chr8.3:53348858-53348877 | MS.gene59884:intron | 25.0% |
| !! | ATTTTTACTTTCCTCCATAA+TGG | + | chr8.3:53350785-53350804 | None:intergenic | 25.0% |
| !! | GTGTTTATTCTCTTTATTTG+TGG | - | chr8.3:53349983-53350002 | MS.gene59884:CDS | 25.0% |
| !! | TAAAGAATGTAGCGAAATTT+TGG | - | chr8.3:53350467-53350486 | MS.gene59884:intron | 25.0% |
| !! | TATATACTTAACCTGTTTTC+AGG | - | chr8.3:53351272-53351291 | MS.gene59884:CDS | 25.0% |
| !! | TCTTTATTTGTGGTTACAAT+TGG | - | chr8.3:53349993-53350012 | MS.gene59884:CDS | 25.0% |
| !! | TTAGTTTGATGTTGTATGTT+AGG | - | chr8.3:53350504-53350523 | MS.gene59884:intron | 25.0% |
| !!! | AGGAGTTACTTGTTTTAAAT+TGG | + | chr8.3:53349270-53349289 | None:intergenic | 25.0% |
| !!! | ATAAACCCGAGTTTTAAAAA+AGG | + | chr8.3:53349941-53349960 | None:intergenic | 25.0% |
| !!! | GTATTTTTGGAATTTCAGTT+GGG | - | chr8.3:53350909-53350928 | MS.gene59884:intron | 25.0% |
| !!! | TAAGACCTTTTTTAAAACTC+GGG | - | chr8.3:53349933-53349952 | MS.gene59884:CDS | 25.0% |
| !!! | TGTTGGTAAGATTCAATTTT+TGG | - | chr8.3:53349802-53349821 | MS.gene59884:CDS | 25.0% |
| !!! | TTTTTTATCAAACCCAACTT+TGG | - | chr8.3:53350973-53350992 | MS.gene59884:CDS | 25.0% |
| AAATTGTTTGATAGAGAGAG+CGG | - | chr8.3:53350250-53350269 | MS.gene59884:intron | 30.0% | |
| AACAAGTAACTCCTTGATAA+TGG | - | chr8.3:53349276-53349295 | MS.gene59884:intron | 30.0% | |
| AATATTCAGTTAGGTGGTAT+AGG | - | chr8.3:53350188-53350207 | MS.gene59884:intron | 30.0% | |
| ACCCTGATTCAATCATTTAT+AGG | + | chr8.3:53350552-53350571 | None:intergenic | 30.0% | |
| AGATATCTCAGCTTATTTCA+AGG | + | chr8.3:53350379-53350398 | None:intergenic | 30.0% | |
| ATGAAATGGAACTCAATTGT+TGG | + | chr8.3:53350345-53350364 | None:intergenic | 30.0% | |
| CAATATGAACAGTAACCTTA+AGG | + | chr8.3:53349908-53349927 | None:intergenic | 30.0% | |
| CACCTATAAATGATTGAATC+AGG | - | chr8.3:53350547-53350566 | MS.gene59884:intron | 30.0% | |
| CTGATTCAATCATTTATAGG+TGG | + | chr8.3:53350549-53350568 | None:intergenic | 30.0% | |
| GAAAAAGTTCTTCCTTCAAT+CGG | - | chr8.3:53348568-53348587 | MS.gene59884:intron | 30.0% | |
| GAAATAAGCTGAGATATCTA+GGG | - | chr8.3:53350380-53350399 | MS.gene59884:intron | 30.0% | |
| GAGAATTAATTTATTTGGCG+TGG | - | chr8.3:53348934-53348953 | MS.gene59884:intron | 30.0% | |
| GTTAACCATTTGAAGATCTT+TGG | + | chr8.3:53348470-53348489 | None:intergenic | 30.0% | |
| TAAGGTTACTGTTCATATTG+TGG | - | chr8.3:53349908-53349927 | MS.gene59884:CDS | 30.0% | |
| TATGACAATATTCAGTTAGG+TGG | - | chr8.3:53350182-53350201 | MS.gene59884:intron | 30.0% | |
| TCTATTTGGCATGAATTGAT+TGG | - | chr8.3:53349002-53349021 | MS.gene59884:intron | 30.0% | |
| TGAAATAAGCTGAGATATCT+AGG | - | chr8.3:53350379-53350398 | MS.gene59884:intron | 30.0% | |
| TTAATTTATTTGGCGTGGTT+AGG | - | chr8.3:53348939-53348958 | MS.gene59884:intron | 30.0% | |
| TTGATAGAATGAGTACATTG+AGG | - | chr8.3:53349235-53349254 | MS.gene59884:intron | 30.0% | |
| ! | ATTGTAACATTACCGATTGA+AGG | + | chr8.3:53348583-53348602 | None:intergenic | 30.0% |
| !! | CGTATTGATAGAAGTATCTA+GGG | - | chr8.3:53348634-53348653 | MS.gene59884:intron | 30.0% |
| !! | GAAATTTGTTGTGATGAAGT+CGG | - | chr8.3:53349554-53349573 | MS.gene59884:intron | 30.0% |
| !! | GATTATTTTTCATGCACTGA+TGG | + | chr8.3:53348984-53349003 | None:intergenic | 30.0% |
| !! | GTGTTTGATTTTTCATTGCT+AGG | - | chr8.3:53349824-53349843 | MS.gene59884:CDS | 30.0% |
| !! | GTTTTGATATCGAAGATGTA+AGG | + | chr8.3:53348415-53348434 | None:intergenic | 30.0% |
| !!! | GGTATTTTTGGAATTTCAGT+TGG | - | chr8.3:53350908-53350927 | MS.gene59884:intron | 30.0% |
| AATTGTTTGATAGAGAGAGC+GGG | - | chr8.3:53350251-53350270 | MS.gene59884:intron | 35.0% | |
| ATACTAGGCAGTTTAAAGGT+TGG | + | chr8.3:53351204-53351223 | None:intergenic | 35.0% | |
| ATATGTGTGACTTAACAGGT+TGG | + | chr8.3:53351030-53351049 | None:intergenic | 35.0% | |
| ATGTCTCTTAATACTCCAAC+TGG | - | chr8.3:53349768-53349787 | MS.gene59884:CDS | 35.0% | |
| CAACACATTCACACTACTAA+AGG | + | chr8.3:53350725-53350744 | None:intergenic | 35.0% | |
| CACTTGCATGCTTCTAATAA+TGG | + | chr8.3:53350755-53350774 | None:intergenic | 35.0% | |
| CCAAGATTCTGAACAATAGT+AGG | + | chr8.3:53348535-53348554 | None:intergenic | 35.0% | |
| CCAGGAAGATAAGTAACATT+AGG | + | chr8.3:53349732-53349751 | None:intergenic | 35.0% | |
| CCTACTATTGTTCAGAATCT+TGG | - | chr8.3:53348532-53348551 | MS.gene59884:intron | 35.0% | |
| GCATAGCATGTTAAGAGATA+CGG | + | chr8.3:53350227-53350246 | None:intergenic | 35.0% | |
| GCTAATACTAGGCAGTTTAA+AGG | + | chr8.3:53351208-53351227 | None:intergenic | 35.0% | |
| GTAGGTAAATTCTCAGTATC+AGG | + | chr8.3:53348517-53348536 | None:intergenic | 35.0% | |
| TACATCTTTGATAGGTAACG+AGG | - | chr8.3:53349320-53349339 | MS.gene59884:intron | 35.0% | |
| TCTATCTGGTGTGATTTGAT+TGG | - | chr8.3:53349062-53349081 | MS.gene59884:intron | 35.0% | |
| TGGTACCAAAGATCTTCAAA+TGG | - | chr8.3:53348462-53348481 | MS.gene59884:intron | 35.0% | |
| TGTATCGTGTCTAAATAAGG+TGG | - | chr8.3:53350123-53350142 | MS.gene59884:CDS | 35.0% | |
| TGTTAAAATCCTTAGCACGT+CGG | + | chr8.3:53349434-53349453 | None:intergenic | 35.0% | |
| ! | AATGTTACTTATCTTCCTGG+TGG | - | chr8.3:53349732-53349751 | MS.gene59884:CDS | 35.0% |
| ! | AGAGATTGAAGAGAAAGTGT+GGG | + | chr8.3:53348443-53348462 | None:intergenic | 35.0% |
| ! | CATTATTAGAAGCATGCAAG+TGG | - | chr8.3:53350753-53350772 | MS.gene59884:intron | 35.0% |
| ! | CCTAATGTTACTTATCTTCC+TGG | - | chr8.3:53349729-53349748 | MS.gene59884:CDS | 35.0% |
| ! | GATCAATTTTCATGCAGCAA+CGG | + | chr8.3:53349104-53349123 | None:intergenic | 35.0% |
| ! | TGGTCTTGCATACTCTAATT+TGG | - | chr8.3:53350993-53351012 | MS.gene59884:CDS | 35.0% |
| !! | ATACTTAACCTGTTTTCAGG+CGG | - | chr8.3:53351275-53351294 | MS.gene59884:CDS | 35.0% |
| !! | ATGATCATGTTATTTCCACC+AGG | + | chr8.3:53349750-53349769 | None:intergenic | 35.0% |
| !! | GCGTATTGATAGAAGTATCT+AGG | - | chr8.3:53348633-53348652 | MS.gene59884:intron | 35.0% |
| !! | GTGGTATAGGTTGGTATATA+GGG | - | chr8.3:53350201-53350220 | MS.gene59884:intron | 35.0% |
| !! | TAACATCGTTCTTGATGATG+TGG | - | chr8.3:53349449-53349468 | MS.gene59884:intron | 35.0% |
| !!! | CATTGCTAGGTTTTGAATTG+TGG | - | chr8.3:53349837-53349856 | MS.gene59884:CDS | 35.0% |
| !!! | TTTTTTTGAAGGGGAAGAAG+AGG | + | chr8.3:53350624-53350643 | None:intergenic | 35.0% |
| AACAACAATCAACGACCAGT+TGG | + | chr8.3:53349786-53349805 | None:intergenic | 40.0% | |
| AACTCATTTCCTCATCCCAT+GGG | - | chr8.3:53348381-53348400 | MS.gene59884:intron | 40.0% | |
| AAGCTGAGATATCTAGGGAT+TGG | - | chr8.3:53350385-53350404 | MS.gene59884:intron | 40.0% | |
| AGAGTATGCAAGACCAAAGT+TGG | + | chr8.3:53350989-53351008 | None:intergenic | 40.0% | |
| AGTGGAAGAAACCATTATGG+AGG | - | chr8.3:53350771-53350790 | MS.gene59884:intron | 40.0% | |
| AGTTGGACACATTCAGAATC+TGG | + | chr8.3:53350081-53350100 | None:intergenic | 40.0% | |
| CACACTTTCTCTTCAATCTC+TGG | - | chr8.3:53348442-53348461 | MS.gene59884:intron | 40.0% | |
| CAGAGATTGAAGAGAAAGTG+TGG | + | chr8.3:53348444-53348463 | None:intergenic | 40.0% | |
| GAGTATGCAAGACCAAAGTT+GGG | + | chr8.3:53350988-53351007 | None:intergenic | 40.0% | |
| GCAAGTGGAAGAAACCATTA+TGG | - | chr8.3:53350768-53350787 | MS.gene59884:intron | 40.0% | |
| GCGATCACACATTTGTCTTA+TGG | - | chr8.3:53349471-53349490 | MS.gene59884:intron | 40.0% | |
| GGCAGTTTAAAGGTTGGAAT+AGG | + | chr8.3:53351198-53351217 | None:intergenic | 40.0% | |
| TATCAGGACGAGAAAGAACA+CGG | + | chr8.3:53348501-53348520 | None:intergenic | 40.0% | |
| TGAATTGTGGCAATAGTCGT+GGG | - | chr8.3:53349850-53349869 | MS.gene59884:CDS | 40.0% | |
| TTCAGTTAGGTGGTATAGGT+TGG | - | chr8.3:53350192-53350211 | MS.gene59884:intron | 40.0% | |
| TTGAATTGTGGCAATAGTCG+TGG | - | chr8.3:53349849-53349868 | MS.gene59884:CDS | 40.0% | |
| TTGATCTATTTGGCGTGACT+TGG | - | chr8.3:53349118-53349137 | MS.gene59884:intron | 40.0% | |
| TTTATTTGGCGTGGTTAGGT+TGG | - | chr8.3:53348943-53348962 | MS.gene59884:intron | 40.0% | |
| ! | AACTGGTCGTTGATTGTTGT+TGG | - | chr8.3:53349785-53349804 | MS.gene59884:CDS | 40.0% |
| ! | ATGTAAGGCTTTTGAACCCA+TGG | + | chr8.3:53348400-53348419 | None:intergenic | 40.0% |
| ! | GAGATTGAAGAGAAAGTGTG+GGG | + | chr8.3:53348442-53348461 | None:intergenic | 40.0% |
| ! | GTGACTTAACAGGTTGGAAT+AGG | + | chr8.3:53351024-53351043 | None:intergenic | 40.0% |
| ! | TGTAAGGCTTTTGAACCCAT+GGG | + | chr8.3:53348399-53348418 | None:intergenic | 40.0% |
| !! | GGTGGTATAGGTTGGTATAT+AGG | - | chr8.3:53350200-53350219 | MS.gene59884:intron | 40.0% |
| !!! | AACTCACACAGGGGTATTTT+TGG | - | chr8.3:53350896-53350915 | MS.gene59884:intron | 40.0% |
| AAGCTGCTAGAGAAATTGCC+AGG | - | chr8.3:53349691-53349710 | MS.gene59884:intron | 45.0% | |
| AGCGTGAGTTAACTCACACA+GGG | - | chr8.3:53350886-53350905 | MS.gene59884:intron | 45.0% | |
| AGGCATCAGCTCACATGAAA+TGG | + | chr8.3:53350359-53350378 | None:intergenic | 45.0% | |
| ATCCCGAGTCAGCTAATACT+AGG | + | chr8.3:53351219-53351238 | None:intergenic | 45.0% | |
| CTGCCTAGTATTAGCTGACT+CGG | - | chr8.3:53351213-53351232 | MS.gene59884:CDS | 45.0% | |
| GAACTCATTTCCTCATCCCA+TGG | - | chr8.3:53348380-53348399 | MS.gene59884:intron | 45.0% | |
| GAGAAAGAACACGGAGAGTT+AGG | + | chr8.3:53348492-53348511 | None:intergenic | 45.0% | |
| GGAATCCTCGACCAATCAAT+CGG | - | chr8.3:53348352-53348371 | MS.gene59884:intron | 45.0% | |
| TAGCGTGAGTTAACTCACAC+AGG | - | chr8.3:53350885-53350904 | MS.gene59884:intron | 45.0% | |
| TGTTGTGGCGCAATTCAATG+CGG | - | chr8.3:53349353-53349372 | MS.gene59884:intron | 45.0% | |
| ! | GAGTTCCTTCACCGATTGAT+TGG | + | chr8.3:53348366-53348385 | None:intergenic | 45.0% |
| ! | TACTGAATTTTCGCGTGCTG+TGG | - | chr8.3:53349494-53349513 | MS.gene59884:intron | 45.0% |
| ! | TGCCTAGTATTAGCTGACTC+GGG | - | chr8.3:53351214-53351233 | MS.gene59884:CDS | 45.0% |
| ! | TTGATTGGTCGAGGATTCCA+CGG | + | chr8.3:53348351-53348370 | None:intergenic | 45.0% |
| !! | TCTATTTGGCGTGACTTGGT+TGG | - | chr8.3:53349122-53349141 | MS.gene59884:intron | 45.0% |
| !!! | CGAGGTTTTGAAAGCTGTTG+TGG | - | chr8.3:53349338-53349357 | MS.gene59884:intron | 45.0% |
| !!! | CTGATGCTACTGCTGCTTTT+GGG | - | chr8.3:53349640-53349659 | MS.gene59884:intron | 45.0% |
| !!! | TCTGATGCTACTGCTGCTTT+TGG | - | chr8.3:53349639-53349658 | MS.gene59884:intron | 45.0% |
| AATCCTTAGCACGTCGGACA+AGG | + | chr8.3:53349428-53349447 | None:intergenic | 50.0% | |
| CACACTGAGTTAACTCACGC+TGG | + | chr8.3:53350828-53350847 | None:intergenic | 50.0% | |
| CTCGACCAATCAATCGGTGA+AGG | - | chr8.3:53348358-53348377 | MS.gene59884:intron | 50.0% | |
| GAAGAGGTAGACACGTTCAG+AGG | + | chr8.3:53350608-53350627 | None:intergenic | 50.0% | |
| GATAGAGAGAGCGGGTAGAA+AGG | - | chr8.3:53350259-53350278 | MS.gene59884:intron | 50.0% | |
| GCGTGAGTTAACTCACACAG+GGG | - | chr8.3:53350887-53350906 | MS.gene59884:intron | 50.0% | |
| GCTGCAATTATTCGGGCTGA+AGG | - | chr8.3:53349591-53349610 | MS.gene59884:intron | 50.0% | |
| GTTGGTTAGGAAGGAGACTG+CGG | + | chr8.3:53348227-53348246 | None:intergenic | 50.0% | |
| TGTTGTGATGAAGTCGGAGC+AGG | - | chr8.3:53349560-53349579 | MS.gene59884:intron | 50.0% | |
| ! | AGCGTCGGGCTGCAATTATT+CGG | - | chr8.3:53349583-53349602 | MS.gene59884:intron | 50.0% |
| ! | CTTCACCGATTGATTGGTCG+AGG | + | chr8.3:53348360-53348379 | None:intergenic | 50.0% |
| ! | GCTTTTGAACCCATGGGATG+AGG | + | chr8.3:53348393-53348412 | None:intergenic | 50.0% |
| ! | GGACGGGGTTGATTGAACTT+AGG | - | chr8.3:53349661-53349680 | MS.gene59884:intron | 50.0% |
| !! | CTTAACCTGTTTTCAGGCGG+CGG | - | chr8.3:53351278-53351297 | MS.gene59884:CDS | 50.0% |
| !! | TTAACCTGTTTTCAGGCGGC+GGG | - | chr8.3:53351279-53351298 | MS.gene59884:CDS | 50.0% |
| !!! | TGCTACTGCTGCTTTTGGGA+CGG | - | chr8.3:53349644-53349663 | MS.gene59884:intron | 50.0% |
| ACACCTGAGGACGCTCTGTA+AGG | + | chr8.3:53349386-53349405 | None:intergenic | 55.0% | |
| ACGGAAACGGTCGAAGAGGA+CGG | + | chr8.3:53348332-53348351 | None:intergenic | 55.0% | |
| AGGCGATTTCGCTAACGTCC+TGG | + | chr8.3:53349712-53349731 | None:intergenic | 55.0% | |
| CTCAGGTGTCTGCACTTGTC+CGG | - | chr8.3:53349397-53349416 | MS.gene59884:intron | 55.0% | |
| GAGAGCGGGTAGAAAGGTTG+AGG | - | chr8.3:53350265-53350284 | MS.gene59884:intron | 55.0% | |
| GCGTCGGGCTGCAATTATTC+GGG | - | chr8.3:53349584-53349603 | MS.gene59884:intron | 55.0% | |
| GGTCGAGGATTCCACGGAAA+CGG | + | chr8.3:53348345-53348364 | None:intergenic | 55.0% | |
| TCAGGTGTCTGCACTTGTCC+GGG | - | chr8.3:53349398-53349417 | MS.gene59884:intron | 55.0% | |
| TGGCTCAACAGGAAGCAGAG+AGG | - | chr8.3:53349529-53349548 | MS.gene59884:intron | 55.0% | |
| TTAGGAAGGAGACTGCGGCT+TGG | + | chr8.3:53348222-53348241 | None:intergenic | 55.0% | |
| TTCCACGGAAACGGTCGAAG+AGG | + | chr8.3:53348336-53348355 | None:intergenic | 55.0% | |
| !! | GTAGAGGGAGGTGTTGACAG+CGG | + | chr8.3:53348287-53348306 | None:intergenic | 55.0% |
| !!! | CTACTGCTGCTTTTGGGACG+GGG | - | chr8.3:53349646-53349665 | MS.gene59884:intron | 55.0% |
| !!! | GCTACTGCTGCTTTTGGGAC+GGG | - | chr8.3:53349645-53349664 | MS.gene59884:intron | 55.0% |
| ACCTCCCTCTACACCGTCGA+CGG | - | chr8.3:53348295-53348314 | MS.gene59884:intron | 60.0% | |
| CGGACAAGTGCAGACACCTG+AGG | + | chr8.3:53349399-53349418 | None:intergenic | 60.0% | |
| GCAGAAGCAGGTGGCTCAAC+AGG | - | chr8.3:53349518-53349537 | MS.gene59884:intron | 60.0% | |
| GTCCTCTTCGACCGTTTCCG+TGG | - | chr8.3:53348331-53348350 | MS.gene59884:intron | 60.0% | |
| GTTTCCCGCCGCCTGAAAAC+AGG | + | chr8.3:53351286-53351305 | None:intergenic | 60.0% | |
| TCGGGCTGAAGGTGAGAGTG+AGG | - | chr8.3:53349602-53349621 | MS.gene59884:intron | 60.0% | |
| TGCTGTGGAGCAGAAGCAGG+TGG | - | chr8.3:53349509-53349528 | MS.gene59884:intron | 60.0% | |
| ! | ACGGGCGACGTTGGTTAGGA+AGG | + | chr8.3:53348236-53348255 | None:intergenic | 60.0% |
| ! | GAGCCTTGTCCGACGTGCTA+AGG | - | chr8.3:53349422-53349441 | MS.gene59884:intron | 60.0% |
| ! | GCTCCTTACAGAGCGTCCTC+AGG | - | chr8.3:53349380-53349399 | MS.gene59884:intron | 60.0% |
| ! | TGAAGTCGGAGCAGGAGCGT+CGG | - | chr8.3:53349568-53349587 | MS.gene59884:intron | 60.0% |
| !! | GGAGGTGTTGACAGCGGTTG+CGG | + | chr8.3:53348281-53348300 | None:intergenic | 60.0% |
| ACCGTCGACGGTGTAGAGGG+AGG | + | chr8.3:53348299-53348318 | None:intergenic | 65.0% | |
| CACGTCGGACAAGGCTCTCC+CGG | + | chr8.3:53349419-53349438 | None:intergenic | 65.0% | |
| GCCACCGTCGACGGTGTAGA+GGG | + | chr8.3:53348302-53348321 | None:intergenic | 65.0% | |
| GCGTGCTGTGGAGCAGAAGC+AGG | - | chr8.3:53349506-53349525 | MS.gene59884:intron | 65.0% | |
| TCCCTCTACACCGTCGACGG+TGG | - | chr8.3:53348298-53348317 | MS.gene59884:intron | 65.0% | |
| !! | AACGTCGCCCGTGCCGCTTT+CGG | - | chr8.3:53348244-53348263 | MS.gene59884:intron | 65.0% |
| !! | GAAGTCGGAGCAGGAGCGTC+GGG | - | chr8.3:53349569-53349588 | MS.gene59884:intron | 65.0% |
| !! | GGTGTTGACAGCGGTTGCGG+CGG | + | chr8.3:53348278-53348297 | None:intergenic | 65.0% |
| CCCAAGGCCGAAAGCGGCAC+GGG | + | chr8.3:53348254-53348273 | None:intergenic | 70.0% | |
| CCCCAAGGCCGAAAGCGGCA+CGG | + | chr8.3:53348255-53348274 | None:intergenic | 70.0% | |
| GAAAGCGGCACGGGCGACGT+TGG | + | chr8.3:53348245-53348264 | None:intergenic | 70.0% | |
| GGCCACCGTCGACGGTGTAG+AGG | + | chr8.3:53348303-53348322 | None:intergenic | 70.0% | |
| GGTCGAAGAGGACGGCGCGT+TGG | + | chr8.3:53348324-53348343 | None:intergenic | 70.0% | |
| ! | CGGCACGGGCGACGTTGGTT+AGG | + | chr8.3:53348240-53348259 | None:intergenic | 70.0% |
| !! | CCCGTGCCGCTTTCGGCCTT+GGG | - | chr8.3:53348251-53348270 | MS.gene59884:intron | 70.0% |
| !! | CCGTGCCGCTTTCGGCCTTG+GGG | - | chr8.3:53348252-53348271 | MS.gene59884:intron | 70.0% |
| GGCGGCCCCAAGGCCGAAAG+CGG | + | chr8.3:53348260-53348279 | None:intergenic | 75.0% | |
| ! | GGCGCGTTGGCCACCGTCGA+CGG | + | chr8.3:53348311-53348330 | None:intergenic | 75.0% |
| !! | GCCCGTGCCGCTTTCGGCCT+TGG | - | chr8.3:53348250-53348269 | MS.gene59884:intron | 75.0% |
| ! | CAGCGGTTGCGGCGGCCCCA+AGG | + | chr8.3:53348270-53348289 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53348208 | 53351310 | 53348208 | ID=MS.gene59884 |
| chr8.3 | mRNA | 53348208 | 53351310 | 53348208 | ID=MS.gene59884.t1;Parent=MS.gene59884 |
| chr8.3 | exon | 53350929 | 53351310 | 53350929 | ID=MS.gene59884.t1.exon1;Parent=MS.gene59884.t1 |
| chr8.3 | CDS | 53350929 | 53351310 | 53350929 | ID=cds.MS.gene59884.t1;Parent=MS.gene59884.t1 |
| chr8.3 | exon | 53349729 | 53350184 | 53349729 | ID=MS.gene59884.t1.exon2;Parent=MS.gene59884.t1 |
| chr8.3 | CDS | 53349729 | 53350184 | 53349729 | ID=cds.MS.gene59884.t1;Parent=MS.gene59884.t1 |
| chr8.3 | exon | 53348208 | 53348224 | 53348208 | ID=MS.gene59884.t1.exon3;Parent=MS.gene59884.t1 |
| chr8.3 | CDS | 53348208 | 53348224 | 53348208 | ID=cds.MS.gene59884.t1;Parent=MS.gene59884.t1 |
| Gene Sequence |
| Protein sequence |
