Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067266.t1 | XP_003628253.2 | 91.1 | 281 | 25 | 0 | 1 | 281 | 1 | 281 | 7.80E-132 | 479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067266.t1 | O04331 | 76.1 | 276 | 66 | 0 | 1 | 276 | 1 | 276 | 1.9e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067266.t1 | G7L8K5 | 91.1 | 281 | 25 | 0 | 1 | 281 | 1 | 281 | 5.6e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058374 | MS.gene067266 | PPI |
| MS.gene09764 | MS.gene067266 | PPI |
| MS.gene067266 | MS.gene024895 | PPI |
| MS.gene016544 | MS.gene067266 | PPI |
| MS.gene067266 | MS.gene015412 | PPI |
| MS.gene067266 | MS.gene066925 | PPI |
| MS.gene99648 | MS.gene067266 | PPI |
| MS.gene59884 | MS.gene067266 | PPI |
| MS.gene063067 | MS.gene067266 | PPI |
| MS.gene92318 | MS.gene067266 | PPI |
| MS.gene067266 | MS.gene028857 | PPI |
| MS.gene78840 | MS.gene067266 | PPI |
| MS.gene067266 | MS.gene91416 | PPI |
| MS.gene067266 | MS.gene80094 | PPI |
| MS.gene000128 | MS.gene067266 | PPI |
| MS.gene067266 | MS.gene016292 | PPI |
| MS.gene067266 | MS.gene59883 | PPI |
| MS.gene067266 | MS.gene063809 | PPI |
| MS.gene59883 | MS.gene067266 | PPI |
| MS.gene68716 | MS.gene067266 | PPI |
| MS.gene31416 | MS.gene067266 | PPI |
| MS.gene88440 | MS.gene067266 | PPI |
| MS.gene014181 | MS.gene067266 | PPI |
| MS.gene055768 | MS.gene067266 | PPI |
| MS.gene68113 | MS.gene067266 | PPI |
| MS.gene009411 | MS.gene067266 | PPI |
| MS.gene61084 | MS.gene067266 | PPI |
| MS.gene043467 | MS.gene067266 | PPI |
| MS.gene067266 | MS.gene56214 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067266.t1 | MTR_8g046300 | 97.509 | 281 | 7 | 0 | 1 | 281 | 1 | 281 | 0.0 | 561 |
| MS.gene067266.t1 | MTR_3g008250 | 88.768 | 276 | 30 | 1 | 1 | 276 | 1 | 275 | 0.0 | 504 |
| MS.gene067266.t1 | MTR_2g090760 | 54.400 | 250 | 111 | 2 | 20 | 269 | 26 | 272 | 2.11e-92 | 275 |
| MS.gene067266.t1 | MTR_4g078200 | 53.689 | 244 | 112 | 1 | 22 | 265 | 31 | 273 | 1.75e-89 | 268 |
| MS.gene067266.t1 | MTR_4g078200 | 53.571 | 224 | 102 | 2 | 57 | 280 | 5 | 226 | 1.71e-79 | 240 |
| MS.gene067266.t1 | MTR_5g093030 | 53.631 | 179 | 82 | 1 | 1 | 179 | 1 | 178 | 1.35e-59 | 188 |
| MS.gene067266.t1 | MTR_5g093040 | 57.627 | 118 | 40 | 1 | 1 | 118 | 1 | 108 | 2.51e-40 | 136 |
| MS.gene067266.t1 | MTR_6g004320 | 55.970 | 134 | 21 | 1 | 92 | 225 | 1 | 96 | 5.51e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067266.t1 | AT5G40770 | 82.609 | 276 | 48 | 0 | 1 | 276 | 1 | 276 | 1.47e-172 | 478 |
| MS.gene067266.t1 | AT3G27280 | 79.710 | 276 | 56 | 0 | 1 | 276 | 1 | 276 | 4.92e-167 | 464 |
| MS.gene067266.t1 | AT3G27280 | 79.710 | 276 | 56 | 0 | 1 | 276 | 1 | 276 | 4.92e-167 | 464 |
| MS.gene067266.t1 | AT5G14300 | 65.079 | 252 | 62 | 1 | 28 | 279 | 20 | 245 | 6.68e-117 | 336 |
| MS.gene067266.t1 | AT4G28510 | 55.556 | 234 | 103 | 1 | 31 | 264 | 35 | 267 | 5.15e-91 | 271 |
| MS.gene067266.t1 | AT1G03860 | 54.321 | 243 | 110 | 1 | 22 | 264 | 26 | 267 | 6.13e-91 | 271 |
| MS.gene067266.t1 | AT1G03860 | 54.321 | 243 | 110 | 1 | 22 | 264 | 26 | 267 | 6.13e-91 | 271 |
| MS.gene067266.t1 | AT5G44140 | 52.191 | 251 | 119 | 1 | 22 | 272 | 26 | 275 | 5.21e-88 | 263 |
| MS.gene067266.t1 | AT2G20530 | 52.263 | 243 | 115 | 1 | 22 | 264 | 24 | 265 | 1.16e-87 | 263 |
| MS.gene067266.t1 | AT2G20530 | 52.263 | 243 | 115 | 1 | 22 | 264 | 24 | 265 | 1.16e-87 | 263 |
| MS.gene067266.t1 | AT1G03860 | 54.680 | 203 | 91 | 1 | 62 | 264 | 1 | 202 | 3.33e-74 | 226 |
Find 81 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCTACTGCTGCTTT+TGG | 0.196530 | 8.1:-59353427 | MS.gene067266:CDS |
| GCCCGTGCCGCTTTCGGCCT+TGG | 0.198321 | 8.1:-59354773 | MS.gene067266:CDS |
| GAACCCATGGGATGAGAAAA+TGG | 0.212561 | 8.1:+59354639 | None:intergenic |
| AGCGTCGGGCTGCGATTATT+CGG | 0.270244 | 8.1:-59353483 | MS.gene067266:CDS |
| GTTAACCATCTGAAGATCTT+TGG | 0.292822 | 8.1:+59354556 | None:intergenic |
| CCTAATGTTACTTATCTTCC+TGG | 0.321773 | 8.1:-59353337 | MS.gene067266:CDS |
| GCTATCACGCATTTGTCTTA+TGG | 0.335777 | 8.1:-59353595 | MS.gene067266:CDS |
| CACAGGTGTCTGCACTTGTC+CGG | 0.350252 | 8.1:-59353669 | MS.gene067266:CDS |
| GCAGAAGCAGGTGGCTCAAC+AGG | 0.352028 | 8.1:-59353548 | MS.gene067266:CDS |
| AACGTCGCCCGTGCCGCTTT+CGG | 0.381810 | 8.1:-59354779 | MS.gene067266:CDS |
| GTAGGTAAATTATCGGTATC+AGG | 0.385926 | 8.1:+59354509 | None:intergenic |
| GAGAAAGAACACGGAGAGTT+AGG | 0.387555 | 8.1:+59354534 | None:intergenic |
| CGGCACGGGCGACGTTGGTT+AGG | 0.388391 | 8.1:+59354786 | None:intergenic |
| GCCAAGGCCGAAAGCGGCAC+GGG | 0.400953 | 8.1:+59354772 | None:intergenic |
| AACAATGGTAGGTAAATTAT+CGG | 0.413113 | 8.1:+59354502 | None:intergenic |
| CGCCAAGGCCGAAAGCGGCA+CGG | 0.419444 | 8.1:+59354771 | None:intergenic |
| CACACTTTCTCCTCAATCTC+TGG | 0.422972 | 8.1:-59354581 | MS.gene067266:CDS |
| ATTATAACATTACCGATTGA+AGG | 0.429304 | 8.1:+59354443 | None:intergenic |
| GAAGTCGGAGCAGGAGCGTC+GGG | 0.439105 | 8.1:-59353497 | MS.gene067266:CDS |
| ATGTCTCTTAATACTCCAAC+TGG | 0.441716 | 8.1:-59353298 | MS.gene067266:CDS |
| GCGTCGGGCTGCGATTATTC+GGG | 0.441988 | 8.1:-59353482 | MS.gene067266:CDS |
| CCAGGAAGATAAGTAACATT+AGG | 0.443017 | 8.1:+59353337 | None:intergenic |
| CCTACCATTGTTCAGAATCT+CGG | 0.444941 | 8.1:-59354491 | MS.gene067266:CDS |
| ATCTTTGGTACCAGAGATTG+AGG | 0.467443 | 8.1:+59354571 | None:intergenic |
| CACGTCGGACAAGGCTCTCC+CGG | 0.471995 | 8.1:+59353650 | None:intergenic |
| CTTCACCGATGGATTGGTCG+AGG | 0.478021 | 8.1:+59354666 | None:intergenic |
| CAGCGGTTGCAGCGGCGCCA+AGG | 0.480297 | 8.1:+59354756 | None:intergenic |
| GGACGGGGTTGATTGAACTT+AGG | 0.481276 | 8.1:-59353405 | MS.gene067266:CDS |
| GGCGCGTTGGCCACCGTCGA+CGG | 0.487014 | 8.1:+59354715 | None:intergenic |
| AACCCATGGGATGAGAAAAT+GGG | 0.496141 | 8.1:+59354640 | None:intergenic |
| TGTTGTGATGAAGTCGGAGC+AGG | 0.504236 | 8.1:-59353506 | MS.gene067266:CDS |
| GAGCCTTGTCCGACGTGCTA+AGG | 0.504975 | 8.1:-59353644 | MS.gene067266:CDS |
| ACACCTGTGGACGCTCTGTA+AGG | 0.510363 | 8.1:+59353683 | None:intergenic |
| ACAGGTGTCTGCACTTGTCC+GGG | 0.511177 | 8.1:-59353668 | MS.gene067266:CDS |
| GGGTTCCTTCACCGATGGAT+TGG | 0.513176 | 8.1:+59354660 | None:intergenic |
| GCGTGCTGTGGAGCAGAAGC+AGG | 0.514540 | 8.1:-59353560 | MS.gene067266:CDS |
| TAGGATGATTGAAGCTGCTA+GGG | 0.515427 | 8.1:-59353386 | MS.gene067266:CDS |
| GGCCACCGTCGACGGTGTAG+AGG | 0.515496 | 8.1:+59354723 | None:intergenic |
| GGTCGAGGATTCCGCGGAAA+CGG | 0.515882 | 8.1:+59354681 | None:intergenic |
| TAACATCGTTCTTGATGATG+TGG | 0.522591 | 8.1:-59353617 | MS.gene067266:CDS |
| AGCGGCGCCAAGGCCGAAAG+CGG | 0.527672 | 8.1:+59354766 | None:intergenic |
| CTCGACCAATCCATCGGTGA+AGG | 0.554173 | 8.1:-59354665 | MS.gene067266:CDS |
| TTAGGATGATTGAAGCTGCT+AGG | 0.554479 | 8.1:-59353387 | MS.gene067266:CDS |
| GGTCGAAGAGGACGGCGCGT+TGG | 0.554524 | 8.1:+59354702 | None:intergenic |
| ACGGGCGACGTTGGTTAGGA+AGG | 0.561469 | 8.1:+59354790 | None:intergenic |
| AATCCTTAGCACGTCGGACA+AGG | 0.567094 | 8.1:+59353641 | None:intergenic |
| TGAAGTCGGAGCAGGAGCGT+CGG | 0.572437 | 8.1:-59353498 | MS.gene067266:CDS |
| AAAATGGGTTCCTTCACCGA+TGG | 0.573182 | 8.1:+59354655 | None:intergenic |
| GCTGCGATTATTCGGGCTGA+AGG | 0.578854 | 8.1:-59353475 | MS.gene067266:CDS |
| GCTCCTTACAGAGCGTCCAC+AGG | 0.578894 | 8.1:-59353686 | MS.gene067266:CDS |
| AAAATTTGTTGTGATGAAGT+CGG | 0.579042 | 8.1:-59353512 | MS.gene067266:CDS |
| CCGAGATTCTGAACAATGGT+AGG | 0.580029 | 8.1:+59354491 | None:intergenic |
| GTCCTCTTCGACCGTTTCCG+CGG | 0.583762 | 8.1:-59354692 | MS.gene067266:CDS |
| AACAACAATCAACGACCAGT+TGG | 0.587712 | 8.1:+59353283 | None:intergenic |
| TGCTGTGGAGCAGAAGCAGG+TGG | 0.588155 | 8.1:-59353557 | MS.gene067266:CDS |
| GCGGAAACGGTCGAAGAGGA+CGG | 0.591383 | 8.1:+59354694 | None:intergenic |
| CAGAGATTGAGGAGAAAGTG+TGG | 0.595142 | 8.1:+59354582 | None:intergenic |
| TTAGGAAGGAGACTGCGGCT+TGG | 0.596955 | 8.1:+59354804 | None:intergenic |
| GAAAGCGGCACGGGCGACGT+TGG | 0.597200 | 8.1:+59354781 | None:intergenic |
| GGTGTTGACAGCGGTTGCAG+CGG | 0.597924 | 8.1:+59354748 | None:intergenic |
| GCCACCGTCGACGGTGTAGA+GGG | 0.600376 | 8.1:+59354724 | None:intergenic |
| AGAGATTGAGGAGAAAGTGT+GGG | 0.605645 | 8.1:+59354583 | None:intergenic |
| ATGATCATGTTATTTCCACC+AGG | 0.609015 | 8.1:+59353319 | None:intergenic |
| ACCTCCCTCTACACCGTCGA+CGG | 0.610203 | 8.1:-59354728 | MS.gene067266:CDS |
| AATGTTACTTATCTTCCTGG+TGG | 0.614739 | 8.1:-59353334 | MS.gene067266:CDS |
| TCCCTCTACACCGTCGACGG+TGG | 0.623772 | 8.1:-59354725 | MS.gene067266:CDS |
| GGAATCCTCGACCAATCCAT+CGG | 0.624287 | 8.1:-59354671 | MS.gene067266:CDS |
| TTCCGCGGAAACGGTCGAAG+AGG | 0.635954 | 8.1:+59354690 | None:intergenic |
| TGGTACCAAAGATCTTCAGA+TGG | 0.636368 | 8.1:-59354561 | MS.gene067266:CDS |
| CGGACAAGTGCAGACACCTG+TGG | 0.640946 | 8.1:+59353670 | None:intergenic |
| ACCGTCGACGGTGTAGAGGG+AGG | 0.656882 | 8.1:+59354727 | None:intergenic |
| TATCAGGACGAGAAAGAACA+CGG | 0.666832 | 8.1:+59354525 | None:intergenic |
| TGGATTGGTCGAGGATTCCG+CGG | 0.667712 | 8.1:+59354675 | None:intergenic |
| GTTGGTTAGGAAGGAGACTG+CGG | 0.671219 | 8.1:+59354799 | None:intergenic |
| GAGATTGAGGAGAAAGTGTG+GGG | 0.675394 | 8.1:+59354584 | None:intergenic |
| AAGCTGCTAGGGAAATTGCA+AGG | 0.676083 | 8.1:-59353375 | MS.gene067266:CDS |
| GTAGAGGGAGGTGTTGACAG+CGG | 0.702700 | 8.1:+59354739 | None:intergenic |
| TGGCTCAACAGGAAGCAGAG+AGG | 0.714990 | 8.1:-59353537 | MS.gene067266:CDS |
| TGTTAAAATCCTTAGCACGT+CGG | 0.733880 | 8.1:+59353635 | None:intergenic |
| GAGACCGAGATTCTGAACAA+TGG | 0.736610 | 8.1:+59354487 | None:intergenic |
| TGTTGTGGCTCAATTCAATG+CGG | 0.770458 | 8.1:-59353713 | MS.gene067266:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTGATAGAAGTATTTA+GGG | - | chr8.1:59353717-59353736 | MS.gene067266:CDS | 15.0% |
| !! | ACATATTCATTACATTATCA+AGG | + | chr8.1:59354330-59354349 | None:intergenic | 20.0% |
| !! | CATGAAAATTAATCTATTTG+GGG | - | chr8.1:59354144-59354163 | MS.gene067266:intron | 20.0% |
| !! | GCATGAAAATTAATCTATTT+GGG | - | chr8.1:59354143-59354162 | MS.gene067266:intron | 20.0% |
| !! | TGCATGAAAATTAATCTATT+TGG | - | chr8.1:59354142-59354161 | MS.gene067266:intron | 20.0% |
| !!! | GTATATTGATAGAAGTATTT+AGG | - | chr8.1:59353716-59353735 | MS.gene067266:CDS | 20.0% |
| ! | AACAATGGTAGGTAAATTAT+CGG | + | chr8.1:59353607-59353626 | None:intergenic | 25.0% |
| ! | AAGCCAATCTATATATTTCT+TGG | - | chr8.1:59354012-59354031 | MS.gene067266:intron | 25.0% |
| ! | ACACCAAGAAATATATAGAT+TGG | + | chr8.1:59354018-59354037 | None:intergenic | 25.0% |
| ! | TGCATGAGAATTAATCTATT+TGG | - | chr8.1:59354082-59354101 | MS.gene067266:intron | 25.0% |
| !! | ATTATAACATTACCGATTGA+AGG | + | chr8.1:59353666-59353685 | None:intergenic | 25.0% |
| !! | CTAACTTTTACATCTTTGAT+AGG | - | chr8.1:59354352-59354371 | MS.gene067266:intron | 25.0% |
| !! | GATTAATTTTCATGCAGTAA+CGG | + | chr8.1:59354138-59354157 | None:intergenic | 25.0% |
| !!! | AAAAAGTAGTTTTACACTGT+TGG | - | chr8.1:59354059-59354078 | MS.gene067266:intron | 25.0% |
| !!! | AAAATTTGTTGTGATGAAGT+CGG | - | chr8.1:59354594-59354613 | MS.gene067266:CDS | 25.0% |
| !!! | ATCTATTGTTGTGTTTTGAT+TGG | - | chr8.1:59354215-59354234 | MS.gene067266:intron | 25.0% |
| !!! | ATTGCTTTTGTATATGCTAT+AGG | - | chr8.1:59353858-59353877 | MS.gene067266:intron | 25.0% |
| AATAAGTTGTTTACCCAAAC+AGG | + | chr8.1:59353743-59353762 | None:intergenic | 30.0% | |
| GAAAAAGTTCTTCCTTCAAT+CGG | - | chr8.1:59353651-59353670 | MS.gene067266:CDS | 30.0% | |
| TTGATAGAATGAGTACATTG+AGG | - | chr8.1:59354275-59354294 | MS.gene067266:intron | 30.0% | |
| ! | CAGCTTATAACAATTTTCAC+AGG | + | chr8.1:59353934-59353953 | None:intergenic | 30.0% |
| ! | TTGTTATAAGCTGATTTCGT+AGG | - | chr8.1:59353941-59353960 | MS.gene067266:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr8.1:59353972-59353991 | None:intergenic | 30.0% |
| !! | GTTTTGATATCGAAGATGTA+AGG | + | chr8.1:59353498-59353517 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr8.1:59353971-59353990 | None:intergenic | 30.0% |
| !! | TCTATTTGGTGTGATTTGAT+TGG | - | chr8.1:59354096-59354115 | MS.gene067266:intron | 30.0% |
| ATGTCTCTTAATACTCCAAC+TGG | - | chr8.1:59354808-59354827 | MS.gene067266:CDS | 35.0% | |
| CCAGGAAGATAAGTAACATT+AGG | + | chr8.1:59354772-59354791 | None:intergenic | 35.0% | |
| GTAGGTAAATTATCGGTATC+AGG | + | chr8.1:59353600-59353619 | None:intergenic | 35.0% | |
| GTTAACCATCTGAAGATCTT+TGG | + | chr8.1:59353553-59353572 | None:intergenic | 35.0% | |
| TGTTAAAATCCTTAGCACGT+CGG | + | chr8.1:59354474-59354493 | None:intergenic | 35.0% | |
| ! | AATGTTACTTATCTTCCTGG+TGG | - | chr8.1:59354772-59354791 | MS.gene067266:CDS | 35.0% |
| ! | CCTAATGTTACTTATCTTCC+TGG | - | chr8.1:59354769-59354788 | MS.gene067266:CDS | 35.0% |
| ! | TTAATCTATTTGGGGTGACT+TGG | - | chr8.1:59354152-59354171 | MS.gene067266:intron | 35.0% |
| !! | ATGATCATGTTATTTCCACC+AGG | + | chr8.1:59354790-59354809 | None:intergenic | 35.0% |
| !! | TAACATCGTTCTTGATGATG+TGG | - | chr8.1:59354489-59354508 | MS.gene067266:CDS | 35.0% |
| AACCCATGGGATGAGAAAAT+GGG | + | chr8.1:59353469-59353488 | None:intergenic | 40.0% | |
| ATCTTTGGTACCAGAGATTG+AGG | + | chr8.1:59353538-59353557 | None:intergenic | 40.0% | |
| CCTACCATTGTTCAGAATCT+CGG | - | chr8.1:59353615-59353634 | MS.gene067266:CDS | 40.0% | |
| GCTATCACGCATTTGTCTTA+TGG | - | chr8.1:59354511-59354530 | MS.gene067266:CDS | 40.0% | |
| TAGGATGATTGAAGCTGCTA+GGG | - | chr8.1:59354720-59354739 | MS.gene067266:CDS | 40.0% | |
| TATCAGGACGAGAAAGAACA+CGG | + | chr8.1:59353584-59353603 | None:intergenic | 40.0% | |
| TGGTACCAAAGATCTTCAGA+TGG | - | chr8.1:59353545-59353564 | MS.gene067266:CDS | 40.0% | |
| TGTTGTGGCTCAATTCAATG+CGG | - | chr8.1:59354393-59354412 | MS.gene067266:intron | 40.0% | |
| TTAGGATGATTGAAGCTGCT+AGG | - | chr8.1:59354719-59354738 | MS.gene067266:CDS | 40.0% | |
| ! | AACCCATTTTCTCATCCCAT+GGG | - | chr8.1:59353464-59353483 | MS.gene067266:CDS | 40.0% |
| ! | AGAGATTGAGGAGAAAGTGT+GGG | + | chr8.1:59353526-59353545 | None:intergenic | 40.0% |
| ! | ATGTAAGGCTTTTGAACCCA+TGG | + | chr8.1:59353483-59353502 | None:intergenic | 40.0% |
| ! | GAAGTATTTAGGGCCTGTTT+GGG | - | chr8.1:59353727-59353746 | MS.gene067266:CDS | 40.0% |
| ! | TGTAAGGCTTTTGAACCCAT+GGG | + | chr8.1:59353482-59353501 | None:intergenic | 40.0% |
| !! | AGAAGTATTTAGGGCCTGTT+TGG | - | chr8.1:59353726-59353745 | MS.gene067266:CDS | 40.0% |
| !!! | CGAAGTTTTGAAAGCTGTTG+TGG | - | chr8.1:59354378-59354397 | MS.gene067266:intron | 40.0% |
| AAGCTGCTAGGGAAATTGCA+AGG | - | chr8.1:59354731-59354750 | MS.gene067266:CDS | 45.0% | |
| CACACTTTCTCCTCAATCTC+TGG | - | chr8.1:59353525-59353544 | MS.gene067266:CDS | 45.0% | |
| CAGAGATTGAGGAGAAAGTG+TGG | + | chr8.1:59353527-59353546 | None:intergenic | 45.0% | |
| CCGAGATTCTGAACAATGGT+AGG | + | chr8.1:59353618-59353637 | None:intergenic | 45.0% | |
| GAACCCATGGGATGAGAAAA+TGG | + | chr8.1:59353470-59353489 | None:intergenic | 45.0% | |
| GAGAAAGAACACGGAGAGTT+AGG | + | chr8.1:59353575-59353594 | None:intergenic | 45.0% | |
| GAGACCGAGATTCTGAACAA+TGG | + | chr8.1:59353622-59353641 | None:intergenic | 45.0% | |
| ! | AAAATGGGTTCCTTCACCGA+TGG | + | chr8.1:59353454-59353473 | None:intergenic | 45.0% |
| ! | GAACCCATTTTCTCATCCCA+TGG | - | chr8.1:59353463-59353482 | MS.gene067266:CDS | 45.0% |
| ! | GAGATTGAGGAGAAAGTGTG+GGG | + | chr8.1:59353525-59353544 | None:intergenic | 45.0% |
| !! | TCTATTTGGGGTGACTTGGT+TGG | - | chr8.1:59354156-59354175 | MS.gene067266:intron | 45.0% |
| !!! | CTGATGCTACTGCTGCTTTT+GGG | - | chr8.1:59354680-59354699 | MS.gene067266:CDS | 45.0% |
| !!! | TCTGATGCTACTGCTGCTTT+TGG | - | chr8.1:59354679-59354698 | MS.gene067266:CDS | 45.0% |
| AATCCTTAGCACGTCGGACA+AGG | + | chr8.1:59354468-59354487 | None:intergenic | 50.0% | |
| GGAATCCTCGACCAATCCAT+CGG | - | chr8.1:59353435-59353454 | MS.gene067266:CDS | 50.0% | |
| GTTGGTTAGGAAGGAGACTG+CGG | + | chr8.1:59353310-59353329 | None:intergenic | 50.0% | |
| TGTTGTGATGAAGTCGGAGC+AGG | - | chr8.1:59354600-59354619 | MS.gene067266:CDS | 50.0% | |
| ! | GGACGGGGTTGATTGAACTT+AGG | - | chr8.1:59354701-59354720 | MS.gene067266:CDS | 50.0% |
| ! | TGCTGAATTTTCGCGTGCTG+TGG | - | chr8.1:59354534-59354553 | MS.gene067266:CDS | 50.0% |
| !!! | TGCTACTGCTGCTTTTGGGA+CGG | - | chr8.1:59354684-59354703 | MS.gene067266:CDS | 50.0% |
| ACACCTGTGGACGCTCTGTA+AGG | + | chr8.1:59354426-59354445 | None:intergenic | 55.0% | |
| ACAGGTGTCTGCACTTGTCC+GGG | - | chr8.1:59354438-59354457 | MS.gene067266:intron | 55.0% | |
| CACAGGTGTCTGCACTTGTC+CGG | - | chr8.1:59354437-59354456 | MS.gene067266:intron | 55.0% | |
| CTCGACCAATCCATCGGTGA+AGG | - | chr8.1:59353441-59353460 | MS.gene067266:CDS | 55.0% | |
| GCTGCGATTATTCGGGCTGA+AGG | - | chr8.1:59354631-59354650 | MS.gene067266:CDS | 55.0% | |
| GGGTTCCTTCACCGATGGAT+TGG | + | chr8.1:59353449-59353468 | None:intergenic | 55.0% | |
| TGGCTCAACAGGAAGCAGAG+AGG | - | chr8.1:59354569-59354588 | MS.gene067266:CDS | 55.0% | |
| TTAGGAAGGAGACTGCGGCT+TGG | + | chr8.1:59353305-59353324 | None:intergenic | 55.0% | |
| ! | AGCGTCGGGCTGCGATTATT+CGG | - | chr8.1:59354623-59354642 | MS.gene067266:CDS | 55.0% |
| !! | CTTCACCGATGGATTGGTCG+AGG | + | chr8.1:59353443-59353462 | None:intergenic | 55.0% |
| !! | GTAGAGGGAGGTGTTGACAG+CGG | + | chr8.1:59353370-59353389 | None:intergenic | 55.0% |
| !! | TGGATTGGTCGAGGATTCCG+CGG | + | chr8.1:59353434-59353453 | None:intergenic | 55.0% |
| !!! | CTACTGCTGCTTTTGGGACG+GGG | - | chr8.1:59354686-59354705 | MS.gene067266:CDS | 55.0% |
| !!! | GCTACTGCTGCTTTTGGGAC+GGG | - | chr8.1:59354685-59354704 | MS.gene067266:CDS | 55.0% |
| ACCTCCCTCTACACCGTCGA+CGG | - | chr8.1:59353378-59353397 | MS.gene067266:CDS | 60.0% | |
| CGGACAAGTGCAGACACCTG+TGG | + | chr8.1:59354439-59354458 | None:intergenic | 60.0% | |
| GCAGAAGCAGGTGGCTCAAC+AGG | - | chr8.1:59354558-59354577 | MS.gene067266:CDS | 60.0% | |
| GCGGAAACGGTCGAAGAGGA+CGG | + | chr8.1:59353415-59353434 | None:intergenic | 60.0% | |
| GCGTCGGGCTGCGATTATTC+GGG | - | chr8.1:59354624-59354643 | MS.gene067266:CDS | 60.0% | |
| GGTCGAGGATTCCGCGGAAA+CGG | + | chr8.1:59353428-59353447 | None:intergenic | 60.0% | |
| GTCCTCTTCGACCGTTTCCG+CGG | - | chr8.1:59353414-59353433 | MS.gene067266:CDS | 60.0% | |
| TGCTGTGGAGCAGAAGCAGG+TGG | - | chr8.1:59354549-59354568 | MS.gene067266:CDS | 60.0% | |
| TTCCGCGGAAACGGTCGAAG+AGG | + | chr8.1:59353419-59353438 | None:intergenic | 60.0% | |
| ! | ACGGGCGACGTTGGTTAGGA+AGG | + | chr8.1:59353319-59353338 | None:intergenic | 60.0% |
| ! | GAGCCTTGTCCGACGTGCTA+AGG | - | chr8.1:59354462-59354481 | MS.gene067266:CDS | 60.0% |
| ! | GCTCCTTACAGAGCGTCCAC+AGG | - | chr8.1:59354420-59354439 | MS.gene067266:intron | 60.0% |
| ! | TGAAGTCGGAGCAGGAGCGT+CGG | - | chr8.1:59354608-59354627 | MS.gene067266:CDS | 60.0% |
| !! | GGTGTTGACAGCGGTTGCAG+CGG | + | chr8.1:59353361-59353380 | None:intergenic | 60.0% |
| ACCGTCGACGGTGTAGAGGG+AGG | + | chr8.1:59353382-59353401 | None:intergenic | 65.0% | |
| CACGTCGGACAAGGCTCTCC+CGG | + | chr8.1:59354459-59354478 | None:intergenic | 65.0% | |
| GCCACCGTCGACGGTGTAGA+GGG | + | chr8.1:59353385-59353404 | None:intergenic | 65.0% | |
| GCGTGCTGTGGAGCAGAAGC+AGG | - | chr8.1:59354546-59354565 | MS.gene067266:CDS | 65.0% | |
| TCCCTCTACACCGTCGACGG+TGG | - | chr8.1:59353381-59353400 | MS.gene067266:CDS | 65.0% | |
| !! | AACGTCGCCCGTGCCGCTTT+CGG | - | chr8.1:59353327-59353346 | MS.gene067266:CDS | 65.0% |
| !! | GAAGTCGGAGCAGGAGCGTC+GGG | - | chr8.1:59354609-59354628 | MS.gene067266:CDS | 65.0% |
| AGCGGCGCCAAGGCCGAAAG+CGG | + | chr8.1:59353343-59353362 | None:intergenic | 70.0% | |
| CGCCAAGGCCGAAAGCGGCA+CGG | + | chr8.1:59353338-59353357 | None:intergenic | 70.0% | |
| GAAAGCGGCACGGGCGACGT+TGG | + | chr8.1:59353328-59353347 | None:intergenic | 70.0% | |
| GCCAAGGCCGAAAGCGGCAC+GGG | + | chr8.1:59353337-59353356 | None:intergenic | 70.0% | |
| GGCCACCGTCGACGGTGTAG+AGG | + | chr8.1:59353386-59353405 | None:intergenic | 70.0% | |
| GGTCGAAGAGGACGGCGCGT+TGG | + | chr8.1:59353407-59353426 | None:intergenic | 70.0% | |
| ! | CGGCACGGGCGACGTTGGTT+AGG | + | chr8.1:59353323-59353342 | None:intergenic | 70.0% |
| CAGCGGTTGCAGCGGCGCCA+AGG | + | chr8.1:59353353-59353372 | None:intergenic | 75.0% | |
| ! | GGCGCGTTGGCCACCGTCGA+CGG | + | chr8.1:59353394-59353413 | None:intergenic | 75.0% |
| !! | GCCCGTGCCGCTTTCGGCCT+TGG | - | chr8.1:59353333-59353352 | MS.gene067266:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59353291 | 59354837 | 59353291 | ID=MS.gene067266 |
| chr8.1 | mRNA | 59353291 | 59354837 | 59353291 | ID=MS.gene067266.t1;Parent=MS.gene067266 |
| chr8.1 | exon | 59354456 | 59354837 | 59354456 | ID=MS.gene067266.t1.exon1;Parent=MS.gene067266.t1 |
| chr8.1 | CDS | 59354456 | 59354837 | 59354456 | ID=cds.MS.gene067266.t1;Parent=MS.gene067266.t1 |
| chr8.1 | exon | 59353291 | 59353754 | 59353291 | ID=MS.gene067266.t1.exon2;Parent=MS.gene067266.t1 |
| chr8.1 | CDS | 59353291 | 59353754 | 59353291 | ID=cds.MS.gene067266.t1;Parent=MS.gene067266.t1 |
| Gene Sequence |
| Protein sequence |
