Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066925.t1 | XP_003628253.2 | 90.7 | 281 | 26 | 0 | 1 | 281 | 1 | 281 | 1.70E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066925.t1 | O04331 | 75.7 | 276 | 67 | 0 | 1 | 276 | 1 | 276 | 5.5e-110 | 398.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066925.t1 | G7L8K5 | 90.7 | 281 | 26 | 0 | 1 | 281 | 1 | 281 | 1.3e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066925 | MS.gene028857 | PPI |
| MS.gene92318 | MS.gene066925 | PPI |
| MS.gene78840 | MS.gene066925 | PPI |
| MS.gene09764 | MS.gene066925 | PPI |
| MS.gene000128 | MS.gene066925 | PPI |
| MS.gene067266 | MS.gene066925 | PPI |
| MS.gene99648 | MS.gene066925 | PPI |
| MS.gene066925 | MS.gene016292 | PPI |
| MS.gene066925 | MS.gene063809 | PPI |
| MS.gene59883 | MS.gene066925 | PPI |
| MS.gene56214 | MS.gene066925 | PPI |
| MS.gene80094 | MS.gene066925 | PPI |
| MS.gene88440 | MS.gene066925 | PPI |
| MS.gene016292 | MS.gene066925 | PPI |
| MS.gene014181 | MS.gene066925 | PPI |
| MS.gene055768 | MS.gene066925 | PPI |
| MS.gene009411 | MS.gene066925 | PPI |
| MS.gene61084 | MS.gene066925 | PPI |
| MS.gene68716 | MS.gene066925 | PPI |
| MS.gene31416 | MS.gene066925 | PPI |
| MS.gene043467 | MS.gene066925 | PPI |
| MS.gene066925 | MS.gene56214 | PPI |
| MS.gene91416 | MS.gene066925 | PPI |
| MS.gene058374 | MS.gene066925 | PPI |
| MS.gene066925 | MS.gene024895 | PPI |
| MS.gene016544 | MS.gene066925 | PPI |
| MS.gene066925 | MS.gene015412 | PPI |
| MS.gene68113 | MS.gene066925 | PPI |
| MS.gene59884 | MS.gene066925 | PPI |
| MS.gene063067 | MS.gene066925 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066925.t1 | MTR_8g046300 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 560 |
| MS.gene066925.t1 | MTR_3g008250 | 88.406 | 276 | 31 | 1 | 1 | 276 | 1 | 275 | 0.0 | 503 |
| MS.gene066925.t1 | MTR_2g090760 | 54.000 | 250 | 112 | 2 | 20 | 269 | 26 | 272 | 4.67e-92 | 274 |
| MS.gene066925.t1 | MTR_4g078200 | 53.279 | 244 | 113 | 1 | 22 | 265 | 31 | 273 | 4.61e-89 | 267 |
| MS.gene066925.t1 | MTR_4g078200 | 53.125 | 224 | 103 | 2 | 57 | 280 | 5 | 226 | 4.56e-79 | 239 |
| MS.gene066925.t1 | MTR_5g093030 | 53.073 | 179 | 83 | 1 | 1 | 179 | 1 | 178 | 3.59e-59 | 187 |
| MS.gene066925.t1 | MTR_5g093040 | 56.780 | 118 | 41 | 1 | 1 | 118 | 1 | 108 | 8.03e-40 | 134 |
| MS.gene066925.t1 | MTR_6g004320 | 55.224 | 134 | 22 | 1 | 92 | 225 | 1 | 96 | 2.01e-38 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066925.t1 | AT5G40770 | 82.246 | 276 | 49 | 0 | 1 | 276 | 1 | 276 | 5.84e-172 | 476 |
| MS.gene066925.t1 | AT3G27280 | 79.348 | 276 | 57 | 0 | 1 | 276 | 1 | 276 | 1.43e-166 | 462 |
| MS.gene066925.t1 | AT3G27280 | 79.348 | 276 | 57 | 0 | 1 | 276 | 1 | 276 | 1.43e-166 | 462 |
| MS.gene066925.t1 | AT5G14300 | 64.683 | 252 | 63 | 1 | 28 | 279 | 20 | 245 | 1.79e-116 | 335 |
| MS.gene066925.t1 | AT4G28510 | 55.128 | 234 | 104 | 1 | 31 | 264 | 35 | 267 | 1.30e-90 | 270 |
| MS.gene066925.t1 | AT1G03860 | 53.909 | 243 | 111 | 1 | 22 | 264 | 26 | 267 | 1.95e-90 | 270 |
| MS.gene066925.t1 | AT1G03860 | 53.909 | 243 | 111 | 1 | 22 | 264 | 26 | 267 | 1.95e-90 | 270 |
| MS.gene066925.t1 | AT5G44140 | 51.793 | 251 | 120 | 1 | 22 | 272 | 26 | 275 | 1.52e-87 | 262 |
| MS.gene066925.t1 | AT2G20530 | 51.852 | 243 | 116 | 1 | 22 | 264 | 24 | 265 | 3.99e-87 | 261 |
| MS.gene066925.t1 | AT2G20530 | 51.852 | 243 | 116 | 1 | 22 | 264 | 24 | 265 | 3.99e-87 | 261 |
| MS.gene066925.t1 | AT1G03860 | 54.187 | 203 | 92 | 1 | 62 | 264 | 1 | 202 | 1.01e-73 | 225 |
Find 74 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCTACTGCTGCTTT+TGG | 0.196530 | 8.4:-55006324 | MS.gene066925:CDS |
| GAACCCATGGGATGAGAAAA+TGG | 0.212561 | 8.4:+55007502 | None:intergenic |
| GCCCGTGCCGCTTTCGGCCT+CGG | 0.215116 | 8.4:-55007636 | MS.gene066925:CDS |
| AGCGTCGGGCTGCGATTATT+CGG | 0.270244 | 8.4:-55006380 | MS.gene066925:CDS |
| GTTAACCATCTGAAGATCTT+TGG | 0.292822 | 8.4:+55007419 | None:intergenic |
| CCTAATGTTACTTATCTTCC+TGG | 0.321773 | 8.4:-55006234 | MS.gene066925:CDS |
| GCTATCACGCATTTGTCTTA+TGG | 0.335777 | 8.4:-55006492 | MS.gene066925:CDS |
| CACAGGTGTCTGCACTTGTC+CGG | 0.350252 | 8.4:-55006566 | MS.gene066925:CDS |
| GCAGAAGCAGGTGGCTCAAC+AGG | 0.352028 | 8.4:-55006445 | MS.gene066925:CDS |
| GAGAAAGAAGACGGAGAGTT+AGG | 0.356919 | 8.4:+55007397 | None:intergenic |
| GTAGGTAAATTATCGGTATC+AGG | 0.379879 | 8.4:+55007372 | None:intergenic |
| AACGTCGCCCGTGCCGCTTT+CGG | 0.381810 | 8.4:-55007642 | MS.gene066925:CDS |
| CGGCACGGGCGACGTTGGTT+AGG | 0.388391 | 8.4:+55007649 | None:intergenic |
| CACACTTTCTCTTCAATCTC+TGG | 0.403143 | 8.4:-55007444 | MS.gene066925:CDS |
| GCCGAGGCCGAAAGCGGCAC+GGG | 0.407599 | 8.4:+55007635 | None:intergenic |
| AACAATAGTAGGTAAATTAT+CGG | 0.416764 | 8.4:+55007365 | None:intergenic |
| CGCCGAGGCCGAAAGCGGCA+CGG | 0.426015 | 8.4:+55007634 | None:intergenic |
| ATTATAACATTACCGATTGA+AGG | 0.429304 | 8.4:+55007306 | None:intergenic |
| GAAGTCGGAGCAGGAGCGTC+GGG | 0.439105 | 8.4:-55006394 | MS.gene066925:CDS |
| ATGTCTCTTAATACTCCAAC+TGG | 0.441716 | 8.4:-55006195 | MS.gene066925:CDS |
| GCGTCGGGCTGCGATTATTC+GGG | 0.441988 | 8.4:-55006379 | MS.gene066925:CDS |
| CCAGGAAGATAAGTAACATT+AGG | 0.443017 | 8.4:+55006234 | None:intergenic |
| CCTACTATTGTTCAGAATCT+CGG | 0.443372 | 8.4:-55007354 | MS.gene066925:CDS |
| CCGAGATTCTGAACAATAGT+AGG | 0.460995 | 8.4:+55007354 | None:intergenic |
| CACGTCGGACAAGGCTCTCC+CGG | 0.471995 | 8.4:+55006547 | None:intergenic |
| CTTCACCGATGGATTGGTCG+AGG | 0.478021 | 8.4:+55007529 | None:intergenic |
| GGACGGGGTTGATTGAACTT+AGG | 0.481276 | 8.4:-55006302 | MS.gene066925:CDS |
| GGCGCGTTGGCCACCGTCGA+CGG | 0.487014 | 8.4:+55007578 | None:intergenic |
| AACCCATGGGATGAGAAAAT+GGG | 0.496141 | 8.4:+55007503 | None:intergenic |
| TGTTGTGATGAAGTCGGAGC+AGG | 0.504236 | 8.4:-55006403 | MS.gene066925:CDS |
| GAGCCTTGTCCGACGTGCTA+AGG | 0.504975 | 8.4:-55006541 | MS.gene066925:CDS |
| ACACCTGTGGACGCTCTGTA+AGG | 0.510363 | 8.4:+55006580 | None:intergenic |
| ACAGGTGTCTGCACTTGTCC+GGG | 0.511177 | 8.4:-55006565 | MS.gene066925:CDS |
| GGGTTCCTTCACCGATGGAT+TGG | 0.513176 | 8.4:+55007523 | None:intergenic |
| GCGTGCTGTGGAGCAGAAGC+AGG | 0.514540 | 8.4:-55006457 | MS.gene066925:CDS |
| TAGGATGATTGAAGCTGCTA+GGG | 0.515427 | 8.4:-55006283 | MS.gene066925:CDS |
| GGCCACCGTCGACGGTGTAG+AGG | 0.515496 | 8.4:+55007586 | None:intergenic |
| TAACATCGTTCTTGATGATG+TGG | 0.522591 | 8.4:-55006514 | MS.gene066925:CDS |
| GGTCGAGGATTCCGCGAAAA+CGG | 0.524148 | 8.4:+55007544 | None:intergenic |
| AGCAGCGCCGAGGCCGAAAG+CGG | 0.535554 | 8.4:+55007629 | None:intergenic |
| CTCGACCAATCCATCGGTGA+AGG | 0.554173 | 8.4:-55007528 | MS.gene066925:CDS |
| TTAGGATGATTGAAGCTGCT+AGG | 0.554479 | 8.4:-55006284 | MS.gene066925:CDS |
| GGTCGAAGAGGACGGCGCGT+TGG | 0.554524 | 8.4:+55007565 | None:intergenic |
| ACGGGCGACGTTGGTTAGGA+AGG | 0.561469 | 8.4:+55007653 | None:intergenic |
| AATCCTTAGCACGTCGGACA+AGG | 0.567094 | 8.4:+55006538 | None:intergenic |
| TGAAGTCGGAGCAGGAGCGT+CGG | 0.572437 | 8.4:-55006395 | MS.gene066925:CDS |
| AAAATGGGTTCCTTCACCGA+TGG | 0.573182 | 8.4:+55007518 | None:intergenic |
| GCTGCGATTATTCGGGCTGA+AGG | 0.578854 | 8.4:-55006372 | MS.gene066925:CDS |
| GCTCCTTACAGAGCGTCCAC+AGG | 0.578894 | 8.4:-55006583 | MS.gene066925:CDS |
| AAAATTTGTTGTGATGAAGT+CGG | 0.579042 | 8.4:-55006409 | MS.gene066925:CDS |
| GCGAAAACGGTCGAAGAGGA+CGG | 0.585122 | 8.4:+55007557 | None:intergenic |
| AACAACAATCAACGACCAGT+TGG | 0.587712 | 8.4:+55006180 | None:intergenic |
| TGCTGTGGAGCAGAAGCAGG+TGG | 0.588155 | 8.4:-55006454 | MS.gene066925:CDS |
| TTAGGAAGGAGACTGCGGCT+TGG | 0.596955 | 8.4:+55007667 | None:intergenic |
| GAAAGCGGCACGGGCGACGT+TGG | 0.597200 | 8.4:+55007644 | None:intergenic |
| GCCACCGTCGACGGTGTAGA+GGG | 0.600376 | 8.4:+55007587 | None:intergenic |
| ATGATCATGTTATTTCCACC+AGG | 0.609015 | 8.4:+55006216 | None:intergenic |
| ACCTCCCTCTACACCGTCGA+CGG | 0.610203 | 8.4:-55007591 | MS.gene066925:CDS |
| CAGCGGTTGCAGCAGCGCCG+AGG | 0.610906 | 8.4:+55007619 | None:intergenic |
| AATGTTACTTATCTTCCTGG+TGG | 0.614739 | 8.4:-55006231 | MS.gene066925:CDS |
| TCCCTCTACACCGTCGACGG+TGG | 0.623772 | 8.4:-55007588 | MS.gene066925:CDS |
| GGAATCCTCGACCAATCCAT+CGG | 0.624287 | 8.4:-55007534 | MS.gene066925:CDS |
| TATCAGGACGAGAAAGAAGA+CGG | 0.632581 | 8.4:+55007388 | None:intergenic |
| TTCCGCGAAAACGGTCGAAG+AGG | 0.635954 | 8.4:+55007553 | None:intergenic |
| TGGTACCAAAGATCTTCAGA+TGG | 0.636368 | 8.4:-55007424 | MS.gene066925:CDS |
| CGGACAAGTGCAGACACCTG+TGG | 0.640946 | 8.4:+55006567 | None:intergenic |
| GAGATTGAAGAGAAAGTGTG+TGG | 0.642286 | 8.4:+55007447 | None:intergenic |
| ACCGTCGACGGTGTAGAGGG+AGG | 0.656882 | 8.4:+55007590 | None:intergenic |
| GTTGGTTAGGAAGGAGACTG+CGG | 0.671219 | 8.4:+55007662 | None:intergenic |
| AAGCTGCTAGGGAAATTGCA+AGG | 0.676083 | 8.4:-55006272 | MS.gene066925:CDS |
| GTAGAGGGAGGTGTTGACAG+CGG | 0.702700 | 8.4:+55007602 | None:intergenic |
| TGGCTCAACAGGAAGCAGAG+AGG | 0.714990 | 8.4:-55006434 | MS.gene066925:CDS |
| TGTTAAAATCCTTAGCACGT+CGG | 0.733880 | 8.4:+55006532 | None:intergenic |
| TGTTGTGGCACAATTCAATG+CGG | 0.772941 | 8.4:-55006610 | MS.gene066925:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATAGTAGGTAAATTAT+CGG | + | chr8.4:55006504-55006523 | None:intergenic | 20.0% |
| !! | ACATATTCATTACATTATCA+AGG | + | chr8.4:55007193-55007212 | None:intergenic | 20.0% |
| !! | CATGAAAATTAATCTATTTG+GGG | - | chr8.4:55007007-55007026 | MS.gene066925:intron | 20.0% |
| !! | GCATGAAAATTAATCTATTT+GGG | - | chr8.4:55007006-55007025 | MS.gene066925:intron | 20.0% |
| !! | TGCATGAAAATTAATCTATT+TGG | - | chr8.4:55007005-55007024 | MS.gene066925:intron | 20.0% |
| !!! | ACTGTTTTTGTAAACTATAT+TGG | - | chr8.4:55006743-55006762 | MS.gene066925:intron | 20.0% |
| ! | AAGCCAATCTATATATTTCT+TGG | - | chr8.4:55006875-55006894 | MS.gene066925:intron | 25.0% |
| ! | ACACCAAGAAATATATAGAT+TGG | + | chr8.4:55006881-55006900 | None:intergenic | 25.0% |
| ! | TGCATGAGAATTAATCTATT+TGG | - | chr8.4:55006945-55006964 | MS.gene066925:intron | 25.0% |
| !! | ATTATAACATTACCGATTGA+AGG | + | chr8.4:55006563-55006582 | None:intergenic | 25.0% |
| !! | CTAACTTTTACATCTTTGAT+AGG | - | chr8.4:55007215-55007234 | MS.gene066925:intron | 25.0% |
| !! | GATTAATTTTCATGCAGTAA+CGG | + | chr8.4:55007001-55007020 | None:intergenic | 25.0% |
| !!! | AAAAAGTAGTTTTACACTGT+TGG | - | chr8.4:55006922-55006941 | MS.gene066925:intron | 25.0% |
| !!! | AAAATTTGTTGTGATGAAGT+CGG | - | chr8.4:55007457-55007476 | MS.gene066925:CDS | 25.0% |
| !!! | ATCTATTGTTGTGTTTTGAT+TGG | - | chr8.4:55007078-55007097 | MS.gene066925:intron | 25.0% |
| GAAAAAGTTCTTCCTTCAAT+CGG | - | chr8.4:55006548-55006567 | MS.gene066925:CDS | 30.0% | |
| TTGATAGAATGAGTACATTG+AGG | - | chr8.4:55007138-55007157 | MS.gene066925:intron | 30.0% | |
| ! | CAGCTTATAACAATTTTCAC+AGG | + | chr8.4:55006797-55006816 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr8.4:55006835-55006854 | None:intergenic | 30.0% |
| !! | GTTTTGATATCGAAGATGTA+AGG | + | chr8.4:55006395-55006414 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr8.4:55006834-55006853 | None:intergenic | 30.0% |
| !! | TCTATTTGGTGTGATTTGAT+TGG | - | chr8.4:55006959-55006978 | MS.gene066925:intron | 30.0% |
| ATGTCTCTTAATACTCCAAC+TGG | - | chr8.4:55007671-55007690 | MS.gene066925:CDS | 35.0% | |
| CCAGGAAGATAAGTAACATT+AGG | + | chr8.4:55007635-55007654 | None:intergenic | 35.0% | |
| CCTACTATTGTTCAGAATCT+CGG | - | chr8.4:55006512-55006531 | MS.gene066925:CDS | 35.0% | |
| GTAGGTAAATTATCGGTATC+AGG | + | chr8.4:55006497-55006516 | None:intergenic | 35.0% | |
| GTTAACCATCTGAAGATCTT+TGG | + | chr8.4:55006450-55006469 | None:intergenic | 35.0% | |
| TGTTAAAATCCTTAGCACGT+CGG | + | chr8.4:55007337-55007356 | None:intergenic | 35.0% | |
| ! | AATGTTACTTATCTTCCTGG+TGG | - | chr8.4:55007635-55007654 | MS.gene066925:CDS | 35.0% |
| ! | CCTAATGTTACTTATCTTCC+TGG | - | chr8.4:55007632-55007651 | MS.gene066925:CDS | 35.0% |
| ! | TTAATCTATTTGGGGTGACT+TGG | - | chr8.4:55007015-55007034 | MS.gene066925:intron | 35.0% |
| !! | ATGATCATGTTATTTCCACC+AGG | + | chr8.4:55007653-55007672 | None:intergenic | 35.0% |
| !! | CATATTGATAGAAGCGTCTA+GGG | - | chr8.4:55006614-55006633 | MS.gene066925:CDS | 35.0% |
| !! | TAACATCGTTCTTGATGATG+TGG | - | chr8.4:55007352-55007371 | MS.gene066925:CDS | 35.0% |
| AACCCATGGGATGAGAAAAT+GGG | + | chr8.4:55006366-55006385 | None:intergenic | 40.0% | |
| CACACTTTCTCTTCAATCTC+TGG | - | chr8.4:55006422-55006441 | MS.gene066925:CDS | 40.0% | |
| CCGAGATTCTGAACAATAGT+AGG | + | chr8.4:55006515-55006534 | None:intergenic | 40.0% | |
| GCTATCACGCATTTGTCTTA+TGG | - | chr8.4:55007374-55007393 | MS.gene066925:CDS | 40.0% | |
| TAGGATGATTGAAGCTGCTA+GGG | - | chr8.4:55007583-55007602 | MS.gene066925:CDS | 40.0% | |
| TATCAGGACGAGAAAGAAGA+CGG | + | chr8.4:55006481-55006500 | None:intergenic | 40.0% | |
| TGGTACCAAAGATCTTCAGA+TGG | - | chr8.4:55006442-55006461 | MS.gene066925:CDS | 40.0% | |
| TGTTGTGGCACAATTCAATG+CGG | - | chr8.4:55007256-55007275 | MS.gene066925:intron | 40.0% | |
| TTAGGATGATTGAAGCTGCT+AGG | - | chr8.4:55007582-55007601 | MS.gene066925:CDS | 40.0% | |
| ! | AACCCATTTTCTCATCCCAT+GGG | - | chr8.4:55006361-55006380 | MS.gene066925:CDS | 40.0% |
| ! | ATGTAAGGCTTTTGAACCCA+TGG | + | chr8.4:55006380-55006399 | None:intergenic | 40.0% |
| ! | GAGATTGAAGAGAAAGTGTG+TGG | + | chr8.4:55006422-55006441 | None:intergenic | 40.0% |
| ! | TGTAAGGCTTTTGAACCCAT+GGG | + | chr8.4:55006379-55006398 | None:intergenic | 40.0% |
| !! | GCATATTGATAGAAGCGTCT+AGG | - | chr8.4:55006613-55006632 | MS.gene066925:CDS | 40.0% |
| !!! | CGAAGTTTTGAAAGCTGTTG+TGG | - | chr8.4:55007241-55007260 | MS.gene066925:intron | 40.0% |
| AAGCTGCTAGGGAAATTGCA+AGG | - | chr8.4:55007594-55007613 | MS.gene066925:CDS | 45.0% | |
| GAACCCATGGGATGAGAAAA+TGG | + | chr8.4:55006367-55006386 | None:intergenic | 45.0% | |
| GAGAAAGAAGACGGAGAGTT+AGG | + | chr8.4:55006472-55006491 | None:intergenic | 45.0% | |
| ! | AAAATGGGTTCCTTCACCGA+TGG | + | chr8.4:55006351-55006370 | None:intergenic | 45.0% |
| ! | GAACCCATTTTCTCATCCCA+TGG | - | chr8.4:55006360-55006379 | MS.gene066925:CDS | 45.0% |
| !! | TCTATTTGGGGTGACTTGGT+TGG | - | chr8.4:55007019-55007038 | MS.gene066925:intron | 45.0% |
| !!! | CTGATGCTACTGCTGCTTTT+GGG | - | chr8.4:55007543-55007562 | MS.gene066925:CDS | 45.0% |
| !!! | TCTGATGCTACTGCTGCTTT+TGG | - | chr8.4:55007542-55007561 | MS.gene066925:CDS | 45.0% |
| AATCCTTAGCACGTCGGACA+AGG | + | chr8.4:55007331-55007350 | None:intergenic | 50.0% | |
| GGAATCCTCGACCAATCCAT+CGG | - | chr8.4:55006332-55006351 | MS.gene066925:CDS | 50.0% | |
| GTTGGTTAGGAAGGAGACTG+CGG | + | chr8.4:55006207-55006226 | None:intergenic | 50.0% | |
| TGTTGTGATGAAGTCGGAGC+AGG | - | chr8.4:55007463-55007482 | MS.gene066925:CDS | 50.0% | |
| ! | GGACGGGGTTGATTGAACTT+AGG | - | chr8.4:55007564-55007583 | MS.gene066925:CDS | 50.0% |
| ! | TGCTGAATTTTCGCGTGCTG+TGG | - | chr8.4:55007397-55007416 | MS.gene066925:CDS | 50.0% |
| !! | AGAAGCGTCTAGGGTCTGTT+TGG | - | chr8.4:55006623-55006642 | MS.gene066925:CDS | 50.0% |
| !!! | TGCTACTGCTGCTTTTGGGA+CGG | - | chr8.4:55007547-55007566 | MS.gene066925:CDS | 50.0% |
| ACACCTGTGGACGCTCTGTA+AGG | + | chr8.4:55007289-55007308 | None:intergenic | 55.0% | |
| ACAGGTGTCTGCACTTGTCC+GGG | - | chr8.4:55007301-55007320 | MS.gene066925:intron | 55.0% | |
| CACAGGTGTCTGCACTTGTC+CGG | - | chr8.4:55007300-55007319 | MS.gene066925:intron | 55.0% | |
| CTCGACCAATCCATCGGTGA+AGG | - | chr8.4:55006338-55006357 | MS.gene066925:CDS | 55.0% | |
| GCGAAAACGGTCGAAGAGGA+CGG | + | chr8.4:55006312-55006331 | None:intergenic | 55.0% | |
| GCTGCGATTATTCGGGCTGA+AGG | - | chr8.4:55007494-55007513 | MS.gene066925:CDS | 55.0% | |
| GGGTTCCTTCACCGATGGAT+TGG | + | chr8.4:55006346-55006365 | None:intergenic | 55.0% | |
| GGTCGAGGATTCCGCGAAAA+CGG | + | chr8.4:55006325-55006344 | None:intergenic | 55.0% | |
| TGGCTCAACAGGAAGCAGAG+AGG | - | chr8.4:55007432-55007451 | MS.gene066925:CDS | 55.0% | |
| TTAGGAAGGAGACTGCGGCT+TGG | + | chr8.4:55006202-55006221 | None:intergenic | 55.0% | |
| TTCCGCGAAAACGGTCGAAG+AGG | + | chr8.4:55006316-55006335 | None:intergenic | 55.0% | |
| ! | AGCGTCGGGCTGCGATTATT+CGG | - | chr8.4:55007486-55007505 | MS.gene066925:CDS | 55.0% |
| ! | GTCCTCTTCGACCGTTTTCG+CGG | - | chr8.4:55006311-55006330 | MS.gene066925:CDS | 55.0% |
| !! | CTTCACCGATGGATTGGTCG+AGG | + | chr8.4:55006340-55006359 | None:intergenic | 55.0% |
| !! | GTAGAGGGAGGTGTTGACAG+CGG | + | chr8.4:55006267-55006286 | None:intergenic | 55.0% |
| !!! | CTACTGCTGCTTTTGGGACG+GGG | - | chr8.4:55007549-55007568 | MS.gene066925:CDS | 55.0% |
| !!! | GCTACTGCTGCTTTTGGGAC+GGG | - | chr8.4:55007548-55007567 | MS.gene066925:CDS | 55.0% |
| ACCTCCCTCTACACCGTCGA+CGG | - | chr8.4:55006275-55006294 | MS.gene066925:CDS | 60.0% | |
| CGGACAAGTGCAGACACCTG+TGG | + | chr8.4:55007302-55007321 | None:intergenic | 60.0% | |
| GCAGAAGCAGGTGGCTCAAC+AGG | - | chr8.4:55007421-55007440 | MS.gene066925:CDS | 60.0% | |
| GCGTCGGGCTGCGATTATTC+GGG | - | chr8.4:55007487-55007506 | MS.gene066925:CDS | 60.0% | |
| TGCTGTGGAGCAGAAGCAGG+TGG | - | chr8.4:55007412-55007431 | MS.gene066925:CDS | 60.0% | |
| ! | ACGGGCGACGTTGGTTAGGA+AGG | + | chr8.4:55006216-55006235 | None:intergenic | 60.0% |
| ! | GAGCCTTGTCCGACGTGCTA+AGG | - | chr8.4:55007325-55007344 | MS.gene066925:CDS | 60.0% |
| ! | GCTCCTTACAGAGCGTCCAC+AGG | - | chr8.4:55007283-55007302 | MS.gene066925:intron | 60.0% |
| ! | TGAAGTCGGAGCAGGAGCGT+CGG | - | chr8.4:55007471-55007490 | MS.gene066925:CDS | 60.0% |
| ACCGTCGACGGTGTAGAGGG+AGG | + | chr8.4:55006279-55006298 | None:intergenic | 65.0% | |
| CACGTCGGACAAGGCTCTCC+CGG | + | chr8.4:55007322-55007341 | None:intergenic | 65.0% | |
| GCCACCGTCGACGGTGTAGA+GGG | + | chr8.4:55006282-55006301 | None:intergenic | 65.0% | |
| GCGTGCTGTGGAGCAGAAGC+AGG | - | chr8.4:55007409-55007428 | MS.gene066925:CDS | 65.0% | |
| TCCCTCTACACCGTCGACGG+TGG | - | chr8.4:55006278-55006297 | MS.gene066925:CDS | 65.0% | |
| !! | AACGTCGCCCGTGCCGCTTT+CGG | - | chr8.4:55006224-55006243 | MS.gene066925:CDS | 65.0% |
| !! | GAAGTCGGAGCAGGAGCGTC+GGG | - | chr8.4:55007472-55007491 | MS.gene066925:CDS | 65.0% |
| GAAAGCGGCACGGGCGACGT+TGG | + | chr8.4:55006225-55006244 | None:intergenic | 70.0% | |
| GGCCACCGTCGACGGTGTAG+AGG | + | chr8.4:55006283-55006302 | None:intergenic | 70.0% | |
| GGTCGAAGAGGACGGCGCGT+TGG | + | chr8.4:55006304-55006323 | None:intergenic | 70.0% | |
| ! | AGCAGCGCCGAGGCCGAAAG+CGG | + | chr8.4:55006240-55006259 | None:intergenic | 70.0% |
| ! | CGGCACGGGCGACGTTGGTT+AGG | + | chr8.4:55006220-55006239 | None:intergenic | 70.0% |
| CAGCGGTTGCAGCAGCGCCG+AGG | + | chr8.4:55006250-55006269 | None:intergenic | 75.0% | |
| CGCCGAGGCCGAAAGCGGCA+CGG | + | chr8.4:55006235-55006254 | None:intergenic | 75.0% | |
| GCCGAGGCCGAAAGCGGCAC+GGG | + | chr8.4:55006234-55006253 | None:intergenic | 75.0% | |
| ! | GGCGCGTTGGCCACCGTCGA+CGG | + | chr8.4:55006291-55006310 | None:intergenic | 75.0% |
| !! | GCCCGTGCCGCTTTCGGCCT+CGG | - | chr8.4:55006230-55006249 | MS.gene066925:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55006188 | 55007700 | 55006188 | ID=MS.gene066925 |
| chr8.4 | mRNA | 55006188 | 55007700 | 55006188 | ID=MS.gene066925.t1;Parent=MS.gene066925 |
| chr8.4 | exon | 55007319 | 55007700 | 55007319 | ID=MS.gene066925.t1.exon1;Parent=MS.gene066925.t1 |
| chr8.4 | CDS | 55007319 | 55007700 | 55007319 | ID=cds.MS.gene066925.t1;Parent=MS.gene066925.t1 |
| chr8.4 | exon | 55006188 | 55006651 | 55006188 | ID=MS.gene066925.t1.exon2;Parent=MS.gene066925.t1 |
| chr8.4 | CDS | 55006188 | 55006651 | 55006188 | ID=cds.MS.gene066925.t1;Parent=MS.gene066925.t1 |
| Gene Sequence |
| Protein sequence |
