Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59883.t1 | XP_003628253.2 | 97.9 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 2.90E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59883.t1 | O04331 | 82.2 | 276 | 49 | 0 | 1 | 276 | 1 | 276 | 1.0e-111 | 404.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59883.t1 | G7L8K5 | 97.9 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 2.1e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043467 | MS.gene59883 | PPI |
| MS.gene59883 | MS.gene063809 | PPI |
| MS.gene058374 | MS.gene59883 | PPI |
| MS.gene016544 | MS.gene59883 | PPI |
| MS.gene68113 | MS.gene59883 | PPI |
| MS.gene59884 | MS.gene59883 | PPI |
| MS.gene063067 | MS.gene59883 | PPI |
| MS.gene92318 | MS.gene59883 | PPI |
| MS.gene59883 | MS.gene066925 | PPI |
| MS.gene78840 | MS.gene59883 | PPI |
| MS.gene09764 | MS.gene59883 | PPI |
| MS.gene59883 | MS.gene56214 | PPI |
| MS.gene000128 | MS.gene59883 | PPI |
| MS.gene067266 | MS.gene59883 | PPI |
| MS.gene99648 | MS.gene59883 | PPI |
| MS.gene59883 | MS.gene024895 | PPI |
| MS.gene59883 | MS.gene015412 | PPI |
| MS.gene59883 | MS.gene067266 | PPI |
| MS.gene59883 | MS.gene028857 | PPI |
| MS.gene59883 | MS.gene91416 | PPI |
| MS.gene88440 | MS.gene59883 | PPI |
| MS.gene59883 | MS.gene80094 | PPI |
| MS.gene014181 | MS.gene59883 | PPI |
| MS.gene59883 | MS.gene016292 | PPI |
| MS.gene055768 | MS.gene59883 | PPI |
| MS.gene009411 | MS.gene59883 | PPI |
| MS.gene61084 | MS.gene59883 | PPI |
| MS.gene68716 | MS.gene59883 | PPI |
| MS.gene31416 | MS.gene59883 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59883.t1 | MTR_8g046300 | 97.865 | 281 | 6 | 0 | 1 | 281 | 1 | 281 | 0.0 | 563 |
| MS.gene59883.t1 | MTR_3g008250 | 89.130 | 276 | 29 | 1 | 1 | 276 | 1 | 275 | 0.0 | 504 |
| MS.gene59883.t1 | MTR_2g090760 | 54.400 | 250 | 111 | 2 | 20 | 269 | 26 | 272 | 5.50e-92 | 274 |
| MS.gene59883.t1 | MTR_4g078200 | 53.279 | 244 | 113 | 1 | 22 | 265 | 31 | 273 | 2.21e-88 | 265 |
| MS.gene59883.t1 | MTR_4g078200 | 53.881 | 219 | 99 | 2 | 57 | 275 | 5 | 221 | 2.07e-78 | 237 |
| MS.gene59883.t1 | MTR_5g093030 | 53.631 | 179 | 82 | 1 | 1 | 179 | 1 | 178 | 4.98e-60 | 189 |
| MS.gene59883.t1 | MTR_5g093040 | 57.627 | 118 | 40 | 1 | 1 | 118 | 1 | 108 | 8.71e-41 | 137 |
| MS.gene59883.t1 | MTR_6g004320 | 55.970 | 134 | 21 | 1 | 92 | 225 | 1 | 96 | 3.29e-39 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59883.t1 | AT5G40770 | 82.609 | 276 | 48 | 0 | 1 | 276 | 1 | 276 | 1.93e-172 | 478 |
| MS.gene59883.t1 | AT3G27280 | 79.348 | 276 | 57 | 0 | 1 | 276 | 1 | 276 | 4.13e-166 | 461 |
| MS.gene59883.t1 | AT3G27280 | 79.348 | 276 | 57 | 0 | 1 | 276 | 1 | 276 | 4.13e-166 | 461 |
| MS.gene59883.t1 | AT5G14300 | 65.079 | 252 | 62 | 1 | 28 | 279 | 20 | 245 | 1.19e-116 | 335 |
| MS.gene59883.t1 | AT4G28510 | 55.128 | 234 | 104 | 1 | 31 | 264 | 35 | 267 | 2.91e-90 | 270 |
| MS.gene59883.t1 | AT1G03860 | 53.909 | 243 | 111 | 1 | 22 | 264 | 26 | 267 | 3.87e-90 | 269 |
| MS.gene59883.t1 | AT1G03860 | 53.909 | 243 | 111 | 1 | 22 | 264 | 26 | 267 | 3.87e-90 | 269 |
| MS.gene59883.t1 | AT5G44140 | 51.793 | 251 | 120 | 1 | 22 | 272 | 26 | 275 | 4.04e-87 | 261 |
| MS.gene59883.t1 | AT2G20530 | 51.852 | 243 | 116 | 1 | 22 | 264 | 24 | 265 | 7.41e-87 | 261 |
| MS.gene59883.t1 | AT2G20530 | 51.852 | 243 | 116 | 1 | 22 | 264 | 24 | 265 | 7.41e-87 | 261 |
| MS.gene59883.t1 | AT1G03860 | 54.187 | 203 | 92 | 1 | 62 | 264 | 1 | 202 | 2.94e-73 | 224 |
Find 81 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATGCTACTGCTGCTTA+TGG | 0.199924 | 8.3:-53358089 | MS.gene59883:CDS |
| GAACCCATGGGATGAGAAAA+TGG | 0.212561 | 8.3:+53359250 | None:intergenic |
| GCCCGTGCCGCTTTCGGCCT+CGG | 0.215116 | 8.3:-53359384 | MS.gene59883:CDS |
| GTTAACCATTTGAAGATCTT+TGG | 0.270736 | 8.3:+53359167 | None:intergenic |
| CCTACTATTGTTCAGAATCT+TGG | 0.298297 | 8.3:-53359102 | MS.gene59883:CDS |
| CCCAATGTTACTTATCTTCC+TGG | 0.308072 | 8.3:-53357999 | MS.gene59883:CDS |
| GCAATCACACATTTGTCTTA+TGG | 0.317155 | 8.3:-53358257 | MS.gene59883:CDS |
| AGCGTCGGGCTGCAATTATT+CGG | 0.319888 | 8.3:-53358145 | MS.gene59883:CDS |
| GTAGGTAAATTCTCAGTATC+AGG | 0.336718 | 8.3:+53359120 | None:intergenic |
| CGCAGGTGTCTGCACTTGTC+CGG | 0.345123 | 8.3:-53358331 | MS.gene59883:CDS |
| GCAGAAGCAGGTGGCTCAAC+AGG | 0.352028 | 8.3:-53358210 | MS.gene59883:CDS |
| AACGTCGCCCGTGCCGCTTT+CGG | 0.381810 | 8.3:-53359390 | MS.gene59883:CDS |
| CACACTTTCTCTTCAATCTC+TGG | 0.385958 | 8.3:-53359192 | MS.gene59883:CDS |
| GAGAAAGAACACGGAGAGTT+AGG | 0.387555 | 8.3:+53359145 | None:intergenic |
| CGGCACGGGCGACGTTGGTT+AGG | 0.388391 | 8.3:+53359397 | None:intergenic |
| CTGATGCTACTGCTGCTTAT+GGG | 0.401554 | 8.3:-53358088 | MS.gene59883:CDS |
| GCCGAGGCCGAAAGCGGCAC+GGG | 0.407599 | 8.3:+53359383 | None:intergenic |
| CGCCGAGGCCGAAAGCGGCA+CGG | 0.426015 | 8.3:+53359382 | None:intergenic |
| GTCGAAATTTGTTGTGATGA+AGG | 0.429268 | 8.3:-53358177 | MS.gene59883:CDS |
| ATTGTAACATTACCGATTGA+AGG | 0.429714 | 8.3:+53359054 | None:intergenic |
| CCAAGATTCTGAACAATAGT+AGG | 0.430812 | 8.3:+53359102 | None:intergenic |
| GCGTCGGGCTGCAATTATTC+GGG | 0.436071 | 8.3:-53358144 | MS.gene59883:CDS |
| GAAGGCGGAGCAGGAGCGTC+GGG | 0.439105 | 8.3:-53358159 | MS.gene59883:CDS |
| GGAGGTGTTGACAGCGGTTG+CGG | 0.439645 | 8.3:+53359356 | None:intergenic |
| GGAAGGGGTTGATTGAACTT+AGG | 0.457512 | 8.3:-53358067 | MS.gene59883:CDS |
| CACGTCGGACAAGGCTCTCC+CGG | 0.471995 | 8.3:+53358312 | None:intergenic |
| TGTTGTGATGAAGGCGGAGC+AGG | 0.472039 | 8.3:-53358168 | MS.gene59883:CDS |
| CTTCACCGATGGATTGGTCG+AGG | 0.478021 | 8.3:+53359277 | None:intergenic |
| GCAGGTGTCTGCACTTGTCC+GGG | 0.483313 | 8.3:-53358330 | MS.gene59883:CDS |
| GGCGCGTTGGCCACCGTCGA+CGG | 0.487014 | 8.3:+53359326 | None:intergenic |
| AACCCATGGGATGAGAAAAT+GGG | 0.496141 | 8.3:+53359251 | None:intergenic |
| GAGCCTTGTCCGACGTGCTA+AGG | 0.504975 | 8.3:-53358306 | MS.gene59883:CDS |
| GCTACTGCTGCTTATGGGAA+GGG | 0.507312 | 8.3:-53358083 | MS.gene59883:CDS |
| ATGTCTCTTAATACTCCAGC+TGG | 0.512855 | 8.3:-53357960 | MS.gene59883:CDS |
| GGGTTCCTTCACCGATGGAT+TGG | 0.513176 | 8.3:+53359271 | None:intergenic |
| GCGTGCTGTGGAGCAGAAGC+AGG | 0.514540 | 8.3:-53358222 | MS.gene59883:CDS |
| CCAGGAAGATAAGTAACATT+GGG | 0.515186 | 8.3:+53357999 | None:intergenic |
| GGCCACCGTCGACGGTGTAG+AGG | 0.515496 | 8.3:+53359334 | None:intergenic |
| AACAACAATCAACGACCAGC+TGG | 0.515801 | 8.3:+53357945 | None:intergenic |
| GGTCGAGGATTCCGCGGAAA+CGG | 0.515882 | 8.3:+53359292 | None:intergenic |
| CTACTGCTGCTTATGGGAAG+GGG | 0.527322 | 8.3:-53358082 | MS.gene59883:CDS |
| AAGCTGCTAGAGAAATTGTC+AGG | 0.529093 | 8.3:-53358037 | MS.gene59883:CDS |
| TGGTACCAAAGATCTTCAAA+TGG | 0.533778 | 8.3:-53359172 | MS.gene59883:CDS |
| CAGCGGTTGCGGCAGCGCCG+AGG | 0.542108 | 8.3:+53359367 | None:intergenic |
| GGCAGCGCCGAGGCCGAAAG+CGG | 0.542818 | 8.3:+53359377 | None:intergenic |
| TGCTACTGCTGCTTATGGGA+AGG | 0.544364 | 8.3:-53358084 | MS.gene59883:CDS |
| CTCGACCAATCCATCGGTGA+AGG | 0.554173 | 8.3:-53359276 | MS.gene59883:CDS |
| GGTCGAAGAGGACGGCGCGT+TGG | 0.554524 | 8.3:+53359313 | None:intergenic |
| ACCAGGAAGATAAGTAACAT+TGG | 0.557792 | 8.3:+53357998 | None:intergenic |
| ACGGGCGACGTTGGTTAGGA+AGG | 0.561469 | 8.3:+53359401 | None:intergenic |
| AATCCTTAGCACGTCGGACA+AGG | 0.567094 | 8.3:+53358303 | None:intergenic |
| TGAAGGCGGAGCAGGAGCGT+CGG | 0.572437 | 8.3:-53358160 | MS.gene59883:CDS |
| AAAATGGGTTCCTTCACCGA+TGG | 0.573182 | 8.3:+53359266 | None:intergenic |
| GCTTCTTACAGAGCGTCCGC+AGG | 0.575412 | 8.3:-53358348 | MS.gene59883:CDS |
| CAGAGATTGAAGAGAAAGTG+TGG | 0.578351 | 8.3:+53359193 | None:intergenic |
| GTCCTCTTCGACCGTTTCCG+CGG | 0.583762 | 8.3:-53359303 | MS.gene59883:CDS |
| GCTGCAATTATTCGGGCTGA+AGG | 0.586953 | 8.3:-53358137 | MS.gene59883:CDS |
| TGCTGTGGAGCAGAAGCAGG+TGG | 0.588155 | 8.3:-53358219 | MS.gene59883:CDS |
| AGAGATTGAAGAGAAAGTGT+GGG | 0.588555 | 8.3:+53359194 | None:intergenic |
| GCGGAAACGGTCGAAGAGGA+CGG | 0.591383 | 8.3:+53359305 | None:intergenic |
| TTAGGAAGGAGACTGCGGCT+TGG | 0.596955 | 8.3:+53359415 | None:intergenic |
| GAAAGCGGCACGGGCGACGT+TGG | 0.597200 | 8.3:+53359392 | None:intergenic |
| GCCACCGTCGACGGTGTAGA+GGG | 0.600376 | 8.3:+53359335 | None:intergenic |
| ATGATCATGTTATTTCCACC+AGG | 0.609015 | 8.3:+53357981 | None:intergenic |
| ACCTCCCTCTACACCGTCGA+CGG | 0.610203 | 8.3:-53359339 | MS.gene59883:CDS |
| TCCCTCTACACCGTCGACGG+TGG | 0.623772 | 8.3:-53359336 | MS.gene59883:CDS |
| GGAATCCTCGACCAATCCAT+CGG | 0.624287 | 8.3:-53359282 | MS.gene59883:CDS |
| AATGTTACTTATCTTCCTGG+TGG | 0.628220 | 8.3:-53357996 | MS.gene59883:CDS |
| TTCCGCGGAAACGGTCGAAG+AGG | 0.635954 | 8.3:+53359301 | None:intergenic |
| TATCAGGACGAGAAAGAACA+CGG | 0.653503 | 8.3:+53359136 | None:intergenic |
| ACCGTCGACGGTGTAGAGGG+AGG | 0.656882 | 8.3:+53359338 | None:intergenic |
| TCGGGCTGAAGGTGAGAGTG+AGG | 0.657058 | 8.3:-53358126 | MS.gene59883:CDS |
| TGGATTGGTCGAGGATTCCG+CGG | 0.667712 | 8.3:+53359286 | None:intergenic |
| GAAATTTGTTGTGATGAAGG+CGG | 0.669031 | 8.3:-53358174 | MS.gene59883:CDS |
| GTTGGTTAGGAAGGAGACTG+CGG | 0.671219 | 8.3:+53359410 | None:intergenic |
| GAGATTGAAGAGAAAGTGTG+GGG | 0.685729 | 8.3:+53359195 | None:intergenic |
| CGGACAAGTGCAGACACCTG+CGG | 0.688366 | 8.3:+53358332 | None:intergenic |
| GTAGAGGGAGGTGTTGACAG+CGG | 0.702700 | 8.3:+53359350 | None:intergenic |
| TGGCTCAACAGGAAGCAGAG+AGG | 0.714990 | 8.3:-53358199 | MS.gene59883:CDS |
| TGTTAAAATCCTTAGCACGT+CGG | 0.733880 | 8.3:+53358297 | None:intergenic |
| TGTTGTGGCGCAATTCAATG+CGG | 0.748294 | 8.3:-53358375 | MS.gene59883:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCATGAAAATTAATTTATT+TGG | - | chr8.3:53358628-53358647 | MS.gene59883:intron | 15.0% |
| !!! | TCTGTTTTTATAAACTATAT+TGG | - | chr8.3:53358508-53358527 | MS.gene59883:intron | 15.0% |
| !! | TGCATGAAAATTAATCTATT+TGG | - | chr8.3:53358755-53358774 | MS.gene59883:intron | 20.0% |
| !!! | GAAAATTAATTTATTTGGTG+TGG | - | chr8.3:53358633-53358652 | MS.gene59883:intron | 20.0% |
| !!! | GGAGTTAGTTTTTTTTAAAT+TGG | + | chr8.3:53358920-53358939 | None:intergenic | 20.0% |
| ! | AATAAGTAGTTTATCCAAAC+AGG | + | chr8.3:53358405-53358424 | None:intergenic | 25.0% |
| ! | CACCAACAAAATATATAGAT+TGG | + | chr8.3:53358562-53358581 | None:intergenic | 25.0% |
| !! | AGCCAATCTATATATTTTGT+TGG | - | chr8.3:53358557-53358576 | MS.gene59883:intron | 25.0% |
| !! | ATAGATTAATTTTCATGCAG+CGG | + | chr8.3:53358754-53358773 | None:intergenic | 25.0% |
| !! | CGTATTGATAGATTTATCTA+GGG | - | chr8.3:53358379-53358398 | MS.gene59883:CDS | 25.0% |
| !!! | TCTATTTGTTGTGTTTTGAT+TGG | - | chr8.3:53358826-53358845 | MS.gene59883:intron | 25.0% |
| !!! | TTAATTTATTTGGTGTGGTT+AGG | - | chr8.3:53358638-53358657 | MS.gene59883:intron | 25.0% |
| ACATATCCGTTACATTATCA+AGG | + | chr8.3:53358941-53358960 | None:intergenic | 30.0% | |
| CAAAAATAGGTTTACACTGT+CGG | - | chr8.3:53358675-53358694 | MS.gene59883:intron | 30.0% | |
| CTAACTTTGACATCTTTGAT+AGG | - | chr8.3:53358963-53358982 | MS.gene59883:intron | 30.0% | |
| GAAAAAGTTCTTCCTTCAAT+CGG | - | chr8.3:53358313-53358332 | MS.gene59883:CDS | 30.0% | |
| GTTAACCATTTGAAGATCTT+TGG | + | chr8.3:53358215-53358234 | None:intergenic | 30.0% | |
| TGGTAAAGATTGGCAAAAAT+AGG | - | chr8.3:53358662-53358681 | MS.gene59883:intron | 30.0% | |
| TTGATAGAATGAGTACATTG+AGG | - | chr8.3:53358885-53358904 | MS.gene59883:intron | 30.0% | |
| ! | ATTGTAACATTACCGATTGA+AGG | + | chr8.3:53358328-53358347 | None:intergenic | 30.0% |
| ! | GCGTATTGATAGATTTATCT+AGG | - | chr8.3:53358378-53358397 | MS.gene59883:CDS | 30.0% |
| ! | TGCATGAGAATTAGTCTATT+TGG | - | chr8.3:53358698-53358717 | MS.gene59883:intron | 30.0% |
| ! | TGGAAAAAGTTTTACACTGT+CGG | - | chr8.3:53358789-53358808 | MS.gene59883:intron | 30.0% |
| !! | CTAACTCCTTGATAATGTAA+CGG | - | chr8.3:53358932-53358951 | MS.gene59883:intron | 30.0% |
| !! | GTTTTGATATCGAAGATGTA+AGG | + | chr8.3:53358160-53358179 | None:intergenic | 30.0% |
| !! | TCTATTTGGTGTGATTTGAT+TGG | - | chr8.3:53358712-53358731 | MS.gene59883:intron | 30.0% |
| ACCAGGAAGATAAGTAACAT+TGG | + | chr8.3:53359384-53359403 | None:intergenic | 35.0% | |
| CCAAGATTCTGAACAATAGT+AGG | + | chr8.3:53358280-53358299 | None:intergenic | 35.0% | |
| CCAGGAAGATAAGTAACATT+GGG | + | chr8.3:53359383-53359402 | None:intergenic | 35.0% | |
| CCTACTATTGTTCAGAATCT+TGG | - | chr8.3:53358277-53358296 | MS.gene59883:CDS | 35.0% | |
| GCAATCACACATTTGTCTTA+TGG | - | chr8.3:53359122-53359141 | MS.gene59883:CDS | 35.0% | |
| GTAGGTAAATTCTCAGTATC+AGG | + | chr8.3:53358262-53358281 | None:intergenic | 35.0% | |
| TGGTACCAAAGATCTTCAAA+TGG | - | chr8.3:53358207-53358226 | MS.gene59883:CDS | 35.0% | |
| TGTTAAAATCCTTAGCACGT+CGG | + | chr8.3:53359085-53359104 | None:intergenic | 35.0% | |
| TTAATCTATTTGGCGTGACT+TGG | - | chr8.3:53358765-53358784 | MS.gene59883:intron | 35.0% | |
| ! | AATGTTACTTATCTTCCTGG+TGG | - | chr8.3:53359383-53359402 | MS.gene59883:CDS | 35.0% |
| ! | AGAGATTGAAGAGAAAGTGT+GGG | + | chr8.3:53358188-53358207 | None:intergenic | 35.0% |
| !! | ATGATCATGTTATTTCCACC+AGG | + | chr8.3:53359401-53359420 | None:intergenic | 35.0% |
| !! | GAAATTTGTTGTGATGAAGG+CGG | - | chr8.3:53359205-53359224 | MS.gene59883:CDS | 35.0% |
| !! | GTCGAAATTTGTTGTGATGA+AGG | - | chr8.3:53359202-53359221 | MS.gene59883:CDS | 35.0% |
| !! | TTTATTTGGTGTGGTTAGGT+TGG | - | chr8.3:53358642-53358661 | MS.gene59883:intron | 35.0% |
| !!! | TGAAGTTTTGAAAGCTGTTG+TGG | - | chr8.3:53358989-53359008 | MS.gene59883:intron | 35.0% |
| AACCCATGGGATGAGAAAAT+GGG | + | chr8.3:53358131-53358150 | None:intergenic | 40.0% | |
| AAGCTGCTAGAGAAATTGTC+AGG | - | chr8.3:53359342-53359361 | MS.gene59883:CDS | 40.0% | |
| ATGTCTCTTAATACTCCAGC+TGG | - | chr8.3:53359419-53359438 | MS.gene59883:CDS | 40.0% | |
| CACACTTTCTCTTCAATCTC+TGG | - | chr8.3:53358187-53358206 | MS.gene59883:CDS | 40.0% | |
| CAGAGATTGAAGAGAAAGTG+TGG | + | chr8.3:53358189-53358208 | None:intergenic | 40.0% | |
| TATCAGGACGAGAAAGAACA+CGG | + | chr8.3:53358246-53358265 | None:intergenic | 40.0% | |
| ! | AACCCATTTTCTCATCCCAT+GGG | - | chr8.3:53358126-53358145 | MS.gene59883:CDS | 40.0% |
| ! | AGATTTATCTAGGGCCTGTT+TGG | - | chr8.3:53358388-53358407 | MS.gene59883:CDS | 40.0% |
| ! | ATGTAAGGCTTTTGAACCCA+TGG | + | chr8.3:53358145-53358164 | None:intergenic | 40.0% |
| ! | CCCAATGTTACTTATCTTCC+TGG | - | chr8.3:53359380-53359399 | MS.gene59883:CDS | 40.0% |
| ! | GAGATTGAAGAGAAAGTGTG+GGG | + | chr8.3:53358187-53358206 | None:intergenic | 40.0% |
| ! | TGTAAGGCTTTTGAACCCAT+GGG | + | chr8.3:53358144-53358163 | None:intergenic | 40.0% |
| !! | GTGGTTAGGTTGGTAAAGAT+TGG | - | chr8.3:53358652-53358671 | MS.gene59883:intron | 40.0% |
| GAACCCATGGGATGAGAAAA+TGG | + | chr8.3:53358132-53358151 | None:intergenic | 45.0% | |
| GAGAAAGAACACGGAGAGTT+AGG | + | chr8.3:53358237-53358256 | None:intergenic | 45.0% | |
| TGTTGTGGCGCAATTCAATG+CGG | - | chr8.3:53359004-53359023 | MS.gene59883:intron | 45.0% | |
| ! | AAAATGGGTTCCTTCACCGA+TGG | + | chr8.3:53358116-53358135 | None:intergenic | 45.0% |
| ! | CTGATGCTACTGCTGCTTAT+GGG | - | chr8.3:53359291-53359310 | MS.gene59883:CDS | 45.0% |
| ! | GAACCCATTTTCTCATCCCA+TGG | - | chr8.3:53358125-53358144 | MS.gene59883:CDS | 45.0% |
| ! | GGAAGGGGTTGATTGAACTT+AGG | - | chr8.3:53359312-53359331 | MS.gene59883:CDS | 45.0% |
| ! | TACTGAATTTTCGCGTGCTG+TGG | - | chr8.3:53359145-53359164 | MS.gene59883:CDS | 45.0% |
| ! | TCTGATGCTACTGCTGCTTA+TGG | - | chr8.3:53359290-53359309 | MS.gene59883:CDS | 45.0% |
| !! | TCTATTTGGCGTGACTTGGT+TGG | - | chr8.3:53358769-53358788 | MS.gene59883:intron | 45.0% |
| AATCCTTAGCACGTCGGACA+AGG | + | chr8.3:53359079-53359098 | None:intergenic | 50.0% | |
| GCTGCAATTATTCGGGCTGA+AGG | - | chr8.3:53359242-53359261 | MS.gene59883:CDS | 50.0% | |
| GGAATCCTCGACCAATCCAT+CGG | - | chr8.3:53358097-53358116 | MS.gene59883:CDS | 50.0% | |
| GTTGGTTAGGAAGGAGACTG+CGG | + | chr8.3:53357972-53357991 | None:intergenic | 50.0% | |
| ! | AGCGTCGGGCTGCAATTATT+CGG | - | chr8.3:53359234-53359253 | MS.gene59883:CDS | 50.0% |
| ! | CTACTGCTGCTTATGGGAAG+GGG | - | chr8.3:53359297-53359316 | MS.gene59883:CDS | 50.0% |
| ! | GCTACTGCTGCTTATGGGAA+GGG | - | chr8.3:53359296-53359315 | MS.gene59883:CDS | 50.0% |
| ! | TGCTACTGCTGCTTATGGGA+AGG | - | chr8.3:53359295-53359314 | MS.gene59883:CDS | 50.0% |
| CTCGACCAATCCATCGGTGA+AGG | - | chr8.3:53358103-53358122 | MS.gene59883:CDS | 55.0% | |
| GCGTCGGGCTGCAATTATTC+GGG | - | chr8.3:53359235-53359254 | MS.gene59883:CDS | 55.0% | |
| GGGTTCCTTCACCGATGGAT+TGG | + | chr8.3:53358111-53358130 | None:intergenic | 55.0% | |
| TGGCTCAACAGGAAGCAGAG+AGG | - | chr8.3:53359180-53359199 | MS.gene59883:CDS | 55.0% | |
| TGTTGTGATGAAGGCGGAGC+AGG | - | chr8.3:53359211-53359230 | MS.gene59883:CDS | 55.0% | |
| TTAGGAAGGAGACTGCGGCT+TGG | + | chr8.3:53357967-53357986 | None:intergenic | 55.0% | |
| !! | CTTCACCGATGGATTGGTCG+AGG | + | chr8.3:53358105-53358124 | None:intergenic | 55.0% |
| !! | GTAGAGGGAGGTGTTGACAG+CGG | + | chr8.3:53358032-53358051 | None:intergenic | 55.0% |
| !! | TGGATTGGTCGAGGATTCCG+CGG | + | chr8.3:53358096-53358115 | None:intergenic | 55.0% |
| ACCTCCCTCTACACCGTCGA+CGG | - | chr8.3:53358040-53358059 | MS.gene59883:CDS | 60.0% | |
| CGCAGGTGTCTGCACTTGTC+CGG | - | chr8.3:53359048-53359067 | MS.gene59883:intron | 60.0% | |
| CGGACAAGTGCAGACACCTG+CGG | + | chr8.3:53359050-53359069 | None:intergenic | 60.0% | |
| GCAGAAGCAGGTGGCTCAAC+AGG | - | chr8.3:53359169-53359188 | MS.gene59883:CDS | 60.0% | |
| GCAGGTGTCTGCACTTGTCC+GGG | - | chr8.3:53359049-53359068 | MS.gene59883:intron | 60.0% | |
| GCGGAAACGGTCGAAGAGGA+CGG | + | chr8.3:53358077-53358096 | None:intergenic | 60.0% | |
| GGTCGAGGATTCCGCGGAAA+CGG | + | chr8.3:53358090-53358109 | None:intergenic | 60.0% | |
| GTCCTCTTCGACCGTTTCCG+CGG | - | chr8.3:53358076-53358095 | MS.gene59883:CDS | 60.0% | |
| TCGGGCTGAAGGTGAGAGTG+AGG | - | chr8.3:53359253-53359272 | MS.gene59883:CDS | 60.0% | |
| TGCTGTGGAGCAGAAGCAGG+TGG | - | chr8.3:53359160-53359179 | MS.gene59883:CDS | 60.0% | |
| TTCCGCGGAAACGGTCGAAG+AGG | + | chr8.3:53358081-53358100 | None:intergenic | 60.0% | |
| ! | ACGGGCGACGTTGGTTAGGA+AGG | + | chr8.3:53357981-53358000 | None:intergenic | 60.0% |
| ! | GAGCCTTGTCCGACGTGCTA+AGG | - | chr8.3:53359073-53359092 | MS.gene59883:CDS | 60.0% |
| ! | GCTTCTTACAGAGCGTCCGC+AGG | - | chr8.3:53359031-53359050 | MS.gene59883:intron | 60.0% |
| !! | GGAGGTGTTGACAGCGGTTG+CGG | + | chr8.3:53358026-53358045 | None:intergenic | 60.0% |
| ACCGTCGACGGTGTAGAGGG+AGG | + | chr8.3:53358044-53358063 | None:intergenic | 65.0% | |
| CACGTCGGACAAGGCTCTCC+CGG | + | chr8.3:53359070-53359089 | None:intergenic | 65.0% | |
| GCCACCGTCGACGGTGTAGA+GGG | + | chr8.3:53358047-53358066 | None:intergenic | 65.0% | |
| GCGTGCTGTGGAGCAGAAGC+AGG | - | chr8.3:53359157-53359176 | MS.gene59883:CDS | 65.0% | |
| TCCCTCTACACCGTCGACGG+TGG | - | chr8.3:53358043-53358062 | MS.gene59883:CDS | 65.0% | |
| ! | TGAAGGCGGAGCAGGAGCGT+CGG | - | chr8.3:53359219-53359238 | MS.gene59883:CDS | 65.0% |
| !! | AACGTCGCCCGTGCCGCTTT+CGG | - | chr8.3:53357989-53358008 | MS.gene59883:CDS | 65.0% |
| GAAAGCGGCACGGGCGACGT+TGG | + | chr8.3:53357990-53358009 | None:intergenic | 70.0% | |
| GGCCACCGTCGACGGTGTAG+AGG | + | chr8.3:53358048-53358067 | None:intergenic | 70.0% | |
| GGTCGAAGAGGACGGCGCGT+TGG | + | chr8.3:53358069-53358088 | None:intergenic | 70.0% | |
| ! | CGGCACGGGCGACGTTGGTT+AGG | + | chr8.3:53357985-53358004 | None:intergenic | 70.0% |
| !! | GAAGGCGGAGCAGGAGCGTC+GGG | - | chr8.3:53359220-53359239 | MS.gene59883:CDS | 70.0% |
| CGCCGAGGCCGAAAGCGGCA+CGG | + | chr8.3:53358000-53358019 | None:intergenic | 75.0% | |
| GCCGAGGCCGAAAGCGGCAC+GGG | + | chr8.3:53357999-53358018 | None:intergenic | 75.0% | |
| ! | GGCAGCGCCGAGGCCGAAAG+CGG | + | chr8.3:53358005-53358024 | None:intergenic | 75.0% |
| ! | GGCGCGTTGGCCACCGTCGA+CGG | + | chr8.3:53358056-53358075 | None:intergenic | 75.0% |
| !! | GCCCGTGCCGCTTTCGGCCT+CGG | - | chr8.3:53357995-53358014 | MS.gene59883:CDS | 75.0% |
| ! | CAGCGGTTGCGGCAGCGCCG+AGG | + | chr8.3:53358015-53358034 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53357953 | 53359448 | 53357953 | ID=MS.gene59883 |
| chr8.3 | mRNA | 53357953 | 53359448 | 53357953 | ID=MS.gene59883.t1;Parent=MS.gene59883 |
| chr8.3 | exon | 53359067 | 53359448 | 53359067 | ID=MS.gene59883.t1.exon1;Parent=MS.gene59883.t1 |
| chr8.3 | CDS | 53359067 | 53359448 | 53359067 | ID=cds.MS.gene59883.t1;Parent=MS.gene59883.t1 |
| chr8.3 | exon | 53357953 | 53358416 | 53357953 | ID=MS.gene59883.t1.exon2;Parent=MS.gene59883.t1 |
| chr8.3 | CDS | 53357953 | 53358416 | 53357953 | ID=cds.MS.gene59883.t1;Parent=MS.gene59883.t1 |
| Gene Sequence |
| Protein sequence |
